Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm SLC2A7 155184 hgsc.bcm.edu hg19 1 9074919 9074919 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLC2A7 NM_207420 exon7 c.A724G p.R242G TCAGCCTCCTCAG . 37.0 4.0 17.0 0.0 . 56 . . Atlas-SNP VPS13D 55187 hgsc.bcm.edu hg19 1 12403094 12403094 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . VPS13D NM_015378 exon42 c.A8871G p.G2957G AAGAGGAAAGTTA . 62.0 4.0 61.0 0.0 . 316 . . Atlas-SNP SPEN 23013 hgsc.bcm.edu hg19 1 16254901 16254901 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPEN NM_015001 exon11 c.T2166C p.I722I GCCGATTGAACGA . 95.0 4.0 144.0 0.0 . 374 . . Atlas-SNP EIF4G3 8672 hgsc.bcm.edu hg19 1 21176020 21176020 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EIF4G3 NM_001198801 exon27 c.A3716G p.K1239R TCTGGTTTTGCTA . 84.0 4.0 151.0 0.0 . 300 . . Atlas-SNP EIF4G3 8672 hgsc.bcm.edu hg19 1 21221985 21221985 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EIF4G3 NM_001198802 exon15 c.A1859G p.K620R GTAGGCTTCCAGG . 67.0 4.0 86.0 0.0 . 300 . . Atlas-SNP MACF1 23499 hgsc.bcm.edu hg19 1 39751339 39751339 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MACF1 NM_012090 exon15 c.C1432A p.Q478K TACATTCAGGAGT . 194.0 153.0 257.0 0.0 . 909 . . Atlas-SNP TMCO2 127391 hgsc.bcm.edu hg19 1 40713792 40713792 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TMCO2 NM_001008740 exon1 c.C127T p.L43L TTGGGACTATTAG . 77.0 4.0 104.0 0.0 . 23 . . Atlas-SNP SZT2 23334 hgsc.bcm.edu hg19 1 43890875 43890875 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SZT2 NM_015284 exon18 c.A2642G p.D881G CCAAAGACAGGTG . 77.0 5.0 125.0 0.0 . 383 . . Atlas-SNP DOCK7 85440 hgsc.bcm.edu hg19 1 62941000 62941000 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DOCK7 NM_001271999 exon46 c.T5951C p.V1984A ATAGCAACTTCAA . 134.0 6.0 199.0 0.0 . 184 . . Atlas-SNP ROR1 4919 hgsc.bcm.edu hg19 1 64605903 64605903 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ROR1 NM_001083592 exon6 c.T722C p.V241A CATCCGTCCCAAA . 116.0 5.0 162.0 0.0 . 113 . . Atlas-SNP C1orf173 127254 hgsc.bcm.edu hg19 1 75078418 75078418 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . C1orf173 NM_001002912 exon9 c.T1076C p.V359A CTGTTCACCTGCA . 61.0 5.0 68.0 0.0 . 380 . . Atlas-SNP TYW3 127253 hgsc.bcm.edu hg19 1 75199081 75199081 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TYW3 NM_001162916 exon1 c.C153T p.G51G CGCTGGCCGCATC . 43.0 5.0 62.0 0.0 . 36 . . Atlas-SNP CDC7 8317 hgsc.bcm.edu hg19 1 91978625 91978625 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CDC7 NM_001134419 exon7 c.G583A p.V195I GCCTTGGTAGACT . 73.0 4.0 166.0 0.0 . 74 . . Atlas-SNP CDC7 8317 hgsc.bcm.edu hg19 1 91978829 91978829 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CDC7 NM_001134419 exon7 c.G787T p.A263S ACAAATGCACAAA . 125.0 20.0 192.0 0.0 . 74 . . Atlas-SNP LPPR4 0 hgsc.bcm.edu hg19 1 99771896 99771896 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 LPPR4,NS,carcinoma,0,1 LPPR4 NM_014839 exon7 c.A1622G p.Q541R AGACTCAGGAAAA . 36.0 2.0 56.0 0.0 . 143 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103481281 103481281 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . COL11A1 NM_080629 exon12 c.T1467C p.P489P TAAGCCAGGACGT . 97.0 4.0 163.0 0.0 . 972 . . Atlas-SNP VAV3 10451 hgsc.bcm.edu hg19 1 108292166 108292166 + Missense_Mutation SNP T T A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . VAV3 NM_006113 exon14 c.A1310T p.D437V TAGTTATCACCTT . 57.0 4.0 108.0 0.0 . 176 . . Atlas-SNP HENMT1 113802 hgsc.bcm.edu hg19 1 109191529 109191529 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HENMT1 NM_144584 exon8 c.A841G p.S281G TTAAGCTTTCCAC . 63.0 4.0 97.0 0.0 . 38 . . Atlas-SNP AMPD2 271 hgsc.bcm.edu hg19 1 110173318 110173318 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AMPD2 NM_004037 exon17 c.A2333G p.E778G TGATGGAGGAGTA . 68.0 4.0 94.0 0.0 . 75 . . Atlas-SNP PTPN22 26191 hgsc.bcm.edu hg19 1 114367766 114367766 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 PTPN22,NS,carcinoma,0,1 PTPN22 NM_015967 exon19 c.A2279G p.K760R TTACTCTTTTTCA . 53.0 3.0 132.0 0.0 . 90 . . Atlas-SNP NOTCH2 4853 hgsc.bcm.edu hg19 1 120458101 120458101 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NOTCH2 NM_024408 exon34 c.T7244C p.L2415P GGTGTCAGGTAGG . 108.0 5.0 150.0 0.0 . 348 . . Atlas-SNP SETDB1 9869 hgsc.bcm.edu hg19 1 150933423 150933423 + Nonsense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SETDB1 NM_012432 exon16 c.C2885G p.S962X CTCCCTCAATCCC . 203.0 14.0 140.0 0.0 . 204 . . Atlas-SNP LMNA 4000 hgsc.bcm.edu hg19 1 156108485 156108485 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . LMNA NM_170707 exon11 c.C1905T p.G635G GGGTGGCAGCTTC . 242.0 50.0 192.0 0.0 . 31 . . Atlas-SNP CD1D 912 hgsc.bcm.edu hg19 1 158151417 158151417 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CD1D NM_001766 exon3 c.C234G p.D78E CAGCGACCAGCAG . 54.0 5.0 50.0 0.0 . 60 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158646052 158646052 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPTA1 NM_003126 exon8 c.A991G p.T331A AAAGTGTCAGCTT . 148.0 6.0 128.0 0.0 . 720 . . Atlas-SNP OR6K2 81448 hgsc.bcm.edu hg19 1 158669522 158669522 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OR6K2 NM_001005279 exon1 c.T921C p.G307G AGCTTGACCTATG . 94.0 4.0 104.0 0.0 . 104 . . Atlas-SNP ITLN2 142683 hgsc.bcm.edu hg19 1 160922449 160922449 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ITLN2 NM_080878 exon3 c.A154G p.S52G TGCAGCTTCTAGG . 92.0 4.0 80.0 0.0 . 35 . . Atlas-SNP FMO1 2326 hgsc.bcm.edu hg19 1 171236701 171236701 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FMO1 NM_002021 exon3 c.G152A p.R51K AAGGCAGAGCCAG . 191.0 46.0 124.0 0.0 . 79 . . Atlas-SNP TNN 63923 hgsc.bcm.edu hg19 1 175067580 175067580 + Silent SNP T T G rs61747978 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TNN NM_022093 exon9 c.T1968G p.S656S CACCTCTGCTGGT . 656.0 58.0 277.0 0.0 . 297 . T|0.981;C|0.019 Atlas-SNP FAM5B 57795 hgsc.bcm.edu hg19 1 177247856 177247856 + Silent SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM5B NM_021165 exon7 c.A1170T p.L390L GATCCTACGCCGG . 116.0 49.0 117.0 0.0 . 191 . . Atlas-SNP SEC16B 89866 hgsc.bcm.edu hg19 1 177901667 177901667 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SEC16B NM_033127 exon24 c.A2970G p.G990G AGCTGCTCCCCCG . 143.0 6.0 130.0 0.0 . 92 . . Atlas-SNP QSOX1 5768 hgsc.bcm.edu hg19 1 180163522 180163522 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . QSOX1 NM_002826 exon11 c.T1463C p.L488P CTCGCCTTGCAGG . 98.0 5.0 130.0 0.0 . 79 . . Atlas-SNP TPR 7175 hgsc.bcm.edu hg19 1 186340129 186340129 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TPR NM_003292 exon3 c.T303C p.I101I CTGAGCAATTTCA . 84.0 4.0 102.0 0.0 . 441 . . Atlas-SNP C1orf27 54953 hgsc.bcm.edu hg19 1 186375351 186375351 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . C1orf27 NM_017847 exon12 c.T1137C p.D379D GTTGGATCACACA . 73.0 4.0 79.0 0.0 . 41 . . Atlas-SNP NR5A2 2494 hgsc.bcm.edu hg19 1 199997033 199997033 + Missense_Mutation SNP C C T rs142187332 TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NR5A2 NM_003822 exon1 c.A58T p.M20L CTTACACCTATTG . 71.0 4.0 56.0 0.0 . 83 . C|1.000;T|0.000 Atlas-SNP CR1 1378 hgsc.bcm.edu hg19 1 207679429 207679429 + Splice_Site SNP G G A rs199647026 TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CR1 NM_000573 exon2 c.301+1G>A . GCAGACGTAAGTA . 117.0 30.0 139.0 0.0 . 354 . . Atlas-SNP RCOR3 55758 hgsc.bcm.edu hg19 1 211486825 211486825 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RCOR3 NM_001136224 exon11 c.T1135C p.S379P ATCCACTCCAACA . 127.0 6.0 122.0 0.0 . 51 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216373462 216373462 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . USH2A NM_007123 exon17 c.T3318C p.S1106S TTGAATACCTGAA . 17.0 10.0 41.0 0.0 . 1168 . . Atlas-SNP EPHX1 2052 hgsc.bcm.edu hg19 1 226030103 226030103 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EPHX1 NM_001136018 exon7 c.C968A p.A323D TGGCTGCCTATAT . 111.0 53.0 85.0 0.0 . 57 . . Atlas-SNP LYST 1130 hgsc.bcm.edu hg19 1 235945311 235945311 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 LYST,NS,carcinoma,0,1 LYST NM_000081 exon15 c.A4939G p.M1647V CAATCATGCAAAA . 100.0 4.0 90.0 0.0 . 370 . . Atlas-SNP GPR137B 7107 hgsc.bcm.edu hg19 1 236306000 236306000 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 GPR137B_ENST00000366591,NS,carcinoma,0,2 GPR137B NM_003272 exon1 c.C78T p.N26N CCGCAACGACTCG . 27.0 2.0 36.0 0.0 . 57 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237540721 237540721 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RYR2 NM_001035 exon8 c.T562C p.S188P GTGTCCTCTGAAA . 73.0 4.0 89.0 0.0 . 1273 . . Atlas-SNP CHRM3 1131 hgsc.bcm.edu hg19 1 240072218 240072218 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CHRM3 NM_000740 exon5 c.G1467A p.A489A GAAAGCGGCCCAG . 147.0 36.0 148.0 0.0 . 118 . . Atlas-SNP COLEC11 78989 hgsc.bcm.edu hg19 2 3691494 3691494 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . COLEC11 NM_001255985 exon8 c.T644C p.V215A CCCGTGTCTTCAT . 79.0 4.0 76.0 0.0 . 93 . . Atlas-SNP ASAP2 8853 hgsc.bcm.edu hg19 2 9533657 9533657 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ASAP2 NM_003887 exon24 c.C2565A p.S855R GCCCAGCGTAATG . 80.0 12.0 71.0 0.0 . 91 . . Atlas-SNP PSME4 23198 hgsc.bcm.edu hg19 2 54163250 54163250 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PSME4 NM_014614 exon7 c.A808G p.I270V AATCTATGTACCC . 59.0 4.0 67.0 0.0 . 247 . . Atlas-SNP BCL11A 53335 hgsc.bcm.edu hg19 2 60687558 60687558 + Missense_Mutation SNP T T G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BCL11A NM_022893 exon4 c.A2489C p.N830T ATATCATTATTCA . 50.0 31.0 84.0 0.0 . 298 . . Atlas-SNP USP34 9736 hgsc.bcm.edu hg19 2 61571021 61571021 + Missense_Mutation SNP G G T rs373411362 alternate_allele TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . USP34 NM_014709 exon16 c.C2429A p.A810E AGTTCCGCATGTG . 173.0 112.0 196.0 0.0 . 334 . . Atlas-SNP ACTR2 10097 hgsc.bcm.edu hg19 2 65466992 65466992 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ACTR2 NM_001005386 exon2 c.A55G p.K19E TTTGTGAAGTGTG . 93.0 4.0 104.0 0.0 . 30 . . Atlas-SNP ETAA1 54465 hgsc.bcm.edu hg19 2 67632242 67632242 + Missense_Mutation SNP A A G rs375345566 TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ETAA1 NM_019002 exon5 c.A2428G p.S810G GCTCAGAGCAACC . 73.0 5.0 77.0 0.0 . 88 . . Atlas-SNP EXOC6B 23233 hgsc.bcm.edu hg19 2 72707813 72707813 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EXOC6B NM_015189 exon17 c.A1732G p.T578A TGTTGGTGATAAA . 76.0 4.0 111.0 0.0 . 93 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84924794 84924794 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DNAH6 NM_001370 exon47 c.A7620G p.L2540L GGTTTTAGCGGCC . 64.0 4.0 83.0 0.0 . 194 . . Atlas-SNP PTCD3 55037 hgsc.bcm.edu hg19 2 86348628 86348628 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PTCD3 NM_017952 exon8 c.A565G p.N189D ACAACAAATAGTC . 98.0 4.0 116.0 0.0 . 51 . . Atlas-SNP FER1L5 90342 hgsc.bcm.edu hg19 2 97365352 97365352 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FER1L5 NM_001113382 exon42 c.A4757G p.D1586G ACTTCGACCTATT . 106.0 5.0 105.0 0.0 . 113 . . Atlas-SNP DPP10 57628 hgsc.bcm.edu hg19 2 116593811 116593811 + Missense_Mutation SNP A A C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DPP10 NM_001178034 exon22 c.A2041C p.I681L GCACCTATCACAG . 118.0 17.0 142.0 0.0 . 415 . . Atlas-SNP CNTNAP5 129684 hgsc.bcm.edu hg19 2 125192079 125192079 + Missense_Mutation SNP T T G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CNTNAP5 NM_130773 exon5 c.T548G p.F183C CTGACTTTGATGG . 185.0 86.0 232.0 0.0 . 405 . . Atlas-SNP CCDC148 130940 hgsc.bcm.edu hg19 2 159035423 159035423 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC148 NM_138803 exon12 c.A1456G p.R486G GTGCTCTCTCTTT . 89.0 4.0 91.0 0.0 . 64 . . Atlas-SNP GALNT3 2591 hgsc.bcm.edu hg19 2 166613715 166613715 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GALNT3 NM_004482 exon7 c.G1234A p.V412I CAACAACAGAGCA . 89.0 4.0 86.0 0.0 . 65 . . Atlas-SNP BBS5 129880 hgsc.bcm.edu hg19 2 170343593 170343593 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BBS5 NM_152384 exon3 c.A157G p.T53A TTGGTAACAAATT . 83.0 4.0 87.0 0.0 . 27 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179401122 179401122 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TTN NM_001267550 exon357 c.T100352C p.V33451A GAAAAGACAGTTT . 99.0 4.0 119.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179648880 179648880 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TTN NM_001267550 exon16 c.G2692A p.V898M TTTTCACCTCAAC . 259.0 12.0 256.0 0.0 . 18412 . . Atlas-SNP NDUFS1 4719 hgsc.bcm.edu hg19 2 207008850 207008850 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NDUFS1 NM_001199984 exon10 c.C921T p.A307A ATCATAGGCAAAT . 67.0 4.0 84.0 0.0 . 82 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210761117 210761117 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UNC80 NM_032504 exon27 c.A4363G p.R1455G TACCACAGAAACA . 93.0 5.0 98.0 0.0 . 280 . . Atlas-SNP MREG 55686 hgsc.bcm.edu hg19 2 216861060 216861060 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MREG NM_018000 exon2 c.T224C p.V75A CGAATGACTATCA . 85.0 5.0 93.0 0.0 . 10 . . Atlas-SNP PSMD1 5707 hgsc.bcm.edu hg19 2 232028362 232028362 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PSMD1 NM_002807 exon21 c.A2402G p.Q801R AAGTTCAGTATAA . 75.0 4.0 80.0 0.0 . 77 . . Atlas-SNP AGXT 189 hgsc.bcm.edu hg19 2 241813472 241813472 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 AGXT,NS,adenoma,0,1 AGXT NM_000030 exon6 c.A673G p.K225E AGTGACAAGGCCA . 79.0 4.0 69.0 1.0 . 50 . . Atlas-SNP CNTN6 27255 hgsc.bcm.edu hg19 3 1337367 1337367 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CNTN6 NM_014461 exon6 c.A537G p.G179G GACGGGAAACTTG . 78.0 4.0 123.0 0.0 . 245 . . Atlas-SNP CNTN4 152330 hgsc.bcm.edu hg19 3 3097904 3097904 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 CNTN4_ENST00000418658,rectum,carcinoma,0,2 CNTN4 NM_175607 exon25 c.A3081G p.X1027W TTTATGACAAAAG . 48.0 2.0 74.0 0.0 . 335 . . Atlas-SNP CAND2 23066 hgsc.bcm.edu hg19 3 12858556 12858556 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CAND2 NM_001162499 exon10 c.C2125T p.H709Y GACATGCATGTGG . 88.0 4.0 81.0 0.0 . 138 . . Atlas-SNP ZNF860 344787 hgsc.bcm.edu hg19 3 32030646 32030646 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF860 NM_001137674 exon2 c.T75C p.T25T CTTGACTTTTAGG . 72.0 4.0 135.0 0.0 . 96 . . Atlas-SNP GLB1 2720 hgsc.bcm.edu hg19 3 33110429 33110429 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GLB1 NM_000404 exon3 c.A279G p.P93P CTGTCCTGGCCAG . 95.0 4.0 136.0 0.0 . 51 . . Atlas-SNP XIRP1 165904 hgsc.bcm.edu hg19 3 39226588 39226588 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . XIRP1 NM_194293 exon2 c.T4349C p.M1450T CCTTCCATGGGCT . 49.0 14.0 64.0 0.0 . 173 . . Atlas-SNP ULK4 54986 hgsc.bcm.edu hg19 3 41439687 41439687 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ULK4 NM_017886 exon35 c.T3561C p.Y1187Y CCCTCCATACAGC . 73.0 4.0 115.0 0.0 . 150 . . Atlas-SNP CCK 885 hgsc.bcm.edu hg19 3 42305118 42305118 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCK NM_000729 exon4 c.A5G p.N2S CCGCTGTTCATGG . 51.0 4.0 52.0 0.0 . 15 . . Atlas-SNP CDCP1 64866 hgsc.bcm.edu hg19 3 45153758 45153758 + Missense_Mutation SNP C C G rs149422328 bycluster;alternate_allele TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CDCP1 NM_178181 exon3 c.G472C p.G158R TGACTCCGTCTGG . 60.0 28.0 94.0 0.0 . 61 . C|1.000;T|0.000 Atlas-SNP SHISA5 51246 hgsc.bcm.edu hg19 3 48510952 48510952 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SHISA5 NM_016479 exon5 c.T451C p.S151P TGGTGGATGTGGT . 91.0 5.0 114.0 0.0 . 10 . . Atlas-SNP DOCK3 1795 hgsc.bcm.edu hg19 3 51378810 51378810 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DOCK3 NM_004947 exon38 c.A3909G p.K1303K CAACAAAGGCAAG . 99.0 4.0 153.0 0.0 . 397 . . Atlas-SNP SFMBT1 51460 hgsc.bcm.edu hg19 3 52962211 52962211 + Silent SNP A A C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SFMBT1 NM_016329 exon9 c.T1044G p.P348P ACCTGGAGGGGGG . 28.0 12.0 48.0 0.0 . 53 . . Atlas-SNP PTPRG 5793 hgsc.bcm.edu hg19 3 62180755 62180755 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PTPRG NM_002841 exon10 c.T1238C p.V413A GCCATGTCTCACC . 80.0 6.0 131.0 0.0 . 153 . . Atlas-SNP KBTBD8 84541 hgsc.bcm.edu hg19 3 67049555 67049555 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KBTBD8 NM_032505 exon2 c.A167G p.D56G AAGTGGATCACGG . 94.0 4.0 139.0 0.0 . 101 . . Atlas-SNP EPHA6 285220 hgsc.bcm.edu hg19 3 96533714 96533714 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EPHA6 NM_001080448 exon1 c.T247C p.S83P CACTTCTCTTTAA . 109.0 5.0 128.0 0.0 . 439 . . Atlas-SNP KIAA2018 205717 hgsc.bcm.edu hg19 3 113379962 113379962 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 KIAA2018,NS,carcinoma,0,1 KIAA2018 NM_001009899 exon7 c.T567C p.T189T ATTGCAAGTCCTC . 97.0 4.0 98.0 0.0 . 180 . . Atlas-SNP GRAMD1C 54762 hgsc.bcm.edu hg19 3 113601609 113601609 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GRAMD1C NM_017577 exon6 c.C470T p.T157I TCTTCACATCTTT . 123.0 5.0 137.0 0.0 . 71 . . Atlas-SNP ARHGAP31 57514 hgsc.bcm.edu hg19 3 119133131 119133131 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ARHGAP31 NM_020754 exon12 c.T2355C p.P785P TGCTCCTCCCCCT . 40.0 4.0 56.0 0.0 . 175 . . Atlas-SNP LRRC58 116064 hgsc.bcm.edu hg19 3 120053943 120053943 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . LRRC58 NM_001099678 exon3 c.A673G p.T225A GATATGTCAGCAA . 73.0 4.0 53.0 0.0 . 18 . . Atlas-SNP STXBP5L 9515 hgsc.bcm.edu hg19 3 120941989 120941989 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . STXBP5L NM_014980 exon11 c.A1096G p.T366A TGTGAAACGCCCT . 60.0 4.0 72.0 0.0 . 159 . . Atlas-SNP UROC1 131669 hgsc.bcm.edu hg19 3 126229602 126229602 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UROC1 NM_001165974 exon2 c.G162A p.P54P GACATCCGGGGGG . 45.0 9.0 39.0 0.0 . 150 . . Atlas-SNP PLXND1 23129 hgsc.bcm.edu hg19 3 129291728 129291728 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PLXND1 NM_015103 exon14 c.A2894G p.N965S GAGGCGTTCACGG . 94.0 4.0 66.0 0.0 . 149 . . Atlas-SNP COL6A5 256076 hgsc.bcm.edu hg19 3 130098302 130098302 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . COL6A5 NM_153264 exon4 c.C709A p.L237I GCTGACCTCGTGT . 201.0 90.0 163.0 0.0 . 205 . . Atlas-SNP ATP2C1 27032 hgsc.bcm.edu hg19 3 130735014 130735014 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ATP2C1 NM_001199180 exon28 c.A2845G p.S949G GAGAGGAGTGGAC . 105.0 5.0 74.0 0.0 . 94 . . Atlas-SNP U2SURP 23350 hgsc.bcm.edu hg19 3 142740318 142740318 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . U2SURP NM_001080415 exon10 c.T773C p.L258P TAGTTCTTGATGA . 98.0 4.0 152.0 0.0 . 66 . . Atlas-SNP LRRIQ4 344657 hgsc.bcm.edu hg19 3 169548290 169548290 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . LRRIQ4 NM_001080460 exon3 c.A1205G p.E402G TCAAAGAGCTATA . 66.0 4.0 62.0 0.0 . 68 . . Atlas-SNP MFN1 55669 hgsc.bcm.edu hg19 3 179095207 179095207 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MFN1 NM_033540 exon12 c.A1300G p.N434D CATCCTAATCCAG . 96.0 4.0 107.0 0.0 . 72 . . Atlas-SNP CCDC39 339829 hgsc.bcm.edu hg19 3 180361933 180361933 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 CCDC39_ENST00000442201,caecum,carcinoma,0,2 CCDC39 NM_181426 exon12 c.T1640C p.L547P TTATCAAGTTCTT . 81.0 5.0 97.0 0.0 . 242 . . Atlas-SNP ABCC5 10057 hgsc.bcm.edu hg19 3 183655819 183655819 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ABCC5 NM_005688 exon26 c.C3724T p.R1242C CCAGACGGAAGAG . 124.0 27.0 126.0 0.0 . 142 . . Atlas-SNP PPP2R2C 5522 hgsc.bcm.edu hg19 4 6377634 6377634 + Missense_Mutation SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPP2R2C NM_181876 exon4 c.T359A p.I120N TCGGTAATCTTCC . 190.0 92.0 208.0 0.0 . 63 . . Atlas-SNP WDR1 9948 hgsc.bcm.edu hg19 4 10090367 10090367 + Splice_Site SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . WDR1 NM_005112 exon4 c.139-2A>G . TGGTCCTGCAGGA . 70.0 5.0 66.0 0.0 . 93 . . Atlas-SNP CC2D2A 57545 hgsc.bcm.edu hg19 4 15539668 15539668 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CC2D2A NM_001080522 exon17 c.A1911G p.R637R GGAGAGAGCAGCC . 117.0 5.0 84.0 0.0 . 158 . . Atlas-SNP PPARGC1A 10891 hgsc.bcm.edu hg19 4 23816124 23816124 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPARGC1A NM_013261 exon8 c.T982C p.S328P TCTTTGATGGTGG . 79.0 4.0 100.0 0.0 . 129 . . Atlas-SNP PCDH7 5099 hgsc.bcm.edu hg19 4 30724545 30724545 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PCDH7 NM_032457 exon1 c.T1501C p.F501L CGGGAGTTCAACG . 73.0 4.0 62.0 0.0 . 215 . . Atlas-SNP ARAP2 116984 hgsc.bcm.edu hg19 4 36069848 36069848 + Missense_Mutation SNP T T C rs202134005 by1000genomes;alternate_allele TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ARAP2 NM_015230 exon33 c.A4796G p.E1599G ACGGACTCTTTAT . 57.0 4.0 59.0 0.0 . 210 . T|0.999;A|0.001 Atlas-SNP KIAA1239 57495 hgsc.bcm.edu hg19 4 37447599 37447599 + Missense_Mutation SNP T T A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIAA1239 NM_001144990 exon7 c.T3989A p.I1330N GGGAAATCATTTA . 129.0 6.0 127.0 0.0 . 79 . . Atlas-SNP AFP 174 hgsc.bcm.edu hg19 4 74308085 74308085 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AFP NM_001134 exon5 c.T555C p.Y185Y TCGCTATGACAAA . 63.0 4.0 114.0 0.0 . 60 . . Atlas-SNP SDAD1 55153 hgsc.bcm.edu hg19 4 76882410 76882410 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SDAD1 NM_018115 exon15 c.A1233G p.E411E AAGTTCTTCAGTC . 87.0 4.0 142.0 0.0 . 47 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79204044 79204044 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FRAS1 NM_001166133 exon12 c.A1178G p.E393G GCTACGAGCCCTC . 97.0 6.0 131.0 0.0 . 779 . . Atlas-SNP PRKG2 5593 hgsc.bcm.edu hg19 4 82027009 82027009 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PRKG2 NM_006259 exon15 c.A2021G p.K674R GTTATCTTCCTGG . 92.0 4.0 142.0 0.0 . 195 . . Atlas-SNP SEC31A 22872 hgsc.bcm.edu hg19 4 83778913 83778913 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 SEC31A_ENST00000395310,NS,malignant_melanoma,0,1 SEC31A NM_001077206 exon15 c.T1631C p.I544T TCTTTAATGTGCT . 21.0 2.0 50.0 0.0 . 227 . . Atlas-SNP AFF1 4299 hgsc.bcm.edu hg19 4 88052964 88052964 + Missense_Mutation SNP T T A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AFF1 NM_001166693 exon18 c.T3121A p.S1041T TTAAAATCCTTCT . 104.0 19.0 181.0 0.0 . 102 . . Atlas-SNP MEPE 56955 hgsc.bcm.edu hg19 4 88766777 88766777 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MEPE NM_020203 exon4 c.T757C p.S253P GATATATCTCCTT . 78.0 4.0 118.0 0.0 . 86 . . Atlas-SNP SPRY1 10252 hgsc.bcm.edu hg19 4 124323669 124323669 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPRY1 NM_001258039 exon2 c.A923G p.E308G AGCTGGAGAGCTG . 92.0 4.0 132.0 0.0 . 28 . . Atlas-SNP ANKRD50 57182 hgsc.bcm.edu hg19 4 125592939 125592939 + Missense_Mutation SNP T T C rs200716397 TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ANKRD50 NM_020337 exon4 c.A1493G p.Q498R AACAGCTGTAGCA . 76.0 4.0 116.0 0.0 . 136 . T|0.999;C|0.001 Atlas-SNP UCP1 7350 hgsc.bcm.edu hg19 4 141484605 141484605 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UCP1 NM_021833 exon3 c.G393A p.G131G GGGTTGCCCAATG . 72.0 32.0 110.0 0.0 . 33 . . Atlas-SNP RNF150 57484 hgsc.bcm.edu hg19 4 141888829 141888829 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RNF150 NM_020724 exon2 c.T683C p.V228A TAAAAGACGAGCC . 97.0 5.0 124.0 0.0 . 94 . . Atlas-SNP POU4F2 5458 hgsc.bcm.edu hg19 4 147561644 147561644 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . POU4F2 NM_004575 exon2 c.T914C p.L305P AGTCCCTCACACT . 51.0 4.0 76.0 0.0 . 83 . . Atlas-SNP TTC29 83894 hgsc.bcm.edu hg19 4 147860979 147860979 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TTC29 NM_031956 exon3 c.T69C p.P23P GGAGCAAGGCAGC . 74.0 4.0 175.0 0.0 . 63 . . Atlas-SNP LRBA 987 hgsc.bcm.edu hg19 4 151773418 151773418 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . LRBA NM_006726 exon23 c.T3444C p.F1148F ATTACCAAACATG . 52.0 4.0 118.0 0.0 . 253 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155156115 155156115 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DCHS2 NM_017639 exon25 c.A8324G p.D2775G TAGTTGTCTTTTC . 89.0 4.0 171.0 0.0 . 594 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155278418 155278418 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DCHS2 NM_017639 exon6 c.A753G p.E251E CATTACTTCCTTG . 33.0 4.0 42.0 0.0 . 594 . . Atlas-SNP DDX60L 91351 hgsc.bcm.edu hg19 4 169282339 169282339 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 DDX60L,colon,carcinoma,0,1 DDX60L NM_001012967 exon37 c.A4952G p.K1651R AAACACTTTAAAA . 94.0 4.0 113.0 0.0 . 116 . . Atlas-SNP DDX60L 91351 hgsc.bcm.edu hg19 4 169317190 169317190 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DDX60L NM_001012967 exon27 c.A3577G p.K1193E GAATCTTCAGATT . 146.0 6.0 207.0 0.0 . 116 . . Atlas-SNP ASB5 140458 hgsc.bcm.edu hg19 4 177190150 177190150 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ASB5 NM_080874 exon1 c.T110C p.I37T CTGAGGATGGCAA . 77.0 4.0 101.0 0.0 . 88 . . Atlas-SNP FAM149A 25854 hgsc.bcm.edu hg19 4 187077241 187077241 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM149A NM_001006655 exon6 c.T471C p.C157C TGACTGTGTCAAA . 71.0 4.0 108.0 0.0 . 52 . . Atlas-SNP KLKB1 3818 hgsc.bcm.edu hg19 4 187175807 187175807 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KLKB1 NM_000892 exon12 c.A1379G p.D460G CAAAAGATACACC . 79.0 4.0 136.0 0.0 . 155 . . Atlas-SNP KIAA0947 23379 hgsc.bcm.edu hg19 5 5454689 5454689 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIAA0947 NM_015325 exon11 c.A629G p.E210G TGAAGGAACTCTG . 83.0 4.0 64.0 0.0 . 301 . . Atlas-SNP CDH9 1007 hgsc.bcm.edu hg19 5 26906841 26906841 + Silent SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CDH9 NM_016279 exon4 c.G630T p.V210V TGGGTCCACTGAA . 73.0 20.0 87.0 0.0 . 305 . . Atlas-SNP RICTOR 253260 hgsc.bcm.edu hg19 5 38958582 38958582 + Missense_Mutation SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RICTOR NM_152756 exon24 c.T2383A p.S795T GGTGGGATAACGC . 217.0 93.0 220.0 0.0 . 182 . . Atlas-SNP OXCT1 5019 hgsc.bcm.edu hg19 5 41794835 41794835 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OXCT1 NM_000436 exon12 c.T1116C p.T372T AAGAATAGTAACT . 66.0 4.0 46.0 0.0 . 54 . . Atlas-SNP FAM169A 26049 hgsc.bcm.edu hg19 5 74130327 74130327 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM169A NM_015566 exon5 c.T414C p.C138C GCTATGACACAGG . 99.0 4.0 119.0 0.0 . 61 . . Atlas-SNP ACOT12 134526 hgsc.bcm.edu hg19 5 80655835 80655835 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ACOT12 NM_130767 exon5 c.T383C p.L128P GTTAGAAGTGTGA . 83.0 4.0 73.0 0.0 . 57 . . Atlas-SNP SLCO6A1 133482 hgsc.bcm.edu hg19 5 101755554 101755554 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLCO6A1 NM_173488 exon8 c.C1448T p.A483V ATCCCAGCAAATT . 195.0 13.0 243.0 0.0 . 153 . . Atlas-SNP PPIP5K2 23262 hgsc.bcm.edu hg19 5 102490644 102490644 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPIP5K2 NM_015216 exon12 c.A1400G p.E467G TATTAGAGATGTG . 55.0 4.0 68.0 0.0 . 98 . . Atlas-SNP EFNA5 1946 hgsc.bcm.edu hg19 5 106763128 106763128 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EFNA5 NM_001962 exon2 c.C208A p.P70T CTTCTGGGACGGA . 97.0 4.0 123.0 0.0 . 16 . . Atlas-SNP FER 2241 hgsc.bcm.edu hg19 5 108380491 108380491 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FER NM_005246 exon15 c.A1824G p.E608E ACAAGAAGCCAAG . 95.0 4.0 108.0 0.0 . 100 . . Atlas-SNP YTHDC2 64848 hgsc.bcm.edu hg19 5 112903376 112903376 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . YTHDC2 NM_022828 exon23 c.C3074T p.A1025V AAGCTGCAGCAAT . 90.0 4.0 96.0 0.0 . 118 . . Atlas-SNP GRAMD3 65983 hgsc.bcm.edu hg19 5 125813469 125813469 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GRAMD3 NM_001146319 exon6 c.T617C p.V206A CAACAGTCACAGA . 91.0 4.0 87.0 0.0 . 30 . . Atlas-SNP PCDHA4 56144 hgsc.bcm.edu hg19 5 140188502 140188502 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PCDHA4 NM_031500 exon1 c.T1730C p.V577A GCGCAGTGAGCGA . 94.0 4.0 60.0 0.0 . 419 . . Atlas-SNP PCDHB14 56122 hgsc.bcm.edu hg19 5 140605206 140605206 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 PCDHB14,NS,carcinoma,0,1 PCDHB14 NM_018934 exon1 c.C2129T p.A710V TCGTGGCGGTGCG . 57.0 4.0 34.0 0.0 . 132 . . Atlas-SNP PCDHGA5 56110 hgsc.bcm.edu hg19 5 140744024 140744024 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PCDHGA5 NM_032054 exon1 c.T127C p.S43P AAAGGCTCCTTCG . 90.0 4.0 108.0 0.0 . 215 . . Atlas-SNP ARAP3 64411 hgsc.bcm.edu hg19 5 141059772 141059772 + Silent SNP G G A rs146312944 TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ARAP3 NM_022481 exon2 c.C282T p.P94P CGGCACGGGCTTA . 134.0 66.0 150.0 0.0 . 139 . G|1.000;A|0.000 Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150945475 150945475 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAT2 NM_001447 exon1 c.G3018T p.R1006S TAGGGGCCTCCCA . 154.0 9.0 128.0 0.0 . 465 . . Atlas-SNP SGCD 6444 hgsc.bcm.edu hg19 5 155935693 155935693 + Missense_Mutation SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SGCD NM_000337 exon4 c.A275T p.K92I ACGCCAAAGAAAT . 63.0 32.0 70.0 0.0 . 52 . . Atlas-SNP CYFIP2 26999 hgsc.bcm.edu hg19 5 156755023 156755023 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CYFIP2 NM_001037332 exon19 c.C2122G p.Q708E GCAGACCAGATCT . 108.0 21.0 115.0 0.0 . 354 . . Atlas-SNP HMMR 3161 hgsc.bcm.edu hg19 5 162911119 162911119 + Missense_Mutation SNP T T G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HMMR NM_001142556 exon16 c.T1830G p.N610K GTTGAATGAACAT . 133.0 9.0 127.0 0.0 . 64 . . Atlas-SNP KIF13A 63971 hgsc.bcm.edu hg19 6 17834225 17834225 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIF13A NM_001105567 exon12 c.A1233G p.E411E CTTCTCTTCCCAA . 125.0 5.0 115.0 0.0 . 276 . . Atlas-SNP HIST1H1E 3008 hgsc.bcm.edu hg19 6 26156843 26156843 + Missense_Mutation SNP G G T rs150948103 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 HIST1H1E,NS,carcinoma,0,1 HIST1H1E NM_005321 exon1 c.G225T p.K75N GGAGAAGAACAAC . 118.0 28.0 129.0 0.0 . 69 . G|0.994;A|0.006 Atlas-SNP PRRC2A 7916 hgsc.bcm.edu hg19 6 31599888 31599888 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PRRC2A NM_004638 exon16 c.T3438C p.P1146P CCCACCTTCACCA . 87.0 4.0 90.0 0.0 . 152 . . Atlas-SNP BAG6 7917 hgsc.bcm.edu hg19 6 31610072 31610072 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BAG6 NM_004639 exon15 c.C2062T p.P688S CTCCAGGACTCCC . 102.0 7.0 66.0 0.0 . 73 . . Atlas-SNP FAM83B 222584 hgsc.bcm.edu hg19 6 54805894 54805894 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM83B NM_001010872 exon5 c.A2125G p.S709G TCTAAAAGCATGC . 78.0 4.0 72.0 0.0 . 186 . . Atlas-SNP FAM46A 55603 hgsc.bcm.edu hg19 6 82461742 82461742 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM46A NM_017633 exon2 c.C117T p.G39G GTCGCCGCCGCCG . 34.0 4.0 14.0 0.0 . 37 . . Atlas-SNP PGM3 5238 hgsc.bcm.edu hg19 6 83889643 83889643 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PGM3 NM_001199917 exon8 c.A915G p.G305G TGCATCTCCATCA . 108.0 5.0 116.0 0.0 . 39 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90428856 90428856 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MDN1 NM_014611 exon41 c.A6056G p.Q2019R CTTACCTGAACAT . 57.0 4.0 60.0 0.0 . 478 . . Atlas-SNP MANEA 79694 hgsc.bcm.edu hg19 6 96053973 96053973 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MANEA NM_024641 exon5 c.A1081G p.I361V GGATACATAGATA . 46.0 4.0 59.0 0.0 . 58 . . Atlas-SNP NDUFAF4 29078 hgsc.bcm.edu hg19 6 97339243 97339243 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 NDUFAF4,colon,carcinoma,0,1 NDUFAF4 NM_014165 exon3 c.G265A p.E89K TCGGCTCTTGACA . 38.0 2.0 48.0 0.0 . 16 . . Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 101109765 101109765 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ASCC3 NM_006828 exon16 c.A2620G p.S874G AATGGCTGAGTTT . 110.0 5.0 108.0 0.0 . 205 . . Atlas-SNP FRK 2444 hgsc.bcm.edu hg19 6 116263618 116263618 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FRK NM_002031 exon8 c.A1477G p.T493A AGTCTGTTTCAAA . 102.0 5.0 143.0 0.0 . 78 . . Atlas-SNP ZUFSP 221302 hgsc.bcm.edu hg19 6 116987986 116987986 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 ZUFSP,NS,carcinoma,0,1 ZUFSP NM_145062 exon2 c.A370G p.T124A ATTCAGTTAAGTT . 134.0 6.0 171.0 1.0 . 46 . . Atlas-SNP GJA1 2697 hgsc.bcm.edu hg19 6 121768871 121768871 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GJA1 NM_000165 exon2 c.G878A p.R293K GCGACAGAAACAA . 50.0 6.0 85.0 0.0 . 61 . . Atlas-SNP CENPW 387103 hgsc.bcm.edu hg19 6 126661441 126661441 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CENPW NM_001012507 exon1 c.T22C p.S8P ATAGTCTCCCAGA . 68.0 4.0 66.0 0.0 . 7 . . Atlas-SNP PTPRK 5796 hgsc.bcm.edu hg19 6 128388889 128388889 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PTPRK NM_001135648 exon12 c.A1932G p.R644R GGCTTCTCTCTTG . 83.0 4.0 97.0 0.0 . 330 . . Atlas-SNP MOXD1 26002 hgsc.bcm.edu hg19 6 132649228 132649228 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MOXD1 NM_015529 exon6 c.A870G p.G290G GGATAATCCAACA . 102.0 5.0 118.0 0.0 . 136 . . Atlas-SNP HBS1L 10767 hgsc.bcm.edu hg19 6 135323935 135323935 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HBS1L NM_006620 exon5 c.T476C p.V159A TTTGGCACAATTT . 125.0 5.0 152.0 0.0 . 75 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138576727 138576727 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIAA1244 NM_020340 exon10 c.T925C p.C309R TGCTCCTGCACTG . 85.0 4.0 86.0 0.0 . 236 . . Atlas-SNP HIVEP2 3097 hgsc.bcm.edu hg19 6 143092668 143092668 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HIVEP2 NM_006734 exon5 c.T3208C p.S1070P ACGGTGATACCGT . 95.0 4.0 78.0 0.0 . 225 . . Atlas-SNP SHPRH 257218 hgsc.bcm.edu hg19 6 146243946 146243946 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SHPRH NM_173082 exon19 c.T3584C p.F1195S AGTAAGAACTGAA . 78.0 4.0 91.0 0.0 . 169 . . Atlas-SNP ESR1 2099 hgsc.bcm.edu hg19 6 152265434 152265434 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ESR1 NM_000125 exon4 c.T887C p.L296P GCCCGCTCATGAT . 109.0 5.0 99.0 0.0 . 94 . . Atlas-SNP MTRF1L 54516 hgsc.bcm.edu hg19 6 153313995 153313995 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MTRF1L NM_019041 exon5 c.A802G p.T268A CACCTGTTGGAAG . 63.0 4.0 42.0 0.0 . 21 . . Atlas-SNP NOX3 50508 hgsc.bcm.edu hg19 6 155775983 155775983 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NOX3 NM_015718 exon3 c.A217G p.S73G TTCGACTGACAGG . 80.0 4.0 60.0 0.0 . 93 . . Atlas-SNP AGPAT4 56895 hgsc.bcm.edu hg19 6 161567572 161567572 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AGPAT4 NM_020133 exon7 c.A827G p.K276R TAGAGCTTGTGCA . 64.0 4.0 68.0 0.0 . 50 . . Atlas-SNP PDE10A 10846 hgsc.bcm.edu hg19 6 165863852 165863852 + Splice_Site SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PDE10A NM_001130690 exon5 c.226-2A>G . TGGTACTTTGGAT . 84.0 5.0 100.0 0.0 . 154 . . Atlas-SNP PDCD2 5134 hgsc.bcm.edu hg19 6 170886665 170886665 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PDCD2 NM_002598 exon6 c.T1017C p.D339D TGTTACATCCTGC . 99.0 4.0 107.0 0.0 . 13 . . Atlas-SNP CARD11 84433 hgsc.bcm.edu hg19 7 2963882 2963882 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CARD11 NM_032415 exon15 c.A1925G p.K642R GAGAACTTCCTGA . 91.0 4.0 82.0 0.0 . 339 . . Atlas-SNP ICA1 3382 hgsc.bcm.edu hg19 7 8198174 8198174 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ICA1 NM_022307 exon7 c.A688G p.M230V CTAGCATGTGAGA . 108.0 46.0 134.0 0.0 . 65 . . Atlas-SNP ICA1 3382 hgsc.bcm.edu hg19 7 8198175 8198175 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ICA1 NM_022307 exon7 c.C687A p.H229Q TAGCATGTGAGAC . 111.0 47.0 134.0 0.0 . 65 . . Atlas-SNP VWDE 221806 hgsc.bcm.edu hg19 7 12391294 12391294 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . VWDE NM_001135924 exon19 c.T3791C p.L1264P CTTGTGAGAACCA . 92.0 4.0 80.0 0.0 . 123 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47849144 47849144 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PKD1L1 NM_138295 exon51 c.T7613C p.L2538P ACACAGAGGTGGA . 45.0 5.0 45.0 0.0 . 328 . . Atlas-SNP GNAI1 2770 hgsc.bcm.edu hg19 7 79764532 79764532 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GNAI1 NM_002069 exon1 c.T56C p.I19T AGATGATCGACCG . 98.0 4.0 82.0 0.0 . 44 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82581498 82581498 + Missense_Mutation SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 Q9Y6V0-3,colon,carcinoma,-1,3 PCLO NM_014510 exon5 c.T8771A p.I2924K TCTTCTATTATTT . 48.0 5.0 41.0 2.0 . 1506 . . Atlas-SNP FZD1 8321 hgsc.bcm.edu hg19 7 90894459 90894459 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 .,4 FZD1 NM_003505 exon1 c.A264G p.Q88Q GCAGCAACCGCCG . 19.0 2.0 6.0 1.0 . 64 . . Atlas-SNP KRIT1 889 hgsc.bcm.edu hg19 7 91851228 91851228 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KRIT1 NM_194456 exon15 c.A1551G p.E517E TTCAACTTCCAAG . 73.0 4.0 50.0 0.0 . 66 . . Atlas-SNP ANKIB1 54467 hgsc.bcm.edu hg19 7 92028083 92028083 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ANKIB1 NM_019004 exon20 c.T3090C p.S1030S TGTCAGTGAAGGT . 129.0 51.0 103.0 0.0 . 92 . . Atlas-SNP DLX6 1750 hgsc.bcm.edu hg19 7 96635385 96635385 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 DLX6,right_lower_lobe,carcinoma,0,1 DLX6 NM_005222 exon1 c.G96A p.Q32Q GCAGCAGCAACAG . 28.0 3.0 14.0 0.0 . 37 . . Atlas-SNP AP4M1 9179 hgsc.bcm.edu hg19 7 99704091 99704091 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AP4M1 NM_004722 exon14 c.A1091G p.D364G GCTGGGACCTGCC . 77.0 4.0 77.0 0.0 . 39 . . Atlas-SNP FBXO24 26261 hgsc.bcm.edu hg19 7 100187324 100187324 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FBXO24 NM_012172 exon1 c.A61G p.S21G GGCAGGAGCAGGG . 130.0 6.0 118.0 0.0 . 125 . . Atlas-SNP MLL5 55904 hgsc.bcm.edu hg19 7 104746372 104746372 + Nonsense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MLL5 NM_018682 exon18 c.C2518T p.Q840X CCCTGTCAAGAAA . 152.0 24.0 154.0 0.0 . 173 . . Atlas-SNP DUS4L 11062 hgsc.bcm.edu hg19 7 107216859 107216859 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DUS4L NM_001270419 exon7 c.A528G p.E176E GGCTGAAGCAACA . 98.0 4.0 69.0 0.0 . 27 . . Atlas-SNP NRCAM 4897 hgsc.bcm.edu hg19 7 107807498 107807498 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NRCAM NM_001037132 exon27 c.G3334A p.E1112K CAATTTCTTTTCT . 77.0 4.0 95.0 0.0 . 267 . . Atlas-SNP KLHDC10 23008 hgsc.bcm.edu hg19 7 129762020 129762020 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KLHDC10 NM_014997 exon5 c.T757C p.S253P AACCTATCCTGTG . 80.0 4.0 87.0 0.0 . 36 . . Atlas-SNP TMEM209 84928 hgsc.bcm.edu hg19 7 129818251 129818251 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TMEM209 NM_032842 exon10 c.A1237G p.R413G TGATCCTTTCAAA . 54.0 4.0 60.0 0.0 . 31 . . Atlas-SNP AGAP3 116988 hgsc.bcm.edu hg19 7 150825737 150825737 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AGAP3 NM_031946 exon10 c.A1292G p.D431G TCTGTGACAACGG . 75.0 4.0 61.0 0.0 . 121 . . Atlas-SNP PPP3CC 5533 hgsc.bcm.edu hg19 8 22333119 22333119 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPP3CC NM_001243974 exon3 c.A354G p.R118R GGACAGAGGCTAT . 85.0 4.0 90.0 0.0 . 39 . . Atlas-SNP GPR124 25960 hgsc.bcm.edu hg19 8 37672476 37672476 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GPR124 NM_032777 exon2 c.T329C p.L110P CACTGCTGGAGAA . 98.0 4.0 117.0 0.0 . 85 . . Atlas-SNP AGPAT6 137964 hgsc.bcm.edu hg19 8 41472557 41472557 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AGPAT6 NM_178819 exon10 c.T1043C p.V348A ACCCTGTTGCTAT . 90.0 5.0 124.0 0.0 . 32 . . Atlas-SNP KAT6A 7994 hgsc.bcm.edu hg19 8 41791551 41791551 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_001099412 exon18 c.A4187G p.H1396R TCTTCGTGGTCGT . 98.0 4.0 125.0 0.0 . . . . Atlas-SNP PLAT 5327 hgsc.bcm.edu hg19 8 42045063 42045063 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PLAT NM_000930 exon6 c.A392G p.Q131R ATGCCCTGGTCCT . 73.0 4.0 69.0 0.0 . 62 . . Atlas-SNP HGSNAT 138050 hgsc.bcm.edu hg19 8 43047567 43047567 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HGSNAT NM_152419 exon13 c.T1371C p.S457S CCCATCTTCTGCT . 88.0 4.0 70.0 0.0 . 85 . . Atlas-SNP RP1 6101 hgsc.bcm.edu hg19 8 55542178 55542178 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RP1 NM_006269 exon4 c.T5736C p.A1912A GTATGCTCTTTGT . 58.0 4.0 77.0 0.0 . 429 . . Atlas-SNP CHD7 55636 hgsc.bcm.edu hg19 8 61757511 61757511 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CHD7 NM_017780 exon22 c.C4939G p.L1647V ACCATCCTGGTGT . 99.0 5.0 78.0 0.0 . 534 . . Atlas-SNP PDE7A 5150 hgsc.bcm.edu hg19 8 66636575 66636575 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PDE7A NM_001242318 exon11 c.A1077G p.K359K AGCACATTTCAAA . 58.0 4.0 73.0 0.0 . 78 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 69002857 69002857 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PREX2 NM_025170 exon20 c.T2157C p.I719I GTGCATTATCAAG . 94.0 4.0 116.0 0.0 . 614 . . Atlas-SNP PI15 51050 hgsc.bcm.edu hg19 8 75737542 75737542 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PI15 NM_015886 exon2 c.A58G p.S20G GAAGCAAGTACCG . 120.0 5.0 131.0 0.0 . 73 . . Atlas-SNP KLF10 7071 hgsc.bcm.edu hg19 8 103664250 103664250 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KLF10 NM_005655 exon3 c.T310C p.S104P CTTGAGAGGGTTC . 87.0 4.0 80.0 0.0 . 44 . . Atlas-SNP RAD21 5885 hgsc.bcm.edu hg19 8 117870613 117870613 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RAD21 NM_006265 exon5 c.T459C p.S153S TAAAATACTGATG . 77.0 4.0 67.0 0.0 . 95 . . Atlas-SNP RAD21 5885 hgsc.bcm.edu hg19 8 117870655 117870655 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RAD21 NM_006265 exon5 c.A417G p.R139R TTCCACTCTACTC . 96.0 4.0 76.0 0.0 . 95 . . Atlas-SNP RAD21 5885 hgsc.bcm.edu hg19 8 117870690 117870690 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RAD21 NM_006265 exon5 c.G382T p.D128Y CCACATCGATGTC . 82.0 4.0 56.0 0.0 . 95 . . Atlas-SNP TAF2 6873 hgsc.bcm.edu hg19 8 120810035 120810035 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TAF2 NM_003184 exon7 c.T844C p.S282P GGTATGATGTGGT . 95.0 4.0 91.0 0.0 . 204 . . Atlas-SNP DSCC1 79075 hgsc.bcm.edu hg19 8 120850618 120850618 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DSCC1 NM_024094 exon8 c.A954G p.R318R TTCTGGTCTCGAG . 137.0 6.0 118.0 0.0 . 40 . . Atlas-SNP HHLA1 10086 hgsc.bcm.edu hg19 8 133116394 133116394 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HHLA1 NM_001145095 exon2 c.G100A p.A34T TCTTGGCTTCTCC . 95.0 4.0 81.0 0.0 . 35 . . Atlas-SNP PPP1R16A 84988 hgsc.bcm.edu hg19 8 145726669 145726669 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPP1R16A NM_032902 exon9 c.C1195T p.P399S CCGCCGCCCCCGG . 7.0 7.0 1.0 0.0 . 25 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2029231 2029231 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SMARCA2 NM_139045 exon2 c.T209C p.M70T AAGGCATGCATCA . 73.0 4.0 103.0 0.0 . 313 . . Atlas-SNP ADAMTSL1 92949 hgsc.bcm.edu hg19 9 18636002 18636002 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ADAMTSL1 NM_052866 exon6 c.T663C p.G221G AAAAGGTCCTGAT . 98.0 4.0 163.0 0.0 . 306 . . Atlas-SNP NFX1 4799 hgsc.bcm.edu hg19 9 33351736 33351736 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NFX1 NM_147133 exon16 c.T2603C p.M868T CGTGTATGGCACC . 54.0 4.0 54.0 0.0 . 85 . . Atlas-SNP CREB3 10488 hgsc.bcm.edu hg19 9 35733445 35733445 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CREB3 NM_006368 exon4 c.A398G p.E133G AGAAGGAGGGGCT . 84.0 4.0 125.0 0.0 . 24 . . Atlas-SNP SMC5 23137 hgsc.bcm.edu hg19 9 72967130 72967130 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SMC5 NM_015110 exon25 c.T3189C p.S1063S TTATTCTGAAAAG . 80.0 4.0 102.0 0.0 . 96 . . Atlas-SNP C9orf41 138199 hgsc.bcm.edu hg19 9 77614715 77614715 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . C9orf41 NM_152420 exon4 c.T662C p.L221P TAACCTAGCATAG . 24.0 4.0 43.0 0.0 . 57 . . Atlas-SNP PCSK5 5125 hgsc.bcm.edu hg19 9 78947423 78947423 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PCSK5 NM_001190482 exon33 c.A4564G p.S1522G TGCCACAGCTCTT . 98.0 4.0 141.0 0.0 . 329 . . Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79986002 79986002 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 VPS13A_ENST00000376634,NS,carcinoma,0,3 VPS13A NM_001018038 exon67 c.C9014T p.A3005V TAGGAGCGGTAGC . 92.0 4.0 105.0 0.0 . 735 . . Atlas-SNP IARS 3376 hgsc.bcm.edu hg19 9 95051645 95051645 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . IARS NM_013417 exon2 c.G57A p.L19L AAACTCCAAGATT . 58.0 4.0 115.0 0.0 . 74 . . Atlas-SNP IPPK 64768 hgsc.bcm.edu hg19 9 95411768 95411768 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . IPPK NM_022755 exon5 c.A381G p.A127A GTGCTCTGCAAAG . 92.0 4.0 118.0 0.0 . 34 . . Atlas-SNP C9orf3 84909 hgsc.bcm.edu hg19 9 97535345 97535345 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . C9orf3 NM_001193331 exon3 c.C859T p.P287S CAGGAGCCACCCG . 97.0 4.0 188.0 0.0 . 100 . . Atlas-SNP HSD17B3 3293 hgsc.bcm.edu hg19 9 99006632 99006632 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HSD17B3 NM_000197 exon9 c.A651G p.K217K TTTTGCTTTATAT . 75.0 4.0 104.0 0.0 . 32 . . Atlas-SNP OR2K2 26248 hgsc.bcm.edu hg19 9 114089950 114089950 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OR2K2 NM_205859 exon1 c.T764C p.L255P ATAGAGAGGGCAG . 61.0 4.0 101.0 0.0 . 77 . . Atlas-SNP DNAJC25 548645 hgsc.bcm.edu hg19 9 114411855 114411855 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DNAJC25 NM_001015882 exon3 c.A612G p.K204K AGAAAAAGGCAAA . 81.0 4.0 118.0 0.0 . 20 . . Atlas-SNP SLC46A2 57864 hgsc.bcm.edu hg19 9 115652239 115652239 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLC46A2 NM_033051 exon1 c.C723T p.P241P CACGGCGGGGAGC . 70.0 51.0 92.0 0.0 . 30 . . Atlas-SNP RGS3 5998 hgsc.bcm.edu hg19 9 116358041 116358041 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RGS3 NM_144488 exon25 c.A3407G p.K1136R CATGCAAGGAGGT . 77.0 4.0 93.0 0.0 . 251 . . Atlas-SNP ASTN2 23245 hgsc.bcm.edu hg19 9 119976991 119976991 + Missense_Mutation SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 ASTN2,right_upper_lobe,carcinoma,+2,1 ASTN2 NM_014010 exon3 c.C661G p.L221V ACACCAGCAGCAG . 42.0 2.0 72.0 0.0 . 307 . . Atlas-SNP CNTRL 11064 hgsc.bcm.edu hg19 9 123937427 123937427 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CNTRL NM_007018 exon41 c.A6879G p.A2293A CTCTGCAGATTCA . 79.0 4.0 109.0 0.0 . 161 . . Atlas-SNP RC3H2 54542 hgsc.bcm.edu hg19 9 125613389 125613389 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RC3H2 NM_001100588 exon20 c.A3351G p.K1117K ACTCTGTTTCTTC . 77.0 5.0 147.0 0.0 . 150 . . Atlas-SNP ENG 2022 hgsc.bcm.edu hg19 9 130588025 130588025 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ENG NM_001114753 exon5 c.C638T p.A213V TGGCCGGCCACGC . 24.0 4.0 26.0 0.0 . 44 . . Atlas-SNP PKN3 29941 hgsc.bcm.edu hg19 9 131469012 131469012 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PKN3 NM_013355 exon4 c.T432C p.A144A GGCAGCTGCCCAG . 54.0 5.0 57.0 0.0 . 62 . . Atlas-SNP ADAMTS13 11093 hgsc.bcm.edu hg19 9 136304502 136304502 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ADAMTS13 NM_139027 exon15 c.T1721C p.L574P CATTTCTGACAGT . 78.0 4.0 123.0 0.0 . 113 . . Atlas-SNP GATA3 2625 hgsc.bcm.edu hg19 10 8115947 8115947 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GATA3 NM_001002295 exon6 c.A1296G p.G432G CTTTGGACCACAC . 104.0 6.0 69.0 0.0 . 182 . . Atlas-SNP PHYH 5264 hgsc.bcm.edu hg19 10 13333891 13333891 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PHYH NM_006214 exon5 c.T436C p.F146L CAGTGAAGCACTC . 63.0 4.0 44.0 0.0 . 50 . . Atlas-SNP SKIDA1 387640 hgsc.bcm.edu hg19 10 21806681 21806681 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_207371 exon4 c.A71G p.K24R ATTTGCTTCCCTT . 148.0 6.0 90.0 0.0 . . . . Atlas-SNP PCDH15 65217 hgsc.bcm.edu hg19 10 55945028 55945028 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 PCDH15_ENST00000417177,colon,carcinoma,0,4 PCDH15 NM_001142763 exon13 c.A1321G p.T441A CTTTTGTCTTTGA . 72.0 3.0 130.0 0.0 . 1715 . . Atlas-SNP PCDH15 65217 hgsc.bcm.edu hg19 10 56288150 56288150 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PCDH15 NM_001142763 exon3 c.A104G p.E35G TTACCCTCATATT . 73.0 4.0 91.0 0.0 . 1715 . . Atlas-SNP CCDC6 8030 hgsc.bcm.edu hg19 10 61612353 61612353 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC6 NM_005436 exon2 c.A411G p.E137E TTCTTCTTCTTTC . 84.0 4.0 128.0 0.0 . 44 . . Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61843261 61843261 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ANK3 NM_001204404 exon34 c.T4192C p.F1398L TGGAAAATGGCAG . 59.0 4.0 88.0 0.0 . 703 . . Atlas-SNP CCAR1 55749 hgsc.bcm.edu hg19 10 70515291 70515291 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCAR1 NM_018237 exon13 c.A1623G p.Q541Q CACACAATGGTAA . 95.0 4.0 160.0 0.0 . 118 . . Atlas-SNP STOX1 219736 hgsc.bcm.edu hg19 10 70641820 70641820 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . STOX1 NM_001130160 exon2 c.A417G p.V139V GATTGTAGTAACG . 85.0 4.0 161.0 0.0 . 75 . . Atlas-SNP HKDC1 80201 hgsc.bcm.edu hg19 10 71025391 71025391 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HKDC1 NM_025130 exon17 c.T2423C p.L808P TGGGCCTGGACAG . 88.0 27.0 76.0 0.0 . 98 . . Atlas-SNP PALD1 27143 hgsc.bcm.edu hg19 10 72292498 72292498 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_014431 exon6 c.A755G p.E252G CGGAGGAGGTGTA . 79.0 4.0 94.0 0.0 . . . . Atlas-SNP KAT6B 23522 hgsc.bcm.edu hg19 10 76735857 76735857 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_012330 exon8 c.T1762C p.F588L CACTTCTTTGGCA . 64.0 4.0 86.0 0.0 . . . . Atlas-SNP KCNMA1 3778 hgsc.bcm.edu hg19 10 78669796 78669796 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 KCNMA1_ENST00000406533,bladder,carcinoma,-2,1 KCNMA1 NM_001161352 exon25 c.A3075G p.E1025E GTACAGTTCTGTA . 39.0 4.0 61.0 0.0 . 370 . . Atlas-SNP KIF20B 9585 hgsc.bcm.edu hg19 10 91484863 91484863 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIF20B NM_016195 exon15 c.A1949G p.D650G AATGTGACACTCG . 74.0 4.0 104.0 0.0 . 191 . . Atlas-SNP IDE 3416 hgsc.bcm.edu hg19 10 94268589 94268589 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . IDE NM_004969 exon7 c.T956C p.I319T TCAGGTATGGGAA . 85.0 4.0 105.0 0.0 . 77 . . Atlas-SNP MYOF 26509 hgsc.bcm.edu hg19 10 95109578 95109578 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MYOF NM_013451 exon36 c.T4070C p.L1357P ATGAAGAGAACAG . 83.0 4.0 147.0 0.0 . 177 . . Atlas-SNP R3HCC1L 27291 hgsc.bcm.edu hg19 10 99991351 99991351 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . R3HCC1L NM_001256619 exon7 c.T1910C p.L637P TTGACCTCAGTGA . 75.0 5.0 124.0 0.0 . 3 . . Atlas-SNP CCDC147 159686 hgsc.bcm.edu hg19 10 106128250 106128250 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC147 NM_001008723 exon6 c.A862G p.N288D CAAGAGAATGAAC . 73.0 4.0 80.0 0.0 . 137 . . Atlas-SNP CCDC147 159686 hgsc.bcm.edu hg19 10 106160619 106160619 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC147 NM_001008723 exon13 c.A1997G p.K666R GGGAAAAGGGGAT . 87.0 4.0 80.0 0.0 . 137 . . Atlas-SNP SHOC2 8036 hgsc.bcm.edu hg19 10 112771425 112771425 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SHOC2 NM_007373 exon9 c.T1598C p.L533P ATAGCCTTCCCTT . 82.0 4.0 99.0 0.0 . 49 . . Atlas-SNP C10orf137 26098 hgsc.bcm.edu hg19 10 127431772 127431772 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . C10orf137 NM_001202438 exon18 c.A2517G p.R839R AAAGAGAATGGGT . 84.0 4.0 99.0 0.0 . 153 . . Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134732917 134732917 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TTC40 NM_001200049 exon15 c.T1760C p.V587A CGGGCCACTTTGG . 77.0 4.0 105.0 0.0 . 100 . . Atlas-SNP OR52B4 143496 hgsc.bcm.edu hg19 11 4389188 4389188 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OR52B4 NM_001005161 exon1 c.A338G p.E113G CCTGACTCAGAGA . 83.0 4.0 101.0 0.0 . 56 . . Atlas-SNP USH1C 10083 hgsc.bcm.edu hg19 11 17522671 17522671 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . USH1C NM_153676 exon23 c.A2307G p.E769E ACCGCCTTCCAGG . 79.0 4.0 86.0 0.0 . 157 . . Atlas-SNP NELL1 4745 hgsc.bcm.edu hg19 11 20940817 20940817 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NELL1 NM_006157 exon7 c.T696C p.D232D CAGTGATTTCTTA . 97.0 5.0 117.0 0.0 . 179 . . Atlas-SNP SLC5A12 159963 hgsc.bcm.edu hg19 11 26708028 26708028 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLC5A12 NM_178498 exon10 c.T1217C p.V406A ACCTGCACAACAC . 76.0 4.0 82.0 0.0 . 134 . . Atlas-SNP PRDM11 56981 hgsc.bcm.edu hg19 11 45203337 45203337 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PRDM11 NM_001256695 exon2 c.A20G p.E7G TGAAGGAGTGCTT . 33.0 4.0 27.0 0.0 . 53 . . Atlas-SNP CELF1 10658 hgsc.bcm.edu hg19 11 47510436 47510436 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CELF1 NM_001172639 exon4 c.A212G p.E71G TTGATTTCATACA . 85.0 4.0 87.0 0.0 . 43 . . Atlas-SNP OSBP 5007 hgsc.bcm.edu hg19 11 59347665 59347665 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OSBP NM_002556 exon11 c.T1860C p.S620S ATCCCGAGAGAAG . 44.0 4.0 57.0 0.0 . 57 . . Atlas-SNP MS4A14 84689 hgsc.bcm.edu hg19 11 60184403 60184403 + Nonsense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MS4A14 NM_001261828 exon6 c.G2061A p.W687X ATTCTGGCAATTC . 90.0 17.0 102.0 0.0 . 120 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62286551 62286551 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AHNAK NM_001620 exon5 c.T15338C p.L5113P CCCTCCAGTTTGG . 96.0 4.0 127.0 0.0 . 532 . . Atlas-SNP INTS5 80789 hgsc.bcm.edu hg19 11 62417403 62417403 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . INTS5 NM_030628 exon2 c.T149C p.L50P GCTGAGAGTTGGT . 93.0 4.0 95.0 0.0 . 81 . . Atlas-SNP SF1 7536 hgsc.bcm.edu hg19 11 64534515 64534515 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SF1 NM_001178030 exon12 c.C1814T p.P605L GGCGGCGGCGGCA . 74.0 14.0 61.0 0.0 . 124 . . Atlas-SNP PACS1 55690 hgsc.bcm.edu hg19 11 66006669 66006669 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PACS1 NM_018026 exon21 c.T2350C p.S784P CCACCCTCCAGCT . 95.0 5.0 88.0 0.0 . 71 . . Atlas-SNP SPTBN2 6712 hgsc.bcm.edu hg19 11 66472881 66472881 + Missense_Mutation SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPTBN2 NM_006946 exon14 c.C1866G p.S622R CTCATAGCTCTGC . 118.0 73.0 96.0 0.0 . 188 . . Atlas-SNP TENM4 26011 hgsc.bcm.edu hg19 11 78467981 78467981 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_001098816 exon19 c.T2625C p.P875P GTCCAGAGGGTTA . 98.0 4.0 100.0 0.0 . . . . Atlas-SNP CCDC90B 60492 hgsc.bcm.edu hg19 11 82984887 82984887 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC90B NM_021825 exon6 c.A489G p.R163R ATCTGCTCTGATT . 93.0 4.0 137.0 0.0 . 20 . . Atlas-SNP SYTL2 54843 hgsc.bcm.edu hg19 11 85420461 85420461 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SYTL2 NM_206927 exon7 c.A2927G p.Y976C TCCACATATTCAA . 92.0 4.0 97.0 0.0 . 231 . . Atlas-SNP KDM4D 55693 hgsc.bcm.edu hg19 11 94731384 94731384 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KDM4D NM_018039 exon3 c.T848C p.F283S CTGGCTTCAACCA . 85.0 5.0 107.0 0.0 . 58 . . Atlas-SNP MMP10 4319 hgsc.bcm.edu hg19 11 102641564 102641564 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MMP10 NM_002425 exon10 c.T1391C p.V464A TGTGTCACCATCC . 96.0 4.0 88.0 0.0 . 44 . . Atlas-SNP DDI1 414301 hgsc.bcm.edu hg19 11 103908147 103908147 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 DDI1_ENST00000302259,colon,carcinoma,+2,2 DDI1 NM_001001711 exon1 c.T597C p.R199R GCTTCGTCTCTAC . 64.0 3.0 68.0 0.0 . 222 . . Atlas-SNP ATM 472 hgsc.bcm.edu hg19 11 108138031 108138031 + Missense_Mutation SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ATM NM_000051 exon17 c.G2600C p.S867T GTGTTAGTGATGC . 68.0 31.0 124.0 0.0 . 1657 . . Atlas-SNP DSCAML1 57453 hgsc.bcm.edu hg19 11 117376187 117376187 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 DSCAML1,NS,carcinoma,0,1 DSCAML1 NM_020693 exon9 c.C2224T p.R742C GCTGGCGCTCCCG . 98.0 4.0 74.0 0.0 . 286 . . Atlas-SNP NCAPD3 23310 hgsc.bcm.edu hg19 11 134072727 134072727 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NCAPD3 NM_015261 exon13 c.A1599G p.E533E AACTGTTTCACCA . 97.0 4.0 142.0 0.0 . 141 . . Atlas-SNP TEAD4 7004 hgsc.bcm.edu hg19 12 3128294 3128294 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TEAD4 NM_003213 exon8 c.T541C p.S181P CCTTTCTCTCAGC . 93.0 4.0 120.0 0.0 . 45 . . Atlas-SNP PZP 5858 hgsc.bcm.edu hg19 12 9334596 9334596 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PZP NM_002864 exon14 c.A1664G p.E555G TCAATCTCAAATT . 123.0 6.0 132.0 0.0 . 422 . . Atlas-SNP EPS8 2059 hgsc.bcm.edu hg19 12 15774278 15774278 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EPS8 NM_004447 exon21 c.A2442G p.E814E AAAAGATTCCACT . 67.0 6.0 64.0 0.0 . 70 . . Atlas-SNP SLCO1B1 10599 hgsc.bcm.edu hg19 12 21392086 21392086 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLCO1B1 NM_006446 exon15 c.T2039C p.V680A ATTTTGTCCCTTC . 70.0 4.0 67.0 0.0 . 151 . . Atlas-SNP SLCO1A2 6579 hgsc.bcm.edu hg19 12 21453353 21453353 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLCO1A2 NM_134431 exon9 c.A839G p.D280G ATGATGTCAGCAT . 44.0 4.0 64.0 0.0 . 107 . . Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26568256 26568256 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ITPR2 NM_002223 exon51 c.A7286G p.K2429R CGGTTTTTCAGCC . 100.0 4.0 87.0 0.0 . 270 . . Atlas-SNP BICD1 636 hgsc.bcm.edu hg19 12 32369322 32369322 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BICD1 NM_001714 exon2 c.A355G p.S119G AAACAGAGCCGGG . 116.0 5.0 127.0 0.0 . 89 . . Atlas-SNP BICD1 636 hgsc.bcm.edu hg19 12 32520657 32520657 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BICD1 NM_001714 exon9 c.A2818G p.R940G GCCGGGAGGCAAG . 73.0 4.0 60.0 0.0 . 89 . . Atlas-SNP RACGAP1 29127 hgsc.bcm.edu hg19 12 50384062 50384062 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RACGAP1 NM_013277 exon19 c.A1888G p.M630V TGAGCATTGGAGA . 75.0 5.0 83.0 0.0 . 36 . . Atlas-SNP OR10A7 121364 hgsc.bcm.edu hg19 12 55614885 55614885 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OR10A7 NM_001005280 exon1 c.C77A p.S26Y AAGTTTCCCTCTT . 176.0 82.0 263.0 1.0 . 53 . . Atlas-SNP MARS 4141 hgsc.bcm.edu hg19 12 57905511 57905511 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MARS NM_004990 exon12 c.A1399G p.R467G TTGGGGAGGACAT . 124.0 5.0 101.0 0.0 . 84 . . Atlas-SNP LRIG3 121227 hgsc.bcm.edu hg19 12 59274407 59274407 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . LRIG3 NM_153377 exon13 c.A1757G p.H586R CCAAAGTGATTGG . 119.0 5.0 135.0 0.0 . 120 . . Atlas-SNP LRIG3 121227 hgsc.bcm.edu hg19 12 59276667 59276667 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 LRIG3,NS,carcinoma,0,1 LRIG3 NM_153377 exon12 c.A1464G p.P488P GCCATCTGGGCTA . 72.0 3.0 69.0 0.0 . 120 . . Atlas-SNP TMBIM4 51643 hgsc.bcm.edu hg19 12 66531841 66531841 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TMBIM4 NM_016056 exon7 c.T616C p.S206P CAGGTGACAGTTT . 81.0 4.0 114.0 0.0 . 47 . . Atlas-SNP CPSF6 11052 hgsc.bcm.edu hg19 12 69644987 69644987 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CPSF6 NM_007007 exon2 c.C139T p.P47S GATGCCCCAGAAG . 69.0 4.0 89.0 0.0 . 96 . . Atlas-SNP CNOT2 4848 hgsc.bcm.edu hg19 12 70724192 70724192 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CNOT2 NM_001199302 exon7 c.C512A p.P171Q GCTCGCCAAGCAT . 126.0 70.0 199.0 0.0 . 53 . . Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78388596 78388596 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NAV3 NM_014903 exon6 c.T685C p.Y229H GCCAGATATGCAA . 56.0 4.0 89.0 0.0 . 506 . . Atlas-SNP PPP1R12A 4659 hgsc.bcm.edu hg19 12 80191131 80191131 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPP1R12A NM_002480 exon16 c.A2136G p.G712G ACTTCTTCCTATT . 69.0 4.0 97.0 0.0 . 76 . . Atlas-SNP VEZT 55591 hgsc.bcm.edu hg19 12 95650962 95650962 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . VEZT NM_017599 exon3 c.A205G p.S69G ATCAAAAGTTGGA . 42.0 4.0 75.0 0.0 . 106 . . Atlas-SNP IKBIP 121457 hgsc.bcm.edu hg19 12 99007913 99007913 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . IKBIP NM_201612 exon3 c.T503C p.V168A AGACCAACATCTT . 79.0 4.0 101.0 0.0 . 46 . . Atlas-SNP BCL7A 605 hgsc.bcm.edu hg19 12 122492735 122492735 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BCL7A NM_020993 exon5 c.A464G p.Q155R ATTCACAGTCCTC . 75.0 4.0 68.0 0.0 . 31 . . Atlas-SNP TMEM132C 92293 hgsc.bcm.edu hg19 12 129189690 129189690 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TMEM132C NM_001136103 exon9 c.A2177G p.D726G CCCTGGACATCTA . 45.0 4.0 49.0 0.0 . 142 . . Atlas-SNP RAN 5901 hgsc.bcm.edu hg19 12 131359255 131359255 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RAN NM_006325 exon5 c.T412C p.F138L ATTGTCTTCCACC . 95.0 4.0 114.0 0.0 . 18 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23915617 23915617 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 SACS,colon,carcinoma,0,1 SACS NM_014363 exon10 c.A2398G p.M800V GTGGCATCTCATC . 35.0 2.0 50.0 0.0 . 871 . . Atlas-SNP RNF17 56163 hgsc.bcm.edu hg19 13 25399863 25399863 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RNF17 NM_001184993 exon16 c.G2198A p.C733Y AAGCCTGTGTAGC . 45.0 4.0 87.0 0.0 . 259 . . Atlas-SNP FRY 10129 hgsc.bcm.edu hg19 13 32698997 32698997 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FRY NM_023037 exon7 c.T701C p.V234A TTGGAGTGTTGGC . 87.0 4.0 92.0 0.0 . 312 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35758164 35758164 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NBEA NM_015678 exon30 c.C4883A p.A1628D TCCTTGCCAAGTT . 126.0 73.0 149.0 0.0 . 340 . . Atlas-SNP NAA16 79612 hgsc.bcm.edu hg19 13 41891035 41891035 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NAA16 NM_001110798 exon2 c.T108C p.I36I GATGATTCTGTCG . 81.0 4.0 86.0 0.0 . 74 . . Atlas-SNP AKAP11 11215 hgsc.bcm.edu hg19 13 42875524 42875524 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AKAP11 NM_016248 exon8 c.A2642G p.H881R TGGTGCATACGAT . 116.0 5.0 93.0 0.0 . 146 . . Atlas-SNP NALCN 259232 hgsc.bcm.edu hg19 13 101890168 101890168 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 NALCN,NS,carcinoma,0,1 NALCN NM_052867 exon12 c.G1372A p.V458I CAATTACGAGTAG . 41.0 2.0 75.0 0.0 . 431 . . Atlas-SNP TPPP2 122664 hgsc.bcm.edu hg19 14 21500171 21500171 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 TPPP2,NS,carcinoma,0,1 TPPP2 NM_173846 exon4 c.A448G p.T150A GAGATGACTGACA . 63.0 3.0 96.0 0.0 . 22 . . Atlas-SNP PSME1 5720 hgsc.bcm.edu hg19 14 24607958 24607958 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PSME1 NM_006263 exon11 c.A683G p.D228G TATATGACATCAT . 69.0 4.0 83.0 0.0 . 18 . . Atlas-SNP RNF31 55072 hgsc.bcm.edu hg19 14 24618770 24618770 + Nonsense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 RNF31,NS,carcinoma,-2,1 RNF31 NM_017999 exon6 c.C787T p.Q263X GTCCTGCAGGGTA . 43.0 2.0 66.0 0.0 . 95 . . Atlas-SNP KIAA0391 9692 hgsc.bcm.edu hg19 14 35593210 35593210 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIAA0391 NM_014672 exon2 c.A759G p.G253G CCAGGGAGCTCTC . 68.0 4.0 95.0 0.0 . 35 . . Atlas-SNP ATG14 22863 hgsc.bcm.edu hg19 14 55836380 55836380 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ATG14 NM_014924 exon10 c.C1436A p.A479D ACCGAGGCTGCTG . 93.0 4.0 115.0 0.0 . 36 . . Atlas-SNP RTN1 6252 hgsc.bcm.edu hg19 14 60070638 60070638 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RTN1 NM_021136 exon6 c.T2114C p.F705S ACTGCAAACTGAA . 43.0 4.0 41.0 0.0 . 139 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64519805 64519805 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SYNE2 NM_182914 exon48 c.T9174C p.I3058I AGCTATTGATTTG . 84.0 4.0 146.0 0.0 . 577 . . Atlas-SNP ZBTB1 22890 hgsc.bcm.edu hg19 14 64989571 64989571 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZBTB1 NM_014950 exon2 c.G1349T p.C450F GTGCATGTGGTAA . 62.0 44.0 88.0 0.0 . 93 . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68248209 68248209 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZFYVE26 NM_015346 exon22 c.T4410C p.D1470D AGATGCATCCTTC . 49.0 4.0 68.0 0.0 . 223 . . Atlas-SNP RGS6 9628 hgsc.bcm.edu hg19 14 72945005 72945005 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RGS6 NM_001204424 exon12 c.A822G p.R274R CGACAGACATTGT . 61.0 4.0 95.0 0.0 . 92 . . Atlas-SNP ZC3H14 79882 hgsc.bcm.edu hg19 14 89039002 89039002 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZC3H14 NM_001160104 exon6 c.T512C p.V171A AAGATGTGATTGA . 90.0 4.0 131.0 0.0 . 71 . . Atlas-SNP CCDC88C 440193 hgsc.bcm.edu hg19 14 91770230 91770230 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC88C NM_001080414 exon20 c.C3450T p.N1150N GCTTTCGTTCTCC . 76.0 5.0 104.0 0.0 . 192 . . Atlas-SNP SLC24A4 123041 hgsc.bcm.edu hg19 14 92790275 92790275 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLC24A4 NM_153647 exon2 c.G101A p.C34Y TGGTGTGCTGTGC . 90.0 15.0 79.0 0.0 . 112 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94007149 94007149 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UNC79 NM_020818 exon13 c.T965C p.L322P AGAGGCTGCTCAG . 75.0 4.0 91.0 0.0 . 366 . . Atlas-SNP EHD4 30844 hgsc.bcm.edu hg19 15 42245961 42245961 + Splice_Site SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EHD4 NM_139265 exon3 c.413+1G>T . TCCTTACCGATTC . 66.0 36.0 77.0 0.0 . 46 . . Atlas-SNP CEP152 22995 hgsc.bcm.edu hg19 15 49060502 49060502 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CEP152 NM_014985 exon15 c.A1932G p.K644K TCTCAGTTTTCCT . 83.0 4.0 100.0 0.0 . 145 . . Atlas-SNP FAM81A 145773 hgsc.bcm.edu hg19 15 59801108 59801108 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM81A NM_152450 exon6 c.G590A p.S197N AGCAGAGCACCAA . 567.0 149.0 583.0 0.0 . 31 . . Atlas-SNP CLN6 54982 hgsc.bcm.edu hg19 15 68500609 68500609 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CLN6 NM_017882 exon7 c.A805G p.T269A AGAGGGTCAGTGC . 113.0 6.0 121.0 0.0 . 16 . . Atlas-SNP PAQR5 54852 hgsc.bcm.edu hg19 15 69672244 69672244 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PAQR5 NM_001104554 exon4 c.T74C p.L25P GCATCCTGTTCGG . 90.0 4.0 80.0 0.0 . 35 . . Atlas-SNP RCCD1 91433 hgsc.bcm.edu hg19 15 91500890 91500890 + Missense_Mutation SNP A A G rs75741610 bycluster TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RCCD1 NM_001017919 exon4 c.A614G p.E205G TGTTGGAGGCGTT . 121.0 10.0 99.0 0.0 . 9 . . Atlas-SNP CHD2 1106 hgsc.bcm.edu hg19 15 93489406 93489406 + Missense_Mutation SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CHD2 NM_001042572 exon12 c.G1337C p.S446T TCCACAGTAGGAA . 186.0 68.0 276.0 1.0 . 280 . . Atlas-SNP CHD2 1106 hgsc.bcm.edu hg19 15 93489423 93489423 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CHD2 NM_001042572 exon12 c.A1354G p.T452A TCAAAAACCATCC . 199.0 76.0 288.0 0.0 . 280 . . Atlas-SNP MRPS34 65993 hgsc.bcm.edu hg19 16 1822511 1822511 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 MRPS34,bladder,carcinoma,0,1 MRPS34 NM_023936 exon3 c.A368G p.K123R TCAGTCTTCCCTG . 65.0 3.0 89.0 0.0 . 7 . . Atlas-SNP SHISA9 729993 hgsc.bcm.edu hg19 16 13002438 13002438 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SHISA9 NM_001145205 exon2 c.A666G p.X222W AGTCTGAGTGCAC . 96.0 4.0 84.0 0.0 . 33 . . Atlas-SNP SPN 6693 hgsc.bcm.edu hg19 16 29675097 29675097 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPN NM_001030288 exon2 c.C48T p.D16D CCCAGACGCTCTG . 100.0 4.0 105.0 0.0 . 44 . . Atlas-SNP VPS35 55737 hgsc.bcm.edu hg19 16 46708512 46708512 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . VPS35 NM_018206 exon9 c.T975C p.F325F TATATCAAAAAGT . 77.0 4.0 100.0 0.0 . 49 . . Atlas-SNP HEATR3 55027 hgsc.bcm.edu hg19 16 50136189 50136189 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HEATR3 NM_182922 exon14 c.T1763C p.L588P TTCTGCTTGAAGT . 79.0 4.0 100.0 0.0 . 59 . . Atlas-SNP RBL2 5934 hgsc.bcm.edu hg19 16 53513864 53513864 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RBL2 NM_005611 exon19 c.A2842G p.S948G AGCAGAAGCCATC . 98.0 4.0 141.0 0.0 . 115 . . Atlas-SNP TSNAXIP1 55815 hgsc.bcm.edu hg19 16 67859617 67859617 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TSNAXIP1 NM_018430 exon8 c.A700G p.T234A AAGATGACCCGGC . 80.0 4.0 74.0 0.0 . 66 . . Atlas-SNP ABR 29 hgsc.bcm.edu hg19 17 975915 975915 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ABR NM_021962 exon8 c.T833C p.L278P CTGGACAGGAAGT . 121.0 5.0 153.0 0.0 . 119 . . Atlas-SNP PRPF8 10594 hgsc.bcm.edu hg19 17 1585147 1585147 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PRPF8 NM_006445 exon5 c.T620C p.F207S TCATAGAACCAGT . 89.0 4.0 127.0 0.0 . 169 . . Atlas-SNP ZNF232 7775 hgsc.bcm.edu hg19 17 5009459 5009459 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 ZNF232,NS,carcinoma,0,1 ZNF232 NM_014519 exon5 c.A995G p.K332R CTACACTTATAGG . 24.0 2.0 44.0 0.0 . 42 . . Atlas-SNP SCIMP 388325 hgsc.bcm.edu hg19 17 5124625 5124625 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_207103 exon3 c.A166G p.K56E GGGGCTTGGCAAT . 99.0 4.0 116.0 0.0 . . . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577534 7577534 + Missense_Mutation SNP C C A rs28934571 bycluster TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1 TP53 NM_000546 exon7 c.G747T p.R249S GATGGGCCTCCGG . 123.0 91.0 191.0 0.0 . 33396 . . Atlas-SNP NCOR1 9611 hgsc.bcm.edu hg19 17 15973762 15973762 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NCOR1 NM_001190440 exon30 c.T4278C p.P1426P TTTGCTAGGCCCC . 85.0 4.0 143.0 0.0 . 240 . . Atlas-SNP KIAA0100 9703 hgsc.bcm.edu hg19 17 26946934 26946934 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 KIAA0100,colon,carcinoma,0,1 KIAA0100 NM_014680 exon30 c.C5464T p.R1822W GCTGCCGCACAGC . 82.0 4.0 69.0 0.0 . 175 . . Atlas-SNP RFFL 117584 hgsc.bcm.edu hg19 17 33339090 33339090 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RFFL NM_001017368 exon7 c.A989G p.E330G CCACACTCCAGAA . 119.0 5.0 114.0 0.0 . 27 . . Atlas-SNP NLE1 54475 hgsc.bcm.edu hg19 17 33460235 33460235 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NLE1 NM_018096 exon12 c.A1400G p.D467G TGGCCATCTGGAC . 97.0 4.0 106.0 0.0 . 42 . . Atlas-SNP ACACA 31 hgsc.bcm.edu hg19 17 35598870 35598870 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ACACA NM_198834 exon23 c.A3031G p.R1011G ACTACCTCTGTAC . 87.0 4.0 135.0 0.0 . 395 . . Atlas-SNP MED1 5469 hgsc.bcm.edu hg19 17 37566928 37566928 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MED1 NM_004774 exon17 c.G1546A p.E516K TGGTTTCAGCTTT . 130.0 6.0 181.0 0.0 . 123 . . Atlas-SNP PSMD3 5709 hgsc.bcm.edu hg19 17 38140566 38140566 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PSMD3 NM_002809 exon2 c.A240G p.K80K CGTGAAACAGCTA . 99.0 4.0 99.0 0.0 . 56 . . Atlas-SNP KLHL11 55175 hgsc.bcm.edu hg19 17 40010298 40010298 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KLHL11 NM_018143 exon2 c.C1821T p.Y607Y ATCTTTGTAATAG . 81.0 4.0 119.0 0.0 . 44 . . Atlas-SNP HDAC5 10014 hgsc.bcm.edu hg19 17 42168677 42168677 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HDAC5 NM_001015053 exon11 c.T1351C p.L451L CCAGCAACAGCAC . 109.0 5.0 75.0 0.0 . 67 . . Atlas-SNP UBTF 7343 hgsc.bcm.edu hg19 17 42284734 42284734 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UBTF NM_014233 exon21 c.A2171G p.N724S TCTTCATTCTGGG . 104.0 5.0 121.0 0.0 . 65 . . Atlas-SNP WNT9B 7484 hgsc.bcm.edu hg19 17 44953863 44953863 + Nonsense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . WNT9B NM_003396 exon4 c.G853T p.E285X TACATGGAGGACT . 137.0 76.0 145.0 0.0 . 37 . . Atlas-SNP IGF2BP1 10642 hgsc.bcm.edu hg19 17 47103022 47103022 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . IGF2BP1 NM_001160423 exon3 c.A279G p.R93R GCTCCGATGGGAA . 99.0 4.0 100.0 0.0 . 80 . . Atlas-SNP KAT7 11143 hgsc.bcm.edu hg19 17 47874270 47874270 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_007067 exon3 c.G322T p.V108F CAAGTGGTTGATT . 121.0 99.0 146.0 0.0 . . . . Atlas-SNP TEX2 55852 hgsc.bcm.edu hg19 17 62290595 62290595 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TEX2 NM_018469 exon2 c.T983C p.L328P TTGGAGAGTTCTG . 100.0 4.0 88.0 0.0 . 89 . . Atlas-SNP ABCA9 10350 hgsc.bcm.edu hg19 17 67041411 67041411 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ABCA9 NM_080283 exon4 c.A371G p.D124G ACTGCGTCTATTG . 87.0 4.0 103.0 0.0 . 192 . . Atlas-SNP GPR142 350383 hgsc.bcm.edu hg19 17 72368628 72368628 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GPR142 NM_181790 exon4 c.A1278G p.R426R TGTCCGACAGGTC . 99.0 5.0 91.0 0.0 . 74 . . Atlas-SNP ITGB4 3691 hgsc.bcm.edu hg19 17 73751906 73751906 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ITGB4 NM_000213 exon35 c.T4683C p.S1561S CTACAGTGTGGAG . 112.0 5.0 63.0 0.0 . 165 . . Atlas-SNP DNAH17 8632 hgsc.bcm.edu hg19 17 76503588 76503588 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DNAH17 NM_173628 exon28 c.G4536C p.Q1512H CGGGAGCTGGGTG . 151.0 30.0 129.0 0.0 . 347 . . Atlas-SNP C17orf70 80233 hgsc.bcm.edu hg19 17 79517603 79517603 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . C17orf70 NM_025161 exon3 c.A917G p.D306G TGCACATCCTCGT . 118.0 5.0 116.0 0.0 . 79 . . Atlas-SNP NDC80 10403 hgsc.bcm.edu hg19 18 2578079 2578079 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 NDC80,colon,carcinoma,0,1 NDC80 NM_006101 exon5 c.T415C p.S139P TGCCCCTCATACG . 102.0 7.0 148.0 0.0 . 62 . . Atlas-SNP SPIRE1 56907 hgsc.bcm.edu hg19 18 12453092 12453092 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPIRE1 NM_001128626 exon14 c.T1822C p.S608P TATAAGACCAAGT . 59.0 4.0 111.0 0.0 . 120 . . Atlas-SNP CEP192 55125 hgsc.bcm.edu hg19 18 13103589 13103589 + Splice_Site SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 CEP192_ENST00000506447,NS,neuroblastoma,0,2 CEP192 NM_032142 exon39 c.6951+2T>C . TCAAGGTCAGTCA . 69.0 4.0 89.0 0.0 . 340 . . Atlas-SNP ELP2 55250 hgsc.bcm.edu hg19 18 33709907 33709907 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 ELP2_ENST00000350494,NS,carcinoma,0,2 ELP2 NM_001242879 exon1 c.C11T p.P4L TGGCACCCGTGCT . 97.0 4.0 112.0 0.0 . 70 . . Atlas-SNP MOCOS 55034 hgsc.bcm.edu hg19 18 33775247 33775247 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 MOCOS,NS,carcinoma,0,1 MOCOS NM_017947 exon2 c.C170A p.A57D CAGGTGCCACCTT . 34.0 2.0 76.0 0.0 . 84 . . Atlas-SNP SETBP1 26040 hgsc.bcm.edu hg19 18 42533197 42533197 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SETBP1 NM_015559 exon4 c.A3892G p.S1298G AGTGGGAGTAAAA . 54.0 4.0 82.0 0.0 . 577 . . Atlas-SNP TCEB3B 51224 hgsc.bcm.edu hg19 18 44560140 44560140 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TCEB3B NM_016427 exon1 c.A1496G p.E499G GCTTCCTCCCGGA . 113.0 5.0 169.0 0.0 . 141 . . Atlas-SNP ALPK2 115701 hgsc.bcm.edu hg19 18 56246468 56246468 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 ALPK2_ENST00000361673,colon,carcinoma,0,2 ALPK2 NM_052947 exon4 c.A1540G p.T514A CTGCCGTCTCCCA . 66.0 3.0 115.0 0.0 . 487 . . Atlas-SNP HMHA1 23526 hgsc.bcm.edu hg19 19 1074826 1074826 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HMHA1 NM_001258328 exon10 c.A1181G p.E394G AACACGAGAAGCG . 73.0 4.0 38.0 0.0 . 78 . . Atlas-SNP MUM1 84939 hgsc.bcm.edu hg19 19 1360617 1360617 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MUM1 NM_032853 exon5 c.T700C p.S234P GGATCTTCCCTTT . 88.0 4.0 80.0 0.0 . 54 . . Atlas-SNP ARHGEF18 23370 hgsc.bcm.edu hg19 19 7533871 7533871 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ARHGEF18 NM_001130955 exon17 c.T3077C p.V1026A GCGATGTGCCCAT . 69.0 4.0 46.0 0.0 . 129 . . Atlas-SNP KRI1 65095 hgsc.bcm.edu hg19 19 10671691 10671691 + Silent SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KRI1 NM_023008 exon8 c.C669G p.S223S CTTCAGGGAATCT . 110.0 26.0 93.0 0.0 . 65 . . Atlas-SNP C19orf57 79173 hgsc.bcm.edu hg19 19 14000257 14000257 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . C19orf57 NM_024323 exon6 c.A1412G p.E471G AACCCCTCGAGGT . 91.0 4.0 78.0 0.0 . 34 . . Atlas-SNP ZNF253 56242 hgsc.bcm.edu hg19 19 20003478 20003478 + Silent SNP T T C rs377662376 TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF253 NM_021047 exon4 c.T1422C p.H474H AATTCATATTGAA . 57.0 4.0 59.0 0.0 . 99 . . Atlas-SNP ZNF208 7757 hgsc.bcm.edu hg19 19 22155053 22155053 + Missense_Mutation SNP C C A rs373937489 alternate_allele TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF208 NM_007153 exon4 c.G2783T p.W928L GACAACCAGCTGA . 68.0 13.0 101.0 0.0 . 817 . . Atlas-SNP GRAMD1A 57655 hgsc.bcm.edu hg19 19 35514222 35514222 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GRAMD1A NM_020895 exon18 c.T1936C p.W646R GAGTCCTGGCACA . 96.0 4.0 119.0 0.0 . 39 . . Atlas-SNP C19orf55 148137 hgsc.bcm.edu hg19 19 36258938 36258938 + Splice_Site SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 .,11 C19orf55 NM_001039887 exon9 c.1190+1G>A . TGCCCAGGGCCGC . 9.0 2.0 6.0 0.0 . 39 . . Atlas-SNP KIRREL2 84063 hgsc.bcm.edu hg19 19 36353409 36353409 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIRREL2 NM_199180 exon12 c.G1525A p.V509M CCCACTGTGCGGA . 74.0 4.0 50.0 0.0 . 170 . . Atlas-SNP ZNF345 25850 hgsc.bcm.edu hg19 19 37368330 37368330 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF345 NM_001242476 exon4 c.A598G p.K200E GGTGAGAAACCTT . 76.0 4.0 61.0 0.0 . 68 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38383676 38383676 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . WDR87 NM_031951 exon4 c.G2550C p.M850I AAGTCTCATTTCT . 124.0 7.0 123.0 0.0 . 191 . . Atlas-SNP AXL 558 hgsc.bcm.edu hg19 19 41762508 41762508 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AXL NM_021913 exon18 c.A2188G p.S730G AGCAAGAGCGATG . 122.0 5.0 112.0 0.0 . 126 . . Atlas-SNP CCDC8 83987 hgsc.bcm.edu hg19 19 46915065 46915065 + Missense_Mutation SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC8 NM_032040 exon1 c.C1003G p.Q335E CCCTCTGATTATC . 160.0 20.0 205.0 0.0 . 56 . . Atlas-SNP PRKD2 25865 hgsc.bcm.edu hg19 19 47207810 47207810 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PRKD2 NM_016457 exon4 c.G608C p.S203T TGGCCACTGGCCA . 100.0 26.0 106.0 0.0 . 94 . . Atlas-SNP ARHGAP35 2909 hgsc.bcm.edu hg19 19 47424967 47424967 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_004491 exon1 c.T3035C p.L1012P CTAAGCTCTCTAT . 123.0 5.0 113.0 0.0 . . . . Atlas-SNP C5AR2 27202 hgsc.bcm.edu hg19 19 47844736 47844736 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_001271750 exon2 c.C680A p.A227E GCTGGGCAGCCCG . 38.0 16.0 27.0 0.0 . . . . Atlas-SNP TBC1D17 79735 hgsc.bcm.edu hg19 19 50381446 50381446 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TBC1D17 NM_024682 exon2 c.A68G p.K23R CTAAGAAGTATCA . 89.0 4.0 77.0 0.0 . 39 . . Atlas-SNP SIGLEC7 27036 hgsc.bcm.edu hg19 19 51649119 51649119 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SIGLEC7 NM_014385 exon4 c.A768G p.T256T ATCCACAGCTCTG . 61.0 4.0 72.0 0.0 . 74 . . Atlas-SNP ZNF836 162962 hgsc.bcm.edu hg19 19 52658668 52658668 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF836 NM_001102657 exon5 c.C2268T p.G756G GACCTGGCCACAT . 64.0 4.0 96.0 0.0 . 158 . . Atlas-SNP ZNF534 147658 hgsc.bcm.edu hg19 19 52938454 52938454 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF534 NM_001143939 exon3 c.T302C p.V101A AAGGTGTGAACAC . 92.0 4.0 108.0 0.0 . 105 . . Atlas-SNP CACNG8 59283 hgsc.bcm.edu hg19 19 54485412 54485412 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CACNG8 NM_031895 exon4 c.A587G p.K196R AGGAGAAGAAAAA . 106.0 5.0 82.0 0.0 . 29 . . Atlas-SNP ZNF17 7565 hgsc.bcm.edu hg19 19 57932584 57932584 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF17 NM_006959 exon3 c.T1724C p.V575A AAAAAGTTCACAC . 79.0 4.0 100.0 0.0 . 49 . . Atlas-SNP ZNF549 256051 hgsc.bcm.edu hg19 19 58048846 58048846 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF549 NM_001199295 exon4 c.A474G p.K158K AGAGAAACACATC . 100.0 5.0 117.0 0.0 . 118 . . Atlas-SNP UBOX5 22888 hgsc.bcm.edu hg19 20 3102976 3102976 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UBOX5 NM_014948 exon3 c.C309T p.G103G AGCTGGGCCCAGG . 102.0 47.0 114.0 0.0 . 47 . . Atlas-SNP OVOL2 58495 hgsc.bcm.edu hg19 20 18022310 18022310 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OVOL2 NM_021220 exon3 c.G379C p.G127R GGAAGCCCTTGCC . 142.0 6.0 157.0 0.0 . 18 . . Atlas-SNP NINL 22981 hgsc.bcm.edu hg19 20 25442240 25442240 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NINL NM_025176 exon21 c.T3614C p.L1205P CATTCAAGTTCAA . 94.0 4.0 98.0 0.0 . 148 . . Atlas-SNP ASXL1 171023 hgsc.bcm.edu hg19 20 31021502 31021502 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ASXL1 NM_015338 exon11 c.T1501C p.S501P CGTGCCTCTGCAT . 138.0 6.0 97.0 0.0 . 1114 . . Atlas-SNP SPINT3 10816 hgsc.bcm.edu hg19 20 44144183 44144183 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPINT3 NM_006652 exon1 c.A66G p.E22E TGCTAGTTCTGAT . 107.0 5.0 100.0 0.0 . 12 . . Atlas-SNP ZNF335 63925 hgsc.bcm.edu hg19 20 44586259 44586259 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF335 NM_022095 exon17 c.G2408C p.S803T TGAGCACTCATGT . 93.0 4.0 89.0 0.0 . 115 . . Atlas-SNP SPATA2 9825 hgsc.bcm.edu hg19 20 48524814 48524814 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPATA2 NM_006038 exon2 c.A214G p.S72G AGGAGCTCTCCAC . 116.0 5.0 73.0 0.0 . 36 . . Atlas-SNP FAM65C 140876 hgsc.bcm.edu hg19 20 49214133 49214133 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM65C NM_080829 exon14 c.G1762T p.G588C GGGAGCCCCCAAA . 140.0 18.0 109.0 0.0 . 87 . . Atlas-SNP SYCP2 10388 hgsc.bcm.edu hg19 20 58442784 58442784 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SYCP2 NM_014258 exon38 c.A4107G p.E1369E CTTAAATTCTGAA . 100.0 4.0 111.0 0.0 . 204 . . Atlas-SNP CDH4 1002 hgsc.bcm.edu hg19 20 60318825 60318825 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CDH4 NM_001794 exon3 c.T376C p.S126P ACCTCGTCCCCGC . 97.0 4.0 77.0 0.0 . 172 . . Atlas-SNP KCNJ6 3763 hgsc.bcm.edu hg19 21 38997717 38997717 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KCNJ6 NM_002240 exon4 c.T1016C p.V339A GTCAGGACAGGTG . 80.0 4.0 114.0 0.0 . 58 . . Atlas-SNP BRWD1 54014 hgsc.bcm.edu hg19 21 40590495 40590495 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BRWD1 NM_018963 exon30 c.T3474C p.G1158G TTTCTGACCCCAT . 86.0 5.0 92.0 0.0 . 325 . . Atlas-SNP LCA5L 150082 hgsc.bcm.edu hg19 21 40782216 40782216 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . LCA5L NM_152505 exon8 c.T1138C p.S380P CATCTGATTTTTG . 100.0 4.0 135.0 0.0 . 57 . . Atlas-SNP UBASH3A 53347 hgsc.bcm.edu hg19 21 43829672 43829672 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 UBASH3A,NS,carcinoma,0,1 UBASH3A NM_018961 exon3 c.A309G p.R103R GAACAGAGCTCAT . 41.0 2.0 77.0 0.0 . 72 . . Atlas-SNP MRPL40 64976 hgsc.bcm.edu hg19 22 19422404 19422404 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MRPL40 NM_003776 exon3 c.T283C p.L95L AAGTTCTTGGATA . 54.0 4.0 62.0 0.0 . 13 . . Atlas-SNP SGSM1 129049 hgsc.bcm.edu hg19 22 25263061 25263061 + Missense_Mutation SNP G G A rs375323027 bycluster TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SGSM1 NM_001098497 exon10 c.G928A p.V310I TCCAGCGTCTACT . 116.0 8.0 86.0 0.0 . 150 . . Atlas-SNP MYH9 4627 hgsc.bcm.edu hg19 22 36696312 36696312 + Splice_Site SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MYH9 NM_002473 exon24 c.2839-2A>G . AGCTCCTGCCGGG . 60.0 4.0 52.0 0.0 . 225 . . Atlas-SNP SMC1B 27127 hgsc.bcm.edu hg19 22 45802675 45802675 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SMC1B NM_148674 exon3 c.A370G p.I124V TGCCTATCTTTTC . 95.0 4.0 83.0 0.0 . 215 . . Atlas-SNP STS 412 hgsc.bcm.edu hg19 X 7177588 7177588 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . STS NM_000351 exon5 c.C596T p.T199I TCCTTACCCTTGC . 99.0 4.0 101.0 0.0 . 64 . . Atlas-SNP FANCB 2187 hgsc.bcm.edu hg19 X 14868753 14868753 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FANCB NM_152633 exon6 c.T1370C p.V457A ATATGGACAGAAT . 81.0 4.0 70.0 0.0 . 78 . . Atlas-SNP CA5B 11238 hgsc.bcm.edu hg19 X 15768152 15768152 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CA5B NM_007220 exon2 c.G6A p.V2V GATGGTGGTGATG . 85.0 4.0 65.0 0.0 . 23 . . Atlas-SNP PDHA1 5160 hgsc.bcm.edu hg19 X 19368150 19368150 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PDHA1 NM_001173454 exon4 c.A327G p.V109V GACTGTACGCCGA . 114.0 5.0 114.0 0.0 . 85 . . Atlas-SNP PTCHD1 139411 hgsc.bcm.edu hg19 X 23411680 23411680 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PTCHD1 NM_173495 exon3 c.T2045C p.F682S TCGTCTTCAATCC . 80.0 4.0 90.0 0.0 . 213 . . Atlas-SNP SYTL5 94122 hgsc.bcm.edu hg19 X 37913595 37913595 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SYTL5 NM_001163334 exon2 c.T249C p.A83A TCAGGCTTGCTCA . 67.0 4.0 45.0 0.0 . 72 . . Atlas-SNP SHROOM4 57477 hgsc.bcm.edu hg19 X 50351123 50351123 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SHROOM4 NM_020717 exon6 c.A3019G p.N1007D CTGGGTTCTCAAG . 99.0 5.0 102.0 0.0 . 171 . . Atlas-SNP TSPYL2 64061 hgsc.bcm.edu hg19 X 53115034 53115034 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TSPYL2 NM_022117 exon6 c.T1460C p.V487A ATGAGGTCCCCAA . 101.0 5.0 87.0 0.0 . 53 . . Atlas-SNP RPS6KA6 27330 hgsc.bcm.edu hg19 X 83389804 83389804 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RPS6KA6 NM_014496 exon8 c.A632G p.H211R TTGATATGTCCTA . 52.0 4.0 58.0 0.0 . 116 . . Atlas-SNP GPRASP2 114928 hgsc.bcm.edu hg19 X 101970641 101970641 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GPRASP2 NM_138437 exon4 c.T844C p.S282P TCCTGGTCTGGAT . 100.0 4.0 95.0 0.0 . 89 . . Atlas-SNP TMEM164 84187 hgsc.bcm.edu hg19 X 109247199 109247199 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TMEM164 NM_032227 exon2 c.A197G p.E66G CGAAGGAGGACGG . 120.0 5.0 114.0 0.0 . 59 . . Atlas-SNP PAK3 5063 hgsc.bcm.edu hg19 X 110439078 110439078 + Missense_Mutation SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PAK3 NM_001128168 exon13 c.A1227T p.Q409H CCTGCAAGCTTTG . 58.0 49.0 46.0 0.0 . 179 . . Atlas-SNP GRIA3 2892 hgsc.bcm.edu hg19 X 122551504 122551504 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GRIA3 NM_000828 exon11 c.A1752G p.E584E CTTGGAAGACAAC . 97.0 4.0 103.0 0.0 . 386 . . Atlas-SNP ARHGAP36 158763 hgsc.bcm.edu hg19 X 130222734 130222734 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ARHGAP36 NM_144967 exon12 c.C1619T p.T540I CCAAAACTGGCGT . 88.0 4.0 79.0 0.0 . 171 . . Atlas-SNP RPL10 6134 hgsc.bcm.edu hg19 X 153629200 153629200 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RPL10 NM_001256577 exon6 c.T487C p.F163L GAGGGCTTCCAAT . 100.0 5.0 82.0 0.0 . 22 . . Atlas-SNP LATS1 9113 hgsc.bcm.edu hg19 6 150001056 150001058 + In_Frame_Del DEL AGA AGA - novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 AGA AGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . LATS1 NM_004690 exon5 c.2547_2549del p.849_850del . . 150.0 116.0 208.0 0.0 . 241 . . Atlas-Indel,Pindel OPN4 94233 hgsc.bcm.edu hg19 10 88421086 88421086 + Frame_Shift_Del DEL C C - novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OPN4 NM_001030015 exon8 c.1046delT p.I349fs . . 93.0 34.0 111.0 0.0 . 61 . . Atlas-INDEL TRAK1 22906 hgsc.bcm.edu hg19 3 42234621 42234660 + Frame_Shift_Del DEL AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT - novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TRAK1 NM_001042646 exon8 c.823_862del p.275_288del . . 84.0 12.0 162.0 0.0 . 188 . . Pindel OPN4 94233 hgsc.bcm.edu hg19 10 88421086 88421087 + Frame_Shift_Del DEL CG CG - novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 CG CG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OPN4 NM_001030015 exon8 c.1046_1047del p.349_349del . . 96.0 24.0 112.0 0.0 . 61 . . Pindel