Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm SCNN1D 6339 hgsc.bcm.edu hg19 1 1223365 1223365 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SCNN1D NM_001130413 exon12 c.G1610T p.G537V CCGCCGGCGGGGA . 105.0 52.0 150.0 0.0 . 60 . . Atlas-SNP PRDM16 63976 hgsc.bcm.edu hg19 1 3328344 3328344 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PRDM16 NM_022114 exon9 c.T1583A p.L528Q CGCCTCTGCTACC . 27.0 10.0 50.0 0.0 . 147 . . Atlas-SNP KIF1B 23095 hgsc.bcm.edu hg19 1 10384901 10384901 + Missense_Mutation SNP A A C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KIF1B NM_015074 exon24 c.A2485C p.T829P ACTGTGACTGGCA . 83.0 35.0 78.0 0.0 . 242 . . Atlas-SNP PLA2G2F 64600 hgsc.bcm.edu hg19 1 20474788 20474788 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PLA2G2F NM_022819 exon5 c.T530A p.L177H GCTTCCTCAATGT . 193.0 81.0 310.0 1.0 . 28 . . Atlas-SNP ARID1A 8289 hgsc.bcm.edu hg19 1 27107029 27107029 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ARID1A NM_006015 exon20 c.A6640T p.S2214C CAGGCCAGCCTCC . 90.0 38.0 124.0 0.0 . 842 . . Atlas-SNP MAP3K6 9064 hgsc.bcm.edu hg19 1 27684710 27684710 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MAP3K6 NM_004672 exon21 c.G2877A p.P959P GCGCTTCGGGGGG . 96.0 43.0 128.0 0.0 . 134 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34038176 34038176 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 CSMD2_ENST00000373381,colon,carcinoma,0,2 CSMD2 NM_052896 exon51 c.C7698T p.G2566G CTCAGCGCCTGCC . 87.0 35.0 107.0 0.0 . 946 . . Atlas-SNP MTF1 4520 hgsc.bcm.edu hg19 1 38287832 38287832 + Missense_Mutation SNP T T G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MTF1 NM_005955 exon9 c.A1728C p.L576F ACCATTTAATATC . 163.0 78.0 233.0 0.0 . 67 . . Atlas-SNP CCDC30 728621 hgsc.bcm.edu hg19 1 43055011 43055011 + Missense_Mutation SNP G G A rs145632548 TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 CCDC30,NS,carcinoma,0,1 CCDC30 NM_001080850 exon9 c.G1240A p.V414I CAGAACGTAGATG . 46.0 18.0 67.0 0.0 . 78 . G|1.000;A|0.000 Atlas-SNP LRIG2 9860 hgsc.bcm.edu hg19 1 113655151 113655151 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LRIG2 NM_014813 exon14 c.G1849T p.A617S ACTGGTGCCATGG . 79.0 17.0 123.0 0.0 . 67 . . Atlas-SNP PDE4DIP 9659 hgsc.bcm.edu hg19 1 144854658 144854658 + Splice_Site SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PDE4DIP NM_001198834 exon43 c.6814-2A>T . TCTCCCTGGATAA . 145.0 9.0 126.0 0.0 . 817 . . Atlas-SNP NBPF10 100132406 hgsc.bcm.edu hg19 1 145367800 145367800 + Missense_Mutation SNP G G A rs201525063 bycluster TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 NBPF10,rectum,carcinoma,0,2 NBPF10 NM_001039703 exon83 c.G10396A p.D3466N GAAGAAGATCAAA . 6.0 3.0 1.0 0.0 . 221 . . Atlas-SNP RNF115 27246 hgsc.bcm.edu hg19 1 145688137 145688137 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RNF115 NM_014455 exon9 c.A832T p.T278S GACTCTACTCGGC . 242.0 61.0 166.0 0.0 . 27 . . Atlas-SNP KPRP 448834 hgsc.bcm.edu hg19 1 152732782 152732782 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KPRP NM_001025231 exon2 c.T718A p.Y240N GGCTCCTATGGGA . 146.0 35.0 80.0 0.0 . 152 . . Atlas-SNP LCE1B 353132 hgsc.bcm.edu hg19 1 152785001 152785001 + Missense_Mutation SNP C C G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LCE1B NM_178349 exon1 c.C79G p.P27A CTCACCCCTAGAT . 367.0 174.0 245.0 1.0 . 45 . . Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155449286 155449286 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ASH1L NM_018489 exon3 c.A3375T p.A1125A AAAACCTGCATCA . 186.0 52.0 142.0 0.0 . 279 . . Atlas-SNP HAPLN2 60484 hgsc.bcm.edu hg19 1 156594457 156594457 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . HAPLN2 NM_021817 exon6 c.T621A p.P207P CTACCCTGTGCTC . 30.0 7.0 31.0 0.0 . 20 . . Atlas-SNP CRABP2 1382 hgsc.bcm.edu hg19 1 156670823 156670823 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CRABP2 NM_001199723 exon3 c.A92T p.K31M GCAATCTTCCTCA . 116.0 31.0 77.0 0.0 . 13 . . Atlas-SNP FCRL1 115350 hgsc.bcm.edu hg19 1 157767574 157767574 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FCRL1 NM_001159397 exon8 c.A1034T p.Q345L TGCTGTTGTCTGC . 202.0 33.0 125.0 0.0 . 164 . . Atlas-SNP NUF2 83540 hgsc.bcm.edu hg19 1 163295880 163295880 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NUF2 NM_145697 exon2 c.G39C p.E13D AGCTGAGATTGTG . 93.0 18.0 58.0 0.0 . 138 . . Atlas-SNP TEX35 84066 hgsc.bcm.edu hg19 1 178490806 178490806 + Splice_Site SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TEX35 NM_001170723 exon9 c.587-1G>T . AACCTAGCGCAGC . 189.0 38.0 149.0 0.0 . 15 . . Atlas-SNP KCNT2 343450 hgsc.bcm.edu hg19 1 196197434 196197434 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KCNT2 NM_198503 exon28 c.C3328G p.L1110V TTGGAAGGTAGGC . 87.0 17.0 60.0 0.0 . 243 . . Atlas-SNP CACNA1S 779 hgsc.bcm.edu hg19 1 201060850 201060850 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CACNA1S NM_000069 exon5 c.C612T p.L204L CATAAAGAGGACC . 220.0 32.0 211.0 0.0 . 249 . . Atlas-SNP MFSD4 148808 hgsc.bcm.edu hg19 1 205553249 205553249 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MFSD4 NM_181644 exon4 c.T857A p.L286Q CACACCTAGGTAG . 46.0 12.0 54.0 0.0 . 46 . . Atlas-SNP PRSS38 339501 hgsc.bcm.edu hg19 1 228003457 228003457 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PRSS38 NM_183062 exon1 c.T40A p.S14T GGGCCCTCTGCCC . 129.0 43.0 131.0 0.0 . 55 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228563447 228563447 + Missense_Mutation SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 OBSCN_ENST00000570156,NS,carcinoma,0,2 OBSCN NM_001271223 exon109 c.G25579A p.A8527T GTGTACGCGGATG . 171.0 41.0 184.0 0.0 . 2142 . . Atlas-SNP ITSN2 50618 hgsc.bcm.edu hg19 2 24438936 24438936 + Silent SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ITSN2 NM_006277 exon32 c.T3972C p.D1324D TTTGAAATCTGTG . 87.0 16.0 60.0 0.0 . 224 . . Atlas-SNP DTNB 1838 hgsc.bcm.edu hg19 2 25705696 25705696 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . DTNB NM_021907 exon10 c.A1048G p.M350V AGGACATGTGGCT . 111.0 76.0 96.0 0.0 . 43 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73678026 73678026 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ALMS1 NM_015120 exon8 c.G4369T p.A1457S TCAGTTGCTCCTG . 124.0 75.0 91.0 0.0 . 384 . . Atlas-SNP SULT1C4 27233 hgsc.bcm.edu hg19 2 108999919 108999919 + Nonsense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SULT1C4 NM_006588 exon5 c.A568T p.K190X GAAGCCAAAGACA . 93.0 55.0 82.0 0.0 . 41 . . Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152539201 152539201 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NEB NM_004543 exon29 c.A2918T p.K973M GCTCGCTTTGCCT . 109.0 31.0 77.0 0.0 . 1697 . . Atlas-SNP IFIH1 64135 hgsc.bcm.edu hg19 2 163124064 163124064 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . IFIH1 NM_022168 exon15 c.A2823G p.V941V TTCTCTTACAATG . 34.0 15.0 43.0 0.0 . 102 . . Atlas-SNP MFSD6 54842 hgsc.bcm.edu hg19 2 191301292 191301292 + Silent SNP G G A rs115585862 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MFSD6 NM_017694 exon3 c.G537A p.L179L TATCCTGCCAACA . 93.0 32.0 86.0 0.0 . 58 . G|0.996;T|0.004 Atlas-SNP RFTN2 130132 hgsc.bcm.edu hg19 2 198508920 198508920 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RFTN2 NM_144629 exon3 c.G400A p.A134T TTTGTGCCTCAGA . 130.0 73.0 104.0 0.0 . 68 . . Atlas-SNP ERBB4 2066 hgsc.bcm.edu hg19 2 212812232 212812232 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ERBB4 NM_001042599 exon3 c.A344T p.Y115F AAGGCATATCGAT . 94.0 58.0 97.0 0.0 . 480 . . Atlas-SNP SEPT2 4735 hgsc.bcm.edu hg19 2 242283230 242283230 + Nonsense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SEPT2 NM_001008491 exon10 c.A760T p.R254X AAGGTCAGAGGCC . 162.0 44.0 123.0 0.0 . 33 . . Atlas-SNP CHL1 10752 hgsc.bcm.edu hg19 3 383657 383657 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CHL1 NM_001253388 exon5 c.G571T p.A191S TACTTCGCAAACG . 340.0 174.0 229.0 0.0 . 242 . . Atlas-SNP FBLN2 2199 hgsc.bcm.edu hg19 3 13670761 13670761 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FBLN2 NM_001004019 exon13 c.T2811C p.F937F CGGCTTTCAGCGG . 107.0 60.0 112.0 0.0 . 137 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266101 41266101 + Missense_Mutation SNP C C A rs121913400 bycluster TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 CTNNB1,gallbladder,other,0,359 CTNNB1 NM_001098209 exon3 c.C98A p.S33Y TGGACTCTGGAAT . 145.0 44.0 139.0 0.0 . 4904 . . Atlas-SNP KIF15 56992 hgsc.bcm.edu hg19 3 44879894 44879894 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KIF15 NM_020242 exon27 c.T3299A p.I1100N CCCTGATTCAGGA . 150.0 86.0 155.0 0.0 . 103 . . Atlas-SNP CCR1 1230 hgsc.bcm.edu hg19 3 46244963 46244963 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CCR1 NM_001295 exon2 c.T842A p.L281Q ACAGCCAGGTCCA . 131.0 77.0 114.0 0.0 . 36 . . Atlas-SNP P4HTM 54681 hgsc.bcm.edu hg19 3 49042389 49042389 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . P4HTM NM_177938 exon6 c.A983T p.H328L ATGCCCACGTGGA . 102.0 58.0 110.0 0.0 . 71 . . Atlas-SNP ITIH4 3700 hgsc.bcm.edu hg19 3 52848087 52848087 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ITIH4 NM_002218 exon23 c.G2627T p.G876V AACTGGCCTGAGA . 99.0 27.0 111.0 0.0 . 74 . . Atlas-SNP B3GALNT1 8706 hgsc.bcm.edu hg19 3 160803895 160803895 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . B3GALNT1 NM_001038628 exon8 c.A648T p.R216S AAATCCTCTATAG . 26.0 5.0 28.0 0.0 . 34 . . Atlas-SNP ZBBX 79740 hgsc.bcm.edu hg19 3 166960387 166960387 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 ZBBX_ENST00000455345,colon,carcinoma,0,2 ZBBX NM_001199201 exon21 c.G2299A p.D767N TGAAATCTGGGAA . 48.0 16.0 29.0 0.0 . 299 . . Atlas-SNP EIF4G1 1981 hgsc.bcm.edu hg19 3 184039550 184039550 + Missense_Mutation SNP C C G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . EIF4G1 NM_001194946 exon11 c.C1199G p.P400R CTGTGCCCATTGC . 155.0 96.0 195.0 0.0 . 151 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195513058 195513058 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MUC4 NM_018406 exon2 c.T5393A p.V1798D GAGGAAACGTCGG . 1861.0 369.0 1820.0 1.0 . 1505 . . Atlas-SNP LDB2 9079 hgsc.bcm.edu hg19 4 16510279 16510279 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 LDB2_ENST00000441778,NS,carcinoma,0,1 LDB2 NM_001290 exon7 c.G770A p.R257Q TTTCTCCGTTTGG . 108.0 52.0 97.0 0.0 . 129 . . Atlas-SNP FRYL 285527 hgsc.bcm.edu hg19 4 48529665 48529665 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FRYL NM_015030 exon53 c.A7146G p.V2382V AGAAAATACAACC . 50.0 27.0 41.0 0.0 . 242 . . Atlas-SNP KIT 3815 hgsc.bcm.edu hg19 4 55593652 55593652 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 KIT,colon,carcinoma,0,5 KIT NM_000222 exon11 c.C1718A p.P573Q TAGACCCAACACA . 138.0 77.0 91.0 0.0 . 7396 . . Atlas-SNP MAPK10 5602 hgsc.bcm.edu hg19 4 86989078 86989078 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MAPK10 NM_002753 exon10 c.A833T p.Q278L CCTAGTTGTTCAA . 92.0 67.0 100.0 0.0 . 106 . . Atlas-SNP NEIL3 55247 hgsc.bcm.edu hg19 4 178231110 178231110 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NEIL3 NM_018248 exon1 c.G3C p.M1I AGAGATGGTGGAA . 264.0 15.0 273.0 0.0 . 89 . . Atlas-SNP NEIL3 55247 hgsc.bcm.edu hg19 4 178256896 178256896 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NEIL3 NM_018248 exon3 c.T333C p.Y111Y TAAATATAAAAAT . 91.0 79.0 108.0 0.0 . 89 . . Atlas-SNP SLC12A7 10723 hgsc.bcm.edu hg19 5 1053526 1053526 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC12A7 NM_006598 exon23 c.A3098G p.D1033G TGCGCATCCTGGG . 211.0 36.0 164.0 0.0 . 97 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13830159 13830159 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . DNAH5 NM_001369 exon37 c.T6225A p.P2075P AAATTCAGGGTTC . 233.0 44.0 163.0 0.0 . 868 . . Atlas-SNP FBXL7 23194 hgsc.bcm.edu hg19 5 15928539 15928539 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FBXL7 NM_012304 exon3 c.A668T p.Y223F GCTGTTACAATAT . 246.0 53.0 153.0 0.0 . 138 . . Atlas-SNP MYO10 4651 hgsc.bcm.edu hg19 5 16704767 16704767 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MYO10 NM_012334 exon22 c.A2197T p.K733X CCAGTTTCTGTTC . 64.0 16.0 58.0 0.0 . 198 . . Atlas-SNP MAP1B 4131 hgsc.bcm.edu hg19 5 71494849 71494849 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MAP1B NM_005909 exon5 c.T5667C p.Y1889Y TGACTATGAGTCT . 48.0 27.0 54.0 0.0 . 243 . . Atlas-SNP VCAN 1462 hgsc.bcm.edu hg19 5 82834673 82834673 + Missense_Mutation SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . VCAN NM_004385 exon8 c.G5851A p.E1951K GCAAAAGAAGAAA . 56.0 14.0 66.0 0.0 . 498 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89971058 89971058 + Splice_Site SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GPR98 NM_032119 exon24 c.5111-2A>T . TCCACTAGGCTTG . 59.0 23.0 82.0 0.0 . 605 . . Atlas-SNP TCF7 6932 hgsc.bcm.edu hg19 5 133480499 133480499 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TCF7 NM_201634 exon9 c.C742T p.P248S GGCTCGCCTAAGA . 107.0 38.0 218.0 0.0 . 81 . . Atlas-SNP PITX1 5307 hgsc.bcm.edu hg19 5 134364795 134364795 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PITX1 NM_002653 exon3 c.C619G p.P207A ACAGCGGGCTCAT . 122.0 46.0 193.0 0.0 . 31 . . Atlas-SNP PSD2 84249 hgsc.bcm.edu hg19 5 139189340 139189340 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PSD2 NM_032289 exon2 c.A315T p.A105A GCTGGCAGAGGGG . 59.0 32.0 90.0 0.0 . 88 . . Atlas-SNP ANKHD1 54882 hgsc.bcm.edu hg19 5 139909162 139909162 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ANKHD1 NM_017747 exon29 c.A6631T p.N2211Y CTTTTCAATCACT . 93.0 41.0 123.0 0.0 . 233 . . Atlas-SNP PCDHAC1 56135 hgsc.bcm.edu hg19 5 140308516 140308516 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PCDHAC1 NM_031882 exon1 c.A2039T p.Q680L CTGCCCAGAACTT . 52.0 24.0 79.0 0.0 . 141 . . Atlas-SNP HMGXB3 22993 hgsc.bcm.edu hg19 5 149431544 149431544 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . HMGXB3 NM_014983 exon20 c.A3668T p.D1223V CCTTCGACAATGC . 68.0 28.0 88.0 0.0 . 31 . . Atlas-SNP SLC36A3 285641 hgsc.bcm.edu hg19 5 150663626 150663626 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC36A3 NM_001145017 exon9 c.C1076A p.T359N TTGAGGGTGATGC . 111.0 49.0 145.0 0.0 . 54 . . Atlas-SNP MGAT1 4245 hgsc.bcm.edu hg19 5 180218676 180218676 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MGAT1 NM_001114617 exon3 c.G1296A p.A432A TGGGGGCGCCAGG . 213.0 96.0 282.0 0.0 . 48 . . Atlas-SNP ABHD16A 7920 hgsc.bcm.edu hg19 6 31660873 31660873 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ABHD16A NM_021160 exon7 c.A557T p.E186V AGGGGCTCTGGGC . 69.0 53.0 80.0 0.0 . 34 . . Atlas-SNP PSMB9 5698 hgsc.bcm.edu hg19 6 32826201 32826201 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PSMB9 NM_002800 exon5 c.A451T p.S151C TCCGGCAGCACCT . 75.0 31.0 94.0 0.0 . 16 . . Atlas-SNP DEF6 50619 hgsc.bcm.edu hg19 6 35280290 35280290 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . DEF6 NM_022047 exon4 c.A635T p.E212V ACCAGGAGCTCAT . 93.0 76.0 167.0 0.0 . 36 . . Atlas-SNP NCR2 9436 hgsc.bcm.edu hg19 6 41309647 41309647 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NCR2 NM_004828 exon3 c.T510C p.S170S TCCATCTACCATC . 63.0 50.0 106.0 0.0 . 44 . . Atlas-SNP FRK 2444 hgsc.bcm.edu hg19 6 116277657 116277657 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FRK NM_002031 exon5 c.A916T p.T306S ACTCTGTAATAAT . 31.0 12.0 63.0 0.0 . 78 . . Atlas-SNP HIVEP2 3097 hgsc.bcm.edu hg19 6 143092423 143092423 + Silent SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . HIVEP2 NM_006734 exon5 c.G3453T p.L1151L CAGGTGCAGTGGC . 91.0 35.0 88.0 0.0 . 225 . . Atlas-SNP TIAM2 26230 hgsc.bcm.edu hg19 6 155569180 155569180 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TIAM2 NM_012454 exon19 c.C3699T p.P1233P GAACCCCACCAAG . 83.0 69.0 125.0 0.0 . 161 . . Atlas-SNP CARD11 84433 hgsc.bcm.edu hg19 7 2984108 2984108 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CARD11 NM_032415 exon5 c.A422T p.Q141L TTCATCTGCTGCT . 79.0 33.0 102.0 0.0 . 339 . . Atlas-SNP SDK1 221935 hgsc.bcm.edu hg19 7 4188918 4188918 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SDK1 NM_152744 exon30 c.T4448A p.L1483H GAGAGCTCCTGGT . 54.0 16.0 75.0 0.0 . 361 . . Atlas-SNP SDK1 221935 hgsc.bcm.edu hg19 7 4201422 4201422 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SDK1 NM_152744 exon32 c.A4734T p.P1578P AGTTCCAGGAGAG . 90.0 39.0 134.0 0.0 . 361 . . Atlas-SNP ABCB5 340273 hgsc.bcm.edu hg19 7 20698148 20698148 + Missense_Mutation SNP G G T rs199505251 alternate_allele TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ABCB5 NM_001163941 exon14 c.G1556T p.G519V TGGTAGGGGAAAA . 25.0 11.0 55.0 0.0 . 357 . G|0.999;A|0.001 Atlas-SNP ABCB5 340273 hgsc.bcm.edu hg19 7 20762841 20762841 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ABCB5 NM_001163941 exon21 c.A2624T p.K875M CTGGAAAGGTAAA . 44.0 6.0 77.0 0.0 . 357 . . Atlas-SNP TBX20 57057 hgsc.bcm.edu hg19 7 35293206 35293206 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TBX20 NM_001077653 exon1 c.C26A p.P9H AGTTGGGGCTTGG . 29.0 12.0 46.0 0.0 . 96 . . Atlas-SNP GLI3 2737 hgsc.bcm.edu hg19 7 42088201 42088201 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GLI3 NM_000168 exon5 c.T568A p.F190I GGCTGAAGGGAGA . 167.0 55.0 240.0 0.0 . 312 . . Atlas-SNP POM121L12 285877 hgsc.bcm.edu hg19 7 53103631 53103631 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 POM121L12,NS,carcinoma,0,1 POM121L12 NM_182595 exon1 c.G267A p.P89P CAAGCCGCAGCGG . 29.0 15.0 22.0 1.0 . 146 . . Atlas-SNP ASNS 440 hgsc.bcm.edu hg19 7 97484710 97484710 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ASNS NM_133436 exon9 c.A1092T p.G364G TCCTTCTCCAGAG . 45.0 13.0 32.0 0.0 . 97 . . Atlas-SNP LMOD2 442721 hgsc.bcm.edu hg19 7 123302237 123302237 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LMOD2 NM_207163 exon2 c.T597A p.I199I AGTGATTGAGGAC . 85.0 38.0 97.0 0.0 . 62 . . Atlas-SNP LEP 3952 hgsc.bcm.edu hg19 7 127894794 127894794 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LEP NM_000230 exon3 c.T482A p.L161Q GGCAGCTGGACCT . 25.0 13.0 40.0 0.0 . 17 . . Atlas-SNP CNOT4 4850 hgsc.bcm.edu hg19 7 135095305 135095305 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CNOT4 NM_001190850 exon7 c.A781T p.K261X TATTTTTATCAAC . 63.0 30.0 78.0 0.0 . 146 . . Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141765270 141765270 + Splice_Site SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MGAM NM_004668 exon38 c.4618+2T>A . CATTGGTGCGTGG . 64.0 37.0 90.0 0.0 . 767 . . Atlas-SNP SSPO 23145 hgsc.bcm.edu hg19 7 149529876 149529876 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_198455 exon109 c.A15290T p.Q5097L AGAGCCAGTGTGA . 40.0 17.0 86.0 0.0 . . . . Atlas-SNP WDR60 55112 hgsc.bcm.edu hg19 7 158672638 158672638 + Silent SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . WDR60 NM_018051 exon5 c.A837G p.K279K TAGAAAAGAGAAA . 189.0 72.0 213.0 0.0 . 94 . . Atlas-SNP LZTS1 11178 hgsc.bcm.edu hg19 8 20112615 20112615 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LZTS1 NM_021020 exon1 c.C78T p.R26R GGACTTGCGCAGC . 105.0 27.0 99.0 0.0 . 72 . . Atlas-SNP C8orf58 541565 hgsc.bcm.edu hg19 8 22458397 22458397 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . C8orf58 NM_001013842 exon2 c.G43T p.G15W GCAGATGGGGCTG . 64.0 42.0 76.0 0.0 . 17 . . Atlas-SNP UNC5D 137970 hgsc.bcm.edu hg19 8 35542098 35542098 + Splice_Site SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . UNC5D NM_080872 exon6 c.752-2A>T . TCTCTCAGTGAAT . 85.0 16.0 109.0 0.0 . 393 . . Atlas-SNP CHD7 55636 hgsc.bcm.edu hg19 8 61765635 61765635 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CHD7 NM_017780 exon31 c.C6351T p.L2117L CATCCTCAATGAC . 182.0 50.0 176.0 0.0 . 534 . . Atlas-SNP TRPS1 7227 hgsc.bcm.edu hg19 8 116599393 116599393 + Missense_Mutation SNP A A C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TRPS1 NM_014112 exon5 c.T2535G p.N845K CTCCACATTGGGA . 117.0 20.0 51.0 0.0 . 516 . . Atlas-SNP LRRC6 23639 hgsc.bcm.edu hg19 8 133595953 133595953 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LRRC6 NM_012472 exon11 c.A1214T p.Q405L TTTGTTTGTTCTC . 289.0 44.0 95.0 0.0 . 58 . . Atlas-SNP PUF60 22827 hgsc.bcm.edu hg19 8 144899155 144899155 + Silent SNP G G A rs372944670 TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PUF60 NM_078480 exon11 c.C1305T p.S435S CTGCTCGCTCAGC . 128.0 10.0 111.0 0.0 . 26 . . Atlas-SNP EPPK1 83481 hgsc.bcm.edu hg19 8 144943295 144943295 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . EPPK1 NM_031308 exon1 c.A4127T p.Q1376L GCCGCCTGGGGCA . 100.0 41.0 51.0 0.0 . 199 . . Atlas-SNP SLC39A4 55630 hgsc.bcm.edu hg19 8 145640635 145640635 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC39A4 NM_130849 exon3 c.A643T p.S215C CCTCGCTGCTGTG . 273.0 34.0 161.0 0.0 . 54 . . Atlas-SNP SLC24A2 25769 hgsc.bcm.edu hg19 9 19786418 19786418 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC24A2 NM_001193288 exon1 c.A447T p.L149F AATGGCTAAGGCT . 33.0 27.0 31.0 0.0 . 93 . . Atlas-SNP TLE4 7091 hgsc.bcm.edu hg19 9 82333727 82333727 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TLE4 NM_007005 exon15 c.T1431A p.H477Q CCGGCATGCTCGC . 156.0 36.0 168.0 0.0 . 187 . . Atlas-SNP SPATA31C1 441452 hgsc.bcm.edu hg19 9 90535600 90535600 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_001145124 exon4 c.G778C p.D260H CCACTGGACACCG . 191.0 50.0 167.0 0.0 . . . . Atlas-SNP TMEM245 23731 hgsc.bcm.edu hg19 9 111853343 111853343 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_032012 exon5 c.A1009T p.R337X TTCGTCTGCCCAG . 90.0 57.0 66.0 0.0 . . . . Atlas-SNP C9orf84 158401 hgsc.bcm.edu hg19 9 114500592 114500592 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . C9orf84 NM_173521 exon10 c.T1193A p.I398K AAAAATATCTCAA . 63.0 29.0 43.0 0.0 . 207 . . Atlas-SNP HDHD3 81932 hgsc.bcm.edu hg19 9 116135994 116135994 + Missense_Mutation SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . HDHD3 NM_031219 exon2 c.C641T p.P214L GCCTGTGGGCCAA . 105.0 64.0 90.0 0.0 . 10 . . Atlas-SNP NCS1 23413 hgsc.bcm.edu hg19 9 132980139 132980139 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NCS1 NM_014286 exon3 c.A118T p.S40C TGCCCCAGTGGGC . 139.0 39.0 123.0 0.0 . 18 . . Atlas-SNP RAPGEF1 2889 hgsc.bcm.edu hg19 9 134525525 134525525 + Missense_Mutation SNP T T G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RAPGEF1 NM_198679 exon3 c.A309C p.Q103H CTGCCTTTGAGAC . 89.0 67.0 95.0 0.0 . 126 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 16877186 16877186 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CUBN NM_001081 exon64 c.A10189T p.R3397X AGTCTCTGTTGCA . 242.0 68.0 80.0 0.0 . 515 . . Atlas-SNP GPR158 57512 hgsc.bcm.edu hg19 10 25701321 25701321 + Silent SNP T T G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GPR158 NM_020752 exon4 c.T1254G p.L418L ACGACTTGCCATC . 296.0 82.0 115.0 0.0 . 255 . . Atlas-SNP PTEN 5728 hgsc.bcm.edu hg19 10 89712017 89712017 + Splice_Site SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 PTEN,NS,carcinoma,0,4 PTEN NM_000314 exon6 c.634+1G>T . CTTGCAGTAAGTG . 16.0 12.0 39.0 0.0 . 3652 . . Atlas-SNP OR51D1 390038 hgsc.bcm.edu hg19 11 4661967 4661967 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . OR51D1 NM_001004751 exon1 c.T947A p.L316H GGGTCCTCTGTAT . 100.0 25.0 67.0 0.0 . 49 . . Atlas-SNP EIF3F 8665 hgsc.bcm.edu hg19 11 8017529 8017529 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . EIF3F NM_003754 exon8 c.A1034T p.Q345L TCACACAGTCACA . 62.0 16.0 57.0 0.0 . 23 . . Atlas-SNP LRRC4C 57689 hgsc.bcm.edu hg19 11 40137322 40137322 + Missense_Mutation SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LRRC4C NM_001258419 exon7 c.T521C p.L174S CGGCGCAAAGAAG . 76.0 18.0 52.0 0.0 . 190 . . Atlas-SNP OR8K5 219453 hgsc.bcm.edu hg19 11 55926911 55926911 + Nonsense_Mutation SNP C C A rs376114385 alternate_allele TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . OR8K5 NM_001004058 exon1 c.G883T p.E295X CCTCTTCGTTTCT . 39.0 13.0 81.0 0.0 . 82 . . Atlas-SNP OR4D9 390199 hgsc.bcm.edu hg19 11 59283045 59283045 + Silent SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . OR4D9 NM_001004711 exon1 c.C660A p.V220V CACGGTCATCTTG . 78.0 36.0 94.0 0.0 . 47 . . Atlas-SNP IL18BP 10068 hgsc.bcm.edu hg19 11 71712350 71712350 + Silent SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . IL18BP NM_001145057 exon4 c.A339G p.R113R AGGCCGACTGTGG . 85.0 36.0 108.0 0.0 . 15 . . Atlas-SNP ATM 472 hgsc.bcm.edu hg19 11 108114838 108114838 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ATM NM_000051 exon6 c.T655A p.C219S ATTCAGTGTGCGA . 39.0 14.0 54.0 0.0 . 1657 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118347664 118347664 + Nonsense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MLL NM_001197104 exon4 c.C3301T p.R1101X GAAGAACGAGAAA . 121.0 44.0 151.0 0.0 . 548 . . Atlas-SNP CHEK1 1111 hgsc.bcm.edu hg19 11 125514071 125514071 + Nonsense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CHEK1 NM_001244846 exon10 c.A1009T p.K337X ATTGATAAATTGG . 77.0 39.0 66.0 0.0 . 44 . . Atlas-SNP KLRC4 8302 hgsc.bcm.edu hg19 12 10561527 10561527 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KLRC4 NM_013431 exon2 c.A270T p.T90T AACTATTGTTTTT . 317.0 180.0 344.0 0.0 . 23 . . Atlas-SNP NCKAP5L 57701 hgsc.bcm.edu hg19 12 50190491 50190491 + Silent SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NCKAP5L NM_001037806 exon8 c.T1152C p.G384G TGGGGTACCCCCA . 37.0 8.0 43.0 0.0 . 142 . . Atlas-SNP SP7 121340 hgsc.bcm.edu hg19 12 53723037 53723037 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SP7 NM_152860 exon2 c.T189A p.A63A TGGATAAGCATCC . 63.0 24.0 67.0 0.0 . 30 . . Atlas-SNP CALCOCO1 57658 hgsc.bcm.edu hg19 12 54118967 54118967 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CALCOCO1 NM_020898 exon2 c.A60T p.V20V CCGGGCTACATTG . 246.0 146.0 230.0 0.0 . 50 . . Atlas-SNP METTL1 4234 hgsc.bcm.edu hg19 12 58163625 58163625 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . METTL1 NM_005371 exon3 c.G389T p.G130V TGGAAGCCACCTG . 135.0 77.0 157.0 0.0 . 14 . . Atlas-SNP LGR5 8549 hgsc.bcm.edu hg19 12 71960645 71960645 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LGR5 NM_003667 exon11 c.A1023T p.S341S GATCTCATCTCTT . 176.0 91.0 125.0 0.0 . 103 . . Atlas-SNP USP44 84101 hgsc.bcm.edu hg19 12 95927304 95927304 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . USP44 NM_032147 exon2 c.T729A p.D243E TACTTTATCTTTT . 72.0 19.0 63.0 0.0 . 83 . . Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112685903 112685903 + Missense_Mutation SNP T T A rs374617773 alternate_allele TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_001109662 exon27 c.A3814T p.M1272L AAGGCATGTTGTT . 80.0 16.0 67.0 0.0 . . . . Atlas-SNP CCDC42B 387885 hgsc.bcm.edu hg19 12 113587689 113587689 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CCDC42B NM_001144872 exon1 c.C27T p.F9F ATATTTCCGACTG . 82.0 48.0 62.0 0.0 . 3 . . Atlas-SNP NOS1 4842 hgsc.bcm.edu hg19 12 117669901 117669901 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NOS1 NM_001204218 exon23 c.C3373G p.P1125A AGGGCGGGAGGCG . 158.0 54.0 190.0 0.0 . 240 . . Atlas-SNP PAN3 255967 hgsc.bcm.edu hg19 13 28748529 28748529 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PAN3 NM_175854 exon2 c.A551T p.Q184L TGATGCAGGTATC . 29.0 20.0 33.0 0.0 . 123 . . Atlas-SNP USPL1 10208 hgsc.bcm.edu hg19 13 31232186 31232186 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . USPL1 NM_005800 exon9 c.G1972T p.V658F TCCCAAGTTGTAA . 72.0 4.0 45.0 0.0 . 82 . . Atlas-SNP N4BP2L2 10443 hgsc.bcm.edu hg19 13 33092036 33092036 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . N4BP2L2 NM_014887 exon6 c.A1655G p.H552R CTTTTGTGTGATG . 77.0 43.0 74.0 0.0 . 90 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35923307 35923307 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NBEA NM_015678 exon37 c.T5966A p.L1989X TTATTTTGAACAG . 102.0 30.0 130.0 0.0 . 340 . . Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77763108 77763108 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MYCBP2 NM_015057 exon30 c.C4229A p.S1410Y GCAAAAGACCTCT . 54.0 4.0 57.0 0.0 . 1029 . . Atlas-SNP ABCC4 10257 hgsc.bcm.edu hg19 13 95822825 95822825 + Missense_Mutation SNP C C G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ABCC4 NM_005845 exon14 c.G1785C p.Q595H GAGGTACTGCAAC . 44.0 19.0 47.0 0.0 . 248 . . Atlas-SNP FSCB 84075 hgsc.bcm.edu hg19 14 44975744 44975744 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FSCB NM_032135 exon1 c.A447G p.E149E CACTTTTTCTACA . 167.0 107.0 146.0 0.0 . 173 . . Atlas-SNP PLEKHG3 26030 hgsc.bcm.edu hg19 14 65209799 65209799 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PLEKHG3 NM_015549 exon15 c.A2870T p.Q957L CACCACAGCGTTT . 73.0 22.0 92.0 0.0 . 89 . . Atlas-SNP CEP128 145508 hgsc.bcm.edu hg19 14 80997175 80997175 + Missense_Mutation SNP A A C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CEP128 NM_152446 exon21 c.T2936G p.L979R TCTTCTAGTAGGC . 68.0 38.0 71.0 0.0 . 146 . . Atlas-SNP CCDC88C 440193 hgsc.bcm.edu hg19 14 91787522 91787522 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CCDC88C NM_001080414 exon13 c.A1469T p.E490V CTCTCCTCCAACA . 97.0 22.0 110.0 0.0 . 192 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54306838 54306838 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . UNC13C NM_001080534 exon1 c.T1738A p.S580T CTCCTGTCATCTT . 35.0 28.0 44.0 0.0 . 674 . . Atlas-SNP MESDC1 59274 hgsc.bcm.edu hg19 15 81295203 81295203 + Silent SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MESDC1 NM_022566 exon1 c.G591T p.A197A GGACGCGTGCGCC . 9.0 7.0 2.0 0.0 . 7 . . Atlas-SNP CLCN7 1186 hgsc.bcm.edu hg19 16 1511413 1511413 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CLCN7 NM_001287 exon4 c.A344T p.N115I GTGTGATTGATCC . 59.0 26.0 68.0 0.0 . 53 . . Atlas-SNP GRIN2A 2903 hgsc.bcm.edu hg19 16 10032379 10032379 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GRIN2A NM_000833 exon4 c.A444T p.G148G GGACGCTCCAAAC . 29.0 18.0 26.0 0.0 . 366 . . Atlas-SNP ERN2 10595 hgsc.bcm.edu hg19 16 23711862 23711862 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ERN2 NM_033266 exon13 c.A1667T p.E556V TCACCTTCAGGGT . 59.0 34.0 58.0 0.0 . 131 . . Atlas-SNP SLC52A1 55065 hgsc.bcm.edu hg19 17 4936947 4936947 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_017986 exon3 c.T837A p.G279G GAAGGCACCATGG . 84.0 72.0 108.0 0.0 . . . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578461 7578461 + Missense_Mutation SNP C C A rs121912654 TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 TP53_ENST00000545858,NS,carcinoma,+1,5 TP53 NM_000546 exon5 c.G469T p.V157F CGCGGACGCGGGT . 82.0 61.0 199.0 2.0 . 33396 . . Atlas-SNP ZNF286A 57335 hgsc.bcm.edu hg19 17 15619693 15619693 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ZNF286A NM_020652 exon6 c.A655T p.T219S TTCCATACACTTG . 96.0 49.0 86.0 0.0 . 58 . . Atlas-SNP RHBDL3 162494 hgsc.bcm.edu hg19 17 30616020 30616020 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RHBDL3 NM_138328 exon4 c.A504T p.T168T GATCACAGTCACG . 180.0 106.0 246.0 0.0 . 49 . . Atlas-SNP MRPL45 84311 hgsc.bcm.edu hg19 17 36478426 36478426 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MRPL45 NM_032351 exon8 c.A869T p.E290V AACCAGAAGAAGA . 50.0 11.0 86.0 0.0 . 27 . . Atlas-SNP KIF19 124602 hgsc.bcm.edu hg19 17 72351437 72351437 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KIF19 NM_153209 exon20 c.T2983C p.S995P GGATGCTCCCGGC . 53.0 10.0 52.0 0.0 . 102 . . Atlas-SNP GALK1 2584 hgsc.bcm.edu hg19 17 73760089 73760089 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GALK1 NM_000154 exon2 c.G244T p.A82S CATCGGCACCCTC . 57.0 17.0 69.0 0.0 . 17 . . Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80049390 80049390 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FASN NM_004104 exon9 c.G1200A p.V400V GATGTGCACGTTG . 128.0 36.0 157.0 0.0 . 154 . . Atlas-SNP MC2R 4158 hgsc.bcm.edu hg19 18 13885429 13885429 + Missense_Mutation SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MC2R NM_000529 exon2 c.T89C p.I30T AAAAATATCTCCT . 65.0 23.0 62.0 0.0 . 78 . . Atlas-SNP ASXL3 80816 hgsc.bcm.edu hg19 18 31320038 31320038 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ASXL3 NM_030632 exon11 c.A2670T p.T890T AGGGACAGATAAT . 50.0 21.0 53.0 0.0 . 405 . . Atlas-SNP MAP2K2 5605 hgsc.bcm.edu hg19 19 4110509 4110509 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 MAP2K2_ENST00000262948,right_upper_lobe,carcinoma,0,2 MAP2K2 NM_030662 exon3 c.A448T p.M150L TCACCATGTGTTC . 17.0 8.0 59.0 0.0 . 72 . . Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23543010 23543010 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ZNF91 NM_003430 exon4 c.A2771T p.H924L GTAAGGTGTGAAG . 28.0 9.0 22.0 0.0 . 349 . . Atlas-SNP C19orf69 100170765 hgsc.bcm.edu hg19 19 41949136 41949136 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . C19orf69 NM_001130514 exon1 c.C62A p.P21H CACCCCCCCAGGC . 24.0 10.0 26.0 0.0 . 4 . . Atlas-SNP NUP62 23636 hgsc.bcm.edu hg19 19 50412454 50412454 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NUP62 NM_153719 exon3 c.A611G p.Q204R GCTGGCTGTGTGG . 86.0 38.0 106.0 0.0 . 50 . . Atlas-SNP ZNF581 51545 hgsc.bcm.edu hg19 19 56156253 56156253 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ZNF581 NM_016535 exon2 c.A316T p.S106C CGACACAGCATCA . 170.0 85.0 229.0 0.0 . 13 . . Atlas-SNP ZNF835 90485 hgsc.bcm.edu hg19 19 57175003 57175003 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ZNF835 NM_001005850 exon2 c.T1564A p.C522S GTTGACAGGTTTC . 143.0 56.0 188.0 0.0 . 106 . . Atlas-SNP HSPA12B 116835 hgsc.bcm.edu hg19 20 3732438 3732438 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . HSPA12B NM_052970 exon13 c.G1686A p.L562L GCTGCTGGTTCGC . 5.0 5.0 2.0 0.0 . 43 . . Atlas-SNP RALGAPA2 57186 hgsc.bcm.edu hg19 20 20585826 20585826 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RALGAPA2 NM_020343 exon15 c.A2031T p.R677R TTTGCCTCGTTGC . 97.0 23.0 99.0 0.0 . 274 . . Atlas-SNP PMEPA1 56937 hgsc.bcm.edu hg19 20 56227157 56227157 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PMEPA1 NM_020182 exon4 c.A816T p.A272A GATGGCTGCGCTC . 37.0 12.0 27.0 0.0 . 29 . . Atlas-SNP TRMT2A 27037 hgsc.bcm.edu hg19 22 20102931 20102931 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TRMT2A NM_001257994 exon4 c.G748A p.G250R CCACCCCGACGCC . 58.0 21.0 75.0 0.0 . 34 . . Atlas-SNP ELFN2 114794 hgsc.bcm.edu hg19 22 37771020 37771020 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ELFN2 NM_052906 exon3 c.C555A p.N185K GAAGGGGTTGCCG . 118.0 43.0 181.0 0.0 . 89 . . Atlas-SNP NOL12 79159 hgsc.bcm.edu hg19 22 38082401 38082401 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NOL12 NM_024313 exon1 c.T2A p.M1K CTGCTATGGGCCG . 50.0 20.0 66.0 0.0 . 22 . . Atlas-SNP SMCR7L 54471 hgsc.bcm.edu hg19 22 39909580 39909580 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SMCR7L NM_019008 exon6 c.G644T p.W215L ACCTGTGGTCATG . 72.0 29.0 112.0 0.0 . 33 . . Atlas-SNP CHADL 150356 hgsc.bcm.edu hg19 22 41632548 41632548 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CHADL NM_138481 exon4 c.A2003T p.E668V ATGAGCTCCAGCT . 108.0 41.0 164.0 0.0 . 20 . . Atlas-SNP AKAP17A 8227 hgsc.bcm.edu hg19 X 1718233 1718233 + Nonsense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . AKAP17A NM_005088 exon4 c.G1060T p.E354X CTGCAGGAGAAGA . 65.0 40.0 178.0 0.0 . 46 . . Atlas-SNP ARX 170302 hgsc.bcm.edu hg19 X 25033712 25033712 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ARX NM_139058 exon1 c.A143T p.Q48L AAGCTCTGCGCGG . 48.0 40.0 132.0 0.0 . 19 . . Atlas-SNP ERCC6L 54821 hgsc.bcm.edu hg19 X 71425152 71425152 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ERCC6L NM_017669 exon2 c.C3465A p.N1155K GGACTTGTTTTCT . 49.0 39.0 59.0 0.0 . 98 . . Atlas-SNP BRWD3 254065 hgsc.bcm.edu hg19 X 79989645 79989645 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . BRWD3 NM_153252 exon11 c.A1058T p.E353V ATTTTCTCAGGAA . 63.0 6.0 81.0 0.0 . 251 . . Atlas-SNP CYLC1 1538 hgsc.bcm.edu hg19 X 83126557 83126557 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CYLC1 NM_021118 exon3 c.G156A p.L52L ACCTTTGAAATCA . 58.0 35.0 99.0 0.0 . 272 . . Atlas-SNP SAGE1 55511 hgsc.bcm.edu hg19 X 134994077 134994077 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SAGE1 NM_018666 exon18 c.A2486T p.Y829F TAAAATATCAATT . 37.0 31.0 55.0 0.0 . 160 . . Atlas-SNP LRRK1 79705 hgsc.bcm.edu hg19 15 101606245 101606246 + Frame_Shift_Del DEL GT GT - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LRRK1 NM_024652 exon32 c.5602_5603del p.1868_1868del . . 70.0 57.0 104.0 0.0 . 310 . . Atlas-Indel,Pindel P4HA1 5033 hgsc.bcm.edu hg19 10 74803644 74803660 + In_Frame_Del DEL CCTCTTAGATACTCTGT CCTCTTAGATACTCTGT - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 CCTCTTAGATACTCTGT CCTCTTAGATACTCTGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . P4HA1 NM_001142596 exon9 c.1134_1148del p.378_383del . . 24.0 13.0 76.0 0.0 . 86 . . Atlas-Indel,Pindel BAI3 577 hgsc.bcm.edu hg19 6 70040467 70040467 + Splice_Site DEL A A - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . BAI3 NM_001704 exon23 c.3102+2A>- . . . 40.0 14.0 42.0 0.0 . 451 . . Atlas-INDEL NME6 10201 hgsc.bcm.edu hg19 3 48339972 48339972 + Frame_Shift_Del DEL T T - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NME6 NM_005793 exon2 c.60delG p.Q20fs . . 97.0 27.0 109.0 0.0 . 14 . . Atlas-Indel,Pindel IPO7 10527 hgsc.bcm.edu hg19 11 9462080 9462080 + Frame_Shift_Del DEL A A - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . IPO7 NM_006391 exon23 c.2773delG p.E925fs . . 152.0 48.0 137.0 0.0 . 72 . . Atlas-Indel,Pindel SCN11A 11280 hgsc.bcm.edu hg19 3 38951586 38951586 + Frame_Shift_Del DEL G G - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SCN11A NM_014139 exon8 c.1073delA p.Q358fs . . 94.0 23.0 59.0 0.0 . 296 . . Atlas-Indel,Pindel FBLN2 2199 hgsc.bcm.edu hg19 3 13670764 13670765 + Frame_Shift_Del DEL GC GC - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 GC GC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FBLN2 NM_001165035 exon13 c.2813_2814del p.938_938del . . 106.0 54.0 108.0 0.0 . 137 . . Atlas-INDEL FBLN2 2199 hgsc.bcm.edu hg19 3 13670765 13670766 + Frame_Shift_Del DEL CG CG - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 CG CG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FBLN2 NM_001165035 exon13 c.2814_2815del p.938_939del . . 105.0 31.0 109.0 0.0 . 137 . . Pindel