Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MXRA8 54587 hgsc.bcm.edu hg19 1 1290242 1290242 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MXRA8 NM_032348 exon5 c.C769A p.L257M TACGCAGTGAGAA . 118.0 49.0 111.0 0.0 . 28 . . Atlas-SNP CHD5 26038 hgsc.bcm.edu hg19 1 6206301 6206301 + Nonsense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CHD5 NM_015557 exon11 c.G1773A p.W591X CATCATCCACTCT . 73.0 15.0 57.0 0.0 . 267 . . Atlas-SNP LRRC38 126755 hgsc.bcm.edu hg19 1 13839949 13839949 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LRRC38 NM_001010847 exon1 c.T140C p.L47P CTGGGCAGCCCGC . 52.0 19.0 46.0 0.0 . 12 . . Atlas-SNP PRDM2 7799 hgsc.bcm.edu hg19 1 14108238 14108238 + Silent SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PRDM2 NM_015866 exon8 c.A3948T p.T1316T TGTGACAGCCACA . 83.0 38.0 79.0 0.0 . 147 . . Atlas-SNP EPHA8 2046 hgsc.bcm.edu hg19 1 22895781 22895781 + Splice_Site SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . EPHA8 NM_020526 exon2 c.95-1G>A . TTTACAGTGAATT . 55.0 11.0 62.0 0.0 . 221 . . Atlas-SNP ASAP3 55616 hgsc.bcm.edu hg19 1 23762387 23762387 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ASAP3 NM_017707 exon17 c.A1706C p.N569T TGCCCATTGGCAA . 117.0 21.0 114.0 0.0 . 65 . . Atlas-SNP GPR3 2827 hgsc.bcm.edu hg19 1 27720703 27720703 + Missense_Mutation SNP G G C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GPR3 NM_005281 exon2 c.G401C p.R134P TCGACCGCTACCT . 31.0 13.0 39.0 0.0 . 23 . . Atlas-SNP SPOCD1 90853 hgsc.bcm.edu hg19 1 32265012 32265012 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SPOCD1 NM_144569 exon7 c.C1858A p.L620I TCCATAGTACCTC . 238.0 110.0 191.0 0.0 . 109 . . Atlas-SNP ZBTB8B 728116 hgsc.bcm.edu hg19 1 32950917 32950917 + Silent SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ZBTB8B NM_001145720 exon4 c.A1386C p.P462P CTGGCCAATCTAT . 148.0 34.0 107.0 0.0 . 28 . . Atlas-SNP AGO3 192669 hgsc.bcm.edu hg19 1 36439043 36439043 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . . NM_024852 exon5 c.A589T p.R197W GGGGGCAGGGAAG . 177.0 27.0 110.0 0.0 . . . . Atlas-SNP SMAP2 64744 hgsc.bcm.edu hg19 1 40882562 40882562 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SMAP2 NM_022733 exon9 c.A958G p.M320V GTAGGCATGGTTG . 276.0 40.0 213.0 0.0 . 48 . . Atlas-SNP CCDC30 728621 hgsc.bcm.edu hg19 1 43110399 43110399 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CCDC30 NM_001080850 exon13 c.A1811T p.Q604L AATTACAGGAAAA . 30.0 9.0 21.0 0.0 . 78 . . Atlas-SNP ST3GAL3 6487 hgsc.bcm.edu hg19 1 44395833 44395833 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ST3GAL3 NM_001270463 exon8 c.A584G p.K195R AGAGAAAGAGTTT . 61.0 15.0 57.0 0.0 . 56 . . Atlas-SNP DMRTB1 63948 hgsc.bcm.edu hg19 1 53932266 53932266 + Splice_Site SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DMRTB1 NM_033067 exon4 c.962-2A>T . CTTCACAGATGAC . 233.0 112.0 209.0 0.0 . 38 . . Atlas-SNP YIPF1 54432 hgsc.bcm.edu hg19 1 54332055 54332055 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . YIPF1 NM_018982 exon9 c.A649G p.I217V ACAGTATCTGAAA . 313.0 136.0 282.0 0.0 . 30 . . Atlas-SNP ELTD1 64123 hgsc.bcm.edu hg19 1 79411969 79411969 + Silent SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ELTD1 NM_022159 exon3 c.C315A p.T105T ACAGACGGTTCCA . 128.0 54.0 101.0 0.0 . 143 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94543350 94543350 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 ABCA4,NS,carcinoma,0,1 ABCA4 NM_000350 exon11 c.A1450G p.K484E GGCCCTTGTAGAG . 129.0 37.0 126.0 0.0 . 275 . . Atlas-SNP PTBP2 58155 hgsc.bcm.edu hg19 1 97271990 97271990 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PTBP2 NM_021190 exon10 c.A1060G p.S354G CCCCAAAGTCTGT . 65.0 23.0 59.0 0.0 . 62 . . Atlas-SNP OLFM3 118427 hgsc.bcm.edu hg19 1 102269846 102269846 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OLFM3 NM_058170 exon6 c.T1325A p.V442E AACAGCACCTGGT . 86.0 33.0 67.0 0.0 . 178 . . Atlas-SNP SLC25A24 29957 hgsc.bcm.edu hg19 1 108742645 108742645 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SLC25A24 NM_013386 exon1 c.T116A p.V39E ATGTCCACCACTC . 108.0 63.0 76.0 0.0 . 65 . . Atlas-SNP PHTF1 10745 hgsc.bcm.edu hg19 1 114240970 114240970 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PHTF1 NM_006608 exon17 c.A2182T p.N728Y AGGGATTCATTGT . 70.0 18.0 67.0 0.0 . 69 . . Atlas-SNP IGSF3 3321 hgsc.bcm.edu hg19 1 117142910 117142910 + Missense_Mutation SNP G G C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . IGSF3 NM_001542 exon8 c.C1742G p.S581C TCAAAGGAGTCGC . 44.0 19.0 46.0 0.0 . 294 . . Atlas-SNP PDE4DIP 9659 hgsc.bcm.edu hg19 1 144879542 144879542 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 PDE4DIP,NS,carcinoma,0,2 PDE4DIP NM_014644 exon27 c.T3908C p.L1303P TCCTTGAGGCTGT . 62.0 3.0 41.0 1.0 . 817 . . Atlas-SNP SF3B4 10262 hgsc.bcm.edu hg19 1 149898428 149898428 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SF3B4 NM_005850 exon3 c.C546T p.S182S ACCCTTGGAGTCC . 135.0 25.0 89.0 0.0 . 37 . . Atlas-SNP MRPS21 54460 hgsc.bcm.edu hg19 1 150266814 150266814 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MRPS21 NM_018997 exon1 c.A28T p.R10W ATCGCCAGGACTG . 309.0 27.0 196.0 0.0 . 8 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152284916 152284916 + Missense_Mutation SNP C C G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FLG NM_002016 exon3 c.G2446C p.V816L GTCTTACTCCAGT . 148.0 37.0 124.0 0.0 . 900 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152284917 152284917 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FLG NM_002016 exon3 c.A2445T p.G815G TCTTACTCCAGTG . 150.0 40.0 123.0 0.0 . 900 . . Atlas-SNP FLG2 388698 hgsc.bcm.edu hg19 1 152326656 152326656 + Silent SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FLG2 NM_001014342 exon3 c.C3606A p.S1202S TCCAGTGGACTGA . 124.0 26.0 96.0 0.0 . 431 . . Atlas-SNP SPRR4 163778 hgsc.bcm.edu hg19 1 152944448 152944448 + Nonsense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SPRR4 NM_173080 exon2 c.C82T p.Q28X CCTTGTCAGCCAC . 238.0 69.0 174.0 0.0 . 8 . . Atlas-SNP AQP10 89872 hgsc.bcm.edu hg19 1 154296109 154296109 + Silent SNP G G C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . AQP10 NM_080429 exon5 c.G534C p.L178L CATCCTGGACAGA . 114.0 16.0 98.0 0.0 . 44 . . Atlas-SNP ADAR 103 hgsc.bcm.edu hg19 1 154569745 154569745 + Splice_Site SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ADAR NM_015840 exon6 c.1935-2A>G . GGAACCTGACAGG . 79.0 36.0 63.0 0.0 . 113 . . Atlas-SNP ATP1A2 477 hgsc.bcm.edu hg19 1 160098468 160098468 + Silent SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ATP1A2 NM_000702 exon9 c.C1044A p.R348R CAAGCGCATGGCA . 154.0 31.0 104.0 0.0 . 167 . . Atlas-SNP RCSD1 92241 hgsc.bcm.edu hg19 1 167659345 167659345 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RCSD1 NM_052862 exon4 c.T258A p.I86I TCTGATTGAGAAG . 114.0 39.0 98.0 0.0 . 64 . . Atlas-SNP GPR161 23432 hgsc.bcm.edu hg19 1 168054803 168054803 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GPR161 NM_001267609 exon7 c.A1616C p.E539A CCTTCTTCGATGC . 139.0 67.0 85.0 0.0 . 56 . . Atlas-SNP FAM5B 57795 hgsc.bcm.edu hg19 1 177250137 177250137 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FAM5B NM_021165 exon8 c.A1825C p.S609R GAGGGCAGCTTTC . 84.0 13.0 65.0 0.0 . 191 . . Atlas-SNP ASPM 259266 hgsc.bcm.edu hg19 1 197102525 197102525 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ASPM NM_001206846 exon6 c.A2374T p.R792W ACCGCCTAGCTTC . 175.0 62.0 115.0 0.0 . 444 . . Atlas-SNP IGFN1 91156 hgsc.bcm.edu hg19 1 201196213 201196213 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . IGFN1 NM_001164586 exon23 c.G10990T p.D3664Y AGCACTGACCTGC . 225.0 72.0 171.0 0.0 . 220 . . Atlas-SNP NAV1 89796 hgsc.bcm.edu hg19 1 201757764 201757764 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NAV1 NM_020443 exon10 c.A3164G p.D1055G CGGACGATGGTGA . 48.0 12.0 36.0 0.0 . 143 . . Atlas-SNP TMEM183B 653659 hgsc.bcm.edu hg19 1 202987649 202987649 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . . NM_001079809 exon6 c.A749C p.Q250P ACAGACAGGAACC . 302.0 124.0 250.0 0.0 . . . . Atlas-SNP CR2 1380 hgsc.bcm.edu hg19 1 207649619 207649619 + Silent SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CR2 NM_001006658 exon15 c.G2757T p.G919G TAACGGGAACCAT . 115.0 61.0 79.0 0.0 . 164 . . Atlas-SNP CR2 1380 hgsc.bcm.edu hg19 1 207649620 207649620 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CR2 NM_001006658 exon15 c.A2758C p.N920H AACGGGAACCATA . 117.0 63.0 79.0 0.0 . 164 . . Atlas-SNP TMEM206 55248 hgsc.bcm.edu hg19 1 212558622 212558622 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TMEM206 NM_001198862 exon5 c.G672T p.Q224H CACAGTCTGATTG . 313.0 50.0 225.0 0.0 . 41 . . Atlas-SNP PTPN14 5784 hgsc.bcm.edu hg19 1 214537999 214537999 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PTPN14 NM_005401 exon18 c.G3291T p.Q1097H GACCGACTGGATC . 227.0 36.0 146.0 0.0 . 168 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228550304 228550304 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OBSCN NM_001271223 exon91 c.A21560C p.E7187A ACCAGGAGGTCAC . 278.0 103.0 194.0 0.0 . 2142 . . Atlas-SNP KIF26B 55083 hgsc.bcm.edu hg19 1 245850812 245850812 + Silent SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . KIF26B NM_018012 exon12 c.C4527A p.V1509V GAGGGTCGTGGAT . 213.0 117.0 157.0 0.0 . 343 . . Atlas-SNP OR2L5 81466 hgsc.bcm.edu hg19 1 248186105 248186105 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . . NM_001258284 exon1 c.C856A p.P286T CTCAACCCCATCA . 84.0 34.0 66.0 0.0 . . . . Atlas-SNP CAD 790 hgsc.bcm.edu hg19 2 27455440 27455440 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CAD NM_004341 exon18 c.A2770G p.T924A TGGGGCACCACCC . 164.0 82.0 151.0 0.0 . 199 . . Atlas-SNP SPAST 6683 hgsc.bcm.edu hg19 2 32314626 32314626 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SPAST NM_199436 exon3 c.A538G p.K180E CAAGCTAAAATGA . 103.0 26.0 81.0 0.0 . 61 . . Atlas-SNP FER1L5 90342 hgsc.bcm.edu hg19 2 97335890 97335890 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FER1L5 NM_001113382 exon17 c.A1382T p.Y461F TAGCTTATCGAGG . 134.0 35.0 125.0 0.0 . 113 . . Atlas-SNP TMEM131 23505 hgsc.bcm.edu hg19 2 98429012 98429012 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TMEM131 NM_015348 exon17 c.A1735G p.I579V TTTTTATAGCCAA . 246.0 52.0 191.0 0.0 . 258 . . Atlas-SNP KIAA1211L 343990 hgsc.bcm.edu hg19 2 99449345 99449345 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . . NM_207362 exon4 c.G355T p.D119Y TCCGATCACACAC . 63.0 12.0 64.0 0.0 . . . . Atlas-SNP REV1 51455 hgsc.bcm.edu hg19 2 100058804 100058804 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . REV1 NM_001037872 exon5 c.A478G p.I160V TGGCTATATTGCT . 141.0 33.0 100.0 0.0 . 100 . . Atlas-SNP TGFBRAP1 9392 hgsc.bcm.edu hg19 2 105914979 105914979 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TGFBRAP1 NM_004257 exon3 c.A872C p.Q291P AAGTCCTGTAGGA . 88.0 23.0 83.0 0.0 . 70 . . Atlas-SNP IL36G 56300 hgsc.bcm.edu hg19 2 113742493 113742493 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 IL36G,NS,malignant_melanoma,0,1 IL36G NM_019618 exon5 c.G377T p.R126M CTGGTAGGACCTC . 189.0 43.0 117.0 0.0 . 26 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141459798 141459798 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LRP1B NM_018557 exon39 c.G6214T p.G2072X TCCCTCCAGTCTC . 263.0 60.0 168.0 0.0 . 1315 . . Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152512686 152512686 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NEB NM_004543 exon49 c.T6476C p.M2159T CGATTCATATTCC . 108.0 20.0 95.0 0.0 . 1697 . . Atlas-SNP STK39 27347 hgsc.bcm.edu hg19 2 169020389 169020389 + Silent SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . STK39 NM_013233 exon4 c.T432A p.G144G CATTGAACCTAAG . 91.0 16.0 83.0 0.0 . 95 . . Atlas-SNP PDE11A 50940 hgsc.bcm.edu hg19 2 178769916 178769916 + Splice_Site SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PDE11A NM_001077197 exon5 c.322-2A>T . ATAACCTGGGACA . 57.0 14.0 40.0 0.0 . 283 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179642164 179642164 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TTN NM_001267550 exon26 c.T4628A p.V1543E AAAATCACTGAAA . 52.0 34.0 48.0 0.0 . 18412 . . Atlas-SNP MFSD6 54842 hgsc.bcm.edu hg19 2 191362167 191362167 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MFSD6 NM_017694 exon7 c.A1894G p.K632E CCAGACAAGACAA . 63.0 14.0 40.0 0.0 . 58 . . Atlas-SNP ALS2CR11 151254 hgsc.bcm.edu hg19 2 202356442 202356442 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ALS2CR11 NM_001168221 exon15 c.A4622T p.Q1541L TTTTCCTGAACAG . 4.0 4.0 0.0 0.0 . 194 . . Atlas-SNP EPHA4 2043 hgsc.bcm.edu hg19 2 222301134 222301134 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . EPHA4 NM_004438 exon13 c.A2331T p.A777A GTAAGCTGCTTCC . 93.0 23.0 84.0 0.0 . 263 . . Atlas-SNP ALPP 250 hgsc.bcm.edu hg19 2 233243696 233243696 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ALPP NM_001632 exon2 c.C92A p.P31Q AGAACCCGGACTT . 109.0 16.0 77.0 0.0 . 53 . . Atlas-SNP SH3BP4 23677 hgsc.bcm.edu hg19 2 235951205 235951205 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SH3BP4 NM_014521 exon4 c.G1792T p.E598X GACCAGGAGGCCA . 130.0 94.0 116.0 0.0 . 109 . . Atlas-SNP ATP2B2 491 hgsc.bcm.edu hg19 3 10382000 10382000 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ATP2B2 NM_001001331 exon21 c.A3163T p.S1055C AGCAGCTGAATGG . 73.0 16.0 69.0 0.0 . 304 . . Atlas-SNP UBP1 7342 hgsc.bcm.edu hg19 3 33441756 33441756 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . UBP1 NM_014517 exon11 c.A1105G p.T369A GGATCGTAGCTGA . 54.0 6.0 60.0 0.0 . 42 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266098 41266098 + Missense_Mutation SNP A A T rs121913396 bycluster TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 CTNNB1,gallbladder,other,+1,128 CTNNB1 NM_001098209 exon3 c.A95T p.D32V ACCTGGACTCTGG . 167.0 34.0 160.0 0.0 . 4904 . . Atlas-SNP CDCP1 64866 hgsc.bcm.edu hg19 3 45187699 45187699 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CDCP1 NM_178181 exon1 c.A81T p.A27A CTCACCTGCCCCG . 83.0 14.0 89.0 0.0 . 61 . . Atlas-SNP PLXNB1 5364 hgsc.bcm.edu hg19 3 48455150 48455150 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PLXNB1 NM_001130082 exon23 c.A4464T p.A1488A CTGGGCTGCCACA . 74.0 14.0 75.0 0.0 . 150 . . Atlas-SNP CELSR3 1951 hgsc.bcm.edu hg19 3 48689876 48689876 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CELSR3 NM_001407 exon11 c.C5745A p.C1915X CTGGATGCAGCCA . 85.0 11.0 109.0 0.0 . 237 . . Atlas-SNP QRICH1 54870 hgsc.bcm.edu hg19 3 49095208 49095208 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . QRICH1 NM_198880 exon3 c.A425T p.Q142L GGTGCCTGGCCTT . 75.0 18.0 76.0 0.0 . 48 . . Atlas-SNP LAMB2 3913 hgsc.bcm.edu hg19 3 49166551 49166551 + Missense_Mutation SNP G G C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LAMB2 NM_002292 exon13 c.C1633G p.Q545E TGTGCTGGCGGCA . 53.0 26.0 45.0 0.0 . 156 . . Atlas-SNP BSN 8927 hgsc.bcm.edu hg19 3 49698355 49698355 + Missense_Mutation SNP C C G rs141830771 alternate_allele TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . BSN NM_003458 exon6 c.C9077G p.T3026S GCTGCACCACTCC . 49.0 13.0 46.0 0.0 . 272 . C|1.000;T|0.000 Atlas-SNP CDHR4 389118 hgsc.bcm.edu hg19 3 49832413 49832413 + Silent SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CDHR4 NM_001007540 exon9 c.T1152A p.P384P GCTGGCAGGGTTG . 139.0 35.0 121.0 0.0 . 37 . . Atlas-SNP LRTM1 57408 hgsc.bcm.edu hg19 3 54952542 54952542 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LRTM1 NM_020678 exon3 c.A982G p.T328A CATTGGTTTGAGC . 141.0 38.0 145.0 0.0 . 52 . . Atlas-SNP DNAH12 201625 hgsc.bcm.edu hg19 3 57394214 57394214 + Silent SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DNAH12 NM_178504 exon40 c.G6012T p.L2004L AGCAATCAGCTCT . 117.0 67.0 112.0 0.0 . 182 . . Atlas-SNP MITF 4286 hgsc.bcm.edu hg19 3 70008478 70008478 + Silent SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MITF NM_198159 exon9 c.A1068G p.R356R TATCCGAAAGTTG . 216.0 32.0 216.0 0.0 . 156 . . Atlas-SNP ROBO2 6092 hgsc.bcm.edu hg19 3 77666666 77666666 + Missense_Mutation SNP A A G rs372099694 TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ROBO2 NM_002942 exon22 c.A3296G p.Y1099C TCAGCTATGACAG . 63.0 44.0 64.0 0.0 . 527 . . Atlas-SNP IMPG2 50939 hgsc.bcm.edu hg19 3 100948247 100948247 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . IMPG2 NM_016247 exon17 c.G3610T p.E1204X TGCTCTCATACAT . 74.0 9.0 91.0 0.0 . 164 . . Atlas-SNP IMPG2 50939 hgsc.bcm.edu hg19 3 100976471 100976471 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . IMPG2 NM_016247 exon10 c.G1055T p.S352I AAGTTACTGATTG . 92.0 60.0 92.0 0.0 . 164 . . Atlas-SNP BTLA 151888 hgsc.bcm.edu hg19 3 112185077 112185077 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . BTLA NM_181780 exon5 c.G748T p.E250X TGTTTTCTTCCAG . 74.0 21.0 63.0 0.0 . 22 . . Atlas-SNP C3orf17 25871 hgsc.bcm.edu hg19 3 112736436 112736436 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . C3orf17 NM_015412 exon2 c.A120T p.A40A TACAGCTGCAATG . 99.0 42.0 93.0 0.0 . 37 . . Atlas-SNP BOC 91653 hgsc.bcm.edu hg19 3 113004363 113004363 + Silent SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . BOC NM_033254 exon19 c.C3108T p.A1036A GAGAGCCCCCGAC . 112.0 69.0 95.0 0.0 . 139 . . Atlas-SNP SPICE1 152185 hgsc.bcm.edu hg19 3 113187199 113187199 + Silent SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SPICE1 NM_144718 exon10 c.A942G p.S314S ACCTGATGATATG . 102.0 24.0 86.0 0.0 . 130 . . Atlas-SNP CLSTN2 64084 hgsc.bcm.edu hg19 3 140281142 140281142 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CLSTN2 NM_022131 exon13 c.C2204A p.S735Y GCTACTCCATCTA . 35.0 20.0 33.0 0.0 . 190 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195507996 195507996 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MUC4 NM_018406 exon2 c.C10455A p.H3485Q GGTGGTGTGACCT . 133.0 15.0 160.0 0.0 . 1505 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195509863 195509863 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MUC4 NM_018406 exon2 c.C8588A p.T2863N AGAGAGGTGGCGT . 168.0 12.0 197.0 0.0 . 1505 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195515685 195515685 + Silent SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MUC4 NM_018406 exon2 c.C2766A p.I922I CAGGCTGATAGTG . 108.0 27.0 135.0 0.0 . 1505 . . Atlas-SNP WFS1 7466 hgsc.bcm.edu hg19 4 6288867 6288867 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 WFS1,caecum,carcinoma,0,3 WFS1 NM_001145853 exon3 c.A280T p.R94W CTGGAGAGGGCCA . 32.0 16.0 108.0 0.0 . 71 . . Atlas-SNP BOD1L1 259282 hgsc.bcm.edu hg19 4 13616094 13616094 + Silent SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . . NM_148894 exon4 c.A900G p.L300L CAGAATTAAATTA . 33.0 21.0 75.0 0.0 . . . . Atlas-SNP RFC1 5981 hgsc.bcm.edu hg19 4 39313096 39313096 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RFC1 NM_002913 exon12 c.A1457G p.K486R TTGGATTTCTTGC . 38.0 7.0 50.0 0.0 . 114 . . Atlas-SNP GABRA4 2557 hgsc.bcm.edu hg19 4 46967019 46967019 + Nonsense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GABRA4 NM_000809 exon8 c.C1102T p.Q368X CTCTCTGCACTGG . 72.0 16.0 138.0 0.0 . 129 . . Atlas-SNP SPATA18 132671 hgsc.bcm.edu hg19 4 52943036 52943036 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SPATA18 NM_145263 exon7 c.A850T p.R284W AAGGTCAGGAGAC . 129.0 67.0 264.0 0.0 . 222 . . Atlas-SNP SULT1B1 27284 hgsc.bcm.edu hg19 4 70620914 70620914 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SULT1B1 NM_014465 exon2 c.C22T p.L8L TTCGCAGAATATC . 74.0 38.0 125.0 0.0 . 46 . . Atlas-SNP SOWAHB 345079 hgsc.bcm.edu hg19 4 77818168 77818168 + Missense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . . NM_001029870 exon1 c.C835T p.P279S GAGCGGGGCCGGG . 14.0 9.0 19.0 0.0 . . . . Atlas-SNP SEC31A 22872 hgsc.bcm.edu hg19 4 83793196 83793196 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SEC31A NM_001077206 exon7 c.A683C p.Q228P ACCATCTGAGTAG . 108.0 41.0 212.0 0.0 . 227 . . Atlas-SNP THAP9 79725 hgsc.bcm.edu hg19 4 83838969 83838969 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . THAP9 NM_024672 exon5 c.T1604A p.L535Q GGCCTCTGTTGCC . 33.0 16.0 70.0 0.0 . 65 . . Atlas-SNP WDFY3 23001 hgsc.bcm.edu hg19 4 85623579 85623579 + Silent SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . WDFY3 NM_014991 exon56 c.A8523C p.A2841A TACATCTGCCATA . 84.0 43.0 200.0 0.0 . 314 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123185451 123185451 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . KIAA1109 NM_015312 exon43 c.A7186C p.N2396H GATTTCAACACTG . 60.0 16.0 130.0 0.0 . 424 . . Atlas-SNP FGA 2243 hgsc.bcm.edu hg19 4 155507589 155507589 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FGA NM_000508 exon5 c.C992A p.T331N CTTCCAGTACTTC . 75.0 16.0 136.0 0.0 . 179 . . Atlas-SNP C4orf47 441054 hgsc.bcm.edu hg19 4 186361844 186361844 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . C4orf47 NM_001114357 exon5 c.A685G p.T229A TCAAATACTTTTA . 111.0 63.0 168.0 0.0 . 13 . . Atlas-SNP PRKAA1 5562 hgsc.bcm.edu hg19 5 40763061 40763061 + Missense_Mutation SNP T T C rs373496949 TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PRKAA1 NM_206907 exon10 c.A1544G p.Y515C GATCGATAGTTGC . 101.0 27.0 117.0 0.0 . 27 . . Atlas-SNP SREK1IP1 285672 hgsc.bcm.edu hg19 5 64023956 64023956 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SREK1IP1 NM_173829 exon4 c.A256T p.K86X TCAATTTGATTTT . 203.0 51.0 236.0 0.0 . 28 . . Atlas-SNP MARVELD2 153562 hgsc.bcm.edu hg19 5 68715680 68715680 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MARVELD2 NM_001244734 exon2 c.G468A p.R156R TCCCCGGGATCCC . 105.0 39.0 106.0 0.0 . 49 . . Atlas-SNP ELL2 22936 hgsc.bcm.edu hg19 5 95236690 95236690 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ELL2 NM_012081 exon6 c.A836G p.D279G CGTCTGTCTATTT . 163.0 73.0 217.0 0.0 . 63 . . Atlas-SNP SLCO4C1 353189 hgsc.bcm.edu hg19 5 101631729 101631729 + Missense_Mutation SNP G G C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SLCO4C1 NM_180991 exon1 c.C238G p.L80V CGGACAGCGACAG . 99.0 29.0 147.0 0.0 . 113 . . Atlas-SNP MAN2A1 4124 hgsc.bcm.edu hg19 5 109049407 109049407 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MAN2A1 NM_002372 exon2 c.T322G p.S108A CAATTATCCCTCT . 85.0 23.0 97.0 0.0 . 136 . . Atlas-SNP YTHDC2 64848 hgsc.bcm.edu hg19 5 112849665 112849665 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . YTHDC2 NM_022828 exon1 c.T73C p.C25R TCGCCTTGTGGCC . 70.0 21.0 86.0 0.0 . 118 . . Atlas-SNP DMXL1 1657 hgsc.bcm.edu hg19 5 118513717 118513717 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DMXL1 NM_005509 exon28 c.A6913T p.N2305Y CTTTTGAATTCTT . 89.0 15.0 102.0 0.0 . 268 . . Atlas-SNP SLC12A2 6558 hgsc.bcm.edu hg19 5 127484507 127484507 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SLC12A2 NM_001046 exon12 c.A1943G p.N648S GGAAAAATAATGA . 74.0 9.0 92.0 0.0 . 119 . . Atlas-SNP P4HA2 8974 hgsc.bcm.edu hg19 5 131552947 131552947 + Missense_Mutation SNP G G A rs370556720 TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . P4HA2 NM_001017974 exon4 c.C274T p.R92W TTAGCCGCTTCAC . 49.0 18.0 73.0 0.0 . 72 . . Atlas-SNP FAM13B 51306 hgsc.bcm.edu hg19 5 137354837 137354837 + Splice_Site SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FAM13B . . . . CTTTTCTGCCAAA . 77.0 33.0 95.0 0.0 . 46 . . Atlas-SNP PCDHB1 29930 hgsc.bcm.edu hg19 5 140432008 140432008 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PCDHB1 NM_013340 exon1 c.A953G p.D318G ACATTGACATTCA . 89.0 22.0 129.0 0.0 . 148 . . Atlas-SNP PCDHB8 56128 hgsc.bcm.edu hg19 5 140558117 140558117 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PCDHB8 NM_019120 exon1 c.A502G p.I168V AACAATATTGAGA . 352.0 71.0 512.0 0.0 . 199 . . Atlas-SNP JAKMIP2 9832 hgsc.bcm.edu hg19 5 147030071 147030071 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . JAKMIP2 NM_001270941 exon4 c.C667T p.L223L TTTCCAGGGAAAA . 138.0 51.0 163.0 0.0 . 154 . . Atlas-SNP SLC36A3 285641 hgsc.bcm.edu hg19 5 150678223 150678223 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SLC36A3 NM_181774 exon2 c.C150A p.H50Q CAACAAGTGGATC . 73.0 15.0 94.0 0.0 . 54 . . Atlas-SNP SPARC 6678 hgsc.bcm.edu hg19 5 151045983 151045983 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SPARC NM_003118 exon8 c.A673T p.N225Y ACATGTTATAGTT . 88.0 46.0 97.0 0.0 . 38 . . Atlas-SNP FAM114A2 10827 hgsc.bcm.edu hg19 5 153413430 153413430 + Silent SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FAM114A2 NM_018691 exon4 c.A324G p.S108S GACATTTGAAATG . 151.0 41.0 166.0 0.0 . 51 . . Atlas-SNP JARID2 3720 hgsc.bcm.edu hg19 6 15501254 15501254 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . JARID2 NM_004973 exon8 c.A2062G p.R688G ATCCCCAGAACTG . 80.0 9.0 99.0 0.0 . 135 . . Atlas-SNP HIST1H3I 8354 hgsc.bcm.edu hg19 6 27839739 27839739 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . HIST1H3I NM_003533 exon1 c.A355C p.T119P TAATAGTGACGCG . 101.0 39.0 111.0 0.0 . 28 . . Atlas-SNP OR2B2 81697 hgsc.bcm.edu hg19 6 27879561 27879561 + Silent SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OR2B2 NM_033057 exon1 c.T537C p.C179C GACTTCACAGAAG . 76.0 28.0 75.0 0.0 . 54 . . Atlas-SNP TRIM27 5987 hgsc.bcm.edu hg19 6 28876789 28876789 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TRIM27 NM_006510 exon5 c.A847T p.K283X GACATTTTTGGGC . 201.0 45.0 135.0 0.0 . 26 . . Atlas-SNP ZNF311 282890 hgsc.bcm.edu hg19 6 28963167 28963167 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ZNF311 NM_001010877 exon7 c.G1612T p.G538W ACTTCCCACTGAA . 87.0 8.0 121.0 0.0 . 59 . . Atlas-SNP ATF6B 1388 hgsc.bcm.edu hg19 6 32085719 32085719 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ATF6B NM_004381 exon12 c.A1341T p.P447P CTGAACTGGCTCT . 107.0 32.0 90.0 0.0 . 40 . . Atlas-SNP NOTCH4 4855 hgsc.bcm.edu hg19 6 32163815 32163815 + Missense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NOTCH4 NM_004557 exon30 c.C5411T p.A1804V ACGTCCGCCGGCG . 21.0 13.0 9.0 0.0 . 201 . . Atlas-SNP RCAN2 10231 hgsc.bcm.edu hg19 6 46424645 46424645 + Silent SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RCAN2 NM_001251973 exon2 c.A69G p.G23G AAGTCCTCCATCT . 86.0 17.0 68.0 0.0 . 39 . . Atlas-SNP GPR116 221395 hgsc.bcm.edu hg19 6 46828555 46828555 + Missense_Mutation SNP G G A rs375753155 TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GPR116 NM_015234 exon16 c.C2276T p.A759V TGTTCCGCTTTGT . 78.0 37.0 91.0 0.0 . 133 . . Atlas-SNP DEFB113 245927 hgsc.bcm.edu hg19 6 49937328 49937328 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DEFB113 NM_001037729 exon1 c.T11G p.L4R ATACAAAGTATCT . 89.0 8.0 52.0 0.0 . 18 . . Atlas-SNP BAI3 577 hgsc.bcm.edu hg19 6 70092727 70092727 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 BAI3,NS,carcinoma,0,1 BAI3 NM_001704 exon31 c.T4280C p.V1427A AGAAGGTCATGCA . 74.0 26.0 83.0 0.0 . 451 . . Atlas-SNP C6orf57 135154 hgsc.bcm.edu hg19 6 71289154 71289154 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . C6orf57 NM_145267 exon2 c.T102G p.S34R AACAAGTTCTTCT . 102.0 30.0 94.0 0.0 . 13 . . Atlas-SNP CD109 135228 hgsc.bcm.edu hg19 6 74407156 74407156 + Silent SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CD109 NM_133493 exon2 c.C108T p.I36I GATCATCAGGCCC . 71.0 23.0 71.0 0.0 . 170 . . Atlas-SNP HTR1B 3351 hgsc.bcm.edu hg19 6 78172967 78172967 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . HTR1B NM_000863 exon1 c.C154A p.L52M TAACCAGCAGTAC . 149.0 95.0 162.0 0.0 . 55 . . Atlas-SNP DOPEY1 23033 hgsc.bcm.edu hg19 6 83862023 83862023 + Silent SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DOPEY1 NM_015018 exon30 c.A6066G p.A2022A ACCTGCAATGGAA . 109.0 36.0 124.0 0.0 . 190 . . Atlas-SNP DOPEY1 23033 hgsc.bcm.edu hg19 6 83862028 83862028 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DOPEY1 NM_015018 exon30 c.A6071C p.E2024A CAATGGAAACCGC . 108.0 37.0 124.0 0.0 . 190 . . Atlas-SNP FUT9 10690 hgsc.bcm.edu hg19 6 96651917 96651917 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 FUT9,colon,carcinoma,0,1 FUT9 NM_006581 exon3 c.A886T p.S296C TCTCCCAGTGAGC . 56.0 8.0 51.0 0.0 . 79 . . Atlas-SNP MICAL1 64780 hgsc.bcm.edu hg19 6 109766714 109766714 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MICAL1 NM_022765 exon21 c.A2692T p.K898X AGGTCTTGGCAAA . 67.0 26.0 47.0 0.0 . 79 . . Atlas-SNP FIG4 9896 hgsc.bcm.edu hg19 6 110081565 110081565 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FIG4 NM_014845 exon11 c.A1250T p.D417V CCTGGGACATGGC . 81.0 20.0 94.0 0.0 . 77 . . Atlas-SNP REV3L 5980 hgsc.bcm.edu hg19 6 111696479 111696479 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . REV3L NM_002912 exon13 c.G3079T p.V1027F CGGGAACTTTTGG . 52.0 12.0 45.0 0.0 . 386 . . Atlas-SNP L3MBTL3 84456 hgsc.bcm.edu hg19 6 130415451 130415451 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . L3MBTL3 NM_032438 exon18 c.T1675C p.S559P GGATGCTCAACCC . 79.0 10.0 70.0 0.0 . 99 . . Atlas-SNP HIVEP2 3097 hgsc.bcm.edu hg19 6 143090697 143090697 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . HIVEP2 NM_006734 exon5 c.T5179C p.F1727L GAGTAAACTGCTT . 70.0 52.0 55.0 0.0 . 225 . . Atlas-SNP ADGB 79747 hgsc.bcm.edu hg19 6 147067116 147067116 + Missense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ADGB NM_024694 exon26 c.G3236A p.R1079Q CCTCACGATGGAA . 96.0 16.0 72.0 0.0 . 93 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152652650 152652650 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SYNE1 NM_182961 exon78 c.C13170T p.I4390I ACTGCAGATGGCC . 104.0 71.0 133.0 0.0 . 3227 . . Atlas-SNP NOX3 50508 hgsc.bcm.edu hg19 6 155776020 155776020 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NOX3 NM_015718 exon3 c.C180T p.C60C ATTCAGGCACAGT . 98.0 32.0 74.0 0.0 . 93 . . Atlas-SNP FNDC1 84624 hgsc.bcm.edu hg19 6 159650876 159650876 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FNDC1 NM_032532 exon10 c.A1210C p.K404Q GCTCTCAAACCAT . 82.0 22.0 60.0 0.0 . 250 . . Atlas-SNP MLLT4 4301 hgsc.bcm.edu hg19 6 168352222 168352222 + Silent SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MLLT4 NM_001040000 exon29 c.A4167T p.P1389P TCTCCCACCACCC . 71.0 7.0 50.0 0.0 . 351 . . Atlas-SNP LFNG 3955 hgsc.bcm.edu hg19 7 2565185 2565185 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LFNG NM_001040167 exon4 c.T719A p.V240D AGCGGGTCAGCGA . 39.0 13.0 46.0 0.0 . 57 . . Atlas-SNP FOXK1 221937 hgsc.bcm.edu hg19 7 4801902 4801902 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FOXK1 NM_001037165 exon9 c.A2009T p.K670M GGCCCAAGGAGCC . 129.0 38.0 124.0 0.0 . 64 . . Atlas-SNP FSCN1 6624 hgsc.bcm.edu hg19 7 5643005 5643005 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FSCN1 NM_003088 exon2 c.T950A p.L317Q GGACGCTGACGGC . 62.0 10.0 70.0 0.0 . 29 . . Atlas-SNP STK31 56164 hgsc.bcm.edu hg19 7 23766879 23766879 + Missense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . STK31 NM_031414 exon5 c.C269T p.S90F TATTTTCTGAAGA . 78.0 36.0 109.0 0.0 . 175 . . Atlas-SNP HOXA11 3207 hgsc.bcm.edu hg19 7 27224509 27224509 + Silent SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . HOXA11 NM_005523 exon1 c.G255T p.A85A CTCCTCCGCGGAG . 73.0 37.0 96.0 0.0 . 29 . . Atlas-SNP STK17A 9263 hgsc.bcm.edu hg19 7 43647961 43647961 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . STK17A NM_004760 exon3 c.T526G p.F176V GTTCACTTTTTAC . 134.0 59.0 164.0 0.0 . 31 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47870917 47870917 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PKD1L1 NM_138295 exon42 c.A6371G p.Q2124R GACCACTGGGGCA . 96.0 36.0 121.0 0.0 . 328 . . Atlas-SNP ZNF273 10793 hgsc.bcm.edu hg19 7 64388967 64388967 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ZNF273 NM_021148 exon4 c.A1261G p.K421E AAACATAAGAGAA . 148.0 22.0 143.0 0.0 . 45 . . Atlas-SNP CYP3A5 1577 hgsc.bcm.edu hg19 7 99272195 99272195 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CYP3A5 NM_001190484 exon3 c.T179G p.F60C GTGTCAAATTTCC . 42.0 22.0 69.0 0.0 . 46 . . Atlas-SNP AZGP1 563 hgsc.bcm.edu hg19 7 99569527 99569527 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . AZGP1 NM_001185 exon2 c.G179T p.R60I TTGTATCTAAAGA . 81.0 18.0 79.0 0.0 . 41 . . Atlas-SNP TMEM168 64418 hgsc.bcm.edu hg19 7 112412840 112412840 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TMEM168 NM_022484 exon4 c.A1542T p.L514L ACCTGCTAGAGCC . 139.0 37.0 194.0 0.0 . 84 . . Atlas-SNP CFTR 1080 hgsc.bcm.edu hg19 7 117175426 117175426 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CFTR NM_000492 exon6 c.T704C p.L235P TTGCCCTTTTTCA . 96.0 4.0 121.0 0.0 . 171 . . Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu hg19 7 121653534 121653534 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PTPRZ1 NM_002851 exon12 c.T4434A p.S1478S ACTATCTGAGAAT . 69.0 27.0 92.0 0.0 . 605 . . Atlas-SNP GCC1 79571 hgsc.bcm.edu hg19 7 127222729 127222729 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GCC1 NM_024523 exon2 c.T1667A p.L556Q CGGGCCAGCTCCT . 34.0 5.0 48.0 0.0 . 83 . . Atlas-SNP CHRM2 1129 hgsc.bcm.edu hg19 7 136700208 136700208 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CHRM2 NM_001006632 exon3 c.T596C p.V199A TGCCAGTGATCAT . 58.0 30.0 69.0 0.0 . 167 . . Atlas-SNP AKR1D1 6718 hgsc.bcm.edu hg19 7 137776523 137776523 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . AKR1D1 NM_001190907 exon3 c.A271G p.T91A TGGGCTACAAATC . 75.0 14.0 67.0 0.0 . 52 . . Atlas-SNP CLCN1 1180 hgsc.bcm.edu hg19 7 143021573 143021573 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CLCN1 NM_000083 exon7 c.A841G p.T281A TTTGGGACACCAC . 98.0 29.0 98.0 0.0 . 141 . . Atlas-SNP GALNT11 63917 hgsc.bcm.edu hg19 7 151810421 151810421 + Missense_Mutation SNP G G C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GALNT11 NM_022087 exon8 c.G1171C p.G391R CCCGAAGGCCAGG . 104.0 14.0 125.0 0.0 . 59 . . Atlas-SNP ADAMDEC1 27299 hgsc.bcm.edu hg19 8 24254913 24254913 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ADAMDEC1 NM_014479 exon6 c.A571G p.S191G GTGAAGAGCACTG . 88.0 34.0 115.0 0.0 . 69 . . Atlas-SNP PTK2B 2185 hgsc.bcm.edu hg19 8 27293843 27293843 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PTK2B NM_173174 exon20 c.A1319G p.Y440C AGGTCTATGAAGG . 90.0 12.0 129.0 0.0 . 304 . . Atlas-SNP NRG1 3084 hgsc.bcm.edu hg19 8 31498128 31498128 + Missense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NRG1 NM_013962 exon1 c.G628A p.E210K TTCATGGAGCCCG . 68.0 34.0 78.0 0.0 . 260 . . Atlas-SNP ADAM32 203102 hgsc.bcm.edu hg19 8 39018462 39018462 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ADAM32 NM_145004 exon7 c.A572G p.H191R AAATGCATATTGT . 79.0 31.0 64.0 0.0 . 70 . . Atlas-SNP AGPAT6 137964 hgsc.bcm.edu hg19 8 41469773 41469773 + Missense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . AGPAT6 NM_178819 exon7 c.G776A p.S259N TGGCCAGCGATGG . 91.0 33.0 107.0 0.0 . 32 . . Atlas-SNP C8orf22 492307 hgsc.bcm.edu hg19 8 49986888 49986888 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . C8orf22 NM_001256598 exon4 c.A229G p.T77A TCTGCTACTGGGT . 63.0 17.0 64.0 0.0 . 20 . . Atlas-SNP CSPP1 79848 hgsc.bcm.edu hg19 8 68107738 68107738 + Silent SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CSPP1 NM_024790 exon29 c.C3576T p.F1192F ACGTTTCATGGCA . 174.0 89.0 163.0 0.0 . 129 . . Atlas-SNP NCOA2 10499 hgsc.bcm.edu hg19 8 71036125 71036125 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NCOA2 NM_006540 exon21 c.C4287T p.P1429P CTGCTCGGGACCC . 126.0 34.0 103.0 0.0 . 147 . . Atlas-SNP EYA1 2138 hgsc.bcm.edu hg19 8 72229893 72229893 + Silent SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . EYA1 NM_000503 exon7 c.T450A p.G150G CAATCCACCTTCA . 58.0 23.0 55.0 0.0 . 108 . . Atlas-SNP IMPA1 3612 hgsc.bcm.edu hg19 8 82572837 82572837 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . IMPA1 NM_001144878 exon9 c.A809G p.Y270C TCATAATATGCAT . 453.0 53.0 290.0 0.0 . 46 . . Atlas-SNP CA1 759 hgsc.bcm.edu hg19 8 86250479 86250479 + Splice_Site SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CA1 NM_001738 exon5 c.235+2T>A . CAGCTCACCTGAT . 92.0 13.0 60.0 0.0 . 41 . . Atlas-SNP REXO1L1 254958 hgsc.bcm.edu hg19 8 86573858 86573858 + Silent SNP G G A rs145542023 TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 REXO1L1_ENST00000379010,NS,carcinoma,0,2 REXO1L1 NM_172239 exon1 c.C1869T p.A623A GTAGTCGGCCGCG . 28.0 3.0 1.0 0.0 . 28 . . Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 131797638 131797638 + Silent SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ADCY8 NM_001115 exon16 c.T3144A p.P1048P TTTTTCAGGTGAC . 75.0 6.0 49.0 0.0 . 291 . . Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 131848557 131848557 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 ADCY8,colon,carcinoma,0,1 ADCY8 NM_001115 exon12 c.T2641C p.F881L GCAGAAAGAGGCC . 130.0 46.0 98.0 0.0 . 291 . . Atlas-SNP TG 7038 hgsc.bcm.edu hg19 8 133935748 133935748 + Missense_Mutation SNP G G C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TG NM_003235 exon22 c.G4694C p.C1565S CACAGTGTTTGAG . 89.0 24.0 67.0 0.0 . 416 . . Atlas-SNP PTK2 5747 hgsc.bcm.edu hg19 8 141889628 141889628 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PTK2 NM_005607 exon4 c.A370G p.M124V CGCCCATATCCAC . 194.0 92.0 128.0 0.0 . 311 . . Atlas-SNP ZFP41 286128 hgsc.bcm.edu hg19 8 144332183 144332183 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ZFP41 NM_173832 exon2 c.A170T p.E57V AAGACGAAGAGCA . 97.0 7.0 79.0 0.0 . 25 . . Atlas-SNP PLEC 5339 hgsc.bcm.edu hg19 8 145001890 145001890 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PLEC NM_201380 exon27 c.C3855T p.A1285A CCGCAGGGCGTCG . 59.0 11.0 48.0 0.0 . 1144 . . Atlas-SNP ARHGAP39 80728 hgsc.bcm.edu hg19 8 145758592 145758592 + Missense_Mutation SNP C C T rs144988605 alternate_allele TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ARHGAP39 NM_025251 exon10 c.G2806A p.E936K GGCGCTCGGGGTA . 62.0 24.0 41.0 0.0 . 80 . C|1.000;G|0.000 Atlas-SNP ARHGAP39 80728 hgsc.bcm.edu hg19 8 145806392 145806392 + Missense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ARHGAP39 NM_025251 exon4 c.G350A p.R117H GAGGCGCGCGGGG . 55.0 23.0 42.0 0.0 . 80 . . Atlas-SNP CHMP5 51510 hgsc.bcm.edu hg19 9 33271184 33271184 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CHMP5 NM_016410 exon5 c.A350G p.K117R AAATGAAGAAGGC . 49.0 25.0 57.0 0.0 . 15 . . Atlas-SNP FBXO10 26267 hgsc.bcm.edu hg19 9 37541574 37541574 + Silent SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FBXO10 NM_012166 exon2 c.A192G p.P64P CACATCTGGCTGG . 127.0 36.0 132.0 0.0 . 75 . . Atlas-SNP TMC1 117531 hgsc.bcm.edu hg19 9 75431065 75431065 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TMC1 NM_138691 exon19 c.T1702G p.Y568D CCTTCATACACCG . 95.0 13.0 97.0 0.0 . 87 . . Atlas-SNP OGN 4969 hgsc.bcm.edu hg19 9 95148565 95148565 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OGN NM_033014 exon6 c.T644A p.L215H AAGGTGAGGTTAT . 64.0 29.0 50.0 0.0 . 26 . . Atlas-SNP NIPSNAP3B 55335 hgsc.bcm.edu hg19 9 107533137 107533137 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NIPSNAP3B NM_018376 exon4 c.T438A p.Y146X AGTCTATGAACTA . 88.0 31.0 74.0 0.0 . 22 . . Atlas-SNP PPP6C 5537 hgsc.bcm.edu hg19 9 127920663 127920663 + Splice_Site SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PPP6C NM_002721 exon5 c.238-2A>T . TCACCCTGTGAAG . 102.0 8.0 58.0 0.0 . 108 . . Atlas-SNP LMX1B 4010 hgsc.bcm.edu hg19 9 129458665 129458665 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LMX1B NM_001174146 exon8 c.C1156A p.Q386K TCCCTGCAGGCCC . 108.0 35.0 114.0 0.0 . 86 . . Atlas-SNP KCNT1 57582 hgsc.bcm.edu hg19 9 138642869 138642869 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . KCNT1 NM_020822 exon4 c.C416A p.P139Q ATGACCCGGCCCT . 27.0 10.0 38.0 0.0 . 139 . . Atlas-SNP C9orf172 389813 hgsc.bcm.edu hg19 9 139740383 139740383 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . C9orf172 NM_001080482 exon1 c.T1517C p.L506P CCGCACTGTCCCT . 51.0 26.0 41.0 0.0 . 23 . . Atlas-SNP DIP2C 22982 hgsc.bcm.edu hg19 10 329356 329356 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DIP2C NM_014974 exon35 c.G4150T p.G1384C AATAACCGCTGGC . 82.0 4.0 128.0 0.0 . 195 . . Atlas-SNP RAB18 22931 hgsc.bcm.edu hg19 10 27822715 27822715 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RAB18 NM_001256410 exon6 c.A398G p.N133S GGTTAAATGAATT . 67.0 18.0 61.0 0.0 . 18 . . Atlas-SNP ARHGAP22 58504 hgsc.bcm.edu hg19 10 49687731 49687731 + Missense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ARHGAP22 NM_001256025 exon4 c.G417A p.M139I GTCCTCCATGTCA . 73.0 21.0 71.0 0.0 . 94 . . Atlas-SNP CHAT 1103 hgsc.bcm.edu hg19 10 50873041 50873041 + Silent SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CHAT NM_020549 exon15 c.A2196G p.P732P CAAGCCATTGGCA . 64.0 45.0 79.0 0.0 . 162 . . Atlas-SNP DNA2 1763 hgsc.bcm.edu hg19 10 70190319 70190319 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DNA2 NM_001080449 exon14 c.A2082G p.I694M AAATCCTATTTTA . 85.0 23.0 111.0 0.0 . 76 . . Atlas-SNP ASCC1 51008 hgsc.bcm.edu hg19 10 73892879 73892879 + Silent SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ASCC1 NM_001198799 exon9 c.A891G p.K297K CCACTCTTTCACT . 85.0 23.0 97.0 0.0 . 18 . . Atlas-SNP GOLGA7B 401647 hgsc.bcm.edu hg19 10 99623744 99623744 + Missense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GOLGA7B NM_001010917 exon3 c.G196A p.A66T GCAGAGGCTGAGA . 63.0 15.0 81.0 0.0 . 11 . . Atlas-SNP ABCC2 1244 hgsc.bcm.edu hg19 10 101556936 101556936 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ABCC2 NM_000392 exon7 c.G715T p.V239L ACATTAGTGAGCA . 63.0 32.0 79.0 0.0 . 160 . . Atlas-SNP SUFU 51684 hgsc.bcm.edu hg19 10 104389884 104389884 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SUFU NM_016169 exon12 c.A1427T p.D476V TGCCTGACGTGGT . 51.0 23.0 75.0 0.0 . 44 . . Atlas-SNP WDR96 80217 hgsc.bcm.edu hg19 10 105900629 105900629 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . WDR96 NM_025145 exon34 c.A4402T p.I1468L CAATTATGTTCTT . 69.0 7.0 82.0 0.0 . 183 . . Atlas-SNP SORCS3 22986 hgsc.bcm.edu hg19 10 106924072 106924072 + Missense_Mutation SNP C C G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SORCS3 NM_014978 exon12 c.C1744G p.P582A ATTGGCCCGGAGC . 46.0 6.0 44.0 0.0 . 282 . . Atlas-SNP EIF3A 8661 hgsc.bcm.edu hg19 10 120819149 120819149 + Missense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . EIF3A NM_003750 exon10 c.G1408A p.A470T CTATGGCCCGTTC . 256.0 63.0 281.0 0.0 . 142 . . Atlas-SNP FGFR2 2263 hgsc.bcm.edu hg19 10 123276887 123276887 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FGFR2 NM_000141 exon8 c.G1030T p.A344S TACCCGCCAAGCA . 86.0 22.0 102.0 0.0 . 758 . . Atlas-SNP FAM196A 642938 hgsc.bcm.edu hg19 10 128973670 128973670 + Silent SNP C C G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FAM196A NM_001039762 exon4 c.G990C p.G330G CCCCAGCCCCGGC . 37.0 9.0 30.0 0.0 . 55 . . Atlas-SNP VENTX 27287 hgsc.bcm.edu hg19 10 135053333 135053333 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . VENTX NM_014468 exon2 c.A395T p.E132V TCTCAGAGGTCCA . 44.0 12.0 42.0 0.0 . 24 . . Atlas-SNP LRRC56 115399 hgsc.bcm.edu hg19 11 552109 552109 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LRRC56 NM_198075 exon12 c.A1058T p.Q353L CCGAGCAGCTGCC . 76.0 37.0 107.0 0.0 . 23 . . Atlas-SNP OR52A1 23538 hgsc.bcm.edu hg19 11 5172674 5172674 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OR52A1 NM_012375 exon1 c.T926C p.M309T CAGAACATTTTTA . 58.0 19.0 92.0 0.0 . 58 . . Atlas-SNP TRIM6-TRIM34 445372 hgsc.bcm.edu hg19 11 5624771 5624771 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TRIM6-TRIM34 NM_001003819 exon2 c.A313G p.I105V GCCAACATAGTGA . 31.0 15.0 68.0 0.0 . 68 . . Atlas-SNP DCDC5 100506627 hgsc.bcm.edu hg19 11 30946867 30946867 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DCDC5 NM_020869 exon4 c.A307G p.R103G CATCTCTTTGCAG . 48.0 25.0 74.0 0.0 . 137 . . Atlas-SNP NR1H3 10062 hgsc.bcm.edu hg19 11 47289839 47289839 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NR1H3 NM_001251934 exon9 c.A1148C p.Q383P AGCTCCAGGTAGA . 62.0 27.0 100.0 0.0 . 52 . . Atlas-SNP OR5B17 219965 hgsc.bcm.edu hg19 11 58126348 58126348 + Silent SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OR5B17 NM_001005489 exon1 c.T195C p.S65S TGCAAGAGACAGG . 27.0 10.0 85.0 0.0 . 64 . . Atlas-SNP FLRT1 23769 hgsc.bcm.edu hg19 11 63883947 63883947 + Silent SNP C C A rs139162750 alternate_allele TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FLRT1 NM_013280 exon2 c.C208A p.R70R AACGACCGGGGAC . 26.0 18.0 53.0 0.0 . 46 . C|1.000;T|0.000 Atlas-SNP CCDC88B 283234 hgsc.bcm.edu hg19 11 64111953 64111953 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CCDC88B NM_032251 exon14 c.A1940G p.E647G GCCCTGAGCACAA . 58.0 22.0 89.0 0.0 . 89 . . Atlas-SNP INPPL1 3636 hgsc.bcm.edu hg19 11 71948760 71948760 + Silent SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . INPPL1 NM_001567 exon26 c.C3472T p.L1158L CGGGGACTGCCCT . 59.0 25.0 105.0 0.0 . 120 . . Atlas-SNP MMP27 64066 hgsc.bcm.edu hg19 11 102573828 102573828 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MMP27 NM_022122 exon3 c.T363A p.D121E TGCCATATCCGGA . 59.0 34.0 100.0 0.0 . 84 . . Atlas-SNP ZC3H12C 85463 hgsc.bcm.edu hg19 11 110033998 110033998 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ZC3H12C NM_033390 exon5 c.G1149T p.K383N TGACAGGTTCATG . 56.0 26.0 93.0 0.0 . 83 . . Atlas-SNP NCAM1 4684 hgsc.bcm.edu hg19 11 113102431 113102431 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NCAM1 NM_001242607 exon12 c.T1232C p.I411T AGAGCATCCAGTA . 68.0 4.0 97.0 0.0 . 372 . . Atlas-SNP MFAP5 8076 hgsc.bcm.edu hg19 12 8800721 8800721 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MFAP5 NM_003480 exon10 c.A488G p.E163G ACATTTTCACAGG . 85.0 70.0 166.0 0.0 . 34 . . Atlas-SNP C2CD5 9847 hgsc.bcm.edu hg19 12 22676443 22676443 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . . NM_014802 exon7 c.A717T p.I239I CGTTCCTATGGCT . 54.0 19.0 91.0 0.0 . . . . Atlas-SNP RPAP3 79657 hgsc.bcm.edu hg19 12 48064026 48064026 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RPAP3 NM_024604 exon13 c.A1390T p.N464Y CTAGATTAATAGG . 55.0 20.0 55.0 0.0 . 45 . . Atlas-SNP DDN 23109 hgsc.bcm.edu hg19 12 49391094 49391094 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DDN NM_015086 exon2 c.A1565T p.Q522L CCGGGCTGGTGTA . 180.0 89.0 195.0 0.0 . 54 . . Atlas-SNP RACGAP1 29127 hgsc.bcm.edu hg19 12 50388003 50388003 + Missense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RACGAP1 NM_013277 exon14 c.C1250T p.A417V CAGATAGCATGGA . 104.0 42.0 96.0 0.0 . 36 . . Atlas-SNP KRT71 112802 hgsc.bcm.edu hg19 12 52938508 52938508 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . KRT71 NM_033448 exon9 c.T1380G p.S460R GCCGCCACTGGTG . 22.0 7.0 36.0 0.0 . 70 . . Atlas-SNP KRT1 3848 hgsc.bcm.edu hg19 12 53073703 53073703 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . KRT1 NM_006121 exon1 c.G430T p.G144C CAGGACCATAACC . 113.0 26.0 191.0 0.0 . 110 . . Atlas-SNP CAND1 55832 hgsc.bcm.edu hg19 12 67691234 67691234 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CAND1 NM_018448 exon5 c.T539C p.L180P CCTGTCTACTTCC . 112.0 51.0 114.0 0.0 . 100 . . Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78362415 78362415 + Silent SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 NAV3,NS,carcinoma,0,2 NAV3 NM_014903 exon5 c.C604A p.R202R CAGCAGCGAGTTA . 213.0 87.0 194.0 0.0 . 506 . . Atlas-SNP NEDD1 121441 hgsc.bcm.edu hg19 12 97337446 97337446 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NEDD1 NM_001135175 exon11 c.C1424A p.S475Y TGGGATCTCCAGG . 55.0 19.0 61.0 0.0 . 47 . . Atlas-SNP GCN1L1 10985 hgsc.bcm.edu hg19 12 120575521 120575521 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GCN1L1 NM_006836 exon49 c.A6491G p.E2164G CCCACCTCAGGGC . 69.0 10.0 91.0 0.0 . 207 . . Atlas-SNP LATS2 26524 hgsc.bcm.edu hg19 13 21549409 21549409 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LATS2 NM_014572 exon8 c.A2867T p.D956V CGGTGGTCTGCGG . 71.0 25.0 88.0 0.0 . 176 . . Atlas-SNP MIPEP 4285 hgsc.bcm.edu hg19 13 24410481 24410481 + Silent SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MIPEP NM_005932 exon14 c.G1551A p.R517R AGGGCACCTGGTC . 50.0 16.0 53.0 0.0 . 53 . . Atlas-SNP ATP12A 479 hgsc.bcm.edu hg19 13 25284608 25284608 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ATP12A NM_001185085 exon20 c.A2792G p.Q931R GGTACCAGAGGGA . 80.0 39.0 164.0 0.0 . 172 . . Atlas-SNP WBP4 11193 hgsc.bcm.edu hg19 13 41656941 41656941 + Missense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 WBP4,NS,carcinoma,0,1 WBP4 NM_007187 exon10 c.C1022T p.T341I AAAAAACAGTCAC . 75.0 17.0 100.0 0.0 . 40 . . Atlas-SNP TNFSF11 8600 hgsc.bcm.edu hg19 13 43174893 43174893 + Silent SNP A A G rs375216189 TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TNFSF11 NM_003701 exon3 c.A393G p.L131L GGAATTACAACAT . 38.0 13.0 46.0 0.0 . 43 . . Atlas-SNP GAS6 2621 hgsc.bcm.edu hg19 13 114535616 114535616 + Missense_Mutation SNP T T A rs200744856 by1000genomes;alternate_allele TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GAS6 NM_000820 exon9 c.A944T p.Q315L GTGGGCTGCAGCC . 40.0 4.0 40.0 0.0 . 75 . T|1.000;C|0.000 Atlas-SNP RASA3 22821 hgsc.bcm.edu hg19 13 114766318 114766318 + Silent SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RASA3 NM_007368 exon19 c.C1833A p.T611T GTGGTAGGTAAAT . 85.0 37.0 124.0 0.0 . 83 . . Atlas-SNP RNASE10 338879 hgsc.bcm.edu hg19 14 20979115 20979115 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RNASE10 NM_001012975 exon1 c.A485T p.K162M AGCTCAAGGGGGG . 66.0 9.0 108.0 0.0 . 28 . . Atlas-SNP GZMB 3002 hgsc.bcm.edu hg19 14 25101298 25101298 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GZMB NM_004131 exon4 c.A366T p.R122S CACAGCTCTGGTC . 55.0 16.0 55.0 0.0 . 73 . . Atlas-SNP FAM179B 23116 hgsc.bcm.edu hg19 14 45433642 45433642 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FAM179B NM_015091 exon1 c.A2018T p.Q673L AAAACCAGACCTC . 32.0 25.0 46.0 0.0 . 115 . . Atlas-SNP PPP2R5E 5529 hgsc.bcm.edu hg19 14 63860613 63860613 + Silent SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PPP2R5E NM_006246 exon8 c.A774G p.A258A GTGTTCTGCCTTA . 76.0 13.0 82.0 0.0 . 43 . . Atlas-SNP FAM161B 145483 hgsc.bcm.edu hg19 14 74411141 74411141 + Missense_Mutation SNP C C G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FAM161B NM_152445 exon3 c.G1011C p.Q337H GTCTCTCTGTCGA . 56.0 13.0 70.0 0.0 . 67 . . Atlas-SNP BDKRB2 624 hgsc.bcm.edu hg19 14 96707630 96707630 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 BDKRB2,NS,carcinoma,0,1 BDKRB2 NM_000623 exon3 c.A965G p.Y322C TGGCCTACAGCAA . 61.0 7.0 111.0 0.0 . 56 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105408806 105408806 + Missense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . AHNAK2 NM_138420 exon7 c.G12982A p.V4328M CCTCCACCTTCAG . 82.0 54.0 93.0 0.0 . 719 . . Atlas-SNP OTUD7A 161725 hgsc.bcm.edu hg19 15 31776404 31776404 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OTUD7A NM_130901 exon11 c.T1874G p.L625R GCGCGCAGGATGT . 20.0 10.0 22.0 0.0 . 89 . . Atlas-SNP CEP152 22995 hgsc.bcm.edu hg19 15 49033896 49033896 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CEP152 NM_001194998 exon26 c.A3995T p.E1332V TTTTTCTCAGCCC . 45.0 10.0 55.0 0.0 . 145 . . Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 63970246 63970246 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . HERC1 NM_003922 exon37 c.G6868T p.D2290Y AGAGGTCAGCGAG . 70.0 28.0 83.0 0.0 . 624 . . Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 63986548 63986548 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . HERC1 NM_003922 exon29 c.A5443T p.S1815C TTGTACTGGCCAC . 65.0 13.0 119.0 0.0 . 624 . . Atlas-SNP ADAMTS7 11173 hgsc.bcm.edu hg19 15 79059245 79059245 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ADAMTS7 NM_014272 exon19 c.C3008A p.P1003H CCTTCAGGGCCCA . 55.0 21.0 83.0 0.0 . 142 . . Atlas-SNP ADAMTSL3 57188 hgsc.bcm.edu hg19 15 84568428 84568428 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ADAMTSL3 NM_207517 exon15 c.T1645A p.W549R TTGCCTTGGCTGA . 174.0 66.0 232.0 0.0 . 290 . . Atlas-SNP MEF2A 4205 hgsc.bcm.edu hg19 15 100214726 100214726 + Silent SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MEF2A NM_005587 exon6 c.A525G p.T175T GTTAACAGATTCA . 89.0 39.0 119.0 0.0 . 138 . . Atlas-SNP LRRK1 79705 hgsc.bcm.edu hg19 15 101562141 101562141 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LRRK1 NM_024652 exon14 c.C1831A p.P611T AATGTGCCTGCAG . 35.0 18.0 77.0 0.0 . 310 . . Atlas-SNP OR4F6 390648 hgsc.bcm.edu hg19 15 102346471 102346471 + Silent SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OR4F6 NM_001005326 exon1 c.A549G p.R183R TCCTCGATTTATC . 74.0 34.0 80.0 0.0 . 45 . . Atlas-SNP MEFV 4210 hgsc.bcm.edu hg19 16 3304779 3304779 + Missense_Mutation SNP G G C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MEFV NM_000243 exon2 c.C289G p.Q97E TTTCTTGTGTGGA . 36.0 10.0 31.0 0.0 . 170 . . Atlas-SNP SEC14L5 9717 hgsc.bcm.edu hg19 16 5050737 5050737 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SEC14L5 NM_014692 exon9 c.T1052A p.L351Q CGCTGCTGCGGCA . 57.0 23.0 66.0 0.0 . 79 . . Atlas-SNP IGSF6 10261 hgsc.bcm.edu hg19 16 21654919 21654919 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . IGSF6 NM_005849 exon4 c.T535A p.S179T ATTTTGACTGCCA . 73.0 14.0 57.0 0.0 . 19 . . Atlas-SNP CES5A 221223 hgsc.bcm.edu hg19 16 55897346 55897346 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CES5A NM_001190158 exon7 c.A811T p.K271X AGCCTTTGGCCAT . 122.0 15.0 104.0 0.0 . 206 . . Atlas-SNP AMFR 267 hgsc.bcm.edu hg19 16 56435757 56435757 + Splice_Site SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . AMFR NM_001144 exon9 c.975-2A>T . CAAACCTGTGGAA . 40.0 8.0 43.0 0.0 . 40 . . Atlas-SNP CMIP 80790 hgsc.bcm.edu hg19 16 81691394 81691394 + Silent SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CMIP NM_198390 exon5 c.C654A p.T218T CTTGACCACCCAG . 120.0 25.0 136.0 0.0 . 37 . . Atlas-SNP OR3A1 4994 hgsc.bcm.edu hg19 17 3195335 3195335 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OR3A1 NM_002550 exon1 c.A542G p.Y181C TCACAGTAGAAGT . 79.0 62.0 169.0 0.0 . 46 . . Atlas-SNP GLP2R 9340 hgsc.bcm.edu hg19 17 9739777 9739777 + Missense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GLP2R NM_004246 exon3 c.C367T p.P123S TACTTACCTTGGT . 40.0 26.0 118.0 0.0 . 90 . . Atlas-SNP FBXW10 10517 hgsc.bcm.edu hg19 17 18653121 18653121 + Missense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FBXW10 NM_001267585 exon3 c.G757A p.D253N GGGTACGATCCCT . 344.0 15.0 315.0 0.0 . 82 . . Atlas-SNP ULK2 9706 hgsc.bcm.edu hg19 17 19741841 19741841 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ULK2 NM_001142610 exon10 c.A760G p.R254G GGTTTCTCTGAAG . 172.0 84.0 180.0 0.0 . 142 . . Atlas-SNP NOS2 4843 hgsc.bcm.edu hg19 17 26089920 26089920 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NOS2 NM_000625 exon22 c.A2704T p.I902F TCAGAATGGGGAG . 58.0 24.0 60.0 0.0 . 113 . . Atlas-SNP VTN 7448 hgsc.bcm.edu hg19 17 26695961 26695961 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . VTN NM_000638 exon5 c.A758T p.N253I TCCACGTTGTCCG . 130.0 63.0 131.0 0.0 . 45 . . Atlas-SNP SUPT6H 6830 hgsc.bcm.edu hg19 17 27017150 27017150 + Silent SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SUPT6H NM_003170 exon26 c.C3393T p.S1131S GCTGAGCTGTCGA . 205.0 98.0 209.0 0.0 . 165 . . Atlas-SNP TAOK1 57551 hgsc.bcm.edu hg19 17 27829620 27829620 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TAOK1 NM_025142 exon13 c.A1217G p.Y406C AAAATTACAGAGA . 91.0 15.0 88.0 0.0 . 151 . . Atlas-SNP NF1 4763 hgsc.bcm.edu hg19 17 29554603 29554603 + Missense_Mutation SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . NF1 NM_000267 exon20 c.A2388C p.K796N TCCAAAAGCCAAA . 144.0 18.0 131.0 0.0 . 1586 . . Atlas-SNP AP2B1 163 hgsc.bcm.edu hg19 17 33921086 33921086 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . AP2B1 NM_001282 exon2 c.G37T p.G13X AAAAAAGGTAAGT . 314.0 59.0 338.0 0.0 . 70 . . Atlas-SNP KRT31 3881 hgsc.bcm.edu hg19 17 39553767 39553767 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . KRT31 NM_002277 exon1 c.A25T p.S9C TCAGGCTGGGCAG . 55.0 16.0 52.0 0.0 . 158 . . Atlas-SNP KRT19 3880 hgsc.bcm.edu hg19 17 39684180 39684180 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . KRT19 NM_002276 exon1 c.A320G p.E107G TCTAGCTCGCCGT . 93.0 18.0 85.0 0.0 . 41 . . Atlas-SNP EFTUD2 9343 hgsc.bcm.edu hg19 17 42949889 42949889 + Missense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . EFTUD2 NM_004247 exon11 c.G919A p.V307I AGCAGACGTTACC . 116.0 49.0 112.0 0.0 . 85 . . Atlas-SNP CRHR1 1394 hgsc.bcm.edu hg19 17 43910820 43910820 + Silent SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CRHR1 NM_001145146 exon11 c.C933A p.I311I GCAGATCAATTTC . 79.0 19.0 92.0 0.0 . 48 . . Atlas-SNP MPO 4353 hgsc.bcm.edu hg19 17 56349142 56349142 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MPO NM_000250 exon11 c.G1904T p.G635V GGCGTGCCATACT . 74.0 22.0 82.0 0.0 . 114 . . Atlas-SNP TEX14 56155 hgsc.bcm.edu hg19 17 56663388 56663388 + Silent SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TEX14 NM_001201457 exon18 c.T2862A p.P954P ATGCCAAGGAGGT . 73.0 32.0 70.0 0.0 . 343 . . Atlas-SNP GH2 2689 hgsc.bcm.edu hg19 17 61958465 61958465 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . GH2 NM_022557 exon3 c.A215C p.Q72P GGGTTCTGCAGGA . 67.0 35.0 65.0 0.0 . 73 . . Atlas-SNP SDK2 54549 hgsc.bcm.edu hg19 17 71348683 71348683 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SDK2 NM_001144952 exon41 c.A5687C p.Y1896S AAGTCATAGCTCA . 57.0 18.0 63.0 0.0 . 219 . . Atlas-SNP DNAH17 8632 hgsc.bcm.edu hg19 17 76446801 76446801 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DNAH17 NM_173628 exon67 c.A10862T p.E3621V GTGGTCTCCAGAT . 62.0 35.0 60.0 0.0 . 347 . . Atlas-SNP MBD1 4152 hgsc.bcm.edu hg19 18 47801768 47801768 + Missense_Mutation SNP C C T rs372009396 TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MBD1 NM_001204137 exon9 c.G839A p.R280H GGAGTGCGTCGCT . 22.0 14.0 33.0 0.0 . 228 . . Atlas-SNP ATP9B 374868 hgsc.bcm.edu hg19 18 76966943 76966943 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ATP9B NM_198531 exon10 c.A961T p.S321C GAAGACAGTGACC . 23.0 17.0 40.0 0.0 . 96 . . Atlas-SNP ATCAY 85300 hgsc.bcm.edu hg19 19 3918830 3918830 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ATCAY NM_033064 exon11 c.T1028C p.L343P TTGTGCTGCCCAG . 63.0 38.0 115.0 0.0 . 84 . . Atlas-SNP SHD 56961 hgsc.bcm.edu hg19 19 4280338 4280338 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SHD NM_020209 exon1 c.T278A p.L93Q CCCTTCTGGGCGG . 33.0 15.0 52.0 0.0 . 33 . . Atlas-SNP PLIN4 729359 hgsc.bcm.edu hg19 19 4511838 4511838 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PLIN4 NM_001080400 exon3 c.A2092T p.K698X TCCCTTTGGCGAC . 113.0 41.0 198.0 0.0 . 191 . . Atlas-SNP FUT3 2525 hgsc.bcm.edu hg19 19 5843806 5843806 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FUT3 NM_001097640 exon3 c.A1045T p.R349W GGTACCTGGATTC . 127.0 70.0 220.0 0.0 . 30 . . Atlas-SNP KHSRP 8570 hgsc.bcm.edu hg19 19 6416517 6416517 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . KHSRP NM_003685 exon14 c.T1472C p.I491T TCCTCGATAAGCT . 60.0 24.0 108.0 0.0 . 51 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9065588 9065588 + Silent SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MUC16 NM_024690 exon3 c.T21858A p.S7286S TCTGCTAGAGGAG . 21.0 11.0 51.0 0.0 . 4315 . . Atlas-SNP KEAP1 9817 hgsc.bcm.edu hg19 19 10602745 10602745 + Missense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 KEAP1,middle_lobe,carcinoma,-1,1 KEAP1 NM_012289 exon3 c.C833T p.P278L AAGTTCGGCGTCA . 36.0 17.0 78.0 0.0 . 182 . . Atlas-SNP CCDC151 115948 hgsc.bcm.edu hg19 19 11545698 11545698 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CCDC151 NM_145045 exon1 c.C140A p.A47E GTCCACGCCTGGG . 31.0 22.0 79.0 0.0 . 44 . . Atlas-SNP CYP4F22 126410 hgsc.bcm.edu hg19 19 15636153 15636153 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CYP4F22 NM_173483 exon3 c.G6A p.L2L GATGCTGCCCATC . 28.0 7.0 34.0 0.0 . 74 . . Atlas-SNP OR10H1 26539 hgsc.bcm.edu hg19 19 15917916 15917916 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OR10H1 NM_013940 exon1 c.A932C p.Y311S TCTGGGTAGAGTT . 56.0 9.0 105.0 0.0 . 59 . . Atlas-SNP CHERP 10523 hgsc.bcm.edu hg19 19 16634007 16634007 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CHERP NM_006387 exon11 c.C1836T p.F612F AGGGCCGAAGTCA . 45.0 27.0 74.0 0.0 . 70 . . Atlas-SNP SIN3B 23309 hgsc.bcm.edu hg19 19 16973709 16973709 + Silent SNP A A C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SIN3B NM_015260 exon10 c.A1281C p.T427T TTGGACACTTCTC . 41.0 13.0 94.0 0.0 . 90 . . Atlas-SNP IL12RB1 3594 hgsc.bcm.edu hg19 19 18186614 18186614 + Silent SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . IL12RB1 NM_153701 exon7 c.G645T p.L215L GCTCCCCAGCTGC . 39.0 7.0 70.0 0.0 . 92 . . Atlas-SNP ZNF208 7757 hgsc.bcm.edu hg19 19 22157397 22157397 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ZNF208 NM_007153 exon4 c.C439A p.R147S TGCCACGTTGAAA . 50.0 16.0 93.0 0.0 . 817 . . Atlas-SNP HPN 3249 hgsc.bcm.edu hg19 19 35551262 35551262 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . HPN NM_182983 exon8 c.A466T p.R156W GGCCGCAGGAAGC . 21.0 4.0 25.0 0.0 . 45 . . Atlas-SNP POLR2I 5438 hgsc.bcm.edu hg19 19 36604924 36604924 + Missense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . POLR2I NM_006233 exon5 c.G308A p.R103Q TCGGCCCGCGCAC . 49.0 15.0 82.0 0.0 . 10 . . Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40376756 40376756 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 FCGBP,NS,carcinoma,0,1 FCGBP NM_003890 exon24 c.G11666T p.C3889F AAGATGCAATCTT . 301.0 38.0 624.0 0.0 . 416 . . Atlas-SNP MEGF8 1954 hgsc.bcm.edu hg19 19 42853717 42853717 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MEGF8 NM_001271938 exon14 c.G2365T p.A789S GGGTCTGCTCGCC . 14.0 10.0 39.0 0.0 . 358 . . Atlas-SNP PSG2 5670 hgsc.bcm.edu hg19 19 43576075 43576075 + Silent SNP T T C rs3198704 byfrequency;alternate_allele TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PSG2 NM_031246 exon4 c.A741G p.S247S GGTGTATGAAGGG . 108.0 17.0 148.0 0.0 . 84 . C|0.570;A|0.430 Atlas-SNP CLPTM1 1209 hgsc.bcm.edu hg19 19 45480646 45480646 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 CLPTM1_ENST00000347493,NS,lymphoid_neoplasm,0,3 CLPTM1 NM_001294 exon5 c.A515G p.K172R TCACCAAGAGTGG . 58.0 11.0 49.0 0.0 . 109 . . Atlas-SNP TRAPPC6A 79090 hgsc.bcm.edu hg19 19 45668133 45668133 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TRAPPC6A NM_024108 exon3 c.A290G p.D97G AGGCTGTCCATCT . 88.0 19.0 80.0 0.0 . 16 . . Atlas-SNP MARK4 57787 hgsc.bcm.edu hg19 19 45783689 45783689 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MARK4 NM_001199867 exon11 c.A1064T p.Q355L CCAGCCAGAAGTA . 277.0 22.0 226.0 0.0 . 132 . . Atlas-SNP ELSPBP1 64100 hgsc.bcm.edu hg19 19 48523032 48523032 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ELSPBP1 NM_022142 exon5 c.A412T p.N138Y AGAAATAATGTGG . 148.0 28.0 129.0 0.0 . 29 . . Atlas-SNP KCNJ14 3770 hgsc.bcm.edu hg19 19 48967700 48967700 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . KCNJ14 NM_013348 exon3 c.A977C p.D326A AACTGCTCTGGGG . 101.0 11.0 96.0 0.0 . 28 . . Atlas-SNP SIGLEC9 27180 hgsc.bcm.edu hg19 19 51630384 51630384 + Silent SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SIGLEC9 NM_001198558 exon4 c.T846A p.P282P TCCCCCTGCCAGG . 80.0 19.0 64.0 0.0 . 85 . . Atlas-SNP IGLON5 402665 hgsc.bcm.edu hg19 19 51830988 51830988 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . IGLON5 NM_001101372 exon7 c.T770A p.L257Q GCAGGCTGAGCAG . 19.0 5.0 24.0 0.0 . 31 . . Atlas-SNP SIGLEC10 89790 hgsc.bcm.edu hg19 19 51918290 51918290 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SIGLEC10 NM_033130 exon8 c.C1403A p.A468D GGGCTGGCCTGGG . 54.0 7.0 35.0 0.0 . 112 . . Atlas-SNP ZNF578 147660 hgsc.bcm.edu hg19 19 53013987 53013987 + Missense_Mutation SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 .,1 . NM_001099694 exon6 c.A353G p.Q118R AGTCACAAAAAGA . 191.0 58.0 175.0 0.0 . . . . Atlas-SNP ZNF347 84671 hgsc.bcm.edu hg19 19 53645692 53645692 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ZNF347 NM_001172675 exon5 c.C392A p.S131Y CTGAAGGAACATC . 85.0 10.0 71.0 0.0 . 87 . . Atlas-SNP VSTM1 284415 hgsc.bcm.edu hg19 19 54561741 54561741 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . VSTM1 NM_198481 exon3 c.T174A p.F58L CAGCACAAATGTC . 133.0 17.0 122.0 0.0 . 30 . . Atlas-SNP PTPRA 5786 hgsc.bcm.edu hg19 20 2987988 2987988 + Splice_Site SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PTPRA NM_002836 exon15 c.830-2A>T . TTTCCTAGATGAC . 41.0 9.0 50.0 0.0 . 75 . . Atlas-SNP SIGLEC1 6614 hgsc.bcm.edu hg19 20 3674260 3674260 + Silent SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SIGLEC1 NM_023068 exon13 c.G3342T p.P1114P CTGGGCCGGGTGA . 37.0 8.0 57.0 0.0 . 210 . . Atlas-SNP PLCB4 5332 hgsc.bcm.edu hg19 20 9364907 9364907 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PLCB4 NM_182797 exon12 c.T913A p.F305I CCAGTCTTCCTAG . 81.0 23.0 80.0 0.0 . 204 . . Atlas-SNP TNNC2 7125 hgsc.bcm.edu hg19 20 44453043 44453043 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . TNNC2 NM_003279 exon4 c.A202C p.S68R TGCCGCTGCCTGC . 33.0 20.0 40.0 0.0 . 12 . . Atlas-SNP ZNF334 55713 hgsc.bcm.edu hg19 20 45130957 45130957 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ZNF334 NM_018102 exon5 c.A1021T p.R341W GTGACCTGAAATG . 49.0 16.0 70.0 0.0 . 101 . . Atlas-SNP PREX1 57580 hgsc.bcm.edu hg19 20 47296240 47296240 + Silent SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PREX1 NM_020820 exon12 c.C1488T p.Y496Y ATCGTCGTAGCGG . 86.0 32.0 82.0 0.0 . 441 . . Atlas-SNP ATP9A 10079 hgsc.bcm.edu hg19 20 50255968 50255968 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ATP9A NM_006045 exon15 c.A1582G p.T528A CAGGGGTCCTCAG . 144.0 18.0 147.0 0.0 . 135 . . Atlas-SNP LAMA5 3911 hgsc.bcm.edu hg19 20 60890246 60890246 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LAMA5 NM_005560 exon59 c.A7885G p.I2629V GTGCGATCTTCTT . 21.0 8.0 46.0 0.0 . 268 . . Atlas-SNP DIDO1 11083 hgsc.bcm.edu hg19 20 61512777 61512777 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DIDO1 NM_001193369 exon16 c.A4531G p.M1511V GGGCCATGGAGAC . 33.0 5.0 33.0 0.0 . 321 . . Atlas-SNP PRPF6 24148 hgsc.bcm.edu hg19 20 62612637 62612637 + Silent SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PRPF6 NM_012469 exon1 c.G39T p.A13A GCCCGCGCCCCTC . 112.0 66.0 110.0 0.0 . 88 . . Atlas-SNP LIPI 149998 hgsc.bcm.edu hg19 21 15537598 15537598 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LIPI NM_198996 exon6 c.A910T p.T304S AGCTAGTCTTGTA . 59.0 32.0 103.0 0.0 . 95 . . Atlas-SNP LIPI 149998 hgsc.bcm.edu hg19 21 15537634 15537634 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LIPI NM_198996 exon6 c.A874C p.I292L ATGAAATAAAATT . 61.0 38.0 103.0 0.0 . 95 . . Atlas-SNP ABCG1 9619 hgsc.bcm.edu hg19 21 43646020 43646020 + Missense_Mutation SNP G G T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ABCG1 NM_207174 exon2 c.G315T p.K105N GAGGAAGAAAGGT . 31.0 24.0 64.0 0.0 . 140 . . Atlas-SNP MLC1 23209 hgsc.bcm.edu hg19 22 50506909 50506909 + Missense_Mutation SNP T T G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MLC1 NM_015166 exon10 c.A847C p.I283L TCATGATGCTGAA . 50.0 34.0 114.0 0.0 . 48 . . Atlas-SNP MXRA5 25878 hgsc.bcm.edu hg19 X 3240280 3240280 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . MXRA5 NM_015419 exon5 c.G3446T p.R1149M GGTCTCCTTCGAG . 79.0 65.0 108.0 0.0 . 815 . . Atlas-SNP KAL1 3730 hgsc.bcm.edu hg19 X 8503725 8503725 + Silent SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . KAL1 NM_000216 exon12 c.T1749A p.T583T AAACCCAGTCATG . 92.0 37.0 170.0 0.0 . 78 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32481605 32481605 + Missense_Mutation SNP T T A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . DMD NM_004006 exon25 c.A3383T p.E1128V TCTGTCTCAAGTC . 46.0 20.0 59.0 0.0 . 2127 . . Atlas-SNP CXorf30 645090 hgsc.bcm.edu hg19 X 36403105 36403105 + Missense_Mutation SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CXorf30 NM_001098843 exon19 c.T1886C p.L629S CTCCTTTGGTGAA . 166.0 138.0 239.0 0.0 . 76 . . Atlas-SNP RBM3 5935 hgsc.bcm.edu hg19 X 48433627 48433627 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RBM3 NM_006743 exon2 c.A59T p.Q20L ACGAGCAGGCACT . 30.0 13.0 57.0 0.0 . 20 . . Atlas-SNP ITIH6 347365 hgsc.bcm.edu hg19 X 54783989 54783989 + Missense_Mutation SNP G G C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . . NM_198510 exon8 c.C2518G p.L840V GCCCCAGGTGTGG . 55.0 47.0 83.0 0.0 . . . . Atlas-SNP RLIM 51132 hgsc.bcm.edu hg19 X 73812676 73812676 + Silent SNP T T C novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RLIM NM_183353 exon5 c.A474G p.P158P TGCAGATGGCTCA . 52.0 43.0 105.0 0.0 . 90 . . Atlas-SNP CYLC1 1538 hgsc.bcm.edu hg19 X 83128470 83128470 + Nonsense_Mutation SNP G G T rs146830604 bycluster;byfrequency;alternate_allele TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . CYLC1 NM_021118 exon4 c.G754T p.G252X TTAGTGGGACAGT . 110.0 98.0 220.0 0.0 . 272 . G|0.999;A|0.001 Atlas-SNP RPS6KA6 27330 hgsc.bcm.edu hg19 X 83352788 83352788 + Missense_Mutation SNP C C T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . RPS6KA6 NM_014496 exon19 c.G1845A p.M615I AGCCAACATTGTG . 146.0 123.0 269.0 2.0 . 116 . . Atlas-SNP ARMCX6 54470 hgsc.bcm.edu hg19 X 100871178 100871178 + Missense_Mutation SNP C C A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . ARMCX6 NM_001184768 exon4 c.G433T p.A145S AGCCCGCATCCTT . 99.0 67.0 200.0 0.0 . 21 . . Atlas-SNP IL13RA2 3598 hgsc.bcm.edu hg19 X 114244204 114244204 + Silent SNP A A G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . IL13RA2 NM_000640 exon7 c.T732C p.L244L AAAAGTAAGATAG . 74.0 25.0 145.0 0.0 . 66 . . Atlas-SNP SAGE1 55511 hgsc.bcm.edu hg19 X 134986663 134986663 + Missense_Mutation SNP A A T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SAGE1 NM_018666 exon4 c.A248T p.E83V TTTGTGAAGAGAG . 140.0 53.0 197.0 0.0 . 160 . . Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 11346 11346 + Nonsense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . . ENST00000361381 exon1 c.G587A p.W196X TAATATGACTAGC . 517.0 226.0 10.0 0.0 . . . . Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 15500 15500 + Missense_Mutation SNP G G A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . . ENST00000361789 exon1 c.G754A p.D252N CTAGGCGACCCAG . 430.0 58.0 16.0 0.0 . . . . Atlas-SNP HORMAD1 84072 hgsc.bcm.edu hg19 1 150676627 150676627 + Frame_Shift_Del DEL T T - novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . HORMAD1 NM_032132 exon12 c.916delG p.E306fs . . 190.0 28.0 181.0 0.0 . 59 . . Atlas-Indel,Pindel SH2D3A 10045 hgsc.bcm.edu hg19 19 6755179 6755180 + Frame_Shift_Ins INS - - G novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . SH2D3A NM_005490 exon5 c.644_645insC p.R215fs . . 67.0 12.0 102.0 0.0 . 53 . . Atlas-INDEL OR12D3 81797 hgsc.bcm.edu hg19 6 29342442 29342442 + Frame_Shift_Del DEL G G - novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . OR12D3 NM_030959 exon1 c.624delT p.A208fs . . 67.0 16.0 74.0 0.0 . 55 . . Atlas-Indel,Pindel PRC1 9055 hgsc.bcm.edu hg19 15 91522459 91522460 + Frame_Shift_Ins INS - - A novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PRC1 NM_199413 exon8 c.1036_1037insT p.E346_V347delinsX . . 42.0 10.0 79.0 0.0 . 51 . . Atlas-INDEL PRICKLE4 29964 hgsc.bcm.edu hg19 6 41754595 41754596 + Frame_Shift_Ins INS - - GC novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . PRICKLE4 NM_013397 exon8 c.883_884insGC p.S295fs . . 76.0 39.0 57.0 0.0 . 29 . . Atlas-INDEL LPO 4025 hgsc.bcm.edu hg19 17 56343575 56343575 + Frame_Shift_Del DEL T T - novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . LPO NM_006151 exon11 c.1580delA p.N527fs . . 82.0 27.0 91.0 0.0 . 73 . . Atlas-Indel,Pindel FIGNL1 63979 hgsc.bcm.edu hg19 7 50514059 50514060 + Frame_Shift_Ins INS - - T novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 . FIGNL1 NM_022116 exon4 c.927_928insA p.K309fs . . 113.0 28.0 148.0 0.0 . 73 . . Atlas-Indel,Pindel PRICKLE4 29964 hgsc.bcm.edu hg19 6 41754576 41754595 + Frame_Shift_Del DEL CGCTGCTGCCGGCGGTTCCA CGCTGCTGCCGGCGGTTCCA - rs76510495 alternate_allele TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 CGCTGCTGCCGGCGGTTCCA CGCTGCTGCCGGCGGTTCCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 .,2 PRICKLE4 NM_013397 exon8 c.863_882del p.288_294del . . 72.0 18.0 63.0 0.0 . 29 . . Pindel TP53 7157 hgsc.bcm.edu hg19 17 7576866 7576897 + Frame_Shift_Del DEL TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG - novel TCGA-CC-A7IK-01A-12D-A33Q-10 TCGA-CC-A7IK-10A-01D-A33Q-10 TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 93a9dd15-d593-4dcb-bf89-401618ca141b 437320c7-d091-4bee-9776-417b93833127 TP53_ENST00000269305,NS,carcinoma,0,2 TP53 NM_001126112 exon9 c.950_981del p.317_327del . . 15.0 13.0 81.0 0.0 . 33396 . . Pindel