Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm IL23R 149233 hgsc.bcm.edu hg19 1 67724414 67724414 + Missense_Mutation SNP T T G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . IL23R NM_144701 exon11 c.T1493G p.L498R GCCATCTCAGCAA . 169.0 79.0 257.0 0.0 . 52 . . Atlas-SNP ELTD1 64123 hgsc.bcm.edu hg19 1 79472325 79472325 + Silent SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ELTD1 NM_022159 exon1 c.G15T p.P5P TAGGAGCGGGAGG . 178.0 81.0 138.0 0.0 . 143 . . Atlas-SNP AGL 178 hgsc.bcm.edu hg19 1 100356775 100356775 + Splice_Site SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . AGL NM_000642 exon22 c.2813-1G>T . TTTTCAGGTTTAA . 80.0 37.0 62.0 0.0 . 137 . . Atlas-SNP AGL 178 hgsc.bcm.edu hg19 1 100356784 100356784 + Missense_Mutation SNP T T G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . AGL NM_000644 exon22 c.T2821G p.S941A TTAATGTCTGTAT . 86.0 41.0 70.0 0.0 . 137 . . Atlas-SNP ADORA3 140 hgsc.bcm.edu hg19 1 112031572 112031572 + Missense_Mutation SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ADORA3 NM_020683 exon3 c.G532T p.A178S AGTGGGCATTGTA . 280.0 128.0 237.0 0.0 . 104 . . Atlas-SNP PRRX1 5396 hgsc.bcm.edu hg19 1 170633465 170633465 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PRRX1 NM_006902 exon1 c.G106T p.V36F TTCTCCGTCAGTC . 356.0 209.0 259.0 0.0 . 81 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181701871 181701871 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . CACNA1E NM_001205293 exon20 c.G2649T p.W883C ACCATGGCTGGCC . 231.0 132.0 159.0 0.0 . 778 . . Atlas-SNP F13B 2165 hgsc.bcm.edu hg19 1 197032133 197032133 + Missense_Mutation SNP T T C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . F13B NM_001994 exon2 c.A119G p.Y40C AAAGTATAGTAAT . 227.0 121.0 134.0 0.0 . 137 . . Atlas-SNP NAV1 89796 hgsc.bcm.edu hg19 1 201752875 201752875 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . NAV1 NM_020443 exon7 c.G2699A p.S900N TCCCCAGCAGTAC . 111.0 34.0 57.0 0.0 . 143 . . Atlas-SNP ELF3 1999 hgsc.bcm.edu hg19 1 201982370 201982370 + Missense_Mutation SNP C C G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ELF3 NM_001114309 exon7 c.C749G p.P250R GCCGGCCCCGAAA . 258.0 161.0 185.0 0.0 . 92 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216173882 216173882 + Missense_Mutation SNP G G C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . USH2A NM_206933 exon33 c.C6348G p.H2116Q AAACTGGTGGGGT . 119.0 39.0 87.0 0.0 . 1168 . . Atlas-SNP EXO1 9156 hgsc.bcm.edu hg19 1 242048690 242048690 + Missense_Mutation SNP A A C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . EXO1 NM_006027 exon13 c.A2286C p.R762S TGCCAGAGCCAGT . 133.0 62.0 87.0 0.0 . 103 . . Atlas-SNP OR2T12 127064 hgsc.bcm.edu hg19 1 248458206 248458206 + Silent SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . OR2T12 NM_001004692 exon1 c.C675T p.L225L GCGCATGAGCAGA . 497.0 188.0 322.0 0.0 . 113 . . Atlas-SNP DNMT3A 1788 hgsc.bcm.edu hg19 2 25467466 25467466 + Missense_Mutation SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . DNMT3A NM_175629 exon14 c.G1610T p.C537F ATGGTGCAGTAGG . 56.0 24.0 73.0 0.0 . 1807 . . Atlas-SNP DNMT3A 1788 hgsc.bcm.edu hg19 2 25467523 25467523 + Splice_Site SNP T T C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . DNMT3A NM_153759 exon11 c.988-2A>G . CAGTTCTAGACAG . 35.0 21.0 62.0 0.0 . 1807 . . Atlas-SNP DQX1 165545 hgsc.bcm.edu hg19 2 74751076 74751076 + Missense_Mutation SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . DQX1 NM_133637 exon4 c.G790A p.V264M CTAGCACATCTCC . 68.0 26.0 102.0 0.0 . 95 . . Atlas-SNP HTRA2 27429 hgsc.bcm.edu hg19 2 74757927 74757927 + Silent SNP A A G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . HTRA2 NM_013247 exon2 c.A690G p.A230A CATCGCAACGCTG . 49.0 25.0 64.0 0.0 . 22 . . Atlas-SNP ACTR1B 10120 hgsc.bcm.edu hg19 2 98275016 98275016 + Silent SNP A A C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 ACTR1B,caecum,carcinoma,0,1 ACTR1B NM_005735 exon6 c.T531G p.P177P GGAGTGAGGCATG . 69.0 33.0 96.0 0.0 . 34 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141665624 141665624 + Missense_Mutation SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 LRP1B,NS,carcinoma,0,1 LRP1B NM_018557 exon22 c.G3342T p.W1114C ACACACCCATGCT . 183.0 96.0 150.0 0.0 . 1315 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179496878 179496878 + Silent SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . TTN NM_001267550 exon236 c.G43743A p.V14581V ACCAAGCACAGTG . 59.0 32.0 64.0 0.0 . 18412 . . Atlas-SNP ITGA4 3676 hgsc.bcm.edu hg19 2 182323028 182323028 + Silent SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ITGA4 NM_000885 exon2 c.C303T p.C101C GACGTGCGAACAG . 117.0 44.0 140.0 0.0 . 142 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266098 41266098 + Missense_Mutation SNP A A T rs121913396 bycluster TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 CTNNB1,gallbladder,other,+1,128 CTNNB1 NM_001098209 exon3 c.A95T p.D32V ACCTGGACTCTGG . 164.0 41.0 188.0 0.0 . 4904 . . Atlas-SNP PTPN23 25930 hgsc.bcm.edu hg19 3 47449186 47449186 + Splice_Site SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PTPN23 NM_015466 exon13 c.1004-1G>T . CCCCCAGGAGCCC . 91.0 54.0 91.0 0.0 . 85 . . Atlas-SNP GMPPB 29925 hgsc.bcm.edu hg19 3 49759578 49759578 + Silent SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . GMPPB NM_021971 exon8 c.C771T p.D257D ACTTGGGTCCTGA . 69.0 25.0 76.0 0.0 . 14 . . Atlas-SNP APPL1 26060 hgsc.bcm.edu hg19 3 57271521 57271521 + Missense_Mutation SNP A A G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . APPL1 NM_012096 exon3 c.A155G p.N52S CATAGAATGAATT . 469.0 149.0 548.0 0.0 . 59 . . Atlas-SNP C3orf17 25871 hgsc.bcm.edu hg19 3 112732231 112732231 + Missense_Mutation SNP T T C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . C3orf17 NM_015412 exon4 c.A361G p.T121A CTTTGGTAGTTAA . 541.0 335.0 544.0 0.0 . 37 . . Atlas-SNP MECOM 2122 hgsc.bcm.edu hg19 3 168806927 168806927 + Missense_Mutation SNP T T C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . MECOM NM_004991 exon16 c.A3446G p.H1149R CTTATATGATCTA . 123.0 74.0 111.0 0.0 . 216 . . Atlas-SNP NCEH1 57552 hgsc.bcm.edu hg19 3 172351796 172351796 + Silent SNP T T C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . NCEH1 NM_001146276 exon5 c.A816G p.P272P ATAAGATGGTGTG . 134.0 42.0 121.0 0.0 . 63 . . Atlas-SNP PCDH7 5099 hgsc.bcm.edu hg19 4 30724307 30724307 + Silent SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PCDH7 NM_032457 exon1 c.G1263T p.G421G GATTGGGCGCATC . 150.0 57.0 189.0 0.0 . 215 . . Atlas-SNP DKK2 27123 hgsc.bcm.edu hg19 4 107845304 107845304 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . DKK2 NM_014421 exon4 c.C587T p.A196V TGACGAGCACAGC . 127.0 55.0 206.0 0.0 . 96 . . Atlas-SNP QRFPR 84109 hgsc.bcm.edu hg19 4 122251638 122251638 + Missense_Mutation SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . QRFPR NM_198179 exon5 c.G838T p.A280S AGAGAGCCACCAC . 64.0 27.0 119.0 0.0 . 65 . . Atlas-SNP MEGF10 84466 hgsc.bcm.edu hg19 5 126774132 126774132 + Silent SNP A A C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . MEGF10 NM_032446 exon18 c.A2106C p.P702P TTCAGCATGTCCA . 95.0 28.0 76.0 0.0 . 152 . . Atlas-SNP PCDHB2 56133 hgsc.bcm.edu hg19 5 140476384 140476384 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PCDHB2 NM_018936 exon1 c.G2010T p.Q670H CTCCCAGCCCTAC . 22.0 9.0 17.0 0.0 . 163 . . Atlas-SNP PCDHB2 56133 hgsc.bcm.edu hg19 5 140476385 140476385 + Missense_Mutation SNP C C G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PCDHB2 NM_018936 exon1 c.C2011G p.P671A TCCCAGCCCTACC . 22.0 10.0 17.0 0.0 . 163 . . Atlas-SNP PCDHGB7 56099 hgsc.bcm.edu hg19 5 140798888 140798888 + Missense_Mutation SNP T T G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PCDHGB7 NM_018927 exon1 c.T1462G p.S488A CGTGTCTCCTACT . 111.0 50.0 86.0 0.0 . 117 . . Atlas-SNP ZNF184 7738 hgsc.bcm.edu hg19 6 27419760 27419760 + Silent SNP T T C rs371959671 TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ZNF184 NM_007149 exon6 c.A1578G p.Q526Q TTTCTCTTGAGTA . 107.0 28.0 51.0 0.0 . 89 . . Atlas-SNP HLA-G 3135 hgsc.bcm.edu hg19 6 29797329 29797329 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . HLA-G NM_002127 exon5 c.G754T p.V252L CAGGACGTGGAGC . 172.0 44.0 81.0 0.0 . 90 . . Atlas-SNP KLC4 89953 hgsc.bcm.edu hg19 6 43039049 43039049 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . KLC4 NM_201523 exon9 c.G1246T p.A416S GCTGAGGCTGAGA . 186.0 123.0 107.0 0.0 . 89 . . Atlas-SNP FILIP1 27145 hgsc.bcm.edu hg19 6 76024770 76024770 + Nonsense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . FILIP1 NM_015687 exon5 c.C778T p.Q260X CAAGTTGTTCAAT . 48.0 42.0 80.0 0.0 . 173 . . Atlas-SNP C6orf170 221322 hgsc.bcm.edu hg19 6 121434235 121434235 + Nonsense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . C6orf170 NM_152730 exon28 c.C3142T p.Q1048X TTTGCTGCTGTTT . 89.0 79.0 183.0 0.0 . 146 . . Atlas-SNP L3MBTL3 84456 hgsc.bcm.edu hg19 6 130374111 130374111 + Missense_Mutation SNP A A C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . L3MBTL3 NM_032438 exon7 c.A557C p.D186A AGGAGGATGGAGA . 72.0 61.0 81.0 0.0 . 99 . . Atlas-SNP UST 10090 hgsc.bcm.edu hg19 6 149285691 149285691 + Missense_Mutation SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 UST,colon,carcinoma,0,1 UST NM_005715 exon5 c.C673A p.R225S GAGGAGCGCTACC . 56.0 50.0 76.0 0.0 . 42 . . Atlas-SNP NPC1L1 29881 hgsc.bcm.edu hg19 7 44573141 44573141 + Missense_Mutation SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 NPC1L1,bladder,carcinoma,0,1 NPC1L1 NM_001101648 exon8 c.G2298A p.M766I AGCTGGCATGGGG . 190.0 112.0 188.0 0.0 . 141 . . Atlas-SNP GNAT3 346562 hgsc.bcm.edu hg19 7 80123960 80123960 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . GNAT3 NM_001102386 exon2 c.C122T p.A41V TCTCCTGCTCCTG . 316.0 103.0 296.0 0.0 . 65 . . Atlas-SNP DYNC1I1 1780 hgsc.bcm.edu hg19 7 95705439 95705439 + Missense_Mutation SNP A A G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . DYNC1I1 NM_004411 exon15 c.A1631G p.H544R CCGTGCATCCTGC . 89.0 66.0 101.0 0.0 . 111 . . Atlas-SNP RAD54B 25788 hgsc.bcm.edu hg19 8 95399347 95399347 + Missense_Mutation SNP T T C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . RAD54B NM_012415 exon11 c.A1850G p.K617R AGACTCTTTTCTT . 92.0 54.0 55.0 0.0 . 88 . . Atlas-SNP LRP12 29967 hgsc.bcm.edu hg19 8 105511591 105511591 + Silent SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 LRP12,NS,carcinoma,0,1 LRP12 NM_013437 exon4 c.G429T p.S143S GTCATCCGAATGA . 147.0 41.0 96.0 0.0 . 124 . . Atlas-SNP EIF3H 8667 hgsc.bcm.edu hg19 8 117658834 117658834 + Silent SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . EIF3H NM_003756 exon7 c.G837A p.Q279Q GCGACGCTGCTGA . 50.0 20.0 60.0 0.0 . 28 . . Atlas-SNP EXOSC3 51010 hgsc.bcm.edu hg19 9 37783971 37783971 + Silent SNP T T C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . EXOSC3 NM_016042 exon2 c.A414G p.P138P AGAAGCTGGCTCA . 41.0 17.0 82.0 0.0 . 8 . . Atlas-SNP NR4A3 8013 hgsc.bcm.edu hg19 9 102595735 102595735 + Missense_Mutation SNP G G C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . NR4A3 NM_173200 exon6 c.G1286C p.R429T ATTCCAGAGTAAG . 108.0 48.0 123.0 0.0 . 80 . . Atlas-SNP RGS3 5998 hgsc.bcm.edu hg19 9 116268749 116268749 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . RGS3 NM_144488 exon13 c.G1061A p.C354Y GGAAATGTGTGGA . 176.0 64.0 307.0 0.0 . 251 . . Atlas-SNP NPFFR1 64106 hgsc.bcm.edu hg19 10 72015502 72015502 + Silent SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . NPFFR1 NM_022146 exon4 c.G504T p.L168L CAGCGCCAGGGCC . 97.0 32.0 105.0 0.0 . 21 . . Atlas-SNP PRF1 5551 hgsc.bcm.edu hg19 10 72360312 72360312 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PRF1 NM_001083116 exon2 c.C347A p.A116D GCCACAGCTTCAG . 65.0 20.0 88.0 0.0 . 64 . . Atlas-SNP KCNIP2 30819 hgsc.bcm.edu hg19 10 103589645 103589645 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . KCNIP2 NM_014591 exon3 c.C224A p.A75D GCTGGGGCGGCTA . 28.0 13.0 39.0 0.0 . 45 . . Atlas-SNP PCGF6 84108 hgsc.bcm.edu hg19 10 105104793 105104793 + Missense_Mutation SNP A A G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PCGF6 NM_001011663 exon6 c.T770C p.L257P AACTCCAGTAATA . 142.0 44.0 171.0 0.0 . 23 . . Atlas-SNP DMBT1 1755 hgsc.bcm.edu hg19 10 124335940 124335940 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . DMBT1 NM_007329 exon7 c.G309T p.R103S CCTGAGGCTGGTG . 37.0 13.0 30.0 0.0 . 677 . . Atlas-SNP CTBP2 1488 hgsc.bcm.edu hg19 10 126714944 126714944 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . CTBP2 NM_022802 exon1 c.C1385T p.A462V GTCAAGGCCACCC . 58.0 36.0 67.0 0.0 . 100 . . Atlas-SNP GUCY1A2 2977 hgsc.bcm.edu hg19 11 106810594 106810594 + Silent SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . GUCY1A2 NM_000855 exon4 c.G798T p.V266V CACTTCCACATCC . 71.0 50.0 88.0 0.0 . 180 . . Atlas-SNP ZNF202 7753 hgsc.bcm.edu hg19 11 123600474 123600474 + Silent SNP C C A rs143645376 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ZNF202 NM_003455 exon5 c.G462T p.V154V AGGCTCCACTCCT . 51.0 11.0 72.0 0.0 . 72 . C|0.998;T|0.002 Atlas-SNP GALNT8 26290 hgsc.bcm.edu hg19 12 4848403 4848403 + Missense_Mutation SNP C C G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . GALNT8 NM_017417 exon3 c.C584G p.S195C CTCTGTCCATTAT . 75.0 37.0 112.0 0.0 . 89 . . Atlas-SNP A2ML1 144568 hgsc.bcm.edu hg19 12 8988264 8988264 + Splice_Site SNP T T C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . A2ML1 NM_144670 exon6 c.643+2T>C . ATATGGTAGGTGG . 80.0 32.0 133.0 0.0 . 199 . . Atlas-SNP HOXC6 3223 hgsc.bcm.edu hg19 12 54423561 54423561 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . HOXC6 NM_004503 exon2 c.G523T p.A175S GAGATCGCCAACG . 50.0 25.0 86.0 0.0 . 30 . . Atlas-SNP SMAD9 4093 hgsc.bcm.edu hg19 13 37446983 37446983 + Missense_Mutation SNP C C A rs200651392 by1000genomes;alternate_allele TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 SMAD9_ENST00000379826,NS,carcinoma,0,2 SMAD9 NM_005905 exon3 c.G482T p.R161L GCGCTGCGGAACT . 65.0 22.0 89.0 0.0 . 91 . C|0.999;T|0.001 Atlas-SNP DACH1 1602 hgsc.bcm.edu hg19 13 72049330 72049330 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . DACH1 NM_080759 exon10 c.C2032A p.P678T TCTCTGGGGTCAG . 59.0 26.0 103.0 0.0 . 123 . . Atlas-SNP C14orf93 60686 hgsc.bcm.edu hg19 14 23456717 23456717 + Missense_Mutation SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . C14orf93 NM_021944 exon7 c.G1324A p.A442T GGCGGGCCACCCA . 72.0 49.0 62.0 0.0 . 33 . . Atlas-SNP NFKBIA 4792 hgsc.bcm.edu hg19 14 35871694 35871694 + Missense_Mutation SNP T T A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . NFKBIA NM_020529 exon5 c.A812T p.Q271L GTCAGCTGGCCCA . 91.0 35.0 106.0 0.0 . 28 . . Atlas-SNP MIS18BP1 55320 hgsc.bcm.edu hg19 14 45693923 45693923 + Missense_Mutation SNP T T C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . MIS18BP1 NM_018353 exon11 c.A1867G p.I623V TATCAATGGATAC . 63.0 15.0 66.0 0.0 . 92 . . Atlas-SNP KCNH5 27133 hgsc.bcm.edu hg19 14 63174666 63174666 + Missense_Mutation SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . KCNH5 NM_139318 exon11 c.G2527T p.D843Y TGGGGTCCTCAGA . 117.0 66.0 111.0 0.0 . 320 . . Atlas-SNP KCNH5 27133 hgsc.bcm.edu hg19 14 63174667 63174667 + Missense_Mutation SNP C C G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . KCNH5 NM_139318 exon11 c.G2526C p.E842D GGGGTCCTCAGAC . 119.0 67.0 112.0 0.0 . 320 . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68273376 68273376 + Silent SNP T T C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ZFYVE26 NM_015346 exon6 c.A903G p.L301L AGGATCTAGATGA . 80.0 47.0 95.0 0.0 . 223 . . Atlas-SNP TRIP11 9321 hgsc.bcm.edu hg19 14 92472209 92472209 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . TRIP11 NM_004239 exon11 c.C2111A p.S704Y TCCAGAGAAAGCT . 114.0 40.0 131.0 0.0 . 184 . . Atlas-SNP MAGEL2 54551 hgsc.bcm.edu hg19 15 23889234 23889234 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . MAGEL2 NM_019066 exon1 c.C3656T p.A1219V GCGAGCGCTTCAA . 67.0 35.0 81.0 0.0 . 108 . . Atlas-SNP DNAJC17 55192 hgsc.bcm.edu hg19 15 41060161 41060161 + Missense_Mutation SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . DNAJC17 NM_018163 exon11 c.G892A p.D298N CCTGGTCTTCCTG . 21.0 16.0 14.0 0.0 . 18 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48888574 48888574 + Silent SNP A A G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . FBN1 NM_000138 exon6 c.T444C p.P148P ACAAACAGCTGTA . 55.0 11.0 63.0 0.0 . 310 . . Atlas-SNP TRIP4 9325 hgsc.bcm.edu hg19 15 64686298 64686298 + Missense_Mutation SNP G G T rs115051562 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . TRIP4 NM_016213 exon2 c.G255T p.Q85H GCAGCAGTGCTTC . 155.0 8.0 180.0 0.0 . 43 . G|0.986;A|0.014 Atlas-SNP GRIN2A 2903 hgsc.bcm.edu hg19 16 9934503 9934503 + Splice_Site SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . GRIN2A NM_001134407 exon8 c.1651+1G>T . CACACACCTAGAA . 137.0 41.0 138.0 0.0 . 366 . . Atlas-SNP TMC7 79905 hgsc.bcm.edu hg19 16 19049311 19049311 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . TMC7 NM_024847 exon8 c.G1121A p.G374E TTTTAGGGGCATG . 80.0 26.0 108.0 0.0 . 75 . . Atlas-SNP VWA3A 146177 hgsc.bcm.edu hg19 16 22149725 22149725 + Silent SNP A A G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . VWA3A NM_173615 exon22 c.A2184G p.V728V AAAAGTACTGGGA . 62.0 37.0 85.0 0.0 . 115 . . Atlas-SNP SCNN1G 6340 hgsc.bcm.edu hg19 16 23226546 23226546 + Missense_Mutation SNP C C A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . SCNN1G NM_001039 exon13 c.C1706A p.A569D AGAAAGCCAAGGA . 64.0 43.0 53.0 0.0 . 82 . . Atlas-SNP CES1 1066 hgsc.bcm.edu hg19 16 55862715 55862715 + Nonsense_Mutation SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . CES1 NM_001025195 exon2 c.G224A p.W75X AAGCTCCATGGTT . 131.0 12.0 153.0 0.0 . 78 . . Atlas-SNP CES2 8824 hgsc.bcm.edu hg19 16 66976621 66976621 + Silent SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . CES2 NM_003869 exon10 c.G1545A p.P515P GCCACCGCACATG . 99.0 31.0 76.0 0.0 . 43 . . Atlas-SNP CTCF 10664 hgsc.bcm.edu hg19 16 67650677 67650677 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . CTCF NM_006565 exon5 c.G982T p.D328Y GACTGCGACATGG . 134.0 36.0 112.0 0.0 . 193 . . Atlas-SNP ZNF23 7571 hgsc.bcm.edu hg19 16 71482852 71482852 + Missense_Mutation SNP G G C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ZNF23 NM_145911 exon6 c.C1076G p.T359R TCTCCTGTGTGGA . 60.0 23.0 77.0 0.0 . 65 . . Atlas-SNP CRISPLD2 83716 hgsc.bcm.edu hg19 16 84884214 84884214 + Missense_Mutation SNP A A G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . CRISPLD2 NM_031476 exon5 c.A533G p.N178S CTGTGAACACCTG . 85.0 20.0 96.0 0.0 . 36 . . Atlas-SNP KRTAP4-7 100132476 hgsc.bcm.edu hg19 17 39240735 39240735 + Missense_Mutation SNP A A C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . KRTAP4-7 NM_033061 exon1 c.A277C p.S93R ATGTCCAGCTGCT . 40.0 34.0 21.0 0.0 . 49 . . Atlas-SNP C19orf21 126353 hgsc.bcm.edu hg19 19 763554 763554 + Missense_Mutation SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . C19orf21 NM_173481 exon5 c.G2004T p.W668C GCGCTGGGAATCC . 26.0 12.0 43.0 0.0 . 56 . . Atlas-SNP PRKCSH 5589 hgsc.bcm.edu hg19 19 11553327 11553327 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PRKCSH NM_001001329 exon7 c.G595A p.E199K CTGTGGGAAGGTA . 40.0 16.0 66.0 0.0 . 55 . . Atlas-SNP ZNF793 390927 hgsc.bcm.edu hg19 19 38028629 38028629 + Missense_Mutation SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ZNF793 NM_001013659 exon8 c.C1069T p.H357Y AATAAACATTGGA . 51.0 18.0 98.0 0.0 . 50 . . Atlas-SNP CKM 1158 hgsc.bcm.edu hg19 19 45810804 45810804 + Silent SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . CKM NM_001824 exon7 c.C882A p.G294G ATGCACGCCTCCA . 42.0 16.0 65.0 0.0 . 40 . . Atlas-SNP ALDH16A1 126133 hgsc.bcm.edu hg19 19 49962955 49962955 + Missense_Mutation SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ALDH16A1 NM_001145396 exon4 c.C349T p.R117W CACCAGCGGCTGC . 65.0 27.0 90.0 0.0 . 54 . . Atlas-SNP NLRP4 147945 hgsc.bcm.edu hg19 19 56372857 56372857 + Silent SNP C C A rs200258143 by1000genomes;alternate_allele TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . NLRP4 NM_134444 exon4 c.C1962A p.T654T GTCGACCTTTGTG . 43.0 20.0 85.0 0.0 . 331 . C|1.000;G|0.000 Atlas-SNP ZIM3 114026 hgsc.bcm.edu hg19 19 57647323 57647323 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ZIM3 NM_052882 exon5 c.C382T p.P128S CCAGTGGAAGTAT . 84.0 40.0 146.0 0.0 . 107 . . Atlas-SNP ZNF417 147687 hgsc.bcm.edu hg19 19 58420786 58420786 + Missense_Mutation SNP T T A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ZNF417 NM_152475 exon3 c.A860T p.Q287L ACTCGCTGATGTT . 188.0 72.0 270.0 0.0 . 44 . . Atlas-SNP ZSCAN18 65982 hgsc.bcm.edu hg19 19 58597611 58597611 + Silent SNP G G A rs147947490 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ZSCAN18 NM_001145542 exon6 c.C936T p.D312D GGCAGCGTCAGGC . 102.0 48.0 208.0 0.0 . 104 . G|0.993;C|0.007 Atlas-SNP CST9 128822 hgsc.bcm.edu hg19 20 23584366 23584366 + Silent SNP T T A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . CST9 NM_001008693 exon2 c.A261T p.R87R CTTACCTCGCCAC . 33.0 16.0 41.0 0.0 . 26 . . Atlas-SNP AAR2 25980 hgsc.bcm.edu hg19 20 34832689 34832689 + Silent SNP G G T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . . NM_001271874 exon3 c.G828T p.R276R GAAGCGGCTCCTG . 189.0 129.0 137.0 0.0 . . . . Atlas-SNP CHD6 84181 hgsc.bcm.edu hg19 20 40049157 40049157 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . CHD6 NM_032221 exon31 c.C6118T p.H2040Y GACTATGGCAGTT . 39.0 8.0 36.0 0.0 . 312 . . Atlas-SNP DYRK1A 1859 hgsc.bcm.edu hg19 21 38865317 38865317 + Splice_Site SNP A A T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . DYRK1A NM_101395 exon9 c.952-2A>T . TATTTCAGATATA . 62.0 31.0 68.0 0.0 . 85 . . Atlas-SNP PPM1F 9647 hgsc.bcm.edu hg19 22 22277762 22277762 + Silent SNP C C T novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PPM1F NM_014634 exon8 c.G1068A p.L356L GGCAAGCAGCAGG . 139.0 52.0 106.0 0.0 . 34 . . Atlas-SNP ARSF 416 hgsc.bcm.edu hg19 X 3019189 3019189 + Silent SNP A A G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ARSF NM_004042 exon8 c.A1029G p.T343T CTTTACATCAGAT . 131.0 110.0 276.0 0.0 . 97 . . Atlas-SNP PTCHD1 139411 hgsc.bcm.edu hg19 X 23410846 23410846 + Missense_Mutation SNP G G A novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . PTCHD1 NM_173495 exon3 c.G1211A p.C404Y TCTGCTGCAATTC . 45.0 40.0 69.0 0.0 . 213 . . Atlas-SNP SAGE1 55511 hgsc.bcm.edu hg19 X 134988645 134988645 + Missense_Mutation SNP C C G novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . SAGE1 NM_018666 exon7 c.C671G p.T224S TGTTGACTCTTCG . 96.0 89.0 134.0 0.0 . 160 . . Atlas-SNP TBL1Y 90665 hgsc.bcm.edu hg19 Y 6939610 6939610 + Missense_Mutation SNP A A C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . TBL1Y NM_134258 exon10 c.A742C p.T248P GATGGAACACTAT . 38.0 34.0 94.0 0.0 . 15 . . Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 15380 15380 + Missense_Mutation SNP A A C novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . . ENST00000361789 exon1 c.A634C p.T212P GGAATCACCTCCC . 26.0 26.0 10.0 0.0 . . . . Atlas-SNP ANKEF1 63926 hgsc.bcm.edu hg19 20 10030419 10030424 + In_Frame_Del DEL ATTTAA ATTTAA - novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 ATTTAA ATTTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . . NM_198798 exon6 c.1201_1206del p.401_402del . . 81.0 27.0 126.0 0.0 . . . . Atlas-Indel,Pindel IFNA14 3448 hgsc.bcm.edu hg19 9 21239412 21239412 + Frame_Shift_Del DEL G G - novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . IFNA14 NM_002172 exon1 c.524delT p.L175fs . . 128.0 45.0 159.0 0.0 . 29 . . Atlas-Indel,Pindel LRIG3 121227 hgsc.bcm.edu hg19 12 59284530 59284539 + Frame_Shift_Del DEL AAACTCTTTC AAACTCTTTC - novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 AAACTCTTTC AAACTCTTTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . LRIG3 NM_153377 exon4 c.424_433del p.142_145del . . 49.0 12.0 86.0 0.0 . 120 . . Atlas-Indel,Pindel ZNF507 22847 hgsc.bcm.edu hg19 19 32845521 32845524 + Frame_Shift_Del DEL AGAA AGAA - novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 AGAA AGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . ZNF507 NM_001136156 exon3 c.1784_1787del p.595_596del . . 72.0 37.0 116.0 0.0 . 92 . . Atlas-Indel,Pindel TUBB 203068 hgsc.bcm.edu hg19 6 30691141 30691162 + Frame_Shift_Del DEL GGGCCAAAGGCCACTACACAGA GGGCCAAAGGCCACTACACAGA - novel TCGA-CC-A7IL-01A-11D-A33Q-10 TCGA-CC-A7IL-10A-01D-A33Q-10 GGGCCAAAGGCCACTACACAGA GGGCCAAAGGCCACTACACAGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5e30b274-44cd-410b-a15b-08a2080a3ba4 f75b1d6b-8497-4452-b100-4b5bda7ff6e7 . TUBB NM_178014 exon4 c.301_322del p.101_108del . . 293.0 38.0 191.0 0.0 . 30 . . Atlas-Indel,Pindel