Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CAMTA1 23261 hgsc.bcm.edu hg19 1 7797423 7797423 + Missense_Mutation SNP G G A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . CAMTA1 NM_015215 exon15 c.G3451A p.A1151T GGAATTGCCAGGT . 60.0 25.0 61.0 0.0 . 226 . . Atlas-SNP SPEN 23013 hgsc.bcm.edu hg19 1 16259330 16259330 + Missense_Mutation SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . SPEN NM_015001 exon11 c.G6595T p.A2199S GGCCTTGCCCCAG . 86.0 28.0 96.0 0.0 . 374 . . Atlas-SNP ALG6 29929 hgsc.bcm.edu hg19 1 63876884 63876884 + Missense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . ALG6 NM_013339 exon8 c.C562A p.L188I GACCTCCTAGGGT . 173.0 10.0 191.0 0.0 . 33 . . Atlas-SNP LRRIQ3 127255 hgsc.bcm.edu hg19 1 74649130 74649130 + Missense_Mutation SNP T T G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . LRRIQ3 NM_001105659 exon2 c.A239C p.H80P TTTCCATGGAGAT . 144.0 36.0 168.0 0.0 . 146 . . Atlas-SNP OLFM3 118427 hgsc.bcm.edu hg19 1 102302451 102302451 + Missense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 OLFM3_ENST00000338858,NS,carcinoma,0,2 OLFM3 NM_058170 exon2 c.G200T p.R67L AGTTGGCGAAGTT . 83.0 23.0 97.0 0.0 . 178 . . Atlas-SNP PRMT6 55170 hgsc.bcm.edu hg19 1 107600118 107600118 + Missense_Mutation SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . PRMT6 NM_018137 exon1 c.G781T p.A261S TCCCGCGCCGGCT . 27.0 15.0 22.0 0.0 . 55 . . Atlas-SNP CAPZA1 829 hgsc.bcm.edu hg19 1 113192075 113192075 + Missense_Mutation SNP A A T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . CAPZA1 NM_006135 exon3 c.A139T p.R47W CTCCTCAGGGAAG . 93.0 25.0 104.0 0.0 . 16 . . Atlas-SNP LCE5A 254910 hgsc.bcm.edu hg19 1 152484032 152484032 + Missense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 LCE5A,NS,carcinoma,0,1 LCE5A NM_178438 exon2 c.C22A p.Q8K AGCCAGCAGCAGT . 114.0 14.0 52.0 0.0 . 15 . . Atlas-SNP RAB25 57111 hgsc.bcm.edu hg19 1 156035802 156035802 + Silent SNP G G A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . RAB25 NM_020387 exon2 c.G144A p.E48E GGTTGAGTTCTCC . 94.0 4.0 44.0 0.0 . 18 . . Atlas-SNP ETV3 2117 hgsc.bcm.edu hg19 1 157095349 157095349 + Missense_Mutation SNP A A G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . ETV3 NM_001145312 exon5 c.T823C p.S275P TATAGGAGAAGAT . 219.0 85.0 102.0 0.0 . 50 . . Atlas-SNP CD55 1604 hgsc.bcm.edu hg19 1 207510136 207510136 + Missense_Mutation SNP A A C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . CD55 NM_001114752 exon7 c.A952C p.T318P ACCACCACAAAAA . 158.0 81.0 104.0 0.0 . 55 . . Atlas-SNP C2orf71 388939 hgsc.bcm.edu hg19 2 29296015 29296015 + Missense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . C2orf71 NM_001029883 exon1 c.G1113T p.W371C AAGGTCCCAGCTG . 103.0 42.0 99.0 0.0 . 146 . . Atlas-SNP NLRC4 58484 hgsc.bcm.edu hg19 2 32463205 32463205 + Silent SNP G G A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . NLRC4 NM_001199138 exon6 c.C2517T p.I839I ACCTAGGATTTTC . 87.0 20.0 88.0 0.0 . 165 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32640007 32640007 + Nonsense_Mutation SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . BIRC6 NM_016252 exon10 c.G1648T p.E550X AAGAGTGAAAAGA . 98.0 5.0 101.0 0.0 . 838 . . Atlas-SNP KIAA1211L 343990 hgsc.bcm.edu hg19 2 99449388 99449388 + Silent SNP G G A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 C2orf55,NS,carcinoma,0,1 . NM_207362 exon4 c.C312T p.D104D AGTAGCGTCCTGT . 53.0 9.0 56.0 0.0 . . . . Atlas-SNP UBXN4 23190 hgsc.bcm.edu hg19 2 136513213 136513213 + Missense_Mutation SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 UBXN4,NS,carcinoma,0,1 UBXN4 NM_014607 exon5 c.C460T p.L154F GCAGAGCTTTGTG . 31.0 12.0 32.0 0.0 . 54 . . Atlas-SNP PSMD14 10213 hgsc.bcm.edu hg19 2 162227718 162227718 + Missense_Mutation SNP C C G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . PSMD14 NM_005805 exon7 c.C347G p.P116R GTCACCCTGGCTT . 263.0 55.0 261.0 0.0 . 22 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210835632 210835632 + Missense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . UNC80 NM_032504 exon53 c.C8009A p.P2670H CACCACCTCTGCC . 254.0 47.0 240.0 0.0 . 280 . . Atlas-SNP CPS1 1373 hgsc.bcm.edu hg19 2 211471635 211471635 + Missense_Mutation SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 CPS1_ENST00000430249,colon,carcinoma,0,2 CPS1 NM_001122633 exon19 c.G2180T p.R727L TGTCCCGAAGCTC . 107.0 45.0 118.0 0.0 . 485 . . Atlas-SNP C2orf57 165100 hgsc.bcm.edu hg19 2 232458647 232458647 + Missense_Mutation SNP C C A rs375509340 alternate_allele TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . C2orf57 NM_152614 exon1 c.C985A p.R329S AGCTTGCGCTCGG . 42.0 11.0 39.0 0.0 . 35 . . Atlas-SNP NEU2 4759 hgsc.bcm.edu hg19 2 233899496 233899496 + Missense_Mutation SNP A A T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . NEU2 NM_005383 exon2 c.A872T p.Q291L CAGCCCAGTGGCT . 36.0 12.0 67.0 0.0 . 42 . . Atlas-SNP FANCD2 2177 hgsc.bcm.edu hg19 3 10128833 10128833 + Silent SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . FANCD2 NM_001018115 exon34 c.C3351T p.Y1117Y CCATTACTTGCAG . 152.0 44.0 134.0 0.0 . 253 . . Atlas-SNP TMF1 7110 hgsc.bcm.edu hg19 3 69097137 69097137 + Missense_Mutation SNP T T C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . TMF1 NM_007114 exon2 c.A719G p.N240S GGTGTATTGCTCT . 135.0 44.0 121.0 0.0 . 77 . . Atlas-SNP MYH15 22989 hgsc.bcm.edu hg19 3 108156479 108156479 + Missense_Mutation SNP T T G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . MYH15 NM_014981 exon26 c.A3203C p.E1068A TTGCCCTCCAGTT . 123.0 38.0 125.0 0.0 . 223 . . Atlas-SNP ACPP 55 hgsc.bcm.edu hg19 3 132061394 132061394 + Splice_Site SNP A A C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . ACPP NM_001099 exon6 c.556-2A>C . TGTTTCAGGATTT . 76.0 18.0 84.0 0.0 . 118 . . Atlas-SNP CLCN2 1181 hgsc.bcm.edu hg19 3 184070097 184070097 + Missense_Mutation SNP T T C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . CLCN2 NM_004366 exon21 c.A2294G p.E765G CTCATCTCGCCTT . 82.0 23.0 77.0 0.0 . 74 . . Atlas-SNP NAAA 27163 hgsc.bcm.edu hg19 4 76857288 76857288 + Missense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . NAAA NM_014435 exon3 c.G472T p.D158Y GCACATCCACTGT . 66.0 10.0 63.0 0.0 . 26 . . Atlas-SNP TSLP 85480 hgsc.bcm.edu hg19 5 110409217 110409217 + Silent SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . TSLP NM_033035 exon3 c.C225T p.C75C ACATTGCCTTACT . 136.0 18.0 98.0 0.0 . 22 . . Atlas-SNP TSSK1B 83942 hgsc.bcm.edu hg19 5 112769739 112769739 + Silent SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . TSSK1B NM_032028 exon1 c.C798A p.I266I GCTGAGGATCTCG . 62.0 14.0 44.0 0.0 . 89 . . Atlas-SNP PCDHGB5 56101 hgsc.bcm.edu hg19 5 140778538 140778538 + Missense_Mutation SNP T T C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . . NM_018925 exon1 c.T844C p.Y282H TCCTTCTACAGAA . 89.0 23.0 59.0 0.0 . . . . Atlas-SNP GPRIN1 114787 hgsc.bcm.edu hg19 5 176026296 176026296 + Missense_Mutation SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . GPRIN1 NM_052899 exon2 c.G540A p.M180I TGTAAACATGGGA . 134.0 12.0 103.0 0.0 . 77 . . Atlas-SNP TTBK1 84630 hgsc.bcm.edu hg19 6 43250675 43250675 + Nonsense_Mutation SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . TTBK1 NM_032538 exon14 c.G2197T p.E733X GGGAAGGAGGAAG . 66.0 25.0 56.0 0.0 . 124 . . Atlas-SNP SLC16A10 117247 hgsc.bcm.edu hg19 6 111540208 111540208 + Silent SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . SLC16A10 NM_018593 exon5 c.C1278T p.F426F CGGATTCATGTCT . 195.0 82.0 195.0 0.0 . 33 . . Atlas-SNP IL20RA 53832 hgsc.bcm.edu hg19 6 137323486 137323486 + Missense_Mutation SNP T T C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . IL20RA NM_014432 exon7 c.A871G p.I291V CATAAATCAAAAT . 73.0 20.0 71.0 0.0 . 54 . . Atlas-SNP EIF4H 7458 hgsc.bcm.edu hg19 7 73609125 73609125 + Missense_Mutation SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . EIF4H NM_022170 exon6 c.G524T p.R175L ACCGGCGAACAGG . 63.0 16.0 72.0 0.0 . 19 . . Atlas-SNP PHTF2 57157 hgsc.bcm.edu hg19 7 77551943 77551943 + Missense_Mutation SNP A A G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . PHTF2 NM_001127359 exon9 c.A865G p.T289A TAGGATACCCAAA . 60.0 17.0 86.0 0.0 . 104 . . Atlas-SNP ZNF804B 219578 hgsc.bcm.edu hg19 7 88963648 88963648 + Missense_Mutation SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . ZNF804B NM_181646 exon4 c.G1352T p.G451V AGGATGGCCACAC . 98.0 28.0 98.0 0.0 . 322 . . Atlas-SNP GNB2 2783 hgsc.bcm.edu hg19 7 100275413 100275413 + Missense_Mutation SNP A A G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . GNB2 NM_005273 exon7 c.A469G p.I157V AACCAAATCATCA . 56.0 16.0 46.0 0.0 . 29 . . Atlas-SNP NDUFA5 4698 hgsc.bcm.edu hg19 7 123197496 123197496 + Missense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 NDUFA5,bladder,carcinoma,0,1 NDUFA5 NM_005000 exon2 c.G28T p.G10C CAAGGCCAGTGGT . 103.0 38.0 96.0 0.0 . 6 . . Atlas-SNP POT1 25913 hgsc.bcm.edu hg19 7 124475442 124475442 + Missense_Mutation SNP G G A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . POT1 NM_015450 exon15 c.C1396T p.L466F TCGAGAGTTTGCA . 85.0 15.0 84.0 0.0 . 186 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 131925877 131925877 + Nonsense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . PLXNA4 NM_020911 exon5 c.G1552T p.E518X GGCACTCGCCGCA . 75.0 31.0 77.0 0.0 . 873 . . Atlas-SNP TAS2R38 5726 hgsc.bcm.edu hg19 7 141673256 141673256 + Silent SNP A A G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . TAS2R38 NM_176817 exon1 c.T234C p.L78L GTGGGTAAGCTGG . 69.0 28.0 73.0 0.0 . 51 . . Atlas-SNP NOBOX 135935 hgsc.bcm.edu hg19 7 144096113 144096113 + Missense_Mutation SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . NOBOX NM_001080413 exon8 c.C1399A p.P467T GCAGTGGCATCAG . 92.0 26.0 130.0 0.0 . 130 . . Atlas-SNP INSIG1 3638 hgsc.bcm.edu hg19 7 155093275 155093275 + Splice_Site SNP G G C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . INSIG1 NM_005542 exon3 c.413-1G>C . AAAACAGCTGTTG . 66.0 21.0 99.0 0.0 . 20 . . Atlas-SNP DCSTAMP 81501 hgsc.bcm.edu hg19 8 105361460 105361460 + Missense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . . NM_001257317 exon2 c.C680A p.T227N TTGGCACTGGCCT . 97.0 14.0 47.0 0.0 . . . . Atlas-SNP SUSD3 203328 hgsc.bcm.edu hg19 9 95846880 95846880 + Missense_Mutation SNP G G A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . SUSD3 NM_145006 exon5 c.G619A p.G207R GACCCTGGGATCC . 36.0 9.0 43.0 0.0 . 32 . . Atlas-SNP SURF4 6836 hgsc.bcm.edu hg19 9 136234218 136234218 + Missense_Mutation SNP T T A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . SURF4 NM_033161 exon2 c.A152T p.Q51L TCGCGCTGCTCGC . 38.0 8.0 38.0 0.0 . 20 . . Atlas-SNP COL5A1 1289 hgsc.bcm.edu hg19 9 137630606 137630606 + Silent SNP T T C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . COL5A1 NM_000093 exon11 c.T1446C p.P482P CGGACCTCCAGGA . 62.0 18.0 76.0 0.0 . 323 . . Atlas-SNP STAM 8027 hgsc.bcm.edu hg19 10 17730065 17730065 + Missense_Mutation SNP G G A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . STAM NM_003473 exon5 c.G337A p.V113I CTTATGGTTGAAT . 81.0 33.0 104.0 0.0 . 60 . . Atlas-SNP SVIL 6840 hgsc.bcm.edu hg19 10 29818698 29818698 + Missense_Mutation SNP G G A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . SVIL NM_021738 exon12 c.C2182T p.R728C GACGGCGTAGCCT . 59.0 11.0 58.0 0.0 . 226 . . Atlas-SNP CPN1 1369 hgsc.bcm.edu hg19 10 101825001 101825001 + Nonsense_Mutation SNP G G A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 CPN1,neck,malignant_melanoma,0,1 CPN1 NM_001308 exon4 c.C703T p.R235X CCCCTCGGACCCG . 33.0 8.0 47.0 0.0 . 62 . . Atlas-SNP TCF7L2 6934 hgsc.bcm.edu hg19 10 114910795 114910795 + Missense_Mutation SNP A A T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . TCF7L2 NM_001146283 exon9 c.A986T p.H329L CGCTACACACGAC . 84.0 19.0 104.0 0.0 . 298 . . Atlas-SNP ACCS 84680 hgsc.bcm.edu hg19 11 44096174 44096174 + Missense_Mutation SNP A A C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . ACCS NM_032592 exon5 c.A432C p.E144D GGAGGAAGTGGCC . 45.0 13.0 54.0 0.0 . 64 . . Atlas-SNP C11orf80 79703 hgsc.bcm.edu hg19 11 66568539 66568539 + Missense_Mutation SNP A A G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . C11orf80 NM_024650 exon8 c.A811G p.I271V AATGGAATTGCTC . 91.0 16.0 86.0 0.0 . 31 . . Atlas-SNP FOLR2 2350 hgsc.bcm.edu hg19 11 71932083 71932083 + Missense_Mutation SNP T T A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . FOLR2 NM_001113535 exon3 c.T320A p.L107Q CCAACCTGGGGCC . 60.0 24.0 64.0 0.0 . 29 . . Atlas-SNP TECTA 7007 hgsc.bcm.edu hg19 11 121036027 121036027 + Missense_Mutation SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 TECTA,NS,carcinoma,0,1 TECTA NM_005422 exon16 c.G5318T p.R1773L CCAACCGAACTTG . 203.0 40.0 208.0 0.0 . 329 . . Atlas-SNP OR10G7 390265 hgsc.bcm.edu hg19 11 123909699 123909699 + Missense_Mutation SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . OR10G7 NM_001004463 exon1 c.G10A p.A4T GGGTGGCGTTGGA . 133.0 49.0 178.0 0.0 . 103 . . Atlas-SNP IPO8 10526 hgsc.bcm.edu hg19 12 30789975 30789975 + Missense_Mutation SNP C C A rs61751231 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . IPO8 NM_006390 exon22 c.G2636T p.R879I AGTTGTCTAGTAG . 71.0 7.0 97.0 0.0 . 105 . C|0.992;T|0.008 Atlas-SNP NACA 4666 hgsc.bcm.edu hg19 12 57113603 57113603 + Missense_Mutation SNP G G T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . NACA NM_001113203 exon3 c.C1711A p.P571T AAGAAGGGGAATT . 117.0 11.0 128.0 0.0 . 131 . . Atlas-SNP KIAA1033 23325 hgsc.bcm.edu hg19 12 105519876 105519876 + Nonsense_Mutation SNP C C G rs190039477 bycluster;by1000genomes;alternate_allele TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . KIAA1033 NM_015275 exon11 c.C881G p.S294X TTCGGTCAATTTT . 113.0 38.0 159.0 0.0 . 83 . C|1.000;T|0.000 Atlas-SNP LAMP1 3916 hgsc.bcm.edu hg19 13 113960890 113960890 + Missense_Mutation SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . LAMP1 NM_005561 exon2 c.C152T p.S51L CCTTCTCAGTGAA . 83.0 48.0 78.0 0.0 . 41 . . Atlas-SNP CEP128 145508 hgsc.bcm.edu hg19 14 81251620 81251620 + Silent SNP A A C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . CEP128 NM_152446 exon14 c.T1830G p.A610A CAAGTGAGCTTTC . 143.0 16.0 193.0 0.0 . 146 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 33936690 33936690 + Silent SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . RYR3 NM_001243996 exon28 c.C3735A p.V1245V GTTTGTCAACGTG . 105.0 44.0 77.0 0.0 . 760 . . Atlas-SNP DISP2 85455 hgsc.bcm.edu hg19 15 40660976 40660976 + Missense_Mutation SNP A A T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . DISP2 NM_033510 exon8 c.A2663T p.Q888L GCACCCAGGACCT . 40.0 12.0 45.0 0.0 . 86 . . Atlas-SNP MAP1A 4130 hgsc.bcm.edu hg19 15 43815176 43815176 + Missense_Mutation SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . MAP1A NM_002373 exon4 c.C1505T p.P502L CTGAGCCCCAGAC . 118.0 40.0 116.0 0.0 . 189 . . Atlas-SNP GCOM1 145781 hgsc.bcm.edu hg19 15 57953696 57953696 + Missense_Mutation SNP C C G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . GCOM1 NM_001018090 exon11 c.C1168G p.Q390E ATACTGCAGCTTT . 157.0 38.0 135.0 0.0 . 66 . . Atlas-SNP MYO1E 4643 hgsc.bcm.edu hg19 15 59502718 59502718 + Missense_Mutation SNP T T G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . MYO1E NM_004998 exon13 c.A1357C p.K453Q CCACTTTGTTCTC . 97.0 32.0 119.0 0.0 . 99 . . Atlas-SNP CLPX 10845 hgsc.bcm.edu hg19 15 65443162 65443162 + Silent SNP T T C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . CLPX NM_006660 exon14 c.A1901G p.X634X ACAGTTTAGCTGT . 33.0 11.0 57.0 0.0 . 49 . . Atlas-SNP NEIL1 79661 hgsc.bcm.edu hg19 15 75641492 75641492 + Silent SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . NEIL1 NM_001256552 exon2 c.C504T p.S168S CATGTCCGGCTCT . 15.0 5.0 17.0 0.0 . 36 . . Atlas-SNP LINS 55180 hgsc.bcm.edu hg19 15 101112222 101112222 + Missense_Mutation SNP T T A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . LINS NM_001040616 exon6 c.A1271T p.H424L TGAAGATGAGGCT . 38.0 9.0 43.0 0.0 . 62 . . Atlas-SNP PKD1 5310 hgsc.bcm.edu hg19 16 2158258 2158258 + Missense_Mutation SNP T T C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . PKD1 NM_000296 exon15 c.A6910G p.T2304A CCTGTGTCGAAGC . 21.0 8.0 28.0 0.0 . 184 . . Atlas-SNP ANKRD11 29123 hgsc.bcm.edu hg19 16 89352532 89352532 + Silent SNP C C T rs149525788 alternate_allele TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . ANKRD11 NM_001256183 exon8 c.G807A p.T269T CAGCGGCGTCTCG . 22.0 10.0 32.0 0.0 . 195 . C|1.000;G|0.000 Atlas-SNP PSMB6 5694 hgsc.bcm.edu hg19 17 4701710 4701710 + Missense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . PSMB6 NM_002798 exon6 c.C713A p.P238H TACCACCCGCCTG . 37.0 14.0 57.0 0.0 . 20 . . Atlas-SNP EIF5A 1984 hgsc.bcm.edu hg19 17 7213030 7213030 + Missense_Mutation SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 EIF5A_ENST00000336452,NS,carcinoma,0,3 EIF5A NM_001143760 exon2 c.C166T p.R56C GCATTACGTAAGA . 26.0 17.0 52.0 0.0 . 28 . . Atlas-SNP COX10 1352 hgsc.bcm.edu hg19 17 13980195 13980195 + Silent SNP A A G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . COX10 NM_001303 exon3 c.A321G p.L107L CAGCCTATCTTTG . 102.0 44.0 147.0 0.0 . 36 . . Atlas-SNP DGKE 8526 hgsc.bcm.edu hg19 17 54925299 54925299 + Missense_Mutation SNP A A G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . DGKE NM_003647 exon5 c.A761G p.K254R TAACTAAAACTCC . 52.0 12.0 52.0 0.0 . 47 . . Atlas-SNP CLTC 1213 hgsc.bcm.edu hg19 17 57758348 57758348 + Missense_Mutation SNP G G C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . CLTC NM_004859 exon19 c.G2995C p.D999H ACTGCAGACCTTC . 136.0 43.0 134.0 0.0 . 124 . . Atlas-SNP TANC2 26115 hgsc.bcm.edu hg19 17 61476233 61476233 + Nonsense_Mutation SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . TANC2 NM_025185 exon17 c.C3067T p.R1023X GTAGAGCGAGCAC . 136.0 43.0 126.0 0.0 . 266 . . Atlas-SNP AFMID 125061 hgsc.bcm.edu hg19 17 76183502 76183502 + Silent SNP G G A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . AFMID NM_001145526 exon1 c.G51A p.K17K GAAGAAGATGTCT . 47.0 20.0 49.0 0.0 . 38 . . Atlas-SNP EMILIN2 84034 hgsc.bcm.edu hg19 18 2891529 2891529 + Silent SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . EMILIN2 NM_032048 exon4 c.C1404T p.C468C ACATTGCTTTTAC . 99.0 42.0 89.0 0.0 . 97 . . Atlas-SNP RANBP3 8498 hgsc.bcm.edu hg19 19 5931460 5931460 + Silent SNP T T C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . RANBP3 NM_007322 exon8 c.A648G p.A216A TCTCCATGCAGCA . 39.0 19.0 66.0 0.0 . 36 . . Atlas-SNP PKN1 5585 hgsc.bcm.edu hg19 19 14574553 14574553 + Missense_Mutation SNP A A C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . PKN1 NM_213560 exon10 c.A1512C p.Q504H GCAGCAAGGTGAG . 97.0 32.0 94.0 0.0 . 99 . . Atlas-SNP NOTCH3 4854 hgsc.bcm.edu hg19 19 15300099 15300099 + Missense_Mutation SNP C C G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . NOTCH3 NM_000435 exon7 c.G1177C p.D393H ACTCGTCCACATC . 33.0 12.0 39.0 0.0 . 340 . . Atlas-SNP ZNF98 148198 hgsc.bcm.edu hg19 19 22575694 22575694 + Missense_Mutation SNP A A T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . ZNF98 NM_001098626 exon4 c.T343A p.C115S GTCCACATTTTTT . 284.0 105.0 323.0 1.0 . 230 . . Atlas-SNP SIPA1L3 23094 hgsc.bcm.edu hg19 19 38633246 38633246 + Silent SNP A A G novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . SIPA1L3 NM_015073 exon12 c.A3429G p.V1143V CACAGTATCACCA . 27.0 7.0 32.0 0.0 . 150 . . Atlas-SNP PRMT1 3276 hgsc.bcm.edu hg19 19 50187272 50187272 + Nonsense_Mutation SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . PRMT1 NM_001536 exon6 c.C501A p.C167X CTACTGCCTCTTC . 87.0 22.0 90.0 0.0 . 31 . . Atlas-SNP MICAL3 57553 hgsc.bcm.edu hg19 22 18374289 18374289 + Silent SNP G G C novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . MICAL3 NM_015241 exon12 c.C1656G p.A552A ACAAAGGGCCAAG . 170.0 56.0 169.0 0.0 . 53 . . Atlas-SNP TNRC6B 23112 hgsc.bcm.edu hg19 22 40662452 40662452 + Nonsense_Mutation SNP C C T novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 TNRC6B_ENST00000454349,NS,carcinoma,0,1 TNRC6B NM_001162501 exon5 c.C2218T p.Q740X CCCAATCAAGGAT . 112.0 54.0 49.0 0.0 . 195 . . Atlas-SNP HCFC1 3054 hgsc.bcm.edu hg19 X 153224782 153224782 + Silent SNP C C A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . HCFC1 NM_005334 exon9 c.G1605T p.T535T CCTCACCGTTCCC . 43.0 26.0 45.0 0.0 . 284 . . Atlas-SNP FAM65B 9750 hgsc.bcm.edu hg19 6 24847845 24847845 + Frame_Shift_Del DEL G G - novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . FAM65B NM_014722 exon13 c.1153delA p.K385fs . . 36.0 14.0 38.0 0.0 . 134 . . Atlas-INDEL ROBO1 6091 hgsc.bcm.edu hg19 3 79639035 79639036 + Frame_Shift_Ins INS - - A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . ROBO1 NM_002941 exon2 c.27_28insT p.L9fs . . 97.0 12.0 84.0 0.0 . 833 . . Atlas-INDEL ZFHX4 79776 hgsc.bcm.edu hg19 8 77766040 77766041 + Frame_Shift_Ins INS - - A novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . ZFHX4 NM_024721 exon10 c.6883_6884insA p.E2295fs . . 139.0 67.0 94.0 0.0 . 878 . . Atlas-INDEL BCKDK 10295 hgsc.bcm.edu hg19 16 31121012 31121012 + Frame_Shift_Del DEL C C - novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . BCKDK NM_005881 exon4 c.282delG p.L94fs . . 77.0 24.0 80.0 0.0 . 52 . . Atlas-Indel,Pindel CYB5A 1528 hgsc.bcm.edu hg19 18 71959015 71959027 + Frame_Shift_Del DEL GTGGTGCAGGATC GTGGTGCAGGATC - novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 GTGGTGCAGGATC GTGGTGCAGGATC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . CYB5A NM_001914 exon1 c.85_97del p.29_33del . . 61.0 13.0 52.0 0.0 . 9 . . Atlas-Indel,Pindel LMCD1 29995 hgsc.bcm.edu hg19 3 8574486 8574524 + In_Frame_Del DEL TCGGGCTTCGAGCCACATTCATGGAGGTAACAGATTTTG TCGGGCTTCGAGCCACATTCATGGAGGTAACAGATTTTG - novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 TCGGGCTTCGAGCCACATTCATGGAGGTAACAGATTTTG TCGGGCTTCGAGCCACATTCATGGAGGTAACAGATTTTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . LMCD1 NM_014583 exon2 c.105_131del p.35_44del . . 82.0 14.0 153.0 0.0 . 38 . . Atlas-Indel,Pindel EIF3E 3646 hgsc.bcm.edu hg19 8 109229677 109229726 + Frame_Shift_Del DEL TGCATTAAGATATCTAAGAAAAAATATAAAAGTTATTTAATAACTTACCC TGCATTAAGATATCTAAGAAAAAATATAAAAGTTATTTAATAACTTACCC - novel TCGA-CC-A3MC-01A-11D-A22F-10 TCGA-CC-A3MC-10A-01D-A22F-10 TGCATTAAGATATCTAAGAAAAAATATAAAAGTTATTTAATAACTTACCC TGCATTAAGATATCTAAGAAAAAATATAAAAGTTATTTAATAACTTACCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 53285fbd-271b-4966-99a6-be108d4ca51c b6adfc43-1baa-4942-bf7d-41745f3c0f90 . EIF3E NM_001568 exon8 c.723_736del p.241_246del . . 19.0 15.0 12.0 0.0 . 73 . . Pindel