Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm GCLM 2730 hgsc.bcm.edu hg19 1 94362176 94362176 + Missense_Mutation SNP G G C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . GCLM NM_002061 exon5 c.C538G p.Q180E TCACCTGTGCCCA . 162.0 76.0 114.0 0.0 . 20 . . Atlas-SNP CGN 57530 hgsc.bcm.edu hg19 1 151506476 151506476 + Missense_Mutation SNP A A G novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . CGN NM_020770 exon15 c.A2768G p.Q923R CCCTGCAGGCATC . 563.0 70.0 391.0 0.0 . 106 . . Atlas-SNP CELF3 11189 hgsc.bcm.edu hg19 1 151678725 151678725 + Silent SNP C C T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 CELF3,caecum,carcinoma,0,1 CELF3 NM_007185 exon10 c.G1101A p.Q367Q CTGTTGCTGCTGC . 85.0 4.0 39.0 0.0 . 49 . . Atlas-SNP OR10J1 26476 hgsc.bcm.edu hg19 1 159409832 159409832 + Missense_Mutation SNP G G T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . OR10J1 NM_012351 exon1 c.G284T p.S95I TCTCCAGCCTCGT . 166.0 7.0 101.0 0.0 . 118 . . Atlas-SNP PTPRC 5788 hgsc.bcm.edu hg19 1 198698298 198698298 + Missense_Mutation SNP G G A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . PTPRC NM_002838 exon17 c.G1862A p.R621K TTGAAAGGGGTAA . 431.0 247.0 312.0 0.0 . 229 . . Atlas-SNP KIF26B 55083 hgsc.bcm.edu hg19 1 245771032 245771032 + Missense_Mutation SNP G G A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . KIF26B NM_018012 exon7 c.G1637A p.G546D GTTTCGGCCACGC . 99.0 59.0 79.0 0.0 . 343 . . Atlas-SNP OR6F1 343169 hgsc.bcm.edu hg19 1 247875822 247875822 + Missense_Mutation SNP G G A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . OR6F1 NM_001005286 exon1 c.C236T p.P79L GCTTTGGGCACTG . 87.0 22.0 70.0 0.0 . 88 . . Atlas-SNP OR2T4 127074 hgsc.bcm.edu hg19 1 248525807 248525807 + Missense_Mutation SNP T T C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . OR2T4 NM_001004696 exon1 c.T925C p.F309L TCTGTCTTCTATA . 792.0 234.0 716.0 0.0 . 126 . . Atlas-SNP NRXN1 9378 hgsc.bcm.edu hg19 2 50280467 50280467 + Missense_Mutation SNP G G C rs200974417 alternate_allele TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . NRXN1 NM_001135659 exon22 c.C4190G p.T1397S GCCAGGGTCGTGG . 77.0 30.0 84.0 0.0 . 1118 . . Atlas-SNP AAK1 22848 hgsc.bcm.edu hg19 2 69784077 69784077 + Missense_Mutation SNP C C T rs371902412 TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . AAK1 NM_014911 exon3 c.G197A p.S66N CCATTGCTTGTCC . 84.0 33.0 75.0 0.0 . 121 . . Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220352988 220352988 + Missense_Mutation SNP G G A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . SPEG NM_005876 exon32 c.G7814A p.C2605Y TGCTCTGCCTGCC . 67.0 32.0 55.0 0.0 . 272 . . Atlas-SNP C2orf57 165100 hgsc.bcm.edu hg19 2 232458829 232458829 + Silent SNP G G A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . C2orf57 NM_152614 exon1 c.G1167A p.Q389Q GGCCCAGGCTGAC . 74.0 35.0 107.0 0.0 . 35 . . Atlas-SNP SUSD5 26032 hgsc.bcm.edu hg19 3 33194727 33194727 + Missense_Mutation SNP G G A rs377664152 TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . SUSD5 NM_015551 exon5 c.C1397T p.T466M TACTTCGTCAAGT . 48.0 12.0 67.0 0.0 . 53 . . Atlas-SNP HTR1F 3355 hgsc.bcm.edu hg19 3 88040772 88040772 + Silent SNP A A G novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . HTR1F NM_000866 exon2 c.A873G p.A291A GAAAGCAGCCACT . 87.0 29.0 91.0 0.0 . 66 . . Atlas-SNP BOC 91653 hgsc.bcm.edu hg19 3 112991482 112991482 + Missense_Mutation SNP G G A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . BOC NM_033254 exon7 c.G893A p.R298H CCTACCGCTGCAT . 95.0 22.0 120.0 0.0 . 139 . . Atlas-SNP GPR149 344758 hgsc.bcm.edu hg19 3 154146570 154146570 + Missense_Mutation SNP C C G novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . GPR149 NM_001038705 exon1 c.G835C p.A279P CGGGCGCACCCGG . 177.0 95.0 181.0 0.0 . 134 . . Atlas-SNP TMA16 55319 hgsc.bcm.edu hg19 4 164436503 164436503 + Missense_Mutation SNP A A G novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . . NM_018352 exon5 c.A278G p.E93G AGATTGAGTTACA . 230.0 90.0 378.0 0.0 . . . . Atlas-SNP MYO10 4651 hgsc.bcm.edu hg19 5 16689975 16689975 + Missense_Mutation SNP T T A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . MYO10 NM_012334 exon28 c.A3854T p.D1285V GTCCTATCGGCCA . 105.0 33.0 77.0 0.0 . 198 . . Atlas-SNP TENM2 57451 hgsc.bcm.edu hg19 5 167654929 167654929 + Missense_Mutation SNP A A T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . . NM_001122679 exon25 c.A5287T p.N1763Y CTCTGTAATAATG . 95.0 32.0 169.0 0.0 . . . . Atlas-SNP DPCR1 135656 hgsc.bcm.edu hg19 6 30919613 30919613 + Missense_Mutation SNP G G C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . DPCR1 NM_080870 exon2 c.G3372C p.E1124D AGCAGAGTCTACA . 69.0 33.0 69.0 0.0 . 99 . . Atlas-SNP KLHDC3 116138 hgsc.bcm.edu hg19 6 42986657 42986657 + Missense_Mutation SNP C C T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . KLHDC3 NM_057161 exon8 c.C877T p.R293C CGCCGGCGCCAGT . 106.0 20.0 121.0 0.0 . 23 . . Atlas-SNP ROS1 6098 hgsc.bcm.edu hg19 6 117746713 117746713 + Nonsense_Mutation SNP G G T rs371523377 alternate_allele TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . ROS1 NM_002944 exon1 c.C107A p.S36X ACACACGACTTTA . 103.0 53.0 120.0 0.0 . 728 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48443322 48443322 + Missense_Mutation SNP G G C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . ABCA13 NM_152701 exon39 c.G11916C p.Q3972H CAAACAGACCCGA . 63.0 26.0 90.0 0.0 . 1192 . . Atlas-SNP GNAQ 2776 hgsc.bcm.edu hg19 9 80537112 80537112 + Missense_Mutation SNP T T A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 GNAQ,NS,carcinoma,0,2 GNAQ NM_002072 exon2 c.A286T p.T96S TGAGTGTGTCCAT . 44.0 3.0 45.0 0.0 . 384 . . Atlas-SNP RPL7A 6130 hgsc.bcm.edu hg19 9 136216547 136216547 + Missense_Mutation SNP G G T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . RPL7A NM_000972 exon3 c.G266T p.R89L TGGACCGCCAAAC . 115.0 5.0 131.0 0.0 . 9 . . Atlas-SNP RNF208 727800 hgsc.bcm.edu hg19 9 140115059 140115059 + Silent SNP G G A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . RNF208 NM_031297 exon1 c.C606T p.A202A CAGCGCGGCCAGG . 356.0 18.0 247.0 0.0 . 11 . . Atlas-SNP NLRP10 338322 hgsc.bcm.edu hg19 11 7981277 7981277 + Missense_Mutation SNP T T C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . NLRP10 NM_176821 exon2 c.A1882G p.K628E TATCTTTGCCCTC . 96.0 5.0 103.0 0.0 . 146 . . Atlas-SNP GALNT18 374378 hgsc.bcm.edu hg19 11 11643115 11643115 + Missense_Mutation SNP G G A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . . NM_198516 exon1 c.C26T p.T9I ACCAAAGTTTTGG . 106.0 40.0 76.0 0.0 . . . . Atlas-SNP WDR74 54663 hgsc.bcm.edu hg19 11 62607038 62607038 + Missense_Mutation SNP G G A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . WDR74 NM_018093 exon2 c.C5T p.A2V GCAGCCGCCATGA . 80.0 33.0 69.0 0.0 . 36 . . Atlas-SNP SUV420H1 51111 hgsc.bcm.edu hg19 11 67957487 67957487 + Silent SNP G G T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . SUV420H1 NM_017635 exon2 c.C57A p.G19G CAACTTGCCTCCA . 66.0 4.0 76.0 0.0 . 125 . . Atlas-SNP PDE3A 5139 hgsc.bcm.edu hg19 12 20782946 20782946 + Missense_Mutation SNP G G C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . PDE3A NM_000921 exon6 c.G1645C p.E549Q TTTCCAGAATCTG . 54.0 20.0 87.0 0.0 . 184 . . Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112685925 112685925 + Missense_Mutation SNP C C G novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . . NM_001109662 exon27 c.G3792C p.M1264I CCCCTGCATGGCA . 151.0 7.0 135.0 0.0 . . . . Atlas-SNP STOML3 161003 hgsc.bcm.edu hg19 13 39564842 39564842 + Missense_Mutation SNP G G A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . STOML3 NM_145286 exon1 c.C17T p.S6F GGTGAAGACACCC . 56.0 37.0 87.0 0.0 . 47 . . Atlas-SNP DZIP1 22873 hgsc.bcm.edu hg19 13 96239841 96239841 + Missense_Mutation SNP T T C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . DZIP1 NM_198968 exon20 c.A2170G p.T724A CCTCGGTCCCGTC . 142.0 69.0 90.0 0.0 . 195 . . Atlas-SNP ZIC2 7546 hgsc.bcm.edu hg19 13 100637726 100637726 + Silent SNP G G T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . ZIC2 NM_007129 exon3 c.G1389T p.A463A GGCGGCGGCTGCG . 113.0 5.0 92.0 0.0 . 25 . . Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20850191 20850191 + Silent SNP C C T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . TEP1 NM_007110 exon30 c.G4305A p.L1435L CACACTCAGCACT . 112.0 60.0 67.0 0.0 . 224 . . Atlas-SNP PTPN21 11099 hgsc.bcm.edu hg19 14 88970830 88970830 + Missense_Mutation SNP G G C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . PTPN21 NM_007039 exon6 c.C526G p.Q176E CATCTTGTAACCA . 76.0 59.0 113.0 0.0 . 113 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105408769 105408769 + Missense_Mutation SNP T T C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . AHNAK2 NM_138420 exon7 c.A13019G p.D4340G TTCAGGTCCCCCT . 93.0 4.0 110.0 0.0 . 719 . . Atlas-SNP RPL4 6124 hgsc.bcm.edu hg19 15 66795056 66795056 + Silent SNP G G C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . RPL4 NM_000968 exon4 c.C315G p.T105T GGTTTTGGTTGGT . 123.0 49.0 189.0 0.0 . 29 . . Atlas-SNP SCNN1B 6338 hgsc.bcm.edu hg19 16 23364163 23364163 + Missense_Mutation SNP T T A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . SCNN1B NM_000336 exon3 c.T353A p.L118Q ATGAGCTGATGGA . 57.0 23.0 95.0 0.0 . 81 . . Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74640738 74640738 + Silent SNP A A C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . GLG1 NM_001145667 exon1 c.T255G p.P85P CGGCTGAGGCTGC . 52.0 15.0 77.0 0.0 . 106 . . Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74640739 74640739 + Missense_Mutation SNP G G T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . GLG1 NM_001145667 exon1 c.C254A p.P85H GGCTGAGGCTGCT . 53.0 16.0 77.0 0.0 . 106 . . Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74640753 74640753 + Silent SNP T T C rs374123768 alternate_allele TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . GLG1 NM_001145667 exon1 c.A240G p.Q80Q TTGCTGTTGCTGC . 53.0 22.0 72.0 0.0 . 106 . . Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74640777 74640777 + Silent SNP A A C novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . GLG1 NM_001145667 exon1 c.T216G p.L72L CTGCTGAAGCTGC . 53.0 14.0 75.0 0.0 . 106 . . Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74640778 74640778 + Missense_Mutation SNP A A T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . GLG1 NM_001145667 exon1 c.T215A p.L72H TGCTGAAGCTGCG . 54.0 14.0 75.0 0.0 . 106 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9074011 9074011 + Missense_Mutation SNP G G T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . MUC16 NM_024690 exon3 c.C13435A p.P4479T AAACAGGAGAGGA . 121.0 63.0 129.0 0.0 . 4315 . . Atlas-SNP ZNF676 163223 hgsc.bcm.edu hg19 19 22363152 22363152 + Missense_Mutation SNP T T G novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . ZNF676 NM_001001411 exon3 c.A1367C p.K456T AAGGCTTTGCCAC . 63.0 19.0 52.0 0.0 . 146 . . Atlas-SNP C19orf33 64073 hgsc.bcm.edu hg19 19 38795301 38795301 + Missense_Mutation SNP C C A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . C19orf33 NM_033520 exon3 c.C176A p.S59Y GCAGCTCCAGCGA . 231.0 165.0 150.0 0.0 . 9 . . Atlas-SNP SSC5D 284297 hgsc.bcm.edu hg19 19 56029616 56029616 + Missense_Mutation SNP C C A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . SSC5D NM_001144950 exon14 c.C3973A p.P1325T CCTCACCCCACAA . 114.0 6.0 70.0 0.0 . 65 . . Atlas-SNP NLRP5 126206 hgsc.bcm.edu hg19 19 56539531 56539531 + Silent SNP C C T novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . NLRP5 NM_153447 exon7 c.C1932T p.D644D CGAAGACGTAAGG . 75.0 8.0 80.0 0.0 . 217 . . Atlas-SNP ZNF814 730051 hgsc.bcm.edu hg19 19 58386258 58386258 + Missense_Mutation SNP C C A novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 ZNF814,NS,carcinoma,0,1 ZNF814 NM_001144989 exon3 c.G500T p.G167V GACTCCCCTGACA . 310.0 159.0 327.0 0.0 . 93 . . Atlas-SNP OR5AU1 390445 hgsc.bcm.edu hg19 14 21623894 21623895 + Frame_Shift_Ins INS - - GA novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . OR5AU1 NM_001004731 exon1 c.291_292insTC p.F97fs . . 149.0 11.0 136.0 0.0 . 46 . . Atlas-INDEL HPGD 3248 hgsc.bcm.edu hg19 4 175414376 175414376 + Frame_Shift_Del DEL T T - novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . HPGD NM_000860 exon6 c.589delG p.E197fs . . 56.0 37.0 66.0 0.0 . 19 . . Atlas-INDEL OR5AU1 390445 hgsc.bcm.edu hg19 14 21623890 21623890 + Frame_Shift_Del DEL G G - novel TCGA-CC-A8HS-01A-11D-A35Z-10 TCGA-CC-A8HS-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq eec73def-9c6d-487a-b4b5-d9e879138027 4de9ebd4-2594-4178-b695-344708a55698 . OR5AU1 NM_001004731 exon1 c.296delT p.L99fs . . 149.0 11.0 134.0 0.0 . 46 . . Atlas-INDEL