Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm SCNN1D 6339 hgsc.bcm.edu hg19 1 1222886 1222886 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SCNN1D NM_001130413 exon10 c.1311-2A>T . CATTCCAGACAGT . 71.0 24.0 114.0 0.0 . 60 . . Atlas-SNP EXOSC10 5394 hgsc.bcm.edu hg19 1 11141273 11141273 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EXOSC10 NM_001001998 exon11 c.A1303T p.S435C CGTAGCTGAGCAT . 128.0 55.0 161.0 0.0 . 59 . . Atlas-SNP PRAMEF12 390999 hgsc.bcm.edu hg19 1 12837669 12837669 + Missense_Mutation SNP G G A rs201008398 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PRAMEF12 NM_001080830 exon3 c.G1379A p.G460D GCTGTGGCATCAG . 275.0 125.0 291.0 0.0 . 69 . G|0.993;T|0.007 Atlas-SNP PRAMEF4 400735 hgsc.bcm.edu hg19 1 12942173 12942173 + Missense_Mutation SNP C C G rs71232900 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 PRAMEF4,NS,carcinoma,0,1 PRAMEF4 NM_001009611 exon3 c.G377C p.C126S AGGAAGCACCCAT . 22.0 3.0 23.0 1.0 . 62 . C|0.500;G|0.500 Atlas-SNP FHAD1 114827 hgsc.bcm.edu hg19 1 15707218 15707218 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FHAD1 NM_052929 exon28 c.G3661A p.A1221T TGCAACGCAAGGT . 86.0 40.0 75.0 0.0 . 78 . . Atlas-SNP EPHA2 1969 hgsc.bcm.edu hg19 1 16459692 16459692 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EPHA2 NM_004431 exon11 c.A2036T p.E679V ACGCCCTCTAGGC . 47.0 25.0 52.0 0.0 . 102 . . Atlas-SNP UBR4 23352 hgsc.bcm.edu hg19 1 19433356 19433356 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . UBR4 NM_020765 exon82 c.C12210T p.A4070A CTTCCAGGCATCA . 184.0 83.0 255.0 0.0 . 415 . . Atlas-SNP CAMK2N1 55450 hgsc.bcm.edu hg19 1 20811760 20811760 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CAMK2N1 NM_018584 exon1 c.C113G p.A38G TGCCCGGCGCCGA . 46.0 17.0 47.0 0.0 . 7 . . Atlas-SNP RAP1GAP 5909 hgsc.bcm.edu hg19 1 21940198 21940198 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RAP1GAP NM_001145658 exon9 c.A589T p.T197S ACTTGGTCCTGAG . 36.0 18.0 54.0 0.0 . 119 . . Atlas-SNP WNT4 54361 hgsc.bcm.edu hg19 1 22446623 22446623 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . WNT4 NM_030761 exon5 c.T976C p.C326R AGCTGCAGCGTTC . 33.0 15.0 57.0 0.0 . 33 . . Atlas-SNP ZNF436 80818 hgsc.bcm.edu hg19 1 23689069 23689069 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF436 NM_001077195 exon4 c.A806G p.Q269R GTCCTCTGGTGCT . 114.0 5.0 140.0 0.0 . 49 . . Atlas-SNP ZNF683 257101 hgsc.bcm.edu hg19 1 26694278 26694278 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF683 NM_173574 exon3 c.C125G p.A42G CTGCAGGCTGAGA . 75.0 36.0 107.0 0.0 . 51 . . Atlas-SNP NUDC 10726 hgsc.bcm.edu hg19 1 27268120 27268120 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NUDC NM_006600 exon3 c.A332G p.E111G ATGAAGAGGCAGA . 175.0 15.0 200.0 0.0 . 15 . . Atlas-SNP LAPTM5 7805 hgsc.bcm.edu hg19 1 31215394 31215394 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LAPTM5 NM_006762 exon2 c.C90G p.I30M GCTCATGATCTGG . 59.0 27.0 102.0 0.0 . 30 . . Atlas-SNP PEF1 553115 hgsc.bcm.edu hg19 1 32101091 32101091 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PEF1 NM_012392 exon2 c.A57T p.G19G AGGGGCTCCTGGT . 270.0 106.0 308.0 0.0 . 20 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34174805 34174805 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 CSMD2,NS,carcinoma,0,1 CSMD2 NM_052896 exon22 c.T3340C p.F1114L CAGGAAAGTTGGG . 97.0 34.0 152.0 1.0 . 946 . . Atlas-SNP C1orf94 84970 hgsc.bcm.edu hg19 1 34663030 34663030 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C1orf94 NM_001134734 exon2 c.A525T p.R175S CCCCAGAGCCTCC . 104.0 46.0 88.0 0.0 . 156 . . Atlas-SNP GRIK3 2899 hgsc.bcm.edu hg19 1 37315910 37315910 + Splice_Site SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GRIK3 NM_000831 exon10 c.1326+2T>C . GCTCTTACCAGCA . 45.0 16.0 53.0 0.0 . 195 . . Atlas-SNP ZFYVE9 9372 hgsc.bcm.edu hg19 1 52761649 52761649 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZFYVE9 NM_004799 exon12 c.A3333G p.A1111A TCTTGCAGTAAGT . 102.0 43.0 115.0 0.0 . 131 . . Atlas-SNP ROR1 4919 hgsc.bcm.edu hg19 1 64515633 64515633 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ROR1 NM_001083592 exon3 c.T434C p.V145A CTGGAGTCTTGTT . 75.0 26.0 97.0 0.0 . 113 . . Atlas-SNP LRRIQ3 127255 hgsc.bcm.edu hg19 1 74621535 74621535 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LRRIQ3 NM_001105659 exon4 c.G589A p.E197K TTTCCTCTTCATA . 347.0 136.0 327.0 0.0 . 146 . . Atlas-SNP FPGT-TNNI3K 100526835 hgsc.bcm.edu hg19 1 74833633 74833633 + Nonsense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_001112808 exon15 c.A1609T p.K537X AAGATTAAAAGCA . 332.0 114.0 379.0 0.0 . . . . Atlas-SNP GBP6 163351 hgsc.bcm.edu hg19 1 89848365 89848365 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GBP6 NM_198460 exon8 c.A1295G p.H432R GAGGGCACAAGCT . 169.0 54.0 200.0 0.0 . 87 . . Atlas-SNP BRDT 676 hgsc.bcm.edu hg19 1 92428482 92428482 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BRDT NM_001242806 exon2 c.T171C p.D57D TGTGGATGCTGTG . 128.0 46.0 124.0 0.0 . 133 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94568641 94568641 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ABCA4 NM_000350 exon5 c.T500G p.L167R TTAATGAGAAATA . 97.0 33.0 113.0 0.0 . 275 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103453234 103453234 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . COL11A1 NM_080629 exon30 c.A2493T p.A831A TGGGCCTGCTCGA . 91.0 35.0 113.0 0.0 . 972 . . Atlas-SNP WDR47 22911 hgsc.bcm.edu hg19 1 109525342 109525342 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . WDR47 NM_001142550 exon12 c.G2179A p.G727S CTGGGCCTTCCAT . 138.0 61.0 133.0 0.0 . 56 . . Atlas-SNP CELSR2 1952 hgsc.bcm.edu hg19 1 109801366 109801366 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CELSR2 NM_001408 exon2 c.G3623C p.R1208P AGGAGCGCCTATA . 57.0 25.0 74.0 0.0 . 228 . . Atlas-SNP UBL4B 164153 hgsc.bcm.edu hg19 1 110655547 110655547 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 UBL4B,right_upper_lobe,carcinoma,0,1 UBL4B NM_203412 exon1 c.G391T p.E131X CACCTGGAGCAGC . 98.0 37.0 117.0 1.0 . 22 . . Atlas-SNP KCNA2 3737 hgsc.bcm.edu hg19 1 111146974 111146974 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KCNA2 NM_001204269 exon3 c.A431T p.E144V TGAAACTCATTTT . 95.0 45.0 82.0 0.0 . 61 . . Atlas-SNP KCNA3 3738 hgsc.bcm.edu hg19 1 111216207 111216207 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KCNA3 NM_002232 exon1 c.G1225T p.V409F GGATGACCCCAAT . 70.0 28.0 92.0 0.0 . 91 . . Atlas-SNP SIKE1 80143 hgsc.bcm.edu hg19 1 115318966 115318966 + Splice_Site SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 SIKE1,bladder,carcinoma,0,1 SIKE1 NM_001102396 exon5 c.534+1G>C . ATCTTACCTCTAA . 118.0 9.0 106.0 1.0 . 12 . . Atlas-SNP CD101 9398 hgsc.bcm.edu hg19 1 117556093 117556093 + Missense_Mutation SNP G G T rs201304832 bycluster;alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 CD101,NS,lymphoid_neoplasm,0,1 CD101 NM_001256109 exon4 c.G907T p.V303F GAACTGGTTTGCC . 108.0 42.0 136.0 0.0 . 95 . G|0.999;A|0.001 Atlas-SNP GPR89B 51463 hgsc.bcm.edu hg19 1 147408746 147408746 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GPR89B NM_016334 exon2 c.A48T p.L16L GATACTATTTTTT . 383.0 87.0 249.0 0.0 . 6 . . Atlas-SNP MTMR11 10903 hgsc.bcm.edu hg19 1 149902441 149902441 + Splice_Site SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MTMR11 NM_181873 exon15 c.1249-2A>G . TTTAACTGGACAG . 76.0 11.0 35.0 0.0 . 136 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152081242 152081242 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TCHH NM_007113 exon3 c.A4451G p.D1484G TTTCTGTCACGCT . 246.0 49.0 147.0 0.0 . 275 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152280562 152280562 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FLG NM_002016 exon3 c.A6800T p.H2267L CCATGATGGTTTC . 367.0 71.0 245.0 0.0 . 900 . . Atlas-SNP FLG2 388698 hgsc.bcm.edu hg19 1 152329823 152329823 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FLG2 NM_001014342 exon3 c.T439A p.S147T CCCTTGAGTGCCC . 388.0 272.0 266.0 0.0 . 431 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158632708 158632708 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SPTA1 NM_003126 exon17 c.G2248C p.A750P ATGCAGCCAGGTC . 209.0 10.0 148.0 0.0 . 720 . . Atlas-SNP DARC 2532 hgsc.bcm.edu hg19 1 159176146 159176146 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 DARC_ENST00000368121,NS,carcinoma,0,1 DARC NM_001122951 exon1 c.T923C p.L308P TCGCCCTATTCTG . 160.0 37.0 104.0 0.0 . 76 . . Atlas-SNP LY9 4063 hgsc.bcm.edu hg19 1 160784465 160784465 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LY9 NM_001261457 exon4 c.T986C p.I329T TGAAGATAGAGGA . 265.0 163.0 164.0 1.0 . 115 . . Atlas-SNP FCGR2A 2212 hgsc.bcm.edu hg19 1 161479767 161479767 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FCGR2A NM_001136219 exon4 c.C522T p.I174I CTCCATCCCACAA . 1276.0 240.0 853.0 1.0 . 38 . . Atlas-SNP METTL13 51603 hgsc.bcm.edu hg19 1 171753199 171753199 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . METTL13 NM_015935 exon2 c.G473T p.C158F ATCTCTGCATCTC . 190.0 49.0 112.0 0.0 . 67 . . Atlas-SNP SLC9C2 284525 hgsc.bcm.edu hg19 1 173526479 173526479 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_178527 exon10 c.G1215T p.M405I TCCTACCATTTGT . 445.0 95.0 262.0 0.0 . . . . Atlas-SNP ZBTB37 84614 hgsc.bcm.edu hg19 1 173842760 173842760 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZBTB37 NM_032522 exon4 c.A1079T p.Y360F CTGTGTATGAATA . 234.0 38.0 130.0 0.0 . 38 . . Atlas-SNP ASTN1 460 hgsc.bcm.edu hg19 1 176927577 176927577 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ASTN1 NM_004319 exon10 c.G1640A p.S547N CTCTTGCTGAGGG . 278.0 72.0 206.0 0.0 . 314 . . Atlas-SNP FAM5B 57795 hgsc.bcm.edu hg19 1 177245534 177245534 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAM5B NM_021165 exon6 c.T976C p.S326P CAGGACTCCTGGG . 691.0 69.0 495.0 0.0 . 191 . . Atlas-SNP FAM163A 148753 hgsc.bcm.edu hg19 1 179783192 179783192 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAM163A NM_173509 exon5 c.T372G p.F124L CTCCTTTGCTCCC . 356.0 37.0 229.0 0.0 . 24 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181753861 181753861 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CACNA1E NM_001205293 exon41 c.C5535A p.H1845Q GCCTCACCTATCC . 202.0 42.0 152.0 0.0 . 778 . . Atlas-SNP DHX9 1660 hgsc.bcm.edu hg19 1 182836133 182836133 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DHX9 NM_001357 exon14 c.A1512T p.G504G TCGAGGAATCAGT . 167.0 35.0 117.0 0.0 . 114 . . Atlas-SNP COLGALT2 23127 hgsc.bcm.edu hg19 1 183908097 183908097 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 GLT25D2,colon,carcinoma,0,2 . NM_015101 exon12 c.C1679T p.T560M TAGTGCGTAGGGT . 472.0 321.0 277.0 2.0 . . . . Atlas-SNP FAM5C 339479 hgsc.bcm.edu hg19 1 190067337 190067337 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAM5C NM_199051 exon8 c.A2112T p.L704L GATCTCTAGTAGT . 303.0 67.0 147.0 0.0 . 343 . . Atlas-SNP CAMSAP2 23271 hgsc.bcm.edu hg19 1 200817745 200817745 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_203459 exon11 c.A1848T p.S616S TCCTTCAGAAGAT . 219.0 42.0 80.0 0.0 . . . . Atlas-SNP SYT2 127833 hgsc.bcm.edu hg19 1 202571584 202571584 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SYT2 NM_177402 exon5 c.T555A p.P185P CTTGTCAGGAAGG . 132.0 99.0 77.0 0.0 . 51 . . Atlas-SNP FMOD 2331 hgsc.bcm.edu hg19 1 203316593 203316593 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FMOD NM_002023 exon2 c.A806G p.K269R AGCAGCTTGGGCG . 183.0 36.0 111.0 0.0 . 49 . . Atlas-SNP AVPR1B 553 hgsc.bcm.edu hg19 1 206230897 206230897 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . AVPR1B NM_000707 exon2 c.C1030A p.H344N AACAGCCACCTGT . 257.0 72.0 138.0 0.0 . 47 . . Atlas-SNP CR2 1380 hgsc.bcm.edu hg19 1 207646133 207646133 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CR2 NM_001006658 exon10 c.A1587T p.P529P CCCACCACCCCCT . 135.0 38.0 89.0 0.0 . 164 . . Atlas-SNP LAMB3 3914 hgsc.bcm.edu hg19 1 209789949 209789949 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LAMB3 NM_000228 exon22 c.A3249T p.Q1083H ATACTTTTGTTTT . 281.0 50.0 205.0 0.0 . 136 . . Atlas-SNP DIEXF 27042 hgsc.bcm.edu hg19 1 210015611 210015611 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DIEXF NM_014388 exon9 c.A1487G p.H496R CAAAGCATTTGAT . 162.0 44.0 93.0 0.0 . 97 . . Atlas-SNP KCNH1 3756 hgsc.bcm.edu hg19 1 211192594 211192594 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 KCNH1,NS,carcinoma,0,1 KCNH1 NM_172362 exon6 c.T563A p.L188Q AGCTGTAGGACCT . 58.0 29.0 25.0 0.0 . 199 . . Atlas-SNP SLC30A1 7779 hgsc.bcm.edu hg19 1 211751602 211751602 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLC30A1 NM_021194 exon1 c.G353T p.G118V CCGACCCCAAGGA . 205.0 43.0 105.0 0.0 . 27 . . Atlas-SNP C1orf227 149643 hgsc.bcm.edu hg19 1 213009317 213009317 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C1orf227 NM_001024601 exon2 c.A175C p.T59P TATCAGTAAAGGA . 302.0 213.0 204.0 1.0 . 9 . . Atlas-SNP DNAH14 127602 hgsc.bcm.edu hg19 1 225270296 225270296 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DNAH14 NM_001373 exon20 c.C3182T p.T1061I TGGTAACAGAGTT . 462.0 102.0 261.0 0.0 . 300 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228462464 228462464 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OBSCN NM_001271223 exon24 c.G7000T p.D2334Y ATCTCAGACCTGG . 96.0 16.0 73.0 0.0 . 2142 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228559946 228559946 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OBSCN NM_001271223 exon105 c.A24338T p.E8113V AGGCTGAGGATCT . 192.0 39.0 113.0 0.0 . 2142 . . Atlas-SNP TSNAX 7257 hgsc.bcm.edu hg19 1 231700443 231700443 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TSNAX NM_005999 exon6 c.G665T p.R222L TTTTACGTCAGGT . 359.0 240.0 237.0 0.0 . 14 . . Atlas-SNP DISC1 27185 hgsc.bcm.edu hg19 1 231829654 231829654 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DISC1 NM_001164541 exon2 c.A150T p.T50T CTCGACAGGGCCT . 134.0 25.0 93.0 0.0 . 207 . . Atlas-SNP C1orf101 257044 hgsc.bcm.edu hg19 1 244681971 244681971 + Silent SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C1orf101 NM_173807 exon8 c.T507G p.V169V AAAAGTTTATTCT . 623.0 137.0 387.0 0.0 . 158 . . Atlas-SNP OR2G3 81469 hgsc.bcm.edu hg19 1 247769234 247769234 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR2G3 NM_001001914 exon1 c.C347A p.A116D TCTTGGCTGACAT . 288.0 202.0 186.0 1.0 . 108 . . Atlas-SNP OR2M3 127062 hgsc.bcm.edu hg19 1 248366439 248366439 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR2M3 NM_001004689 exon1 c.C70T p.H24Y CCCACCCACACCT . 563.0 114.0 339.0 0.0 . 116 . . Atlas-SNP OR2G6 391211 hgsc.bcm.edu hg19 1 248685871 248685871 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR2G6 NM_001013355 exon1 c.T924C p.S308S GGGTAGTGCTGCT . 74.0 8.0 37.0 0.0 . 124 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1983303 1983303 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MYT1L NM_015025 exon7 c.G79T p.E27X ACAGCTCTTGTAT . 92.0 32.0 141.0 0.0 . 241 . . Atlas-SNP OSR1 130497 hgsc.bcm.edu hg19 2 19552136 19552136 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OSR1 NM_145260 exon3 c.A701G p.Q234R CACTCTTGACACT . 115.0 48.0 108.0 0.0 . 29 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21229513 21229513 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . APOB NM_000384 exon26 c.T10227A p.S3409R GTTATGACTACCC . 109.0 48.0 103.0 0.0 . 761 . . Atlas-SNP KLHL29 114818 hgsc.bcm.edu hg19 2 23918605 23918605 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KLHL29 NM_052920 exon9 c.T1655A p.L552Q GGGACCTGGTGAA . 64.0 21.0 93.0 0.0 . 47 . . Atlas-SNP EMILIN1 11117 hgsc.bcm.edu hg19 2 27302028 27302028 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EMILIN1 NM_007046 exon1 c.A95G p.Y32C GCCTCTACACAGG . 47.0 16.0 70.0 0.0 . 75 . . Atlas-SNP WDR43 23160 hgsc.bcm.edu hg19 2 29169340 29169340 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . WDR43 NM_015131 exon17 c.A1829T p.D610V CTGATGATGAAAT . 126.0 44.0 120.0 0.0 . 38 . . Atlas-SNP QPCT 25797 hgsc.bcm.edu hg19 2 37599570 37599570 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . QPCT NM_012413 exon6 c.T895A p.Y299N TACAGTTATGGAG . 99.0 41.0 119.0 0.0 . 34 . . Atlas-SNP CAMKMT 79823 hgsc.bcm.edu hg19 2 44933426 44933426 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CAMKMT NM_024766 exon5 c.G438A p.R146R TTTCAGGGCCCTT . 90.0 40.0 94.0 0.0 . 20 . . Atlas-SNP NRXN1 9378 hgsc.bcm.edu hg19 2 50149221 50149221 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 NRXN1_ENST00000536085,NS,carcinoma,0,3 NRXN1 NM_001135659 exon24 c.C4505A p.S1502X TGGTATGAGCCTT . 125.0 53.0 126.0 0.0 . 1118 . . Atlas-SNP CCT4 10575 hgsc.bcm.edu hg19 2 62112155 62112155 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCT4 NM_001256721 exon2 c.G180C p.M60I CTTTACCATTTTA . 105.0 51.0 124.0 0.0 . 38 . . Atlas-SNP RAB11FIP5 26056 hgsc.bcm.edu hg19 2 73315575 73315575 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RAB11FIP5 NM_015470 exon3 c.A1171G p.S391G TACGACTGCCTCT . 39.0 15.0 39.0 0.0 . 66 . . Atlas-SNP SEMA4F 10505 hgsc.bcm.edu hg19 2 74883712 74883712 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SEMA4F NM_001271662 exon2 c.C197A p.S66Y ATTACTCTGTTCT . 119.0 52.0 148.0 0.0 . 89 . . Atlas-SNP VWA3B 200403 hgsc.bcm.edu hg19 2 98797635 98797635 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . VWA3B NM_144992 exon9 c.T1271C p.I424T TGGATATAAAAGC . 125.0 48.0 196.0 0.0 . 138 . . Atlas-SNP IL18RAP 8807 hgsc.bcm.edu hg19 2 103040730 103040730 + Missense_Mutation SNP A A T rs138125296 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IL18RAP NM_003853 exon5 c.A435T p.L145F GATTTTAGAAGTT . 177.0 79.0 161.0 0.0 . 102 . A|1.000;G|0.000 Atlas-SNP GPR45 11250 hgsc.bcm.edu hg19 2 105858393 105858393 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GPR45 NM_007227 exon1 c.C78A p.S26S GGGGTCCACCCAG . 121.0 50.0 132.0 0.0 . 73 . . Atlas-SNP ACOXL 55289 hgsc.bcm.edu hg19 2 111556610 111556610 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ACOXL NM_001142807 exon7 c.T480A p.V160V CATCGTTCCTGTC . 118.0 62.0 115.0 0.0 . 93 . . Atlas-SNP DPP10 57628 hgsc.bcm.edu hg19 2 116593732 116593732 + Splice_Site SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DPP10 NM_020868 exon22 c.1951-1G>T . CCCCCAGGGTTAT . 125.0 46.0 127.0 0.0 . 415 . . Atlas-SNP STEAP3 55240 hgsc.bcm.edu hg19 2 120020691 120020691 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . STEAP3 NM_182915 exon6 c.G1274T p.W425L ACGGCTGGACCCG . 47.0 21.0 41.0 0.0 . 44 . . Atlas-SNP GLI2 2736 hgsc.bcm.edu hg19 2 121743964 121743964 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 GLI2,NS,carcinoma,0,1 GLI2 NM_005270 exon12 c.G2067T p.G689G GCCCGGGAGCCTG . 138.0 66.0 160.0 0.0 . 187 . . Atlas-SNP ARHGEF4 50649 hgsc.bcm.edu hg19 2 131803692 131803692 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ARHGEF4 NM_015320 exon14 c.T2003C p.L668P TGGTGCTGGCGGA . 50.0 13.0 57.0 0.0 . 89 . . Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152522831 152522831 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NEB NM_004543 exon41 c.T4804A p.Y1602N TCATGTAGTGAAC . 86.0 34.0 93.0 0.0 . 1697 . . Atlas-SNP TANC1 85461 hgsc.bcm.edu hg19 2 160087091 160087091 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TANC1 NM_033394 exon27 c.C5154A p.P1718P CAGACCCCGCAAC . 111.0 43.0 135.0 0.0 . 157 . . Atlas-SNP SCN1A 6323 hgsc.bcm.edu hg19 2 166897949 166897949 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SCN1A NM_001165963 exon13 c.C2207T p.P736L CAACAGGGTGGGC . 73.0 30.0 72.0 0.0 . 641 . . Atlas-SNP NOSTRIN 115677 hgsc.bcm.edu hg19 2 169681160 169681160 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NOSTRIN NM_001039724 exon3 c.A130C p.S44R GAAATTAGCTATG . 600.0 221.0 701.0 0.0 . 68 . . Atlas-SNP PPIG 9360 hgsc.bcm.edu hg19 2 170465241 170465241 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PPIG NM_004792 exon7 c.A350G p.K117R GAGGGAAGGATAC . 356.0 154.0 378.0 0.0 . 100 . . Atlas-SNP CDCA7 83879 hgsc.bcm.edu hg19 2 174230178 174230178 + Splice_Site SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CDCA7 NM_031942 exon7 c.895-2A>C . TAATGCAGGAAGA . 65.0 34.0 80.0 0.0 . 48 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179431803 179431803 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TTN NM_001267550 exon326 c.A79056G p.L26352L ACCTTCTAAGAGT . 119.0 43.0 120.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179587117 179587117 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TTN NM_001267550 exon77 c.A22397C p.Q7466P GAAGTCTGTAGAT . 98.0 38.0 109.0 0.0 . 18412 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196913052 196913052 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DNAH7 NM_018897 exon4 c.A218T p.E73V AATGGTTCTGGAC . 59.0 25.0 61.0 0.0 . 512 . . Atlas-SNP HECW2 57520 hgsc.bcm.edu hg19 2 197183894 197183894 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . HECW2 NM_020760 exon9 c.G1720A p.D574N GCTGATCTACCTC . 101.0 39.0 108.0 0.0 . 239 . . Atlas-SNP ALS2CR11 151254 hgsc.bcm.edu hg19 2 202400648 202400648 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ALS2CR11 NM_001168217 exon13 c.T1602A p.A534A CCTTTCAGCTAAG . 28.0 12.0 33.0 0.0 . 194 . . Atlas-SNP ALS2 57679 hgsc.bcm.edu hg19 2 202593826 202593826 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ALS2 NM_020919 exon14 c.G2661A p.K887K TGCTTCCTTCCTT . 162.0 86.0 180.0 0.0 . 172 . . Atlas-SNP PARD3B 117583 hgsc.bcm.edu hg19 2 206036933 206036933 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PARD3B NM_057177 exon12 c.1621-2A>T . TGCCTTAGGATGG . 128.0 50.0 148.0 0.0 . 314 . . Atlas-SNP MAP2 4133 hgsc.bcm.edu hg19 2 210557752 210557752 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MAP2 NM_002374 exon7 c.T858A p.P286P ATCTCCTGGCCCT . 141.0 60.0 165.0 0.0 . 372 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210805966 210805966 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . UNC80 NM_032504 exon43 c.T6470C p.L2157P TTGGCCTCGACAC . 112.0 52.0 135.0 0.0 . 280 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215833480 215833480 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ABCA12 NM_173076 exon38 c.T5742C p.D1914D TGTTATATCAAAA . 122.0 44.0 109.0 0.0 . 368 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215914355 215914355 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ABCA12 NM_173076 exon6 c.T688A p.S230T CCTGGGAGAACTG . 95.0 43.0 111.0 0.0 . 368 . . Atlas-SNP TNS1 7145 hgsc.bcm.edu hg19 2 218750502 218750502 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TNS1 NM_022648 exon13 c.A706G p.I236V GCTCGATGGTGAT . 74.0 29.0 72.0 0.0 . 251 . . Atlas-SNP ASIC4 55515 hgsc.bcm.edu hg19 2 220396495 220396495 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_182847 exon2 c.G979T p.G327W CGCTATGGGAAGT . 292.0 113.0 409.0 1.0 . . . . Atlas-SNP SERPINE2 5270 hgsc.bcm.edu hg19 2 224866418 224866418 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SERPINE2 NM_001136530 exon2 c.T236A p.L79Q GCCCCCAGCTGAA . 63.0 27.0 63.0 0.0 . 103 . . Atlas-SNP COL4A4 1286 hgsc.bcm.edu hg19 2 227886777 227886777 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . COL4A4 NM_000092 exon44 c.C4203T p.G1401G TGAGGGGCCTCTC . 247.0 105.0 240.0 1.0 . 215 . . Atlas-SNP FARP2 9855 hgsc.bcm.edu hg19 2 242380941 242380941 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FARP2 NM_014808 exon13 c.C1381T p.L461F CAGCCCCTCGGGC . 89.0 40.0 96.0 0.0 . 92 . . Atlas-SNP CAND2 23066 hgsc.bcm.edu hg19 3 12858225 12858225 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CAND2 NM_001162499 exon10 c.T1794A p.L598L CCACCTTGTAGGC . 124.0 105.0 149.0 1.0 . 138 . . Atlas-SNP NUP210 23225 hgsc.bcm.edu hg19 3 13401819 13401819 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NUP210 NM_024923 exon15 c.A2105G p.N702S TGATAATTCCGGG . 115.0 101.0 161.0 0.0 . 182 . . Atlas-SNP FGD5 152273 hgsc.bcm.edu hg19 3 14860937 14860937 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FGD5 NM_152536 exon1 c.C359A p.S120X AGGATTCAGTGGC . 187.0 158.0 204.0 1.0 . 248 . . Atlas-SNP ITGA9 3680 hgsc.bcm.edu hg19 3 37774280 37774280 + Silent SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ITGA9 NM_002207 exon19 c.A2145C p.S715S GAGGTCAAAGTCA . 74.0 63.0 92.0 0.0 . 98 . . Atlas-SNP SCN10A 6336 hgsc.bcm.edu hg19 3 38766700 38766700 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SCN10A NM_006514 exon17 c.T3193G p.W1065G CTTTCCACGTCTC . 60.0 45.0 140.0 1.0 . 359 . . Atlas-SNP SCN11A 11280 hgsc.bcm.edu hg19 3 38926834 38926834 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SCN11A NM_014139 exon17 c.T3009C p.F1003F CCATCCAAAGCCA . 118.0 102.0 144.0 1.0 . 296 . . Atlas-SNP PTH1R 5745 hgsc.bcm.edu hg19 3 46937344 46937344 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PTH1R NM_001184744 exon4 c.G298T p.G100C CCCACTGGCAGCA . 100.0 90.0 132.0 1.0 . 49 . . Atlas-SNP NBEAL2 23218 hgsc.bcm.edu hg19 3 47042832 47042832 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NBEAL2 NM_015175 exon29 c.G4548T p.L1516L GGTCCTGGCCAGC . 41.0 36.0 56.0 0.0 . 267 . . Atlas-SNP STAB1 23166 hgsc.bcm.edu hg19 3 52554842 52554842 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . STAB1 NM_015136 exon55 c.G5729T p.R1910L GCTGGCGCTTCTA . 42.0 32.0 54.0 0.0 . 178 . . Atlas-SNP CACNA1D 776 hgsc.bcm.edu hg19 3 53700544 53700544 + Nonsense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CACNA1D NM_001128840 exon7 c.G1098A p.W366X GGGCTGGACAGAT . 128.0 6.0 123.0 0.0 . 324 . . Atlas-SNP LRTM1 57408 hgsc.bcm.edu hg19 3 54958771 54958771 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LRTM1 NM_020678 exon2 c.A479T p.Q160L TCAAGCTGCTGAA . 140.0 123.0 187.0 0.0 . 52 . . Atlas-SNP KBTBD8 84541 hgsc.bcm.edu hg19 3 67049479 67049479 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KBTBD8 NM_032505 exon2 c.C91T p.H31Y CCCTTCCATGCTT . 271.0 93.0 208.0 0.0 . 101 . . Atlas-SNP TMF1 7110 hgsc.bcm.edu hg19 3 69097054 69097054 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TMF1 NM_007114 exon2 c.A802G p.I268V CACTTATTACACT . 68.0 30.0 58.0 0.0 . 77 . . Atlas-SNP ROBO1 6091 hgsc.bcm.edu hg19 3 78684981 78684981 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ROBO1 NM_002941 exon23 c.G3315T p.Q1105H TTGTTTCTGCTGT . 326.0 95.0 275.0 0.0 . 833 . . Atlas-SNP ROBO1 6091 hgsc.bcm.edu hg19 3 78711213 78711213 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ROBO1 NM_002941 exon15 c.T2018A p.L673Q TTTCCCAGCTCTC . 291.0 86.0 232.0 0.0 . 833 . . Atlas-SNP ZBED2 79413 hgsc.bcm.edu hg19 3 111312691 111312691 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZBED2 NM_024508 exon2 c.C358A p.Q120K GGCGCTGCCCAGC . 67.0 30.0 70.0 0.0 . 22 . . Atlas-SNP PLCXD2 257068 hgsc.bcm.edu hg19 3 111394182 111394182 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PLCXD2 NM_001185106 exon1 c.C90A p.V30V GGAGGTCTGCAAT . 213.0 91.0 266.0 0.0 . 36 . . Atlas-SNP CCDC80 151887 hgsc.bcm.edu hg19 3 112358178 112358178 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCDC80 NM_199511 exon2 c.A575G p.Q192R CCTGCCTGGTGGA . 130.0 63.0 126.0 0.0 . 100 . . Atlas-SNP BOC 91653 hgsc.bcm.edu hg19 3 112993376 112993376 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BOC NM_033254 exon9 c.A1389T p.P463P GTGTCCAGGAGAG . 129.0 61.0 182.0 0.0 . 139 . . Atlas-SNP C3orf30 152405 hgsc.bcm.edu hg19 3 118865983 118865983 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C3orf30 NM_152539 exon1 c.A947G p.E316G CCACTGAACTAGC . 136.0 57.0 130.0 0.0 . 64 . . Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121208148 121208148 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . POLQ NM_199420 exon16 c.G3630A p.Q1210Q ATTTTTCTGTTTG . 121.0 53.0 109.0 0.0 . 273 . . Atlas-SNP KBTBD12 166348 hgsc.bcm.edu hg19 3 127642796 127642796 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KBTBD12 NM_207335 exon1 c.A892T p.S298C GATGCCAGTTTTT . 131.0 60.0 162.0 0.0 . 41 . . Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130290136 130290136 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . COL6A6 NM_001102608 exon6 c.T2876G p.M959R TAGCCATGGCAGG . 193.0 80.0 240.0 0.0 . 497 . . Atlas-SNP ACPP 55 hgsc.bcm.edu hg19 3 132075574 132075574 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ACPP NM_001099 exon10 c.A1013T p.E338V AGCACGAGCCGTA . 99.0 26.0 158.0 0.0 . 118 . . Atlas-SNP C3orf36 80111 hgsc.bcm.edu hg19 3 133647332 133647332 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C3orf36 NM_025041 exon1 c.T316C p.C106R GTGAGCAAGGTGG . 134.0 45.0 175.0 0.0 . 13 . . Atlas-SNP XRN1 54464 hgsc.bcm.edu hg19 3 142145680 142145680 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . XRN1 NM_001042604 exon3 c.A312T p.S104S CTTTGCTGACCTT . 68.0 40.0 94.0 0.0 . 138 . . Atlas-SNP IGSF10 285313 hgsc.bcm.edu hg19 3 151160801 151160801 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IGSF10 NM_178822 exon5 c.A5934G p.P1978P CTTGGATGGTAAC . 94.0 38.0 108.0 0.0 . 279 . . Atlas-SNP VEPH1 79674 hgsc.bcm.edu hg19 3 157031464 157031464 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . VEPH1 NM_001167912 exon11 c.G1956T p.G652G AGCACCCCCTGCC . 91.0 33.0 103.0 0.0 . 129 . . Atlas-SNP B3GALNT1 8706 hgsc.bcm.edu hg19 3 160803874 160803874 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . B3GALNT1 NM_001038628 exon8 c.T669C p.H223H AGAAATATGGGTT . 69.0 25.0 84.0 0.0 . 34 . . Atlas-SNP SERPINI2 5276 hgsc.bcm.edu hg19 3 167183368 167183368 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SERPINI2 NM_001012303 exon5 c.A602T p.Q201L AATTTCTGTTTCC . 102.0 43.0 106.0 0.0 . 85 . . Atlas-SNP PLD1 5337 hgsc.bcm.edu hg19 3 171395376 171395376 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PLD1 NM_002662 exon17 c.A1976G p.Q659R TCAAGTTGAACCC . 113.0 56.0 147.0 0.0 . 134 . . Atlas-SNP ABCC5 10057 hgsc.bcm.edu hg19 3 183689367 183689367 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ABCC5 NM_005688 exon11 c.A1745T p.D582V TCCAGATCGATGC . 52.0 21.0 108.0 0.0 . 142 . . Atlas-SNP LEPREL1 55214 hgsc.bcm.edu hg19 3 189690681 189690681 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LEPREL1 NM_018192 exon11 c.T1681C p.C561R TTCGGCAGACCAT . 250.0 106.0 268.0 0.0 . 95 . . Atlas-SNP OPA1 4976 hgsc.bcm.edu hg19 3 193332727 193332727 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OPA1 NM_130832 exon2 c.A248T p.Q83L GCTACCAGCCTCG . 246.0 17.0 280.0 0.0 . 79 . . Atlas-SNP OPA1 4976 hgsc.bcm.edu hg19 3 193374929 193374929 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OPA1 NM_130837 exon23 c.G2239T p.E747X GGGAAAGAGCATG . 131.0 64.0 191.0 0.0 . 79 . . Atlas-SNP ACAP2 23527 hgsc.bcm.edu hg19 3 195112843 195112843 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ACAP2 NM_012287 exon2 c.A87T p.A29A CAATTCTGCCACA . 775.0 294.0 806.0 1.0 . 72 . . Atlas-SNP EVC2 132884 hgsc.bcm.edu hg19 4 5578129 5578129 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EVC2 NM_147127 exon18 c.C3110T p.A1037V TGGGCTGCCTCCT . 72.0 37.0 62.0 0.0 . 202 . . Atlas-SNP ABLIM2 84448 hgsc.bcm.edu hg19 4 8029484 8029484 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ABLIM2 NM_001130083 exon13 c.1267+2T>A . TGCCTTACCTCGG . 121.0 43.0 106.0 0.0 . 59 . . Atlas-SNP FGFBP1 9982 hgsc.bcm.edu hg19 4 15938116 15938116 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FGFBP1 NM_005130 exon3 c.A140T p.Q47L TTAATCTGGGTGT . 219.0 128.0 149.0 0.0 . 26 . . Atlas-SNP SLIT2 9353 hgsc.bcm.edu hg19 4 20255500 20255500 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLIT2 NM_004787 exon1 c.A62G p.N21S TCCTGAACAAGGT . 42.0 11.0 17.0 0.0 . 290 . . Atlas-SNP SLIT2 9353 hgsc.bcm.edu hg19 4 20525440 20525440 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLIT2 NM_004787 exon13 c.C1188A p.H396Q TCTCCACAACTTG . 251.0 15.0 208.0 0.0 . 290 . . Atlas-SNP SEPSECS 51091 hgsc.bcm.edu hg19 4 25160667 25160667 + Silent SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SEPSECS NM_016955 exon2 c.A177C p.A59A CATGATTGCAAGT . 265.0 154.0 199.0 0.0 . 55 . . Atlas-SNP KIT 3815 hgsc.bcm.edu hg19 4 55564702 55564702 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 KIT,NS,haematopoietic_neoplasm,0,1 KIT NM_000222 exon3 c.C590A p.S197X TGCTGTCGGAAAA . 75.0 34.0 100.0 0.0 . 7396 . . Atlas-SNP KDR 3791 hgsc.bcm.edu hg19 4 55973948 55973948 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KDR NM_002253 exon10 c.C1368G p.I456M CCAGTGGATGTGA . 115.0 43.0 154.0 0.0 . 307 . . Atlas-SNP AASDH 132949 hgsc.bcm.edu hg19 4 57250311 57250311 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . AASDH NM_181806 exon2 c.A155T p.H52L TCACAGTGTAACA . 235.0 92.0 253.0 0.0 . 101 . . Atlas-SNP EPHA5 2044 hgsc.bcm.edu hg19 4 66467379 66467379 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EPHA5 NM_004439 exon3 c.A890T p.E297V TTTTTCTCTTCAT . 55.0 23.0 58.0 0.0 . 315 . . Atlas-SNP EPHA5 2044 hgsc.bcm.edu hg19 4 66467935 66467935 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EPHA5 NM_004439 exon3 c.T334A p.W112R AAAGCCAGTTATT . 50.0 22.0 63.0 0.0 . 315 . . Atlas-SNP TMPRSS11A 339967 hgsc.bcm.edu hg19 4 68780363 68780363 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TMPRSS11A NM_182606 exon9 c.T1047C p.D349D TTTTATATCATTG . 235.0 30.0 251.0 0.0 . 74 . . Atlas-SNP TMPRSS11A 339967 hgsc.bcm.edu hg19 4 68795630 68795630 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TMPRSS11A NM_182606 exon5 c.T458C p.L153S ATTGGCAAGGCTC . 165.0 80.0 213.0 0.0 . 74 . . Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87732253 87732253 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PTPN13 NM_080685 exon47 c.C7369A p.Q2457K ATGGTTCAGACAG . 42.0 12.0 46.0 0.0 . 203 . . Atlas-SNP CCSER1 401145 hgsc.bcm.edu hg19 4 91229854 91229854 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_001145065 exon2 c.A419G p.E140G AAAAAGAGCACTC . 126.0 56.0 131.0 0.0 . . . . Atlas-SNP BANK1 55024 hgsc.bcm.edu hg19 4 102783820 102783820 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BANK1 NM_017935 exon4 c.A762T p.L254F AGCTTTAGGTAAG . 157.0 64.0 192.0 0.0 . 95 . . Atlas-SNP EGF 1950 hgsc.bcm.edu hg19 4 110904598 110904598 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EGF NM_001963 exon16 c.A2392G p.N798D CTAAAGAACCAAG . 111.0 56.0 121.0 0.0 . 113 . . Atlas-SNP PABPC4L 132430 hgsc.bcm.edu hg19 4 135121999 135121999 + Nonsense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PABPC4L NM_001114734 exon2 c.T350A p.L117X AGCTGCAAGAAGT . 71.0 31.0 78.0 0.0 . 60 . . Atlas-SNP MAML3 55534 hgsc.bcm.edu hg19 4 140651774 140651774 + Silent SNP G G T rs372122289 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MAML3 NM_018717 exon4 c.C2115A p.S705S CACGGAGGACTGC . 112.0 65.0 97.0 0.0 . 192 . . Atlas-SNP ZNF330 27309 hgsc.bcm.edu hg19 4 142145639 142145639 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF330 NM_014487 exon3 c.121-2A>T . TGTTACAGGAATG . 354.0 156.0 349.0 0.0 . 31 . . Atlas-SNP INPP4B 8821 hgsc.bcm.edu hg19 4 142949992 142949992 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . INPP4B NM_003866 exon27 c.G2718T p.M906I GAAAGCCATCAGC . 89.0 47.0 115.0 0.0 . 132 . . Atlas-SNP MAB21L2 10586 hgsc.bcm.edu hg19 4 151504564 151504564 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MAB21L2 NM_006439 exon1 c.T383C p.I128T GTAAGATCCGCTC . 58.0 20.0 55.0 0.0 . 53 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155156385 155156385 + Missense_Mutation SNP T T A rs147174513 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DCHS2 NM_017639 exon25 c.A8054T p.D2685V AGCTGGTCTGAGT . 101.0 44.0 94.0 0.0 . 594 . T|1.000;A|0.000 Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155226268 155226268 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DCHS2 NM_017639 exon16 c.A4011G p.Q1337Q GACTTCTTGAATT . 95.0 37.0 99.0 0.0 . 594 . . Atlas-SNP TENM3 55714 hgsc.bcm.edu hg19 4 183659668 183659668 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_001080477 exon17 c.A3350G p.D1117G CATTAGATAAACA . 86.0 41.0 88.0 0.0 . . . . Atlas-SNP TLR3 7098 hgsc.bcm.edu hg19 4 186997908 186997908 + Silent SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TLR3 NM_003265 exon2 c.A135C p.V45V TCAGGTACCCGAT . 105.0 41.0 136.0 0.0 . 83 . . Atlas-SNP SLC6A3 6531 hgsc.bcm.edu hg19 5 1409895 1409895 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLC6A3 NM_001044 exon10 c.C1339A p.L447I TGAAGAGCTCACG . 51.0 29.0 74.0 0.0 . 102 . . Atlas-SNP IRX1 79192 hgsc.bcm.edu hg19 5 3600372 3600372 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IRX1 NM_024337 exon2 c.C1310A p.P437Q CGCTCCCAGGTAC . 37.0 17.0 37.0 0.0 . 106 . . Atlas-SNP C5orf22 55322 hgsc.bcm.edu hg19 5 31534522 31534522 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C5orf22 NM_018356 exon2 c.T225C p.F75F ACTCTTTGGGTAA . 92.0 23.0 111.0 0.0 . 48 . . Atlas-SNP BRIX1 55299 hgsc.bcm.edu hg19 5 34922851 34922851 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BRIX1 NM_018321 exon6 c.G488A p.R163Q GTTCTCGGCCCCT . 381.0 136.0 419.0 0.0 . 21 . . Atlas-SNP C5orf42 65250 hgsc.bcm.edu hg19 5 37206332 37206332 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C5orf42 NM_023073 exon17 c.A3116T p.Q1039L AACAGCTGGAAAG . 306.0 30.0 343.0 0.0 . 422 . . Atlas-SNP WDR70 55100 hgsc.bcm.edu hg19 5 37721261 37721261 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . WDR70 NM_018034 exon14 c.G1461A p.M487I GATCATGGTTGGA . 153.0 63.0 176.0 0.0 . 76 . . Atlas-SNP DEPDC1B 55789 hgsc.bcm.edu hg19 5 59899225 59899225 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DEPDC1B NM_001145208 exon9 c.G1235T p.R412I TGGACTCTTCGTA . 69.0 22.0 81.0 0.0 . 56 . . Atlas-SNP CARTPT 9607 hgsc.bcm.edu hg19 5 71016426 71016426 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CARTPT NM_004291 exon3 c.T335C p.L112P CCTTCCTCCTGAA . 88.0 42.0 114.0 0.0 . 10 . . Atlas-SNP MRPS27 23107 hgsc.bcm.edu hg19 5 71519592 71519592 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MRPS27 NM_015084 exon10 c.A923T p.Q308L GACCCCTGGTTGT . 97.0 48.0 121.0 0.0 . 23 . . Atlas-SNP TNPO1 3842 hgsc.bcm.edu hg19 5 72188978 72188978 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TNPO1 NM_002270 exon16 c.G1801T p.V601F TCTTCAGTTGCCA . 104.0 45.0 80.0 0.0 . 90 . . Atlas-SNP TNPO1 3842 hgsc.bcm.edu hg19 5 72201205 72201205 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TNPO1 NM_002270 exon24 c.A2665G p.K889E CCCTTAAAAGAGC . 75.0 26.0 77.0 0.0 . 90 . . Atlas-SNP BTF3 689 hgsc.bcm.edu hg19 5 72798773 72798773 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BTF3 NM_001037637 exon4 c.C348A p.I116I AGTGATCCACTTT . 36.0 15.0 42.0 0.0 . 10 . . Atlas-SNP UTP15 84135 hgsc.bcm.edu hg19 5 72868323 72868323 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . UTP15 NM_032175 exon7 c.A683G p.Y228C GTCGTTATGTTAA . 143.0 56.0 173.0 0.0 . 30 . . Atlas-SNP ANKRD32 84250 hgsc.bcm.edu hg19 5 93989111 93989111 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ANKRD32 NM_032290 exon8 c.A1017T p.I339I GCACATATATAAT . 449.0 201.0 488.0 0.0 . 117 . . Atlas-SNP ADAMTS19 171019 hgsc.bcm.edu hg19 5 128863439 128863439 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ADAMTS19 NM_133638 exon5 c.1069-2A>T . GTTTTTAGGTATT . 247.0 104.0 315.0 1.0 . 216 . . Atlas-SNP FAM13B 51306 hgsc.bcm.edu hg19 5 137284750 137284750 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAM13B NM_001101800 exon17 c.A1988G p.K663R ATGACCTTGGGTT . 77.0 35.0 63.0 0.0 . 46 . . Atlas-SNP PCDHAC1 56135 hgsc.bcm.edu hg19 5 140308412 140308412 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PCDHAC1 NM_031882 exon1 c.A1935G p.P645P CCCACCACTTTCC . 74.0 23.0 74.0 0.0 . 141 . . Atlas-SNP PCDHB6 56130 hgsc.bcm.edu hg19 5 140531986 140531986 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PCDHB6 NM_018939 exon1 c.G2148T p.R716S GAGCAGGGCGGCC . 45.0 22.0 57.0 0.0 . 161 . . Atlas-SNP PCDHB10 56126 hgsc.bcm.edu hg19 5 140572771 140572771 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PCDHB10 NM_018930 exon1 c.G646T p.D216Y GCGCTGGATGGTG . 133.0 51.0 147.0 0.0 . 177 . . Atlas-SNP GRXCR2 643226 hgsc.bcm.edu hg19 5 145239349 145239349 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GRXCR2 NM_001080516 exon3 c.T694A p.C232S CAGGGCACCTCAG . 213.0 11.0 258.0 0.0 . 32 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150930189 150930189 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 FAT2,colon,carcinoma,0,1 FAT2 NM_001447 exon7 c.C4540T p.L1514F AGCCGAGGTCCAA . 68.0 29.0 79.0 0.0 . 465 . . Atlas-SNP GEMIN5 25929 hgsc.bcm.edu hg19 5 154311783 154311783 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GEMIN5 NM_015465 exon4 c.T537C p.I179I GATGTCAATTATC . 158.0 70.0 155.0 0.0 . 120 . . Atlas-SNP FAM71B 153745 hgsc.bcm.edu hg19 5 156590341 156590341 + Missense_Mutation SNP G G T rs200982218 by1000genomes;alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 FAM71B,NS,carcinoma,0,1 FAM71B NM_130899 exon2 c.C935A p.A312E GCCAGCGCTGTGG . 53.0 29.0 52.0 0.0 . 145 . G|1.000;A|0.000 Atlas-SNP ADRA1B 147 hgsc.bcm.edu hg19 5 159344340 159344340 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ADRA1B NM_000679 exon1 c.G428A p.R143H TCGATCGCTACAT . 56.0 25.0 60.0 0.0 . 39 . . Atlas-SNP STK10 6793 hgsc.bcm.edu hg19 5 171509351 171509351 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . STK10 NM_005990 exon12 c.G1968A p.Q656Q TTTGAGCTGCTCT . 67.0 27.0 100.0 0.0 . 100 . . Atlas-SNP HRH2 3274 hgsc.bcm.edu hg19 5 175112498 175112498 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . HRH2 NM_001131055 exon3 c.A1163T p.H388L ACATTCATCCAAT . 207.0 87.0 284.0 1.0 . 108 . . Atlas-SNP ADAMTS2 9509 hgsc.bcm.edu hg19 5 178548746 178548746 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ADAMTS2 NM_014244 exon21 c.A3094T p.I1032F CTGAGATGTTTCC . 67.0 23.0 84.0 0.0 . 190 . . Atlas-SNP TUBB2B 347733 hgsc.bcm.edu hg19 6 3227741 3227741 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TUBB2B NM_178012 exon1 c.G37T p.G13C GGTTGCCGCACTG . 37.0 11.0 21.0 0.0 . 25 . . Atlas-SNP PRPF4B 8899 hgsc.bcm.edu hg19 6 4057278 4057278 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PRPF4B NM_003913 exon13 c.A2590G p.K864E ATAGGTAAAAGCT . 122.0 25.0 64.0 0.0 . 140 . . Atlas-SNP EEF1E1 9521 hgsc.bcm.edu hg19 6 8097609 8097609 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EEF1E1 NM_001135650 exon2 c.T179C p.L60S CCCAGCAAATATT . 227.0 60.0 150.0 0.0 . 11 . . Atlas-SNP SIRT5 23408 hgsc.bcm.edu hg19 6 13588600 13588600 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SIRT5 NM_012241 exon4 c.G153A p.K51K AGCAAAGCACATA . 367.0 86.0 173.0 0.0 . 45 . . Atlas-SNP NUP153 9972 hgsc.bcm.edu hg19 6 17706588 17706588 + Missense_Mutation SNP C C A rs373196566 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NUP153 NM_005124 exon1 c.G31T p.G11C CACCGCCCCCTCC . 87.0 9.0 57.0 0.0 . 116 . . Atlas-SNP PRL 5617 hgsc.bcm.edu hg19 6 22287693 22287693 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PRL NM_000948 exon5 c.C622A p.H208N TTTTATGTGAATC . 143.0 43.0 63.0 0.0 . 41 . . Atlas-SNP HIST1H2BJ 8970 hgsc.bcm.edu hg19 6 27100194 27100194 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 HIST1H2BJ,NS,carcinoma,0,1 HIST1H2BJ NM_021058 exon1 c.G336T p.V112V CTCGGACACGGCG . 174.0 34.0 93.0 0.0 . 21 . . Atlas-SNP POM121L2 94026 hgsc.bcm.edu hg19 6 27279131 27279131 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . POM121L2 NM_033482 exon1 c.T819A p.S273R GGGAACACTTCTC . 152.0 30.0 101.0 0.0 . 61 . . Atlas-SNP ZSCAN23 222696 hgsc.bcm.edu hg19 6 28402633 28402633 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZSCAN23 NM_001012455 exon4 c.A779G p.Q260R GAATTCTGGGTGA . 275.0 66.0 148.0 0.0 . 18 . . Atlas-SNP ZNF311 282890 hgsc.bcm.edu hg19 6 28962885 28962885 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF311 NM_001010877 exon7 c.A1894G p.R632G GTTTTCTTTTCTT . 208.0 38.0 130.0 0.0 . 59 . . Atlas-SNP GABBR1 2550 hgsc.bcm.edu hg19 6 29591692 29591692 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GABBR1 NM_001470 exon7 c.C767A p.A256D CTAGCAGCCTCAG . 278.0 57.0 215.0 0.0 . 95 . . Atlas-SNP MUC21 394263 hgsc.bcm.edu hg19 6 30955854 30955854 + Silent SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MUC21 NM_001010909 exon3 c.A1584C p.P528P TGGTCCAGGCCCT . 255.0 42.0 189.0 0.0 . 98 . . Atlas-SNP C6orf47 57827 hgsc.bcm.edu hg19 6 31627616 31627616 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C6orf47 NM_021184 exon1 c.G109T p.E37X AATTCTCCGAGGA . 247.0 47.0 163.0 0.0 . 15 . . Atlas-SNP VWA7 80737 hgsc.bcm.edu hg19 6 31735467 31735467 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_025258 exon11 c.G1568T p.G523V AGCAGCCCATCCA . 190.0 42.0 108.0 0.0 . . . . Atlas-SNP SLC44A4 80736 hgsc.bcm.edu hg19 6 31839119 31839119 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 SLC44A4,NS,carcinoma,0,1 SLC44A4 NM_025257 exon9 c.T673G p.F225V GGGCAAAATCTTC . 168.0 7.0 117.0 0.0 . 67 . . Atlas-SNP GRM4 2914 hgsc.bcm.edu hg19 6 34003458 34003458 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GRM4 NM_000841 exon9 c.A2429T p.Q810L GCCGACTGCGAGG . 377.0 69.0 228.0 0.0 . 317 . . Atlas-SNP ZNF76 7629 hgsc.bcm.edu hg19 6 35260758 35260758 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF76 NM_003427 exon11 c.G1266T p.A422A GGTGGCGATGGTG . 239.0 58.0 160.0 0.0 . 37 . . Atlas-SNP BRPF3 27154 hgsc.bcm.edu hg19 6 36169160 36169160 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BRPF3 NM_015695 exon2 c.A1061C p.Q354P GTGCACAGCGGGC . 131.0 21.0 89.0 0.0 . 93 . . Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38994404 38994404 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DNAH8 NM_001206927 exon92 c.T13797A p.V4599V TGAAGTTCTGAGA . 81.0 20.0 61.0 0.0 . 1239 . . Atlas-SNP GLP1R 2740 hgsc.bcm.edu hg19 6 39040691 39040691 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GLP1R NM_002062 exon6 c.T563A p.I188N CCTTCATCCTGCG . 146.0 42.0 92.0 0.0 . 64 . . Atlas-SNP FRS3 10817 hgsc.bcm.edu hg19 6 41739273 41739273 + Splice_Site SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FRS3 NM_006653 exon8 c.565-2A>T . TGGGACTGGGGAA . 37.0 11.0 16.0 0.0 . 53 . . Atlas-SNP PTK7 5754 hgsc.bcm.edu hg19 6 43109672 43109672 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PTK7 NM_001270398 exon12 c.T1796A p.F599Y CAGTTTTTATCAC . 88.0 27.0 49.0 0.0 . 101 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43155101 43155101 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CUL9 NM_015089 exon6 c.T1505C p.L502P GGGAGCTGCTTTT . 187.0 25.0 110.0 0.0 . 248 . . Atlas-SNP TMEM151B 441151 hgsc.bcm.edu hg19 6 44243711 44243711 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TMEM151B NM_001137560 exon3 c.T1148A p.L383Q AGCAGCTGGTGCC . 59.0 18.0 36.0 0.0 . 13 . . Atlas-SNP ANKRD66 100287718 hgsc.bcm.edu hg19 6 46721651 46721651 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_001162435 exon4 c.T521A p.I174N CACAGATCTATGG . 190.0 101.0 95.0 0.0 . . . . Atlas-SNP GPR116 221395 hgsc.bcm.edu hg19 6 46826559 46826559 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 GPR116,right_lower_lobe,carcinoma,0,1 GPR116 NM_015234 exon17 c.G3081T p.L1027F GGCTGCCAAGCTC . 148.0 42.0 100.0 1.0 . 133 . . Atlas-SNP GPR110 266977 hgsc.bcm.edu hg19 6 46976727 46976727 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GPR110 NM_153840 exon11 c.A2444T p.Q815L AGATTCTGGCTGT . 457.0 122.0 275.0 0.0 . 102 . . Atlas-SNP FAM83B 222584 hgsc.bcm.edu hg19 6 54804890 54804890 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAM83B NM_001010872 exon5 c.A1121T p.Q374L TACGTCAGTTTCA . 409.0 95.0 239.0 0.0 . 186 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56328485 56328485 + Nonsense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DST NM_015548 exon81 c.C14896T p.R4966X GGGGTCGGAAAGC . 168.0 30.0 83.0 0.0 . 1427 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56497806 56497806 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DST NM_001723 exon14 c.G2040T p.Q680H AACTTGCTGATGT . 136.0 26.0 94.0 0.0 . 1427 . . Atlas-SNP KIAA1586 57691 hgsc.bcm.edu hg19 6 56917944 56917944 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KIAA1586 NM_020931 exon4 c.A647G p.H216R AAGCCCATGGTAA . 260.0 61.0 128.0 0.0 . 59 . . Atlas-SNP PHF3 23469 hgsc.bcm.edu hg19 6 64389990 64389990 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PHF3 NM_015153 exon2 c.A334T p.R112W CCTAACAGGAACT . 124.0 60.0 149.0 0.0 . 191 . . Atlas-SNP RIMS1 22999 hgsc.bcm.edu hg19 6 72892030 72892030 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RIMS1 NM_014989 exon6 c.C856G p.L286V GGAGCCCTGAAGA . 279.0 128.0 295.0 0.0 . 278 . . Atlas-SNP TTK 7272 hgsc.bcm.edu hg19 6 80746315 80746315 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TTK NM_003318 exon17 c.A2048G p.Q683R ATTCTCAGGTAAG . 104.0 39.0 87.0 0.0 . 199 . . Atlas-SNP SPACA1 81833 hgsc.bcm.edu hg19 6 88757710 88757710 + Silent SNP G G A rs376457887 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SPACA1 NM_030960 exon1 c.G87A p.G29G GCGCGGGACCAAC . 119.0 51.0 114.0 0.0 . 49 . . Atlas-SNP RTN4IP1 84816 hgsc.bcm.edu hg19 6 107076839 107076839 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RTN4IP1 NM_032730 exon1 c.T58C p.W20R TTCTCCAGAAGCA . 76.0 36.0 78.0 0.0 . 31 . . Atlas-SNP DSE 29940 hgsc.bcm.edu hg19 6 116757673 116757673 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DSE NM_001080976 exon6 c.A2042T p.Q681L ACTCTCAGCAACT . 118.0 55.0 110.0 0.0 . 98 . . Atlas-SNP MCM9 254394 hgsc.bcm.edu hg19 6 119136767 119136767 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MCM9 NM_017696 exon12 c.A2652G p.P884P TCTGTCTGGGCTA . 47.0 17.0 84.0 0.0 . 73 . . Atlas-SNP CLVS2 134829 hgsc.bcm.edu hg19 6 123319264 123319264 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CLVS2 NM_001010852 exon2 c.T342C p.Y114Y CCACTATGGCAGG . 76.0 28.0 95.0 0.0 . 79 . . Atlas-SNP ENPP3 5169 hgsc.bcm.edu hg19 6 132006562 132006562 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ENPP3 NM_005021 exon13 c.A1179T p.I393I CAGAATAAACTTC . 186.0 88.0 211.0 0.0 . 117 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152765648 152765648 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 SYNE1_ENST00000423061,NS,carcinoma,0,3 SYNE1 NM_033071 exon30 c.C3756A p.L1252L TTCTTCGAGAGAA . 60.0 33.0 101.0 0.0 . 3227 . . Atlas-SNP FNDC1 84624 hgsc.bcm.edu hg19 6 159654905 159654905 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FNDC1 NM_032532 exon11 c.G3361T p.A1121S GCAGGGGCAGGTG . 53.0 32.0 44.0 0.0 . 250 . . Atlas-SNP DACT2 168002 hgsc.bcm.edu hg19 6 168709146 168709146 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DACT2 NM_214462 exon4 c.T1291A p.C431S GGACACAGCTGTT . 123.0 55.0 112.0 0.0 . 46 . . Atlas-SNP INTS1 26173 hgsc.bcm.edu hg19 7 1513873 1513873 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . INTS1 NM_001080453 exon41 c.G5760T p.P1920P CACGTGCGGCTGC . 21.0 11.0 19.0 0.0 . 145 . . Atlas-SNP CARD11 84433 hgsc.bcm.edu hg19 7 2968233 2968233 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CARD11 NM_032415 exon13 c.A1753T p.S585C CCCACCTGCGATG . 28.0 9.0 30.0 0.0 . 339 . . Atlas-SNP GRID2IP 392862 hgsc.bcm.edu hg19 7 6550307 6550307 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GRID2IP NM_001145118 exon10 c.C1586A p.P529H ATCAGGGGAAGAG . 60.0 29.0 64.0 0.0 . 82 . . Atlas-SNP DBNL 28988 hgsc.bcm.edu hg19 7 44096470 44096470 + Missense_Mutation SNP C C A rs145524590 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DBNL NM_001122956 exon5 c.C442A p.R148S AGTGGCCGCTTCC . 90.0 13.0 81.0 0.0 . 26 . C|1.000;T|0.000 Atlas-SNP TNS3 64759 hgsc.bcm.edu hg19 7 47342734 47342734 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TNS3 NM_022748 exon22 c.A3271T p.T1091S GCAGGGTCACACC . 100.0 11.0 112.0 0.0 . 140 . . Atlas-SNP IKZF1 10320 hgsc.bcm.edu hg19 7 50467947 50467947 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IKZF1 NM_006060 exon8 c.C1182T p.C394C CAGCTGCCAAGAC . 87.0 43.0 115.0 0.0 . 613 . . Atlas-SNP ZNF479 90827 hgsc.bcm.edu hg19 7 57188114 57188114 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF479 NM_033273 exon5 c.G1008T p.W336C TGAGGACCAGCTA . 188.0 67.0 202.0 0.0 . 193 . . Atlas-SNP ZNF479 90827 hgsc.bcm.edu hg19 7 57188115 57188115 + Missense_Mutation SNP C C A rs373275999 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF479 NM_033273 exon5 c.G1007T p.W336L GAGGACCAGCTAA . 187.0 68.0 202.0 0.0 . 193 . . Atlas-SNP DTX2 113878 hgsc.bcm.edu hg19 7 76112438 76112438 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DTX2 NM_001102596 exon2 c.A882T p.P294P GCCCCCAGGATCC . 143.0 55.0 154.0 0.0 . 64 . . Atlas-SNP CACNA2D1 781 hgsc.bcm.edu hg19 7 81714106 81714106 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CACNA2D1 NM_000722 exon7 c.G637T p.G213C CTAGGCCAGTGGC . 263.0 114.0 302.0 0.0 . 191 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82467649 82467649 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PCLO NM_014510 exon15 c.A14107G p.N4703D CATAGTTAATTTG . 66.0 22.0 72.0 0.0 . 1506 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82581285 82581285 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PCLO NM_014510 exon5 c.C8984A p.S2995Y GTGTCAGACATGG . 168.0 85.0 161.0 0.0 . 1506 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82764725 82764725 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PCLO NM_014510 exon3 c.G2141T p.G714V GGAGAGCCATGAA . 151.0 71.0 167.0 0.0 . 1506 . . Atlas-SNP GRM3 2913 hgsc.bcm.edu hg19 7 86416372 86416372 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GRM3 NM_000840 exon3 c.A1264G p.M422V GATGCTATGAAGA . 89.0 9.0 135.0 0.0 . 237 . . Atlas-SNP FZD1 8321 hgsc.bcm.edu hg19 7 90895564 90895564 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FZD1 NM_003505 exon1 c.A1369G p.I457V CCGGCCATCAAGA . 56.0 20.0 57.0 0.0 . 64 . . Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94040245 94040245 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . COL1A2 NM_000089 exon22 c.T1242C p.A414A CAGAGCTGGCGTC . 66.0 25.0 113.0 0.0 . 240 . . Atlas-SNP GPR22 2845 hgsc.bcm.edu hg19 7 107114661 107114661 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GPR22 NM_005295 exon3 c.T156A p.I52I AGAAATTGTGTTG . 195.0 83.0 174.0 0.0 . 43 . . Atlas-SNP LAMB4 22798 hgsc.bcm.edu hg19 7 107706917 107706917 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LAMB4 NM_007356 exon20 c.A2575T p.S859C GGCAGCTGGGAAA . 117.0 48.0 125.0 0.0 . 253 . . Atlas-SNP NRCAM 4897 hgsc.bcm.edu hg19 7 107820770 107820770 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 NRCAM_ENST00000379028,NS,carcinoma,0,2 NRCAM NM_001037132 exon22 c.G2748A p.P916P TAGCCCCGGCAAC . 104.0 62.0 105.0 0.0 . 267 . . Atlas-SNP ASZ1 136991 hgsc.bcm.edu hg19 7 117003770 117003770 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ASZ1 NM_130768 exon13 c.T1308C p.H436H TTGTATATGAGTT . 85.0 26.0 73.0 0.0 . 56 . . Atlas-SNP CTTNBP2 83992 hgsc.bcm.edu hg19 7 117407202 117407202 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CTTNBP2 NM_033427 exon9 c.G2807T p.G936V AGCCCTCCGTGCC . 76.0 32.0 72.0 0.0 . 200 . . Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu hg19 7 121653036 121653036 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PTPRZ1 NM_002851 exon12 c.T3936A p.F1312L TGTATTTGCTACA . 146.0 57.0 157.0 0.0 . 605 . . Atlas-SNP FAM71F2 346653 hgsc.bcm.edu hg19 7 128323061 128323061 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAM71F2 NM_001012454 exon5 c.A778G p.K260E AGCTACAAGATAC . 77.0 39.0 111.0 0.0 . 19 . . Atlas-SNP CCDC136 64753 hgsc.bcm.edu hg19 7 128434789 128434789 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCDC136 NM_001201372 exon4 c.G463T p.E155X CAGGCAGAGGTGT . 222.0 83.0 314.0 1.0 . 170 . . Atlas-SNP CCDC136 64753 hgsc.bcm.edu hg19 7 128450365 128450365 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCDC136 NM_022742 exon12 c.T1973G p.L658W AAGTGTTGGAGAA . 158.0 69.0 149.0 0.0 . 170 . . Atlas-SNP ATP6V1F 9296 hgsc.bcm.edu hg19 7 128505618 128505618 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ATP6V1F NM_001198909 exon3 c.G430T p.E144X ACTGCCGAAGACC . 64.0 27.0 79.0 0.0 . 12 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 131908376 131908376 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PLXNA4 NM_020911 exon9 c.A2007G p.P669P GCGGTATGGACTC . 84.0 50.0 135.0 0.0 . 873 . . Atlas-SNP SLC37A3 84255 hgsc.bcm.edu hg19 7 140048534 140048534 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLC37A3 NM_207113 exon10 c.A916G p.N306D AGTAATTCACTAA . 90.0 44.0 120.0 0.0 . 80 . . Atlas-SNP DENND2A 27147 hgsc.bcm.edu hg19 7 140285439 140285439 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DENND2A NM_015689 exon3 c.T1195C p.L399L AATTCAAGACACA . 134.0 51.0 144.0 0.0 . 132 . . Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141755835 141755835 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MGAM NM_004668 exon29 c.C3519T p.Y1173Y CTACTACATGGGG . 54.0 19.0 70.0 0.0 . 767 . . Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141764190 141764190 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MGAM NM_004668 exon37 c.A4352G p.E1451G ATTTGGAGTCCAG . 70.0 29.0 100.0 0.0 . 767 . . Atlas-SNP EPHB6 2051 hgsc.bcm.edu hg19 7 142563375 142563375 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EPHB6 NM_004445 exon8 c.C1092T p.A364A AGAGGCCCCCTGC . 44.0 13.0 97.0 0.0 . 168 . . Atlas-SNP CLCN1 1180 hgsc.bcm.edu hg19 7 143044041 143044041 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CLCN1 NM_000083 exon20 c.A2402T p.E801V CTGAAGAGGTGAG . 64.0 30.0 118.0 0.0 . 141 . . Atlas-SNP OR2F1 26211 hgsc.bcm.edu hg19 7 143657623 143657623 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR2F1 NM_012369 exon1 c.T560A p.L187Q TCAGGCTGGCTTG . 161.0 56.0 172.0 0.0 . 71 . . Atlas-SNP OR6B1 135946 hgsc.bcm.edu hg19 7 143701238 143701238 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR6B1 NM_001005281 exon1 c.T149A p.L50Q TGGTGCTGCAAAA . 165.0 64.0 204.0 0.0 . 60 . . Atlas-SNP OR2A12 346525 hgsc.bcm.edu hg19 7 143792917 143792917 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR2A12 NM_001004135 exon1 c.C717A p.T239T CTCTACCTGCTCC . 136.0 44.0 173.0 0.0 . 56 . . Atlas-SNP ZNF786 136051 hgsc.bcm.edu hg19 7 148767562 148767562 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF786 NM_152411 exon4 c.A2302G p.K768E GCCTTTTCTTAAT . 138.0 58.0 111.0 0.0 . 69 . . Atlas-SNP FASTK 10922 hgsc.bcm.edu hg19 7 150774867 150774867 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FASTK NM_006712 exon6 c.G1040A p.G347D GGGGTGCCTGTGG . 88.0 36.0 101.0 0.0 . 29 . . Atlas-SNP AGAP3 116988 hgsc.bcm.edu hg19 7 150839513 150839513 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . AGAP3 NM_031946 exon16 c.A2065T p.S689C TGGGCCAGCCTGA . 76.0 9.0 110.0 0.0 . 121 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3889582 3889582 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CSMD1 NM_033225 exon4 c.T455A p.L152Q CCTTTCAGGATTT . 50.0 41.0 117.0 0.0 . 1469 . . Atlas-SNP AGPAT5 55326 hgsc.bcm.edu hg19 8 6612657 6612657 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . AGPAT5 NM_018361 exon7 c.G831A p.M277I ACATATGAGAAGA . 294.0 20.0 539.0 0.0 . 31 . . Atlas-SNP RP1L1 94137 hgsc.bcm.edu hg19 8 10465648 10465648 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RP1L1 NM_178857 exon4 c.A5960T p.Q1987L GCCTCCTGGGTCT . 38.0 21.0 80.0 0.0 . 453 . . Atlas-SNP ASAH1 427 hgsc.bcm.edu hg19 8 17933073 17933073 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ASAH1 NM_001127505 exon2 c.A150T p.S50S ATAGGTTGATTTT . 65.0 55.0 141.0 0.0 . 71 . . Atlas-SNP CDCA2 157313 hgsc.bcm.edu hg19 8 25319603 25319603 + Missense_Mutation SNP G G T rs149260399 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 CDCA2,NS,carcinoma,0,1 CDCA2 NM_152562 exon4 c.G266T p.R89L GTAGACGACGTTC . 53.0 40.0 120.0 1.0 . 78 . G|1.000;A|0.000 Atlas-SNP FZD3 7976 hgsc.bcm.edu hg19 8 28385435 28385435 + Silent SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FZD3 NM_017412 exon5 c.G1158C p.G386G AGTTGGGGTTTCT . 69.0 50.0 142.0 0.0 . 65 . . Atlas-SNP IKBKB 3551 hgsc.bcm.edu hg19 8 42171857 42171857 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IKBKB NM_001556 exon9 c.A710G p.Q237R TGCGGCAGAAGAG . 95.0 61.0 165.0 0.0 . 88 . . Atlas-SNP PXDNL 137902 hgsc.bcm.edu hg19 8 52320842 52320842 + Silent SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 PXDNL_ENST00000356297,right_upper_lobe,carcinoma,-2,2 PXDNL NM_144651 exon17 c.C3342G p.P1114P GTAGGAGGGTGCC . 193.0 74.0 145.0 0.0 . 414 . . Atlas-SNP PXDNL 137902 hgsc.bcm.edu hg19 8 52321428 52321428 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PXDNL NM_144651 exon17 c.T2756A p.L919H TTCAGGAGACCCC . 201.0 67.0 178.0 0.0 . 414 . . Atlas-SNP FAM150A 389658 hgsc.bcm.edu hg19 8 53451056 53451056 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAM150A NM_207413 exon4 c.T337C p.C113R TAGCACATCTTTT . 701.0 160.0 521.0 0.0 . 6 . . Atlas-SNP RGS20 8601 hgsc.bcm.edu hg19 8 54764467 54764467 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RGS20 NM_170587 exon1 c.A8T p.Q3L TGCCCCAGCTTTC . 124.0 32.0 95.0 0.0 . 51 . . Atlas-SNP PPP1R42 286187 hgsc.bcm.edu hg19 8 67930067 67930067 + Splice_Site SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PPP1R42 . . . . AACTTTCTGAAGA . 48.0 29.0 36.0 0.0 . 2 . . Atlas-SNP CSPP1 79848 hgsc.bcm.edu hg19 8 67976717 67976717 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CSPP1 NM_024790 exon1 c.A84T p.R28R GACGCGAGCCCGC . 123.0 73.0 85.0 0.0 . 129 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 68965436 68965436 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PREX2 NM_025170 exon9 c.C1048A p.H350N GAGAAGCATGAAT . 192.0 130.0 142.0 0.0 . 614 . . Atlas-SNP STMN2 11075 hgsc.bcm.edu hg19 8 80553736 80553736 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . STMN2 NM_007029 exon3 c.C239T p.S80F ACCTGTCCCTGGA . 300.0 20.0 266.0 0.0 . 23 . . Atlas-SNP ZFPM2 23414 hgsc.bcm.edu hg19 8 106813578 106813578 + Missense_Mutation SNP G G A rs377466426 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZFPM2 NM_012082 exon8 c.G1268A p.S423N CCCAGAGCCAAAA . 299.0 134.0 149.0 0.0 . 219 . . Atlas-SNP TRHR 7201 hgsc.bcm.edu hg19 8 110100121 110100121 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TRHR NM_003301 exon1 c.T380G p.I127S TAGCAATCTGTCA . 416.0 77.0 237.0 0.0 . 74 . . Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110509272 110509272 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PKHD1L1 NM_177531 exon64 c.C10452G p.C3484W GACATGCTGGGAT . 318.0 68.0 140.0 0.0 . 522 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113326785 113326785 + Nonsense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CSMD3 NM_198123 exon48 c.T7422A p.Y2474X GTCAGGATATCCA . 354.0 83.0 184.0 0.0 . 2325 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113988150 113988150 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CSMD3 NM_198123 exon7 c.G1258T p.A420S TATCTGCTGGATG . 316.0 145.0 150.0 0.0 . 2325 . . Atlas-SNP ENPP2 5168 hgsc.bcm.edu hg19 8 120628551 120628551 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ENPP2 NM_001130863 exon8 c.T731A p.L244Q CCTCGCAGATGAA . 195.0 93.0 71.0 0.0 . 254 . . Atlas-SNP GSDMC 56169 hgsc.bcm.edu hg19 8 130778031 130778031 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GSDMC NM_031415 exon4 c.T413C p.L138S GGATCCAACAGTT . 117.0 29.0 73.0 0.0 . 71 . . Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 131955635 131955635 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ADCY8 NM_001115 exon4 c.C1315T p.L439F CGTTGAGCATCCT . 175.0 77.0 116.0 0.0 . 291 . . Atlas-SNP COL22A1 169044 hgsc.bcm.edu hg19 8 139705929 139705929 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . COL22A1 NM_152888 exon35 c.A2714C p.Q905P CCTTCCTGTCCCT . 133.0 32.0 73.0 0.0 . 390 . . Atlas-SNP BAI1 575 hgsc.bcm.edu hg19 8 143558633 143558633 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BAI1 NM_001702 exon4 c.T1216G p.C406G GCCGTGTGCCCAG . 54.0 10.0 42.0 0.0 . 146 . . Atlas-SNP ARC 23237 hgsc.bcm.edu hg19 8 143694546 143694546 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ARC NM_015193 exon1 c.G1087T p.A363S GCTCGGCCGCCTG . 86.0 36.0 53.0 0.0 . 34 . . Atlas-SNP GLI4 2738 hgsc.bcm.edu hg19 8 144351615 144351615 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GLI4 NM_138465 exon2 c.G49T p.V17F TCCCCTGTCAGTC . 151.0 68.0 98.0 0.0 . 28 . . Atlas-SNP ZNF707 286075 hgsc.bcm.edu hg19 8 144776308 144776308 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF707 NM_001100598 exon6 c.A724G p.S242G GCGTTCAGCCTGA . 89.0 10.0 49.0 0.0 . 21 . . Atlas-SNP FREM1 158326 hgsc.bcm.edu hg19 9 14859459 14859459 + Missense_Mutation SNP A A C rs375644504 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FREM1 NM_144966 exon5 c.T353G p.I118R GTTTCTATGAAGG . 119.0 49.0 178.0 0.0 . 261 . . Atlas-SNP PTPLAD2 401494 hgsc.bcm.edu hg19 9 21008034 21008034 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PTPLAD2 NM_001010915 exon6 c.T602C p.M201T AGCATCATGAGAT . 98.0 43.0 98.0 0.0 . 26 . . Atlas-SNP TEK 7010 hgsc.bcm.edu hg19 9 27203079 27203079 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TEK NM_000459 exon13 c.C2171A p.A724D ACCCAGCCTTTTC . 134.0 56.0 185.0 0.0 . 250 . . Atlas-SNP TAF1L 138474 hgsc.bcm.edu hg19 9 32632432 32632432 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TAF1L NM_153809 exon1 c.G3146C p.R1049P ATTGTGCGCACCA . 217.0 81.0 215.0 0.0 . 382 . . Atlas-SNP NOL6 65083 hgsc.bcm.edu hg19 9 33469275 33469275 + Silent SNP C C G rs370042879 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NOL6 NM_022917 exon6 c.G792C p.P264P GCGGCACGGGCGG . 98.0 45.0 116.0 0.0 . 85 . . Atlas-SNP KIF24 347240 hgsc.bcm.edu hg19 9 34263160 34263160 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KIF24 NM_194313 exon9 c.G1454T p.C485F CGGATACATTCCT . 121.0 46.0 157.0 0.0 . 64 . . Atlas-SNP DCAF10 79269 hgsc.bcm.edu hg19 9 37861138 37861138 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DCAF10 NM_024345 exon7 c.G1313T p.C438F CCTAGTGTACTTG . 34.0 8.0 48.0 0.0 . 31 . . Atlas-SNP PIP5K1B 8395 hgsc.bcm.edu hg19 9 71555562 71555562 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PIP5K1B NM_003558 exon14 c.C1358A p.A453D TCCTAGCCCTGGG . 147.0 64.0 146.0 0.0 . 40 . . Atlas-SNP TMC1 117531 hgsc.bcm.edu hg19 9 75404071 75404071 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TMC1 NM_138691 exon15 c.A1062T p.V354V CCAAGTAGAAGAA . 139.0 8.0 130.0 0.0 . 87 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79325463 79325463 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 PRUNE2_ENST00000376718,NS,carcinoma,0,1 PRUNE2 NM_015225 exon8 c.G1727T p.S576I CTGGGACTGTCTT . 74.0 27.0 83.0 0.0 . 331 . . Atlas-SNP FOXB2 442425 hgsc.bcm.edu hg19 9 79635447 79635447 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FOXB2 NM_001013735 exon1 c.T877A p.S293T TTGGCGTCCGTCA . 40.0 20.0 43.0 0.0 . 71 . . Atlas-SNP AGTPBP1 23287 hgsc.bcm.edu hg19 9 88292376 88292376 + Silent SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . AGTPBP1 NM_015239 exon6 c.T411G p.S137S AAGAATAGAATGA . 122.0 6.0 110.0 0.0 . 128 . . Atlas-SNP ZCCHC6 79670 hgsc.bcm.edu hg19 9 88961390 88961390 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZCCHC6 NM_024617 exon3 c.A526G p.K176E GCTTCTTGTTTTC . 90.0 28.0 118.0 0.0 . 105 . . Atlas-SNP SYK 6850 hgsc.bcm.edu hg19 9 93650165 93650165 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SYK NM_003177 exon12 c.A1716G p.P572P GAAGCCATATCGA . 97.0 40.0 111.0 0.0 . 132 . . Atlas-SNP ROR2 4920 hgsc.bcm.edu hg19 9 94486208 94486208 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ROR2 NM_004560 exon9 c.C2568A p.V856V CTTGGGGACCATC . 39.0 16.0 73.0 0.0 . 167 . . Atlas-SNP BICD2 23299 hgsc.bcm.edu hg19 9 95477644 95477644 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BICD2 NM_001003800 exon7 c.A2360T p.Q787L TTCTGCTGGATGG . 81.0 35.0 85.0 0.0 . 68 . . Atlas-SNP SVEP1 79987 hgsc.bcm.edu hg19 9 113168473 113168473 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SVEP1 NM_153366 exon38 c.A9407T p.E3136V TGTGCCTCTCCAG . 153.0 62.0 145.0 0.0 . 326 . . Atlas-SNP SVEP1 79987 hgsc.bcm.edu hg19 9 113341549 113341549 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SVEP1 NM_153366 exon1 c.C275T p.S92F ACGCTGGACGAAT . 51.0 21.0 60.0 0.0 . 326 . . Atlas-SNP ZNF483 158399 hgsc.bcm.edu hg19 9 114289679 114289679 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF483 NM_133464 exon2 c.C4A p.Q2K ACAATGCAAGCTG . 117.0 9.0 104.0 0.0 . 78 . . Atlas-SNP OLFML2A 169611 hgsc.bcm.edu hg19 9 127549471 127549471 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OLFML2A NM_182487 exon2 c.A308G p.E103G AGAACGAGTGGAA . 70.0 35.0 76.0 0.0 . 61 . . Atlas-SNP LMX1B 4010 hgsc.bcm.edu hg19 9 129455877 129455877 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LMX1B NM_001174146 exon5 c.A816T p.A272A AAGAGCAAAGGTA . 88.0 37.0 145.0 0.0 . 86 . . Atlas-SNP FAM129B 64855 hgsc.bcm.edu hg19 9 130279260 130279260 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAM129B NM_022833 exon8 c.C849A p.A283A CGCCTTGGCCTGC . 57.0 21.0 81.0 0.0 . 84 . . Atlas-SNP RAPGEF1 2889 hgsc.bcm.edu hg19 9 134526250 134526250 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RAPGEF1 NM_198679 exon2 c.A151G p.K51E TTCCCTTCTTTGA . 169.0 68.0 172.0 0.0 . 126 . . Atlas-SNP GBGT1 26301 hgsc.bcm.edu hg19 9 136029632 136029632 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GBGT1 NM_021996 exon7 c.C376G p.Q126E AGGACTGGATGAA . 33.0 11.0 37.0 0.0 . 25 . . Atlas-SNP SOHLH1 402381 hgsc.bcm.edu hg19 9 138589403 138589403 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SOHLH1 NM_001012415 exon4 c.A416T p.Q139L TGAATCTGACTCG . 67.0 30.0 98.0 0.0 . 70 . . Atlas-SNP FAM208B 54906 hgsc.bcm.edu hg19 10 5789185 5789185 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_017782 exon15 c.G3801T p.V1267V GTCTGTGAGTAGA . 132.0 13.0 90.0 0.0 . . . . Atlas-SNP CELF2 10659 hgsc.bcm.edu hg19 10 11207586 11207586 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CELF2 NM_006561 exon2 c.G212A p.G71E CTTACGGAGCCGT . 115.0 69.0 91.0 0.0 . 78 . . Atlas-SNP PTER 9317 hgsc.bcm.edu hg19 10 16553155 16553155 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PTER NM_030664 exon6 c.T950C p.L317P ATATACTCACCAA . 156.0 31.0 123.0 0.0 . 40 . . Atlas-SNP NEBL 10529 hgsc.bcm.edu hg19 10 21178773 21178773 + Splice_Site SNP C C A rs139581346 byfrequency;alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NEBL NM_006393 exon4 c.258+1G>T . ACCTTACCTCAGA . 299.0 170.0 208.0 0.0 . 199 . C|0.999;T|0.001 Atlas-SNP KIAA1217 56243 hgsc.bcm.edu hg19 10 24833078 24833078 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KIAA1217 NM_019590 exon19 c.A4879T p.R1627W ATCGCTAGGTCTC . 119.0 64.0 84.0 0.0 . 235 . . Atlas-SNP PRTFDC1 56952 hgsc.bcm.edu hg19 10 25145922 25145922 + Missense_Mutation SNP A A T rs148662493 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PRTFDC1 NM_020200 exon6 c.T426A p.D142E GACAACATCCTTT . 164.0 12.0 136.0 0.0 . 29 . A|1.000;T|0.000 Atlas-SNP PRTFDC1 56952 hgsc.bcm.edu hg19 10 25226147 25226147 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PRTFDC1 NM_020200 exon3 c.T305C p.M102T ACCTTCATTGAGA . 86.0 22.0 79.0 0.0 . 29 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26377316 26377316 + Missense_Mutation SNP G G T rs200209381 by1000genomes;alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 MYO3A,bladder,carcinoma,0,1 MYO3A NM_017433 exon15 c.G1544T p.R515L AATCCCGAGTTAT . 166.0 42.0 106.0 0.0 . 371 . G|1.000;A|0.000 Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26465717 26465717 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MYO3A NM_017433 exon31 c.G4381T p.G1461C TATCTGGGTGTCT . 98.0 5.0 87.0 0.0 . 371 . . Atlas-SNP PARD3 56288 hgsc.bcm.edu hg19 10 34759158 34759158 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PARD3 NM_001184788 exon4 c.C437T p.P146L AGAGCTGGGTCAC . 130.0 34.0 117.0 0.0 . 131 . . Atlas-SNP WDFY4 57705 hgsc.bcm.edu hg19 10 49982657 49982657 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . WDFY4 NM_020945 exon14 c.C2708A p.S903X TCCACTCACGCCT . 137.0 43.0 87.0 0.0 . 205 . . Atlas-SNP MBL2 4153 hgsc.bcm.edu hg19 10 54528161 54528161 + Silent SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MBL2 NM_000242 exon4 c.T483G p.S161S GGCCACAGAGGCC . 153.0 46.0 144.0 0.0 . 55 . . Atlas-SNP SLC16A9 220963 hgsc.bcm.edu hg19 10 61443920 61443920 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLC16A9 NM_194298 exon2 c.T130C p.F44L CACCAAAGGCATC . 243.0 12.0 213.0 0.0 . 58 . . Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61829030 61829030 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ANK3 NM_020987 exon37 c.C11609A p.T3870N GGTGAAGTGGCCT . 354.0 202.0 252.0 0.0 . 703 . . Atlas-SNP RUFY2 55680 hgsc.bcm.edu hg19 10 70141014 70141014 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RUFY2 NM_017987 exon11 c.A1187T p.N396I TCTATGTTAATTG . 116.0 37.0 81.0 0.0 . 58 . . Atlas-SNP SAR1A 56681 hgsc.bcm.edu hg19 10 71917592 71917592 + Silent SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SAR1A NM_020150 exon5 c.A276C p.A92A ATTAATTGCTGGG . 127.0 43.0 92.0 0.0 . 19 . . Atlas-SNP PSAP 5660 hgsc.bcm.edu hg19 10 73591653 73591653 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PSAP NM_001042466 exon3 c.A199G p.K67E CGTCTTTGCATAT . 116.0 19.0 85.0 0.0 . 43 . . Atlas-SNP SEC24C 9632 hgsc.bcm.edu hg19 10 75525661 75525661 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SEC24C NM_198597 exon10 c.A1470T p.V490V CACTGTAGATTAC . 108.0 34.0 123.0 0.0 . 86 . . Atlas-SNP SFTPA1 653509 hgsc.bcm.edu hg19 10 81371581 81371581 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SFTPA1 NM_001093770 exon3 c.C45A p.A15A CAGAGCCATGTGG . 421.0 152.0 332.0 1.0 . 23 . . Atlas-SNP LDB3 11155 hgsc.bcm.edu hg19 10 88441277 88441277 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LDB3 NM_007078 exon4 c.C406A p.P136T GGCACCCCGGAGC . 63.0 19.0 35.0 0.0 . 164 . . Atlas-SNP SUFU 51684 hgsc.bcm.edu hg19 10 104268957 104268957 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SUFU NM_001178133 exon2 c.A214T p.S72C TATGTTAGCATGT . 130.0 89.0 150.0 0.0 . 44 . . Atlas-SNP KCNK18 338567 hgsc.bcm.edu hg19 10 118969679 118969679 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KCNK18 NM_181840 exon3 c.A1024G p.I342V TTCTCCATTTATA . 132.0 36.0 107.0 0.0 . 70 . . Atlas-SNP GPR123 84435 hgsc.bcm.edu hg19 10 134910562 134910562 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 GPR123,NS,carcinoma,0,1 GPR123 NM_001083909 exon3 c.C88A p.L30I ATGCTGCTCTGCC . 54.0 32.0 44.0 0.0 . 118 . . Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1031239 1031239 + Nonsense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MUC6 NM_005961 exon5 c.C504G p.Y168X ACCCATGTACTTC . 124.0 51.0 121.0 0.0 . 408 . . Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1087958 1087958 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MUC2 NM_002457 exon25 c.T3433C p.C1145R GAGACCTGCAGGA . 61.0 25.0 94.0 0.0 . 614 . . Atlas-SNP KRTAP5-3 387266 hgsc.bcm.edu hg19 11 1629498 1629498 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KRTAP5-3 NM_001012708 exon1 c.T118A p.C40S AGCAGCAGACAGG . 93.0 39.0 126.0 0.0 . 33 . . Atlas-SNP OR56A5 390084 hgsc.bcm.edu hg19 11 5988980 5988980 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_001146033 exon1 c.A745T p.I249F TGAGGATGAAGTG . 157.0 63.0 195.0 0.0 . . . . Atlas-SNP CCKBR 887 hgsc.bcm.edu hg19 11 6292239 6292239 + Splice_Site SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCKBR NM_176875 exon5 c.812-2A>G . GTGCTCAGGGGCT . 40.0 25.0 50.0 0.0 . 232 . . Atlas-SNP OR2AG1 144125 hgsc.bcm.edu hg19 11 6806883 6806883 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR2AG1 NM_001004489 exon1 c.C615T p.T205T TGTGACCTTCCTG . 104.0 43.0 83.0 0.0 . 57 . . Atlas-SNP OR10A5 144124 hgsc.bcm.edu hg19 11 6867208 6867208 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR10A5 NM_178168 exon1 c.G295T p.A99S GGCTGTGCCACTC . 222.0 92.0 237.0 0.0 . 48 . . Atlas-SNP NLRP10 338322 hgsc.bcm.edu hg19 11 7981937 7981937 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NLRP10 NM_176821 exon2 c.A1222T p.R408W GGACCCTGTGCCG . 57.0 23.0 57.0 0.0 . 146 . . Atlas-SNP ZNF143 7702 hgsc.bcm.edu hg19 11 9499989 9499989 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF143 NM_003442 exon6 c.A426T p.T142T TACCACAGCTTAT . 75.0 22.0 98.0 0.0 . 38 . . Atlas-SNP ZDHHC13 54503 hgsc.bcm.edu hg19 11 19170802 19170802 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZDHHC13 NM_019028 exon5 c.A443C p.E148A ATGGAGAGGGATT . 134.0 51.0 135.0 0.0 . 40 . . Atlas-SNP SLC6A5 9152 hgsc.bcm.edu hg19 11 20652295 20652295 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLC6A5 NM_004211 exon10 c.A1558C p.I520L TTCGTCATCTTCT . 134.0 52.0 151.0 0.0 . 151 . . Atlas-SNP HIPK3 10114 hgsc.bcm.edu hg19 11 33358716 33358716 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . HIPK3 NM_001048200 exon4 c.G1317T p.M439I AGATATGTCTCAT . 60.0 27.0 91.0 0.0 . 92 . . Atlas-SNP KIAA1549L 25758 hgsc.bcm.edu hg19 11 33628353 33628353 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_012194 exon13 c.A4155T p.A1385A ATCGGCAGTCCTC . 118.0 47.0 119.0 0.0 . . . . Atlas-SNP ELF5 2001 hgsc.bcm.edu hg19 11 34515128 34515128 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ELF5 NM_198381 exon3 c.A283T p.S95C GGCCACTGATGTT . 95.0 45.0 117.0 0.0 . 21 . . Atlas-SNP OR8H2 390151 hgsc.bcm.edu hg19 11 55873220 55873220 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 OR8H2,NS,carcinoma,0,1 OR8H2 NM_001005200 exon1 c.G702T p.K234N AGGAAAGCAGAAA . 182.0 73.0 157.0 1.0 . 117 . . Atlas-SNP OR8J3 81168 hgsc.bcm.edu hg19 11 55904587 55904587 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR8J3 NM_001004064 exon1 c.C608A p.A203E GTTGCTGCAGATA . 76.0 33.0 53.0 0.0 . 112 . . Atlas-SNP OR8K1 390157 hgsc.bcm.edu hg19 11 56113774 56113774 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR8K1 NM_001002907 exon1 c.T260A p.M87K CGAAGATGTTAGT . 149.0 53.0 145.0 0.0 . 93 . . Atlas-SNP RAB3IL1 5866 hgsc.bcm.edu hg19 11 61675695 61675695 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RAB3IL1 NM_001271686 exon2 c.A236G p.H79R TCCCTGTGGCCTT . 19.0 14.0 47.0 0.0 . 39 . . Atlas-SNP SLC22A24 283238 hgsc.bcm.edu hg19 11 62886696 62886696 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLC22A24 NM_001136506 exon3 c.A618T p.A206A GAACCCTGCCAAG . 213.0 76.0 205.0 0.0 . 31 . . Atlas-SNP PYGM 5837 hgsc.bcm.edu hg19 11 64527129 64527129 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PYGM NM_001164716 exon1 c.A242G p.K81R AGCACCTTGGGGT . 26.0 20.0 51.0 0.0 . 77 . . Atlas-SNP MEN1 4221 hgsc.bcm.edu hg19 11 64575092 64575092 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MEN1 NM_130800 exon4 c.A730G p.M244V ACACCATGAACGC . 42.0 31.0 99.0 0.0 . 442 . . Atlas-SNP KLC2 64837 hgsc.bcm.edu hg19 11 66029592 66029592 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KLC2 NM_001134775 exon4 c.460-2A>T . CTTCCCAGGAGGA . 109.0 45.0 115.0 0.0 . 50 . . Atlas-SNP ADRBK1 156 hgsc.bcm.edu hg19 11 67047308 67047308 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ADRBK1 NM_001619 exon6 c.442-2A>T . TCCCTTAGCCATA . 176.0 80.0 94.0 0.0 . 51 . . Atlas-SNP P2RY6 5031 hgsc.bcm.edu hg19 11 73007940 73007940 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . P2RY6 NM_176796 exon4 c.T377A p.L126Q GCTACCTGGGCAT . 38.0 8.0 25.0 0.0 . 45 . . Atlas-SNP PRKRIR 5612 hgsc.bcm.edu hg19 11 76063253 76063253 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PRKRIR NM_004705 exon5 c.T941A p.I314K TCAGTTATCATAG . 387.0 135.0 401.0 1.0 . 65 . . Atlas-SNP THRSP 7069 hgsc.bcm.edu hg19 11 77775013 77775013 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . THRSP NM_003251 exon1 c.A86G p.Q29R TGGAGCAGGTGGT . 70.0 32.0 63.0 0.0 . 18 . . Atlas-SNP GRM5 2915 hgsc.bcm.edu hg19 11 88338049 88338049 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GRM5 NM_000842 exon5 c.C1231A p.L411I TGTGGAGCCCATA . 117.0 52.0 140.0 0.0 . 414 . . Atlas-SNP TYR 7299 hgsc.bcm.edu hg19 11 88911129 88911129 + Missense_Mutation SNP T T A rs375229194 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TYR NM_000372 exon1 c.T8A p.L3Q TGCTCCTGGCTGT . 57.0 28.0 103.0 0.0 . 130 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92498202 92498202 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAT3 NM_001008781 exon5 c.T4142C p.V1381A AAATTGTAGGGGT . 115.0 46.0 143.0 0.0 . 1822 . . Atlas-SNP TRPC6 7225 hgsc.bcm.edu hg19 11 101375282 101375282 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TRPC6 NM_004621 exon2 c.G418T p.A140S CCACTGCCAACTG . 97.0 40.0 120.0 0.0 . 132 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103026215 103026215 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DYNC2H1 NM_001377 exon25 c.A3729T p.K1243N AGCCAAAGCTGCC . 125.0 49.0 139.0 0.0 . 246 . . Atlas-SNP ELMOD1 55531 hgsc.bcm.edu hg19 11 107526788 107526788 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ELMOD1 NM_018712 exon11 c.A828G p.T276T GCAAACATTCTGT . 59.0 30.0 84.0 0.0 . 40 . . Atlas-SNP DDX10 1662 hgsc.bcm.edu hg19 11 108709284 108709284 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DDX10 NM_004398 exon14 c.G2077A p.E693K ACTGATGAAGGGG . 186.0 62.0 236.0 0.0 . 70 . . Atlas-SNP RNF214 257160 hgsc.bcm.edu hg19 11 117109396 117109396 + Nonsense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RNF214 NM_207343 exon3 c.A187T p.R63X AATAACAGAAATG . 137.0 58.0 150.0 0.0 . 54 . . Atlas-SNP OR8G2 26492 hgsc.bcm.edu hg19 11 124095466 124095466 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_001007249 exon1 c.T69A p.T23T AGTGACTGAGTTC . 127.0 54.0 168.0 0.0 . . . . Atlas-SNP CDON 50937 hgsc.bcm.edu hg19 11 125891234 125891234 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CDON NM_016952 exon3 c.T258C p.S86S GTTGAGAGAAAGA . 58.0 17.0 82.0 0.0 . 137 . . Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133807314 133807314 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IGSF9B NM_014987 exon5 c.C636T p.S212S CTGAATGCTGTAC . 83.0 28.0 104.0 0.0 . 290 . . Atlas-SNP B4GALNT3 283358 hgsc.bcm.edu hg19 12 666812 666812 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . B4GALNT3 NM_173593 exon16 c.G2419T p.D807Y ATCAAAGACATGG . 147.0 54.0 165.0 0.0 . 64 . . Atlas-SNP ENO2 2026 hgsc.bcm.edu hg19 12 7026812 7026812 + Silent SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ENO2 NM_001975 exon6 c.G378C p.R126R TGAGCGGGAACTG . 42.0 16.0 50.0 0.0 . 20 . . Atlas-SNP A2ML1 144568 hgsc.bcm.edu hg19 12 8990976 8990976 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 A2ML1,caecum,carcinoma,0,1 A2ML1 NM_144670 exon9 c.C900T p.T300T GGCCACCTTTGAC . 111.0 50.0 197.0 1.0 . 199 . . Atlas-SNP PHC1 1911 hgsc.bcm.edu hg19 12 9083485 9083485 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PHC1 NM_004426 exon7 c.C1067A p.T356K CACGGACAGCCAC . 121.0 36.0 79.0 0.0 . 67 . . Atlas-SNP CD69 969 hgsc.bcm.edu hg19 12 9907785 9907785 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CD69 NM_001781 exon3 c.A260G p.E87G CAGTCCTCAGAGC . 103.0 42.0 131.0 0.0 . 23 . . Atlas-SNP CLEC1B 51266 hgsc.bcm.edu hg19 12 10147839 10147839 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CLEC1B NM_016509 exon5 c.A445T p.I149F CTTTGATGTACTC . 40.0 13.0 55.0 0.0 . 39 . . Atlas-SNP PRB2 653247 hgsc.bcm.edu hg19 12 11546400 11546400 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PRB2 NM_006248 exon3 c.A612T p.P204P TGGGGGTGGTCCT . 322.0 46.0 369.0 0.0 . 168 . . Atlas-SNP CASC1 55259 hgsc.bcm.edu hg19 12 25267703 25267703 + Nonsense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CASC1 NM_001082972 exon13 c.C1672T p.Q558X CATCTTGAATCAA . 113.0 45.0 165.0 0.0 . 146 . . Atlas-SNP RASSF8 11228 hgsc.bcm.edu hg19 12 26217535 26217535 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RASSF8 NM_007211 exon4 c.G208T p.A70S CAGTATGCTAGTG . 100.0 42.0 119.0 0.0 . 56 . . Atlas-SNP PPFIBP1 8496 hgsc.bcm.edu hg19 12 27832961 27832961 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PPFIBP1 NM_177444 exon20 c.T1880A p.L627X CCCGATTAGGTTG . 74.0 39.0 90.0 0.0 . 153 . . Atlas-SNP KIAA1551 55196 hgsc.bcm.edu hg19 12 32137297 32137297 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_018169 exon4 c.A3408G p.K1136K TCAGAAAGAAGAG . 90.0 35.0 101.0 0.0 . . . . Atlas-SNP BICD1 636 hgsc.bcm.edu hg19 12 32369200 32369200 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BICD1 NM_001714 exon2 c.C233G p.S78C CCTTCTCCATCCA . 150.0 58.0 163.0 0.0 . 89 . . Atlas-SNP BICD1 636 hgsc.bcm.edu hg19 12 32490444 32490444 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BICD1 NM_001714 exon7 c.A2264G p.Y755C ATGAATATGTCAC . 114.0 50.0 130.0 0.0 . 89 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49432023 49432023 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MLL2 NM_003482 exon34 c.A9116G p.D3039G AGGTCATCCAAGT . 138.0 59.0 143.0 0.0 . 1173 . . Atlas-SNP FAM186A 121006 hgsc.bcm.edu hg19 12 50749396 50749396 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAM186A NM_001145475 exon4 c.T1219C p.Y407H CTGTATATGAAAT . 69.0 33.0 75.0 0.0 . 181 . . Atlas-SNP KRT5 3852 hgsc.bcm.edu hg19 12 52913903 52913903 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KRT5 NM_000424 exon1 c.T178A p.Y60N TGCCATAGCCACC . 68.0 26.0 81.0 0.0 . 88 . . Atlas-SNP MAP3K12 7786 hgsc.bcm.edu hg19 12 53878895 53878895 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MAP3K12 NM_001193511 exon6 c.C1084T p.L362L CGGGCAGATGGAG . 123.0 52.0 126.0 0.0 . 160 . . Atlas-SNP NABP2 79035 hgsc.bcm.edu hg19 12 56619991 56619991 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_024068 exon5 c.A319G p.N107D GTTCCTAACTTCA . 165.0 65.0 188.0 0.0 . . . . Atlas-SNP ZBTB39 9880 hgsc.bcm.edu hg19 12 57397645 57397645 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZBTB39 NM_014830 exon2 c.G1057C p.E353Q TGGGCTCTAGAAC . 117.0 48.0 128.0 0.0 . 58 . . Atlas-SNP IRAK3 11213 hgsc.bcm.edu hg19 12 66638446 66638446 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IRAK3 NM_007199 exon9 c.T1068A p.D356E AACAGATGTCTAC . 101.0 35.0 117.0 0.0 . 75 . . Atlas-SNP TPH2 121278 hgsc.bcm.edu hg19 12 72425319 72425319 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TPH2 NM_173353 exon11 c.T1317C p.I439I GTCAATTACCCGT . 141.0 60.0 156.0 0.0 . 81 . . Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78513452 78513452 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NAV3 NM_014903 exon15 c.C3476G p.T1159S CCAGTACCAGCAG . 132.0 56.0 169.0 0.0 . 506 . . Atlas-SNP OTOGL 283310 hgsc.bcm.edu hg19 12 80750668 80750668 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OTOGL NM_173591 exon48 c.A5966T p.E1989V AGGAAGAACCTTG . 269.0 120.0 247.0 1.0 . 235 . . Atlas-SNP PPFIA2 8499 hgsc.bcm.edu hg19 12 82147865 82147865 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PPFIA2 NM_001220476 exon2 c.C136G p.L46V TGTCTAGAAGACG . 120.0 49.0 138.0 0.0 . 207 . . Atlas-SNP LRRIQ1 84125 hgsc.bcm.edu hg19 12 85518207 85518207 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LRRIQ1 NM_001079910 exon17 c.G3917T p.S1306I CAAGCAGTATTCC . 76.0 32.0 70.0 0.0 . 512 . . Atlas-SNP KITLG 4254 hgsc.bcm.edu hg19 12 88910260 88910260 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KITLG NM_003994 exon5 c.A371G p.K124R GATTTTTTTAGAT . 44.0 22.0 69.0 0.0 . 26 . . Atlas-SNP DCN 1634 hgsc.bcm.edu hg19 12 91546950 91546950 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DCN NM_001920 exon6 c.T669A p.L223L TTCCGTAAGGGAA . 82.0 37.0 100.0 0.0 . 61 . . Atlas-SNP IFT81 28981 hgsc.bcm.edu hg19 12 110565247 110565247 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IFT81 NM_014055 exon2 c.A62G p.Y21C AGAACTATAATTT . 249.0 83.0 249.0 0.0 . 86 . . Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112688787 112688787 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_001109662 exon24 c.A3302T p.K1101I AAAAGTTTGGACC . 127.0 58.0 158.0 0.0 . . . . Atlas-SNP MED13L 23389 hgsc.bcm.edu hg19 12 116446847 116446847 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MED13L NM_015335 exon10 c.A1371G p.S457S TAAAGATGAAGAT . 123.0 41.0 123.0 0.0 . 193 . . Atlas-SNP SRRM4 84530 hgsc.bcm.edu hg19 12 119554788 119554788 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SRRM4 NM_194286 exon4 c.A412T p.S138C AAGAAAAGTTCCA . 60.0 25.0 70.0 0.0 . 131 . . Atlas-SNP CIT 11113 hgsc.bcm.edu hg19 12 120271925 120271925 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CIT NM_001206999 exon6 c.T624A p.A208A GTGAACAGCCAAA . 122.0 45.0 147.0 0.0 . 535 . . Atlas-SNP WDR66 144406 hgsc.bcm.edu hg19 12 122413230 122413230 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . WDR66 NM_144668 exon18 c.A2852G p.K951R AAGGAAAATTCTA . 156.0 55.0 200.0 0.0 . 143 . . Atlas-SNP TMEM132B 114795 hgsc.bcm.edu hg19 12 126138603 126138603 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TMEM132B NM_052907 exon9 c.A2584G p.K862E TTACTCAAAAGTG . 91.0 44.0 132.0 0.0 . 207 . . Atlas-SNP GPR133 283383 hgsc.bcm.edu hg19 12 131456098 131456098 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GPR133 NM_198827 exon4 c.A283G p.S95G TGCATCAGCAAGC . 77.0 34.0 85.0 0.0 . 136 . . Atlas-SNP ULK1 8408 hgsc.bcm.edu hg19 12 132393332 132393332 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ULK1 NM_003565 exon6 c.G460T p.A154S CGCCGCGCCAACC . 37.0 19.0 44.0 0.0 . 92 . . Atlas-SNP PUS1 80324 hgsc.bcm.edu hg19 12 132423731 132423731 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PUS1 NM_025215 exon4 c.C455A p.A152D CCGCAGCCGGCCA . 88.0 42.0 100.0 0.0 . 47 . . Atlas-SNP MTUS2 23281 hgsc.bcm.edu hg19 13 30066785 30066785 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MTUS2 NM_001033602 exon10 c.T3538C p.L1180L CCAGAATTGATGT . 98.0 35.0 99.0 0.0 . 279 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35729982 35729982 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NBEA NM_015678 exon19 c.T2517A p.I839I GAAAATTCAGAAT . 90.0 18.0 62.0 0.0 . 340 . . Atlas-SNP MAB21L1 4081 hgsc.bcm.edu hg19 13 36049699 36049699 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MAB21L1 NM_005584 exon1 c.C577A p.P193T GCCAGGGGATGTG . 34.0 12.0 55.0 0.0 . 52 . . Atlas-SNP SLITRK6 84189 hgsc.bcm.edu hg19 13 86368800 86368800 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLITRK6 NM_032229 exon2 c.T1844G p.L615R ATAATCAGAAGTC . 173.0 69.0 194.0 0.0 . 150 . . Atlas-SNP ABCC4 10257 hgsc.bcm.edu hg19 13 95858957 95858957 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ABCC4 NM_005845 exon8 c.C990A p.I330I CACGATGATTTTG . 120.0 58.0 168.0 0.0 . 248 . . Atlas-SNP DZIP1 22873 hgsc.bcm.edu hg19 13 96237036 96237036 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DZIP1 NM_198968 exon22 c.G2478T p.V826V ATTTAGCACATGA . 123.0 50.0 181.0 0.0 . 195 . . Atlas-SNP EFNB2 1948 hgsc.bcm.edu hg19 13 107145427 107145427 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 EFNB2,NS,carcinoma,0,1 EFNB2 NM_004093 exon5 c.G963A p.M321I CGGGGGCATCTCC . 32.0 9.0 32.0 0.0 . 39 . . Atlas-SNP ARHGEF7 8874 hgsc.bcm.edu hg19 13 111938504 111938504 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ARHGEF7 NM_001113511 exon18 c.A2024G p.K675R TTAGTAAGAGCCC . 78.0 8.0 80.0 0.0 . 157 . . Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23865974 23865974 + Silent SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MYH6 NM_002471 exon19 c.A2221C p.R741R CCTTCCTGCTATC . 110.0 40.0 124.0 0.0 . 274 . . Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23901694 23901694 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 MYH7,NS,carcinoma,0,1 MYH7 NM_000257 exon6 c.T524G p.L175R GTGATCAGGATGG . 121.0 52.0 148.0 2.0 . 349 . . Atlas-SNP RIPK3 11035 hgsc.bcm.edu hg19 14 24806550 24806550 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RIPK3 NM_006871 exon8 c.T1017A p.S339S ATTACGAGAGTGC . 28.0 13.0 52.0 0.0 . 43 . . Atlas-SNP HECTD1 25831 hgsc.bcm.edu hg19 14 31641123 31641123 + Nonsense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . HECTD1 NM_015382 exon8 c.C1276T p.Q426X ACCTTTGACCTCT . 312.0 121.0 352.0 1.0 . 159 . . Atlas-SNP NPAS3 64067 hgsc.bcm.edu hg19 14 34269082 34269082 + Silent SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NPAS3 NM_001164749 exon12 c.G1569C p.P523P TAACCCGGACAGC . 121.0 54.0 152.0 0.0 . 266 . . Atlas-SNP CLEC14A 161198 hgsc.bcm.edu hg19 14 38724410 38724410 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CLEC14A NM_175060 exon1 c.G818A p.C273Y GTAGCACATTCGC . 59.0 30.0 77.0 0.0 . 83 . . Atlas-SNP LRFN5 145581 hgsc.bcm.edu hg19 14 42356398 42356398 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LRFN5 NM_152447 exon3 c.C570A p.T190T GGGGACCTTCTCC . 91.0 38.0 86.0 0.0 . 269 . . Atlas-SNP DLGAP5 9787 hgsc.bcm.edu hg19 14 55629758 55629758 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DLGAP5 NM_014750 exon13 c.C1584G p.I528M AAGTTTGATCAGA . 47.0 14.0 72.0 0.0 . 84 . . Atlas-SNP ZFP36L1 677 hgsc.bcm.edu hg19 14 69256435 69256435 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZFP36L1 NM_001244701 exon3 c.C1039A p.L347I GGAAGAGGAAGGT . 63.0 34.0 96.0 0.0 . 47 . . Atlas-SNP VRTN 55237 hgsc.bcm.edu hg19 14 74825421 74825421 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . VRTN NM_018228 exon2 c.G1935T p.M645I GGACATGATCGCT . 126.0 49.0 125.0 0.0 . 79 . . Atlas-SNP SAMD15 161394 hgsc.bcm.edu hg19 14 77843998 77843998 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SAMD15 NM_001010860 exon1 c.T237A p.P79P GAAACCTGGCGGG . 127.0 53.0 129.0 0.0 . 60 . . Atlas-SNP CATSPERB 79820 hgsc.bcm.edu hg19 14 92126218 92126218 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CATSPERB NM_024764 exon15 c.T1395C p.F465F AGAAACAAAAGTA . 34.0 13.0 52.0 0.0 . 114 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94046694 94046694 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . UNC79 NM_020818 exon19 c.T2102A p.L701Q AGAGACTAGCTCC . 104.0 53.0 102.0 0.0 . 366 . . Atlas-SNP DICER1 23405 hgsc.bcm.edu hg19 14 95560494 95560494 + Splice_Site SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DICER1 NM_177438 exon25 c.5096-1G>T . AACAATCTGAGGG . 47.0 17.0 60.0 0.0 . 181 . . Atlas-SNP BDKRB2 624 hgsc.bcm.edu hg19 14 96707662 96707662 + Missense_Mutation SNP G G T rs201791629 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BDKRB2 NM_000623 exon3 c.G997T p.V333L GTGTACGTGATCG . 99.0 44.0 117.0 0.0 . 56 . . Atlas-SNP SETD3 84193 hgsc.bcm.edu hg19 14 99865385 99865385 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SETD3 NM_032233 exon13 c.A1416G p.K472K AATCTCTTTCTCA . 142.0 57.0 148.0 0.0 . 56 . . Atlas-SNP TDRD9 122402 hgsc.bcm.edu hg19 14 104460669 104460669 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TDRD9 NM_153046 exon10 c.G1181T p.G394V CCCTAGGTCTGGG . 77.0 29.0 63.0 0.0 . 175 . . Atlas-SNP TMEM179 388021 hgsc.bcm.edu hg19 14 105070865 105070865 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TMEM179 NM_207379 exon1 c.C214T p.R72C TGAAGCGGCAGGC . 43.0 19.0 63.0 0.0 . 9 . . Atlas-SNP NPAP1 23742 hgsc.bcm.edu hg19 15 24921224 24921224 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_018958 exon1 c.G210T p.R70S TAAGAGGCCGTGT . 46.0 21.0 39.0 0.0 . . . . Atlas-SNP NPAP1 23742 hgsc.bcm.edu hg19 15 24921716 24921716 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_018958 exon1 c.G702A p.L234L CTGCTTGGAAGGC . 61.0 32.0 57.0 0.0 . . . . Atlas-SNP GABRA5 2558 hgsc.bcm.edu hg19 15 27114454 27114454 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GABRA5 NM_001165037 exon3 c.T59A p.I20N TTTGTATTTCCAT . 132.0 45.0 139.0 0.0 . 127 . . Atlas-SNP CHRM5 1133 hgsc.bcm.edu hg19 15 34355220 34355220 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CHRM5 NM_012125 exon3 c.T302G p.L101R GGAGTCTGGCTTG . 138.0 54.0 172.0 0.0 . 59 . . Atlas-SNP ATPBD4 89978 hgsc.bcm.edu hg19 15 35830633 35830633 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ATPBD4 NM_001141972 exon3 c.A154T p.T52S CCACTGTCTGATA . 157.0 70.0 151.0 0.0 . 30 . . Atlas-SNP FAM98B 283742 hgsc.bcm.edu hg19 15 38773693 38773693 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FAM98B NM_001042429 exon7 c.A930C p.E310D AAATGAATTGATG . 150.0 60.0 149.0 0.0 . 53 . . Atlas-SNP GATM 2628 hgsc.bcm.edu hg19 15 45668899 45668899 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GATM NM_001482 exon2 c.A188C p.D63A GGGCAGTCCTTGG . 100.0 37.0 99.0 0.0 . 34 . . Atlas-SNP SPATA5L1 79029 hgsc.bcm.edu hg19 15 45694903 45694903 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SPATA5L1 NM_024063 exon1 c.G276C p.R92S CCGGAGGAGTCTC . 14.0 8.0 10.0 0.0 . 40 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48741033 48741033 + Missense_Mutation SNP G G T rs145082616 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FBN1 NM_000138 exon46 c.C5603A p.T1868K CCAACTGTGTCAA . 69.0 7.0 60.0 0.0 . 310 . G|1.000;A|0.000 Atlas-SNP GABPB1 2553 hgsc.bcm.edu hg19 15 50578223 50578223 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GABPB1 NM_002041 exon8 c.A1077T p.P359P TTATTTTGGATGA . 104.0 45.0 130.0 0.0 . 33 . . Atlas-SNP PRTG 283659 hgsc.bcm.edu hg19 15 55971629 55971629 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PRTG NM_173814 exon7 c.G988T p.V330F ATTCAACAAATGA . 104.0 44.0 88.0 0.0 . 110 . . Atlas-SNP CLN6 54982 hgsc.bcm.edu hg19 15 68504126 68504126 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CLN6 NM_017882 exon4 c.A373T p.S125C GGATGCTGGCACC . 57.0 30.0 105.0 0.0 . 16 . . Atlas-SNP ITGA11 22801 hgsc.bcm.edu hg19 15 68609680 68609680 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ITGA11 NM_001004439 exon21 c.G2638T p.E880X CACACTCAATGCT . 101.0 39.0 130.0 0.0 . 110 . . Atlas-SNP NEO1 4756 hgsc.bcm.edu hg19 15 73564819 73564819 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NEO1 NM_001172623 exon19 c.G2881C p.V961L AAGGATGTGACTG . 91.0 35.0 123.0 0.0 . 102 . . Atlas-SNP ISLR2 57611 hgsc.bcm.edu hg19 15 74426996 74426996 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ISLR2 NM_001130138 exon4 c.C1901G p.P634R AGGCCCCTGACCC . 89.0 40.0 112.0 0.0 . 78 . . Atlas-SNP PSMA4 5685 hgsc.bcm.edu hg19 15 78837269 78837269 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PSMA4 NM_001102667 exon6 c.G346A p.D116N CTGTGTGATATCA . 99.0 39.0 129.0 0.0 . 17 . . Atlas-SNP ADAMTS7 11173 hgsc.bcm.edu hg19 15 79080627 79080627 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 ADAMTS7,neck,malignant_melanoma,0,1 ADAMTS7 NM_014272 exon8 c.C1268T p.A423V GGAGCGGCGTCGT . 84.0 41.0 121.0 1.0 . 142 . . Atlas-SNP NTRK3 4916 hgsc.bcm.edu hg19 15 88472454 88472454 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NTRK3 NM_001012338 exon17 c.T2101A p.S701T CTCTGGACATGCC . 162.0 70.0 197.0 0.0 . 587 . . Atlas-SNP WDR93 56964 hgsc.bcm.edu hg19 15 90272996 90272996 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . WDR93 NM_020212 exon11 c.A1206G p.K402K GGATAAAGCTGGT . 93.0 5.0 135.0 0.0 . 63 . . Atlas-SNP FURIN 5045 hgsc.bcm.edu hg19 15 91423153 91423153 + Nonsense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FURIN NM_002569 exon12 c.C1315T p.Q439X CTGGCCCAGAATT . 122.0 56.0 174.0 0.0 . 85 . . Atlas-SNP LRRK1 79705 hgsc.bcm.edu hg19 15 101523888 101523888 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LRRK1 NM_024652 exon4 c.G417T p.L139F GGAATTGCTTGAG . 65.0 24.0 89.0 0.0 . 310 . . Atlas-SNP LRRK1 79705 hgsc.bcm.edu hg19 15 101595197 101595197 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LRRK1 NM_024652 exon27 c.C4101A p.A1367A AATAGCCTACCAG . 125.0 57.0 156.0 0.0 . 310 . . Atlas-SNP CCNF 899 hgsc.bcm.edu hg19 16 2499281 2499281 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCNF NM_001761 exon12 c.1219-2A>T . CTGTCTAGGTCCC . 60.0 25.0 82.0 0.0 . 110 . . Atlas-SNP C16orf96 342346 hgsc.bcm.edu hg19 16 4625242 4625242 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C16orf96 NM_001145011 exon5 c.A761T p.Q254L TGGCCCAGACCAC . 26.0 6.0 31.0 0.0 . 28 . . Atlas-SNP USP7 7874 hgsc.bcm.edu hg19 16 8988707 8988707 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . USP7 NM_003470 exon29 c.G3045T p.E1015D AAAATGCTCGCCC . 88.0 33.0 104.0 0.0 . 116 . . Atlas-SNP ERCC4 2072 hgsc.bcm.edu hg19 16 14020498 14020498 + Nonsense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ERCC4 NM_005236 exon3 c.A469T p.K157X AAAAACAAACGTG . 80.0 31.0 87.0 0.0 . 100 . . Atlas-SNP MKL2 57496 hgsc.bcm.edu hg19 16 14341108 14341108 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MKL2 NM_014048 exon12 c.C1991T p.P664L GCCAGCCCGTCTC . 72.0 26.0 99.0 0.0 . 103 . . Atlas-SNP ARL6IP1 23204 hgsc.bcm.edu hg19 16 18810100 18810100 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ARL6IP1 NM_015161 exon2 c.G93A p.L31L AGCCATCAGCATC . 120.0 48.0 132.0 0.0 . 23 . . Atlas-SNP C16orf62 57020 hgsc.bcm.edu hg19 16 19640035 19640035 + Missense_Mutation SNP A A C rs370460906 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C16orf62 NM_020314 exon17 c.A1727C p.N576T TTCTCAACGAAGC . 82.0 26.0 107.0 0.0 . 164 . . Atlas-SNP NSMCE1 197370 hgsc.bcm.edu hg19 16 27268833 27268833 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NSMCE1 NM_145080 exon2 c.A59G p.Q20R AGCAACTGGAGGA . 106.0 49.0 146.0 0.0 . 28 . . Atlas-SNP GTF3C1 2975 hgsc.bcm.edu hg19 16 27472839 27472839 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GTF3C1 NM_001520 exon37 c.G6162T p.K2054N CCTTGGCTTTCTC . 45.0 18.0 68.0 0.0 . 210 . . Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30749727 30749727 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SRCAP NM_006662 exon34 c.G8366A p.G2789E GCCCGGGAAGCCC . 66.0 9.0 79.0 0.0 . 298 . . Atlas-SNP C16orf93 90835 hgsc.bcm.edu hg19 16 30771751 30771751 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C16orf93 NM_001195620 exon4 c.T323A p.L108Q CACCCTAGCTCCA . 98.0 35.0 115.0 0.0 . 33 . . Atlas-SNP PHKB 5257 hgsc.bcm.edu hg19 16 47622887 47622887 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PHKB NM_000293 exon10 c.C942G p.S314R TTTTAGCCAGACA . 73.0 26.0 68.0 0.0 . 298 . . Atlas-SNP RBL2 5934 hgsc.bcm.edu hg19 16 53515713 53515713 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RBL2 NM_005611 exon21 c.A3215C p.K1072T GAGAAAAGATTTT . 111.0 57.0 121.0 0.0 . 115 . . Atlas-SNP CCDC135 84229 hgsc.bcm.edu hg19 16 57760018 57760018 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCDC135 NM_032269 exon13 c.C1797A p.P599P GAAGCCCGCGGAG . 239.0 116.0 294.0 0.0 . 97 . . Atlas-SNP CNTNAP4 85445 hgsc.bcm.edu hg19 16 76509861 76509861 + Missense_Mutation SNP G G A rs150806968 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 CNTNAP4_ENST00000478060,neck,malignant_melanoma,0,6 CNTNAP4 NM_138994 exon10 c.G1462A p.G488S GAACACGGTGGGG . 75.0 29.0 112.0 0.0 . 600 . G|1.000;A|0.000 Atlas-SNP OSGIN1 29948 hgsc.bcm.edu hg19 16 83998905 83998905 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OSGIN1 NM_182981 exon6 c.G727A p.V243I AACGTGGTCCTCG . 35.0 15.0 42.0 0.0 . 33 . . Atlas-SNP ATP2C2 9914 hgsc.bcm.edu hg19 16 84459339 84459339 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ATP2C2 NM_014861 exon11 c.920-2A>T . TTCCCCAGGTCTC . 168.0 64.0 152.0 0.0 . 75 . . Atlas-SNP FOXF1 2294 hgsc.bcm.edu hg19 16 86544400 86544400 + Nonsense_Mutation SNP C C A rs121909336 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FOXF1 NM_001451 exon1 c.C225A p.Y75X GATCTACCAGTTC . 121.0 43.0 136.0 0.0 . 59 . . Atlas-SNP IL17C 27189 hgsc.bcm.edu hg19 16 88705453 88705453 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IL17C NM_013278 exon2 c.T71A p.L24H CCTCCCTCAGGGG . 71.0 8.0 79.0 0.0 . 6 . . Atlas-SNP OR1A1 8383 hgsc.bcm.edu hg19 17 3119514 3119514 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 OR1A1,NS,neuroblastoma,0,1 OR1A1 NM_014565 exon1 c.C600A p.Y200X GATGTACCTAGGG . 85.0 36.0 99.0 0.0 . 54 . . Atlas-SNP SPATA22 84690 hgsc.bcm.edu hg19 17 3349813 3349813 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SPATA22 NM_032598 exon7 c.A755G p.Y252C CGCCAATACTTCA . 409.0 155.0 423.0 0.0 . 49 . . Atlas-SNP ZZEF1 23140 hgsc.bcm.edu hg19 17 3937451 3937451 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZZEF1 NM_015113 exon40 c.T6442C p.L2148L CTGGCAAAAGACG . 202.0 78.0 199.0 0.0 . 195 . . Atlas-SNP ZMYND15 84225 hgsc.bcm.edu hg19 17 4649179 4649179 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZMYND15 NM_001267822 exon14 c.C2147A p.A716E GCCCGGCGCCCGG . 245.0 129.0 315.0 0.0 . 87 . . Atlas-SNP SAT2 112483 hgsc.bcm.edu hg19 17 7530941 7530941 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SAT2 NM_133491 exon1 c.C13A p.R5R GGATCCGCACGGA . 89.0 31.0 101.0 0.0 . 8 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7644139 7644139 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DNAH2 NM_020877 exon10 c.G1518A p.R506R CAAGCGGACTTAT . 52.0 18.0 51.0 0.0 . 498 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7660453 7660453 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DNAH2 NM_020877 exon12 c.T1949A p.L650Q AGCGGCTGCTGTT . 73.0 29.0 146.0 0.0 . 498 . . Atlas-SNP ALOX12B 242 hgsc.bcm.edu hg19 17 7989531 7989531 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ALOX12B NM_001139 exon2 c.A155T p.Q52L GTGTACTGGCCCA . 74.0 33.0 102.0 0.0 . 61 . . Atlas-SNP ARHGEF15 22899 hgsc.bcm.edu hg19 17 8215862 8215862 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ARHGEF15 NM_025014 exon2 c.G505C p.D169H GATGCAGATGCCC . 38.0 14.0 39.0 0.0 . 97 . . Atlas-SNP RCVRN 5957 hgsc.bcm.edu hg19 17 9804355 9804355 + Silent SNP C C T rs144667256 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RCVRN NM_002903 exon2 c.G444A p.P148P CTTTTCCGGCGTG . 99.0 49.0 101.0 0.0 . 34 . C|1.000;T|0.000 Atlas-SNP MYH13 8735 hgsc.bcm.edu hg19 17 10212854 10212854 + Silent SNP G G C rs371037408 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MYH13 NM_003802 exon34 c.C4950G p.V1650V GCCCTGGACCGTG . 47.0 21.0 49.0 0.0 . 533 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11696953 11696953 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DNAH9 NM_001372 exon42 c.A8195G p.Q2732R AAATCCAGACAGA . 102.0 40.0 111.0 0.0 . 695 . . Atlas-SNP RAI1 10743 hgsc.bcm.edu hg19 17 17698925 17698925 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RAI1 NM_030665 exon3 c.A2663T p.Q888L GCATGCAGGACCC . 66.0 33.0 80.0 0.0 . 121 . . Atlas-SNP MFAP4 4239 hgsc.bcm.edu hg19 17 19289686 19289686 + Silent SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MFAP4 NM_001198695 exon3 c.C249G p.P83P GCCCGAGGGGTAG . 137.0 59.0 137.0 0.0 . 33 . . Atlas-SNP SLC6A4 6532 hgsc.bcm.edu hg19 17 28534791 28534791 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLC6A4 NM_001045 exon13 c.T1609A p.W537R TCCTCCAGAACCA . 117.0 43.0 205.0 0.0 . 60 . . Atlas-SNP MYO1D 4642 hgsc.bcm.edu hg19 17 31048069 31048069 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MYO1D NM_015194 exon15 c.C1885T p.R629C TCTGGCGGAAGGC . 125.0 10.0 155.0 0.0 . 93 . . Atlas-SNP SLFN13 146857 hgsc.bcm.edu hg19 17 33767910 33767910 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLFN13 NM_144682 exon6 c.T2398A p.F800I TTTCAAAGAAGCA . 114.0 52.0 92.0 0.0 . 79 . . Atlas-SNP CCL14 6358 hgsc.bcm.edu hg19 17 34311402 34311402 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCL14 NM_032962 exon3 c.A214G p.N72D GGCTGTTGGTCTC . 98.0 38.0 111.0 0.0 . 22 . . Atlas-SNP ARHGAP23 57636 hgsc.bcm.edu hg19 17 36619393 36619393 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ARHGAP23 NM_001199417 exon5 c.C384A p.V128V AAGCGTCATTGGG . 107.0 39.0 136.0 0.0 . 48 . . Atlas-SNP KRT23 25984 hgsc.bcm.edu hg19 17 39084545 39084545 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 KRT23,NS,malignant_melanoma,-1,1 KRT23 NM_015515 exon6 c.A866G p.E289G TTCAGTTCGTGGA . 57.0 28.0 89.0 0.0 . 59 . . Atlas-SNP KRTAP4-6 81871 hgsc.bcm.edu hg19 17 39296524 39296524 + Silent SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KRTAP4-6 NM_030976 exon1 c.C216G p.T72T GCAGGTGGTCTGA . 45.0 19.0 47.0 0.0 . 46 . . Atlas-SNP KRTAP29-1 100533177 hgsc.bcm.edu hg19 17 39459055 39459055 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KRTAP29-1 NM_001257309 exon1 c.C49T p.P17S TGGTGGGCACAGC . 102.0 36.0 94.0 0.0 . 2 . . Atlas-SNP KRTAP16-1 100505753 hgsc.bcm.edu hg19 17 39464117 39464117 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KRTAP16-1 NM_001146182 exon1 c.C1389T p.C463C TTTTTTGCAATCC . 103.0 32.0 124.0 0.0 . 12 . . Atlas-SNP KRT34 3885 hgsc.bcm.edu hg19 17 39538297 39538297 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KRT34 NM_021013 exon1 c.G328A p.A110T AGCTGGCCAGGCG . 179.0 69.0 175.0 0.0 . 71 . . Atlas-SNP MLX 6945 hgsc.bcm.edu hg19 17 40721541 40721541 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MLX NM_170607 exon6 c.G555T p.Q185H CATTCAGTTTTTG . 79.0 32.0 83.0 0.0 . 17 . . Atlas-SNP RPL27 6155 hgsc.bcm.edu hg19 17 41150829 41150829 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RPL27 NM_000988 exon2 c.G62A p.R21H CCGGACGCAAAGC . 42.0 19.0 50.0 0.0 . 6 . . Atlas-SNP IFI35 3430 hgsc.bcm.edu hg19 17 41166312 41166312 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IFI35 NM_005533 exon7 c.G863T p.G288V AGTCAGGCTAGGG . 52.0 29.0 80.0 0.0 . 23 . . Atlas-SNP NBR1 4077 hgsc.bcm.edu hg19 17 41349033 41349033 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NBR1 NM_031862 exon16 c.A1936G p.T646A AGTGGGACCCAGT . 187.0 11.0 201.0 0.0 . 55 . . Atlas-SNP SLC4A1 6521 hgsc.bcm.edu hg19 17 42328926 42328926 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLC4A1 NM_000342 exon18 c.C2342T p.S781F ATGCGGGACAGGA . 135.0 47.0 153.0 0.0 . 104 . . Atlas-SNP FMNL1 752 hgsc.bcm.edu hg19 17 43311537 43311537 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FMNL1 NM_005892 exon6 c.C584A p.S195Y CCTCCTCCGTGCC . 63.0 11.0 89.0 0.0 . 78 . . Atlas-SNP NME1 4830 hgsc.bcm.edu hg19 17 49239133 49239133 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NME1 NM_198175 exon6 c.A461T p.E154V AGAAGGAGATCGG . 104.0 53.0 131.0 0.0 . 12 . . Atlas-SNP OR4D2 124538 hgsc.bcm.edu hg19 17 56247411 56247411 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR4D2 NM_001004707 exon1 c.A395G p.Y132C TCCGCTATGTCAC . 73.0 28.0 74.0 0.0 . 48 . . Atlas-SNP BZRAP1 9256 hgsc.bcm.edu hg19 17 56384317 56384317 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BZRAP1 NM_004758 exon25 c.A4996G p.K1666E CATCCTTGTCCCC . 43.0 17.0 48.0 0.0 . 287 . . Atlas-SNP GDPD1 284161 hgsc.bcm.edu hg19 17 57351120 57351120 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GDPD1 NM_182569 exon10 c.A931T p.N311Y TTACATAACTTTT . 65.0 25.0 44.0 0.0 . 39 . . Atlas-SNP NACA2 342538 hgsc.bcm.edu hg19 17 59667968 59667968 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NACA2 NM_199290 exon1 c.A574T p.R192X TTGCTCTCGACAC . 110.0 43.0 109.0 0.0 . 33 . . Atlas-SNP ACE 1636 hgsc.bcm.edu hg19 17 61566056 61566056 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ACE NM_000789 exon16 c.T2353G p.W785G CTGTTATGGGCAT . 70.0 29.0 68.0 0.0 . 187 . . Atlas-SNP GH2 2689 hgsc.bcm.edu hg19 17 61957713 61957713 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GH2 NM_002059 exon5 c.T622C p.C208R AGCGGCACTGCAC . 91.0 11.0 114.0 0.0 . 73 . . Atlas-SNP CSHL1 1444 hgsc.bcm.edu hg19 17 61987231 61987231 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CSHL1 NM_022579 exon5 c.T509A p.L170H TGCTTGAGGGTCT . 150.0 71.0 137.0 0.0 . 42 . . Atlas-SNP MGAT5B 146664 hgsc.bcm.edu hg19 17 74921070 74921070 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MGAT5B NM_198955 exon8 c.C1081A p.R361R CCAGGCCGGGGAA . 54.0 20.0 78.0 0.0 . 98 . . Atlas-SNP AZI1 22994 hgsc.bcm.edu hg19 17 79170793 79170793 + Silent SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . AZI1 NM_014984 exon14 c.G1710C p.V570V CCGCATCACAGAC . 240.0 109.0 240.0 0.0 . 145 . . Atlas-SNP FN3KRP 79672 hgsc.bcm.edu hg19 17 80674715 80674715 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FN3KRP NM_024619 exon1 c.C84T p.G28G CCAGGGCCGGAGC . 449.0 206.0 586.0 2.0 . 31 . . Atlas-SNP EPB41L3 23136 hgsc.bcm.edu hg19 18 5397253 5397253 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 EPB41L3,NS,carcinoma,0,1 EPB41L3 NM_012307 exon18 c.C2645A p.A882E GGCTGTGCTGCAG . 81.0 24.0 90.0 0.0 . 222 . . Atlas-SNP IMPA2 3613 hgsc.bcm.edu hg19 18 12009936 12009936 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IMPA2 NM_014214 exon3 c.C285A p.S95R CCACAGCCCGACG . 92.0 42.0 101.0 0.0 . 27 . . Atlas-SNP CEP192 55125 hgsc.bcm.edu hg19 18 13113583 13113583 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CEP192 NM_032142 exon41 c.7048-2A>T . TTTCGTAGGTCTC . 70.0 32.0 62.0 0.0 . 340 . . Atlas-SNP MC5R 4161 hgsc.bcm.edu hg19 18 13826194 13826194 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MC5R NM_005913 exon1 c.A430C p.I144L GTCACCATCTTCT . 84.0 32.0 105.0 0.0 . 83 . . Atlas-SNP HRH4 59340 hgsc.bcm.edu hg19 18 22057255 22057255 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . HRH4 NM_021624 exon3 c.T902C p.L301S GGAGATTAGCCAA . 142.0 55.0 172.0 0.0 . 46 . . Atlas-SNP KCTD1 284252 hgsc.bcm.edu hg19 18 24126984 24126984 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KCTD1 NM_001142730 exon1 c.A1517T p.Q506L GGCGGCTGGGGGC . 26.0 15.0 26.0 0.0 . 76 . . Atlas-SNP MEP1B 4225 hgsc.bcm.edu hg19 18 29793483 29793483 + Missense_Mutation SNP A A C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MEP1B NM_005925 exon11 c.A1540C p.N514H ATGTCCAATCAGC . 89.0 35.0 89.0 0.0 . 54 . . Atlas-SNP CCDC178 374864 hgsc.bcm.edu hg19 18 30554635 30554635 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_001105528 exon21 c.T2399A p.L800Q CTCTGCAGCTGAC . 43.0 15.0 48.0 0.0 . . . . Atlas-SNP DCC 1630 hgsc.bcm.edu hg19 18 50923756 50923756 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DCC NM_005215 exon18 c.A2767T p.T923S ATGGTAACAAAAA . 145.0 60.0 184.0 0.0 . 360 . . Atlas-SNP TCF4 6925 hgsc.bcm.edu hg19 18 53303052 53303052 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TCF4 NM_001243226 exon1 c.A77T p.Y26F TTTGAGTAATTTG . 116.0 40.0 120.0 0.0 . 178 . . Atlas-SNP ADNP2 22850 hgsc.bcm.edu hg19 18 77896097 77896097 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ADNP2 NM_014913 exon4 c.A2801G p.H934R CCGTCCATTTGGT . 78.0 31.0 57.0 0.0 . 102 . . Atlas-SNP DAZAP1 26528 hgsc.bcm.edu hg19 19 1434882 1434882 + Missense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DAZAP1 NM_018959 exon12 c.G1195C p.V399L CACAACGTGCAAG . 80.0 29.0 96.0 0.0 . 52 . . Atlas-SNP THOP1 7064 hgsc.bcm.edu hg19 19 2810300 2810300 + Splice_Site SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . THOP1 NM_003249 exon10 c.1456-2A>T . CCCTGCAGGCGGA . 45.0 19.0 61.0 0.0 . 49 . . Atlas-SNP PLIN4 729359 hgsc.bcm.edu hg19 19 4510630 4510630 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PLIN4 NM_001080400 exon3 c.G3300T p.K1100N AAGGCCCTTGGTA . 63.0 30.0 65.0 0.0 . 191 . . Atlas-SNP ZNRF4 148066 hgsc.bcm.edu hg19 19 5455751 5455751 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNRF4 NM_181710 exon1 c.C249T p.V83V GGCAGTCAAAGCC . 25.0 11.0 31.0 0.0 . 59 . . Atlas-SNP CCL25 6370 hgsc.bcm.edu hg19 19 8117950 8117950 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCL25 NM_001201359 exon2 c.T17A p.L6Q GGCTCCTGGCCTG . 46.0 22.0 71.0 0.0 . 12 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9048117 9048117 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MUC16 NM_024690 exon5 c.A33514G p.I11172V AAGAAATAGTCAG . 71.0 28.0 112.0 0.0 . 4315 . . Atlas-SNP RDH8 50700 hgsc.bcm.edu hg19 19 10129508 10129508 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RDH8 NM_015725 exon3 c.G424T p.V142F CGTCTCGTCAAAG . 77.0 25.0 81.0 0.0 . 51 . . Atlas-SNP ICAM5 7087 hgsc.bcm.edu hg19 19 10404581 10404581 + Missense_Mutation SNP G G T rs147604357 bycluster;by1000genomes;alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 ICAM5,NS,carcinoma,0,1 ICAM5 NM_003259 exon7 c.G1673T p.R558L ACCCTCGGGGCTC . 41.0 19.0 52.0 0.0 . 53 . G|1.000;A|0.000 Atlas-SNP NANOS3 342977 hgsc.bcm.edu hg19 19 13988465 13988465 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NANOS3 NM_001098622 exon1 c.T403A p.Y135N CAGGGCTACACCT . 52.0 29.0 77.0 0.0 . 19 . . Atlas-SNP CC2D1A 54862 hgsc.bcm.edu hg19 19 14029727 14029727 + Missense_Mutation SNP G G T rs369829647 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CC2D1A NM_017721 exon10 c.G1021T p.V341L CCAGAGGTGCCCC . 167.0 64.0 211.0 0.0 . 67 . . Atlas-SNP EMR3 84658 hgsc.bcm.edu hg19 19 14772862 14772862 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EMR3 NM_032571 exon4 c.G268A p.G90R AACTTCCTTCGAC . 109.0 47.0 122.0 0.0 . 99 . . Atlas-SNP CCDC105 126402 hgsc.bcm.edu hg19 19 15122107 15122107 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCDC105 NM_173482 exon1 c.A470G p.Q157R TGCGCCAGCGCGA . 73.0 26.0 58.0 0.0 . 53 . . Atlas-SNP NOTCH3 4854 hgsc.bcm.edu hg19 19 15281192 15281192 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NOTCH3 NM_000435 exon27 c.T5064C p.S1688S GTGACCAGAGGCC . 51.0 24.0 86.0 0.0 . 340 . . Atlas-SNP ANO8 57719 hgsc.bcm.edu hg19 19 17441186 17441186 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ANO8 NM_020959 exon9 c.T1121C p.L374P AGCATGAGCAAGA . 74.0 31.0 92.0 0.0 . 67 . . Atlas-SNP PIK3R2 5296 hgsc.bcm.edu hg19 19 18273890 18273890 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PIK3R2 NM_005027 exon10 c.A1223G p.E408G GCCACGAGTCTCT . 147.0 50.0 178.0 0.0 . 48 . . Atlas-SNP ZNF708 7562 hgsc.bcm.edu hg19 19 21477081 21477081 + Nonsense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF708 NM_021269 exon4 c.T687A p.C229X TTTTCCACATTCT . 32.0 15.0 27.0 0.0 . 66 . . Atlas-SNP CD22 933 hgsc.bcm.edu hg19 19 35823773 35823773 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CD22 NM_001185100 exon3 c.A358T p.R120W GGGCTGAGGATGG . 76.0 26.0 89.0 0.0 . 129 . . Atlas-SNP APLP1 333 hgsc.bcm.edu hg19 19 36370026 36370026 + Silent SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . APLP1 NM_001024807 exon16 c.C1764A p.I588I GCTGATCATGGGA . 21.0 9.0 44.0 0.0 . 77 . . Atlas-SNP HKR1 284459 hgsc.bcm.edu hg19 19 37854185 37854185 + Silent SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . HKR1 NM_181786 exon6 c.A1488T p.P496P GAAGCCATTTGTA . 128.0 50.0 103.0 0.0 . 74 . . Atlas-SNP SPTBN4 57731 hgsc.bcm.edu hg19 19 41071395 41071395 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SPTBN4 NM_020971 exon28 c.G5982A p.R1994R GGCGCGGGTGCCT . 116.0 48.0 110.0 0.0 . 213 . . Atlas-SNP GRIK5 2901 hgsc.bcm.edu hg19 19 42510881 42510881 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GRIK5 NM_002088 exon15 c.T1953C p.P651P CTCCACAGGCACC . 49.0 17.0 59.0 0.0 . 220 . . Atlas-SNP CIC 23152 hgsc.bcm.edu hg19 19 42795109 42795109 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CIC NM_015125 exon10 c.C2189G p.S730W TGTATTCGGACAA . 104.0 46.0 109.0 0.0 . 249 . . Atlas-SNP CEACAM1 634 hgsc.bcm.edu hg19 19 43013273 43013273 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CEACAM1 NM_001712 exon9 c.A1569G p.V523V CTTTTTTACTTCT . 126.0 61.0 154.0 0.0 . 43 . . Atlas-SNP IRGC 56269 hgsc.bcm.edu hg19 19 44223324 44223324 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IRGC NM_019612 exon2 c.C614A p.A205D GGGAGGCCGGCGT . 34.0 14.0 33.0 0.0 . 67 . . Atlas-SNP SMG9 56006 hgsc.bcm.edu hg19 19 44241827 44241827 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SMG9 NM_019108 exon9 c.A917T p.Q306L GCAATCTGGAGTG . 70.0 26.0 94.0 0.0 . 39 . . Atlas-SNP LYPD5 284348 hgsc.bcm.edu hg19 19 44306498 44306498 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LYPD5 NM_001031749 exon1 c.G35T p.C12F AAGAGGCAGAGCA . 38.0 15.0 68.0 0.0 . 22 . . Atlas-SNP ZNF285 26974 hgsc.bcm.edu hg19 19 44892183 44892183 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF285 NM_152354 exon4 c.A224C p.Q75P CAAATCTGCCAGC . 175.0 67.0 197.0 0.0 . 86 . . Atlas-SNP CYTH2 9266 hgsc.bcm.edu hg19 19 48978146 48978146 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CYTH2 NM_017457 exon8 c.G748T p.G250W GATGACGGGAATG . 97.0 4.0 127.0 0.0 . 33 . . Atlas-SNP BCAT2 587 hgsc.bcm.edu hg19 19 49309901 49309901 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . BCAT2 NM_001190 exon3 c.G173C p.G58A GTCTTCCCAAACA . 60.0 22.0 60.0 0.0 . 35 . . Atlas-SNP LRRC4B 94030 hgsc.bcm.edu hg19 19 51022208 51022208 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LRRC4B NM_001080457 exon3 c.C762T p.S254S GCGCAGGCTGGTG . 66.0 21.0 77.0 0.0 . 89 . . Atlas-SNP SYT3 84258 hgsc.bcm.edu hg19 19 51128790 51128790 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SYT3 NM_032298 exon6 c.G1434T p.E478D CCGCCCCTCGCTG . 84.0 27.0 114.0 0.0 . 85 . . Atlas-SNP SIGLEC7 27036 hgsc.bcm.edu hg19 19 51645871 51645871 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SIGLEC7 NM_016543 exon1 c.A245T p.N82I CAAACAACCCAGC . 95.0 9.0 139.0 0.0 . 74 . . Atlas-SNP HAS1 3036 hgsc.bcm.edu hg19 19 52219555 52219555 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . HAS1 NM_001523 exon4 c.G1015T p.D339Y GCCGGTCATCCCC . 103.0 38.0 163.0 0.0 . 61 . . Atlas-SNP ZNF28 7576 hgsc.bcm.edu hg19 19 53303548 53303548 + Missense_Mutation SNP T T C rs369691107 TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF28 NM_006969 exon4 c.A1550G p.H517R CCAGTATGAACTC . 65.0 21.0 104.0 0.0 . 191 . . Atlas-SNP LILRB3 11025 hgsc.bcm.edu hg19 19 54721082 54721082 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LILRB3 NM_001081450 exon13 c.T1779C p.D593D GGTCACATCCTGG . 166.0 80.0 176.0 0.0 . 67 . . Atlas-SNP LILRA3 11026 hgsc.bcm.edu hg19 19 54803147 54803147 + Nonsense_Mutation SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LILRA3 NM_006865 exon4 c.C530G p.S177X CGGGATGACCCAC . 129.0 46.0 167.0 0.0 . 65 . . Atlas-SNP U2AF2 11338 hgsc.bcm.edu hg19 19 56173908 56173908 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 U2AF2,NS,carcinoma,0,2 U2AF2 NM_001012478 exon6 c.G527T p.G176V GCCTGGGGGGGCT . 131.0 52.0 156.0 1.0 . 62 . . Atlas-SNP PEG3 5178 hgsc.bcm.edu hg19 19 57327366 57327366 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PEG3 NM_001146184 exon9 c.A2444G p.H815R CTCTGATGGTTGA . 148.0 6.0 177.0 0.0 . 414 . . Atlas-SNP ZIM3 114026 hgsc.bcm.edu hg19 19 57646378 57646378 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZIM3 NM_052882 exon5 c.G1327T p.G443X TTTGTCCAGTATG . 127.0 50.0 143.0 0.0 . 107 . . Atlas-SNP ZNF256 10172 hgsc.bcm.edu hg19 19 58452722 58452722 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF256 NM_005773 exon3 c.A1454G p.H485R CCAGTATGAACTT . 56.0 21.0 60.0 0.0 . 117 . . Atlas-SNP SLC27A5 10998 hgsc.bcm.edu hg19 19 59022230 59022230 + Silent SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 SLC27A5,bladder,carcinoma,0,1 SLC27A5 NM_012254 exon2 c.C756T p.L252L ATGGCTGAGGTAG . 52.0 25.0 55.0 0.0 . 58 . . Atlas-SNP SOX12 6666 hgsc.bcm.edu hg19 20 306791 306791 + Missense_Mutation SNP G G A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SOX12 NM_006943 exon1 c.G223A p.G75S CGCCTGGGCCGCC . 123.0 51.0 155.0 0.0 . 8 . . Atlas-SNP STK35 140901 hgsc.bcm.edu hg19 20 2097911 2097911 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . STK35 NM_080836 exon3 c.A1492G p.M498V ACTTCCATGTCTG . 80.0 40.0 127.0 0.0 . 31 . . Atlas-SNP SMOX 54498 hgsc.bcm.edu hg19 20 4155893 4155893 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SMOX NM_175839 exon2 c.T191C p.V64A GCCGTGTGCAGAG . 95.0 36.0 106.0 0.0 . 119 . . Atlas-SNP PLCB4 5332 hgsc.bcm.edu hg19 20 9288511 9288511 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PLCB4 NM_182797 exon2 c.T50G p.L17W CCTTTTTGCAAGA . 80.0 51.0 80.0 0.0 . 204 . . Atlas-SNP PLCB4 5332 hgsc.bcm.edu hg19 20 9352961 9352961 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PLCB4 NM_182797 exon9 c.T597A p.I199I TGAAATTGAGCCC . 165.0 80.0 186.0 0.0 . 204 . . Atlas-SNP PAK7 57144 hgsc.bcm.edu hg19 20 9525119 9525119 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PAK7 NM_177990 exon8 c.T1766C p.F589S GCACAGAAACCAA . 139.0 48.0 169.0 0.0 . 194 . . Atlas-SNP SEC23B 10483 hgsc.bcm.edu hg19 20 18491619 18491619 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SEC23B NM_032985 exon2 c.A140G p.E47G TGAAAGAACGTCC . 239.0 106.0 216.0 0.0 . 70 . . Atlas-SNP C20orf26 26074 hgsc.bcm.edu hg19 20 20144825 20144825 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C20orf26 NM_015585 exon11 c.T1158A p.A386A CTCAGCTGCTTTT . 60.0 19.0 77.0 0.0 . 188 . . Atlas-SNP C20orf26 26074 hgsc.bcm.edu hg19 20 20269371 20269371 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C20orf26 NM_015585 exon23 c.T2915C p.I972T ACGACATAGCCAT . 166.0 66.0 218.0 0.0 . 188 . . Atlas-SNP NANP 140838 hgsc.bcm.edu hg19 20 25596957 25596957 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NANP NM_152667 exon2 c.G351T p.M117I AGTAAGCATGGCT . 89.0 37.0 121.0 0.0 . 10 . . Atlas-SNP TM9SF4 9777 hgsc.bcm.edu hg19 20 30738606 30738606 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TM9SF4 NM_014742 exon12 c.G1173T p.V391V CAGGGTGTTTGGC . 110.0 50.0 133.0 0.0 . 65 . . Atlas-SNP NCOA6 23054 hgsc.bcm.edu hg19 20 33324500 33324500 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NCOA6 NM_014071 exon12 c.A5956T p.R1986X CTGGTCTGGCAAC . 123.0 54.0 146.0 0.0 . 219 . . Atlas-SNP RBM12 10137 hgsc.bcm.edu hg19 20 34242510 34242510 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 RBM12,NS,carcinoma,0,1 RBM12 NM_001198840 exon2 c.G735A p.P245P CAAGGGCGGCATG . 72.0 26.0 81.0 2.0 . 93 . . Atlas-SNP RBL1 5933 hgsc.bcm.edu hg19 20 35632146 35632146 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RBL1 NM_183404 exon21 c.A2995T p.R999X CGCTTCTTGGTGT . 228.0 97.0 213.0 0.0 . 114 . . Atlas-SNP WFDC3 140686 hgsc.bcm.edu hg19 20 44405762 44405762 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . WFDC3 NM_080614 exon5 c.T445A p.C149S TGCAGCATTTATG . 151.0 62.0 190.0 0.0 . 18 . . Atlas-SNP WFDC3 140686 hgsc.bcm.edu hg19 20 44418554 44418554 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . WFDC3 NM_080614 exon2 c.T61A p.W21R TTATCCAGGATTC . 66.0 20.0 115.0 0.0 . 18 . . Atlas-SNP ZNF334 55713 hgsc.bcm.edu hg19 20 45130946 45130946 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF334 NM_018102 exon5 c.A1032T p.T344T CTCCCCTGTGTGT . 97.0 40.0 107.0 0.0 . 101 . . Atlas-SNP PSMA7 5688 hgsc.bcm.edu hg19 20 60718284 60718284 + Missense_Mutation SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PSMA7 NM_002792 exon1 c.G76C p.V26L TCTTGACGGCCTC . 18.0 14.0 9.0 0.0 . 13 . . Atlas-SNP PSMA7 5688 hgsc.bcm.edu hg19 20 60718296 60718296 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PSMA7 NM_002792 exon1 c.G64T p.A22S CCTGCGCGTACTC . 16.0 12.0 11.0 0.0 . 13 . . Atlas-SNP COL20A1 57642 hgsc.bcm.edu hg19 20 61947981 61947981 + Silent SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . COL20A1 NM_020882 exon21 c.T2601C p.S867S GCCCTCTGCCTTC . 38.0 16.0 77.0 0.0 . 137 . . Atlas-SNP HELZ2 85441 hgsc.bcm.edu hg19 20 62203527 62203527 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_001037335 exon2 c.A212T p.D71V GCCTGGTCGAAGG . 83.0 23.0 79.0 0.0 . . . . Atlas-SNP ZGPAT 84619 hgsc.bcm.edu hg19 20 62366141 62366141 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZGPAT NM_032527 exon5 c.G1016T p.R339I GCTCCAGACTCCT . 94.0 35.0 88.0 0.0 . 57 . . Atlas-SNP HSPA13 6782 hgsc.bcm.edu hg19 21 15746215 15746215 + Missense_Mutation SNP T T G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . HSPA13 NM_006948 exon5 c.A1139C p.K380T AGTATTTTCTGAA . 149.0 71.0 153.0 0.0 . 44 . . Atlas-SNP CCT8 10694 hgsc.bcm.edu hg19 21 30437364 30437364 + Silent SNP A A C rs143385323 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCT8 NM_006585 exon7 c.T687G p.G229G TACATCACCTTCG . 75.0 38.0 90.0 0.0 . 38 . A|0.999;G|0.001 Atlas-SNP IFNAR1 3454 hgsc.bcm.edu hg19 21 34715660 34715660 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IFNAR1 NM_000629 exon4 c.A463T p.M155L AGTGTTATGTGGG . 113.0 48.0 98.0 0.0 . 44 . . Atlas-SNP UMODL1 89766 hgsc.bcm.edu hg19 21 43496123 43496123 + Missense_Mutation SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . UMODL1 NM_173568 exon2 c.T86A p.L29H AAGGCCTCTCCCT . 92.0 34.0 131.0 0.0 . 186 . . Atlas-SNP ARVCF 421 hgsc.bcm.edu hg19 22 19969151 19969151 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ARVCF NM_001670 exon5 c.A479G p.D160G GCACCATCTGCAA . 38.0 19.0 44.0 0.0 . 54 . . Atlas-SNP HPS4 89781 hgsc.bcm.edu hg19 22 26860234 26860234 + Silent SNP G G C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . HPS4 NM_022081 exon11 c.C1362G p.P454P GGGAATGGGGGCT . 52.0 20.0 82.0 0.0 . 123 . . Atlas-SNP PLA2G3 50487 hgsc.bcm.edu hg19 22 31533830 31533830 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PLA2G3 NM_015715 exon4 c.G932T p.G311V GGTGGCCCCTTCC . 90.0 37.0 144.0 0.0 . 85 . . Atlas-SNP RFPL2 10739 hgsc.bcm.edu hg19 22 32586882 32586882 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . RFPL2 NM_001098527 exon5 c.G1014A p.E338E CAATGGCTCCTCA . 264.0 116.0 250.0 1.0 . 81 . . Atlas-SNP ENTHD1 150350 hgsc.bcm.edu hg19 22 40257983 40257983 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ENTHD1 NM_152512 exon3 c.G379T p.V127F TGATGACTTGCTT . 194.0 81.0 209.0 0.0 . 83 . . Atlas-SNP TNRC6B 23112 hgsc.bcm.edu hg19 22 40708962 40708962 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TNRC6B NM_001162501 exon19 c.G4639T p.A1547S TACAGTGCCTCTG . 106.0 39.0 110.0 0.0 . 195 . . Atlas-SNP FBLN1 2192 hgsc.bcm.edu hg19 22 45970507 45970507 + Missense_Mutation SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . FBLN1 NM_006486 exon15 c.C1814T p.T605I TGCCTACCTTCCG . 57.0 22.0 82.0 0.0 . 143 . . Atlas-SNP GTSE1 51512 hgsc.bcm.edu hg19 22 46719148 46719148 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GTSE1 NM_016426 exon8 c.G1494T p.T498T GTGCACGTCAGTT . 57.0 23.0 82.0 0.0 . 100 . . Atlas-SNP MOV10L1 54456 hgsc.bcm.edu hg19 22 50580530 50580530 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MOV10L1 NM_018995 exon16 c.C2091T p.D697D GACGGACCAAGCT . 79.0 37.0 85.0 0.0 . 238 . . Atlas-SNP ACR 49 hgsc.bcm.edu hg19 22 51178223 51178223 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ACR NM_001097 exon3 c.T383C p.I128T AGAAAATCATCAT . 126.0 58.0 156.0 0.0 . 28 . . Atlas-SNP NLGN4X 57502 hgsc.bcm.edu hg19 X 6069058 6069058 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NLGN4X NM_181332 exon2 c.C450A p.N150K GTAGATGTTTAAG . 51.0 41.0 74.0 0.0 . 191 . . Atlas-SNP PTCHD1 139411 hgsc.bcm.edu hg19 X 23397834 23397834 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PTCHD1 NM_173495 exon2 c.C478T p.L160L GAAGAGCTAAAGA . 242.0 204.0 358.0 0.0 . 213 . . Atlas-SNP SUPT20HL1 100130302 hgsc.bcm.edu hg19 X 24383280 24383280 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . . NM_001136234 exon1 c.G2403T p.Q801H ACCGCAGTGGCAG . 77.0 66.0 121.0 1.0 . . . . Atlas-SNP MAGEB5 347541 hgsc.bcm.edu hg19 X 26235588 26235588 + Missense_Mutation SNP T T C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MAGEB5 NM_001271752 exon2 c.T170C p.M57T TCAAAATGAAACA . 132.0 111.0 124.0 0.0 . 5 . . Atlas-SNP PPP1R3F 89801 hgsc.bcm.edu hg19 X 49143177 49143177 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PPP1R3F NM_033215 exon4 c.A2025G p.I675M CCAGATAGAGGTC . 115.0 99.0 134.0 0.0 . 56 . . Atlas-SNP APEX2 27301 hgsc.bcm.edu hg19 X 55033578 55033578 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . APEX2 NM_014481 exon6 c.A1267T p.T423S CTCATGACCCCGA . 86.0 62.0 124.0 0.0 . 50 . . Atlas-SNP KIF4A 24137 hgsc.bcm.edu hg19 X 69572476 69572476 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KIF4A NM_012310 exon14 c.A1458G p.A486A GGCTGCAGCCATT . 152.0 77.0 104.0 0.0 . 118 . . Atlas-SNP TEX11 56159 hgsc.bcm.edu hg19 X 69772028 69772028 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TEX11 NM_001003811 exon29 c.T2513A p.L838Q TCTTCCAGGGGAC . 467.0 215.0 326.0 1.0 . 132 . . Atlas-SNP P2RY10 27334 hgsc.bcm.edu hg19 X 78216943 78216943 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . P2RY10 NM_198333 exon2 c.C926A p.A309D TTATGGCTTCAGA . 188.0 84.0 125.0 0.0 . 99 . . Atlas-SNP PCDH11X 27328 hgsc.bcm.edu hg19 X 91131828 91131828 + Nonsense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PCDH11X NM_001168363 exon2 c.A589T p.K197X GGAGACAAGATGC . 554.0 238.0 333.0 1.0 . 714 . . Atlas-SNP PCDH11X 27328 hgsc.bcm.edu hg19 X 91873264 91873264 + Silent SNP T T A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . PCDH11X NM_032968 exon7 c.T3369A p.A1123A AACAGCTGCAGAA . 245.0 116.0 112.0 0.0 . 714 . . Atlas-SNP COL4A6 1288 hgsc.bcm.edu hg19 X 107464587 107464587 + Silent SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . COL4A6 NM_001847 exon4 c.T165C p.I55I AATTCCAATTGGT . 153.0 73.0 89.0 0.0 . 270 . . Atlas-SNP GPC4 2239 hgsc.bcm.edu hg19 X 132458433 132458433 + Missense_Mutation SNP C C A novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GPC4 NM_001448 exon3 c.G451T p.V151L CCACCACGTAGTA . 200.0 91.0 118.0 0.0 . 58 . . Atlas-SNP GPR112 139378 hgsc.bcm.edu hg19 X 135488040 135488040 + Missense_Mutation SNP A A T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . GPR112 NM_153834 exon23 c.A8844T p.L2948F ATTCTTACTTGGC . 157.0 26.0 76.0 0.0 . 459 . . Atlas-SNP MAGEC3 139081 hgsc.bcm.edu hg19 X 140969387 140969387 + Silent SNP C C T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MAGEC3 NM_138702 exon4 c.C714T p.G238G TTTTGGCATTTCC . 141.0 60.0 89.0 0.0 . 228 . . Atlas-SNP AFF2 2334 hgsc.bcm.edu hg19 X 147743516 147743516 + Missense_Mutation SNP A A G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . AFF2 NM_002025 exon3 c.A268G p.N90D CATTCTAATCAGA . 394.0 176.0 248.0 0.0 . 679 . . Atlas-SNP EMD 2010 hgsc.bcm.edu hg19 X 153607910 153607910 + Silent SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . EMD NM_000117 exon1 c.G66T p.P22P CATCCCGCACGGG . 100.0 46.0 77.0 0.0 . 25 . . Atlas-SNP CTAG2 30848 hgsc.bcm.edu hg19 X 153880820 153880820 + Missense_Mutation SNP G G T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CTAG2 NM_020994 exon2 c.C355A p.P119T CCCCTGGTCGGGG . 178.0 88.0 134.0 0.0 . 88 . . Atlas-SNP VBP1 7411 hgsc.bcm.edu hg19 X 154444801 154444801 + Silent SNP C C G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . VBP1 NM_003372 exon1 c.C42G p.A14A AATGGCCACAGGG . 130.0 72.0 69.0 0.0 . 20 . . Atlas-SNP C9orf50 375759 hgsc.bcm.edu hg19 9 132375462 132375471 + Frame_Shift_Del DEL GAACAGAAGG GAACAGAAGG - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 GAACAGAAGG GAACAGAAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . C9orf50 NM_199350 exon6 c.1104_1113del p.368_371del . . 87.0 25.0 105.0 0.0 . 25 . . Atlas-Indel,Pindel LMBRD1 55788 hgsc.bcm.edu hg19 6 70411411 70411411 + Frame_Shift_Del DEL C C - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LMBRD1 NM_018368 exon11 c.1008delA p.G336fs . . 240.0 99.0 211.0 0.0 . 61 . . Atlas-Indel,Pindel CTNNB1 1499 hgsc.bcm.edu hg19 3 41266127 41266150 + In_Frame_Del DEL ACAGCTCCTTCTCTGAGTGGTAAA ACAGCTCCTTCTCTGAGTGGTAAA - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 ACAGCTCCTTCTCTGAGTGGTAAA ACAGCTCCTTCTCTGAGTGGTAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 CTNNB1,gallbladder,other,+2,3 CTNNB1 NM_001098210 exon3 c.123_146del p.41_49del . . 95.0 63.0 195.0 0.0 . 4904 . . Atlas-Indel,Pindel IFIT5 24138 hgsc.bcm.edu hg19 10 91174557 91174558 + Frame_Shift_Ins INS - - GA novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . IFIT5 NM_012420 exon1 c.2_3insGA p.M1fs . . 78.0 45.0 40.0 0.0 . 32 . . Atlas-Indel,Pindel NCSTN 23385 hgsc.bcm.edu hg19 1 160314603 160314606 + Frame_Shift_Del DEL GATT GATT - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 GATT GATT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NCSTN NM_015331 exon2 c.176_179del p.59_60del . . 180.0 116.0 122.0 0.0 . 64 . . Atlas-Indel,Pindel DGAT1 8694 hgsc.bcm.edu hg19 8 145540683 145540684 + Splice_Site INS - - CC novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . DGAT1 NM_012079 exon16 c.1248+2->GG . . . 116.0 58.0 68.0 0.0 . 26 . . Atlas-Indel,Pindel LGSN 51557 hgsc.bcm.edu hg19 6 63990332 63990334 + In_Frame_Del DEL TCT TCT - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 TCT TCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LGSN NM_016571 exon4 c.1123_1125del p.375_375del . . 76.0 39.0 74.0 0.0 . 82 . . Atlas-Indel,Pindel ACSM5 54988 hgsc.bcm.edu hg19 16 20432662 20432663 + Frame_Shift_Ins INS - - C novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ACSM5 NM_017888 exon5 c.706_707insC p.A236fs . . 67.0 30.0 86.0 0.0 . 101 . . Atlas-Indel,Pindel NFAT5 10725 hgsc.bcm.edu hg19 16 69703941 69703943 + In_Frame_Del DEL AGA AGA - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 AGA AGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NFAT5 NM_001113178 exon8 c.1430_1432del p.477_478del . . 233.0 85.0 305.0 0.0 . 184 . . Atlas-Indel,Pindel ZNF687 57592 hgsc.bcm.edu hg19 1 151262629 151262630 + Frame_Shift_Ins INS - - G novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ZNF687 NM_020832 exon7 c.2996_2997insG p.E999fs . . 164.0 30.0 114.0 0.0 . 94 . . Atlas-Indel,Pindel XPO6 23214 hgsc.bcm.edu hg19 16 28137133 28137141 + In_Frame_Del DEL CGGCAGTCG CGGCAGTCG - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 CGGCAGTCG CGGCAGTCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . XPO6 NM_015171 exon13 c.1636_1644del p.546_548del . . 50.0 17.0 70.0 0.0 . 177 . . Atlas-Indel,Pindel CCDC83 220047 hgsc.bcm.edu hg19 11 85622367 85622411 + In_Frame_Del DEL TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . CCDC83 NM_173556 exon8 c.715_759del p.239_253del . . 139.0 15.0 228.0 0.0 . 48 . . Atlas-Indel,Pindel SLC41A3 54946 hgsc.bcm.edu hg19 3 125775394 125775416 + Frame_Shift_Del DEL ATGGCCAGGCAATGCACCACGAT ATGGCCAGGCAATGCACCACGAT - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 ATGGCCAGGCAATGCACCACGAT ATGGCCAGGCAATGCACCACGAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SLC41A3 NM_001008487 wholegene . . . . 75.0 14.0 139.0 0.0 . 80 . . Atlas-Indel,Pindel KCNN3 3782 hgsc.bcm.edu hg19 1 154842221 154842222 + In_Frame_Ins INS - - CTGCTGCTGCTGCTGCTA rs3831942 alternate_allele TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KCNN3 NM_001204087 exon1 c.220_221insTAGCAGCAGCAGCAGCAG p.Q74delinsX . . 136.0 41.0 73.0 0.0 . 141 . . Atlas-Indel,Pindel SHOC2 8036 hgsc.bcm.edu hg19 10 112724768 112724768 + Frame_Shift_Del DEL A A - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . SHOC2 NM_007373 exon2 c.651delC p.L217fs . . 132.0 42.0 99.0 0.0 . 49 . . Atlas-Indel,Pindel KRTAP5-6 440023 hgsc.bcm.edu hg19 11 1718512 1718532 + In_Frame_Del DEL GGCTGTGGGGGCTGTGGCTCT GGCTGTGGGGGCTGTGGCTCT - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 GGCTGTGGGGGCTGTGGCTCT GGCTGTGGGGGCTGTGGCTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . KRTAP5-6 NM_001012416 exon1 c.36_56del p.12_19del . . 140.0 44.0 154.0 0.0 . 18 . . Atlas-Indel,Pindel ASXL1 171023 hgsc.bcm.edu hg19 20 31023559 31023580 + Frame_Shift_Del DEL AGGCTGACACTAGAGAAGCTGC AGGCTGACACTAGAGAAGCTGC - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 AGGCTGACACTAGAGAAGCTGC AGGCTGACACTAGAGAAGCTGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . ASXL1 NM_015338 exon12 c.3043_3064del p.1015_1022del . . 59.0 24.0 75.0 0.0 . 1114 . . Atlas-Indel,Pindel NSUN4 387338 hgsc.bcm.edu hg19 1 46810731 46810732 + Frame_Shift_Ins INS - - T novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . NSUN4 NM_199044 exon2 c.352_353insT p.P118fs . . 83.0 36.0 74.0 0.0 . 26 . . Atlas-Indel,Pindel HECW1 23072 hgsc.bcm.edu hg19 7 43484497 43484497 + Frame_Shift_Del DEL G G - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . HECW1 NM_015052 exon11 c.1725delC p.G575fs . . 53.0 14.0 50.0 0.0 . 540 . . Pindel LRRC7 57554 hgsc.bcm.edu hg19 1 70504419 70504419 + Frame_Shift_Del DEL C C - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . LRRC7 NM_020794 exon19 c.2797delT p.S933fs . . 258.0 66.0 303.0 0.0 . 400 . . Pindel TRPM2 7226 hgsc.bcm.edu hg19 21 45811258 45811258 + Frame_Shift_Del DEL C C - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . TRPM2 NM_003307 exon11 c.1543delA p.T515fs . . 98.0 29.0 140.0 0.0 . 196 . . Pindel MEN1 4221 hgsc.bcm.edu hg19 11 64573793 64573793 + Frame_Shift_Del DEL G G - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . MEN1 NM_130800 exon7 c.976delT p.Y326fs . . 94.0 45.0 201.0 0.0 . 442 . . Pindel OR2F2 135948 hgsc.bcm.edu hg19 7 143633258 143633258 + Frame_Shift_Del DEL A A - novel TCGA-CC-A7IH-01A-11D-A33K-10 TCGA-CC-A7IH-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d3ad3bc-b5be-4233-a04b-909afa0302cf aa24c0b3-7197-431d-b840-98fb061c54f6 . OR2F2 NM_001004685 exon1 c.932delT p.L311X . . 59.0 19.0 50.0 0.0 . 63 . . Pindel