Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PLEKHG5 57449 hgsc.bcm.edu hg19 1 6530878 6530878 + Missense_Mutation SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . PLEKHG5 NM_001265592 exon15 c.C1696T p.R566W TGAGCCGCTGGTG . 75.0 47.0 52.0 0.0 . 66 . . Atlas-SNP ST6GALNAC5 81849 hgsc.bcm.edu hg19 1 77333366 77333366 + Silent SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . ST6GALNAC5 NM_030965 exon1 c.G6A p.K2K AATGAAGACCCTG . 118.0 52.0 115.0 0.0 . 59 . . Atlas-SNP RUSC1-AS1 284618 hgsc.bcm.edu hg19 1 155290718 155290718 + Missense_Mutation SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . . NM_001039517 exon2 c.G562T p.G188W GTGCCCCGCCGGG . 41.0 13.0 18.0 0.0 . . . . Atlas-SNP ADAM17 6868 hgsc.bcm.edu hg19 2 9676045 9676045 + Missense_Mutation SNP G G T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . ADAM17 NM_003183 exon4 c.C368A p.P123H GAGTCAGGCTCAC . 108.0 8.0 122.0 0.0 . 61 . . Atlas-SNP MYCN 4613 hgsc.bcm.edu hg19 2 16082220 16082220 + Missense_Mutation SNP A A G novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . MYCN NM_005378 exon2 c.A34G p.M12V CCGGGCATGATCT . 268.0 120.0 162.0 0.0 . 63 . . Atlas-SNP TRABD2A 129293 hgsc.bcm.edu hg19 2 85066338 85066338 + Missense_Mutation SNP C C G novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed C2orf89_ENST00000335459,extremity,malignant_melanoma,0,1 . NM_001080824 exon3 c.A779C p.Y260S CGCTTCCCTATTC . 193.0 23.0 130.0 0.0 . . . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179472788 179472788 + Missense_Mutation SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . TTN NM_001267550 exon276 c.C52726T p.P17576S CTCTTGGGATAGG . 172.0 78.0 120.0 0.0 . 18412 . . Atlas-SNP BRPF1 7862 hgsc.bcm.edu hg19 3 9776191 9776191 + Missense_Mutation SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . BRPF1 NM_001003694 exon2 c.G367A p.E123K GAGGATGAGGAAG . 116.0 72.0 88.0 0.0 . 104 . . Atlas-SNP PRRT3 285368 hgsc.bcm.edu hg19 3 9988526 9988526 + Silent SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . PRRT3 NM_207351 exon4 c.G2331T p.S777S ACCCAACGACGCA . 12.0 11.0 2.0 0.0 . 35 . . Atlas-SNP ZCWPW2 152098 hgsc.bcm.edu hg19 3 28566047 28566047 + Silent SNP A A T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . ZCWPW2 NM_001040432 exon9 c.A939T p.A313A TCCTGCAGGCAGT . 326.0 79.0 323.0 0.0 . 49 . . Atlas-SNP GOLGA4 2803 hgsc.bcm.edu hg19 3 37366808 37366808 + Missense_Mutation SNP A A G novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . GOLGA4 NM_001172713 exon15 c.A3497G p.N1166S ACTTGAATAAGTC . 225.0 123.0 207.0 0.0 . 173 . . Atlas-SNP GMPS 8833 hgsc.bcm.edu hg19 3 155643090 155643090 + Missense_Mutation SNP A A T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . GMPS NM_003875 exon12 c.A1495T p.M499L AAGCTGATGCAAA . 1011.0 681.0 643.0 1.0 . 70 . . Atlas-SNP CCDC39 339829 hgsc.bcm.edu hg19 3 180381668 180381668 + Missense_Mutation SNP A A C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . CCDC39 NM_181426 exon2 c.T197G p.L66R ATTGAGAGCTCTT . 168.0 13.0 137.0 0.0 . 242 . . Atlas-SNP KIAA1239 57495 hgsc.bcm.edu hg19 4 37447823 37447823 + Missense_Mutation SNP A A C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . KIAA1239 NM_001144990 exon7 c.A4213C p.I1405L CTGCTGATTACAC . 48.0 21.0 48.0 0.0 . 79 . . Atlas-SNP RASA1 5921 hgsc.bcm.edu hg19 5 86637134 86637134 + Nonsense_Mutation SNP A A T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . RASA1 NM_002890 exon6 c.A1045T p.K349X GAAGGAAAAATGT . 145.0 49.0 167.0 0.0 . 213 . . Atlas-SNP ARAP3 64411 hgsc.bcm.edu hg19 5 141036086 141036086 + Silent SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . ARAP3 NM_022481 exon27 c.G3774T p.L1258L CTTGAGCAGCAGC . 92.0 35.0 86.0 0.0 . 139 . . Atlas-SNP B3GAT2 135152 hgsc.bcm.edu hg19 6 71603895 71603895 + Silent SNP G G A rs371527631 alternate_allele TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . B3GAT2 NM_080742 exon2 c.C672T p.N224N TTTGCCGTTTTCC . 67.0 18.0 61.0 0.0 . 33 . . Atlas-SNP HDAC2 3066 hgsc.bcm.edu hg19 6 114264582 114264582 + Missense_Mutation SNP A A T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . HDAC2 NM_001527 exon12 c.T1311A p.D437E CTTATGATCAGCC . 194.0 71.0 198.0 0.0 . 102 . . Atlas-SNP HECW1 23072 hgsc.bcm.edu hg19 7 43484350 43484350 + Missense_Mutation SNP T T A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . HECW1 NM_015052 exon11 c.T1579A p.S527T CGGGCCTCGGTGA . 73.0 20.0 58.0 0.0 . 540 . . Atlas-SNP MYO1G 64005 hgsc.bcm.edu hg19 7 45005391 45005391 + Nonsense_Mutation SNP C C T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . MYO1G NM_033054 exon17 c.G2226A p.W742X CCGGAACCAGCGC . 23.0 14.0 16.0 0.0 . 86 . . Atlas-SNP ASNS 440 hgsc.bcm.edu hg19 7 97498423 97498423 + Missense_Mutation SNP C C G novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . ASNS NM_133436 exon3 c.G46C p.V16L ACTGAACAGAAAG . 186.0 55.0 221.0 0.0 . 97 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113662399 113662399 + Missense_Mutation SNP T T C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed CSMD3_ENST00000343508,colon,carcinoma,0,2 CSMD3 NM_198123 exon19 c.A3184G p.T1062A CACAGGTTGGAAG . 363.0 84.0 143.0 1.0 . 2325 . . Atlas-SNP TRPS1 7227 hgsc.bcm.edu hg19 8 116616801 116616801 + Silent SNP T T A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . TRPS1 NM_014112 exon4 c.A1395T p.L465L ATGTTCTAGCAGT . 238.0 63.0 106.0 0.0 . 516 . . Atlas-SNP OC90 729330 hgsc.bcm.edu hg19 8 133053841 133053841 + Missense_Mutation SNP C C A rs372434452 alternate_allele TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . OC90 NM_001080399 exon5 c.G275T p.R92L AAGTCTCGGGGGC . 270.0 85.0 151.0 0.0 . 163 . . Atlas-SNP LCN2 3934 hgsc.bcm.edu hg19 9 130912582 130912582 + Silent SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . LCN2 NM_005564 exon2 c.G204A p.P68P AGACCCGCAAAAG . 232.0 111.0 178.0 0.0 . 12 . . Atlas-SNP C9orf96 169436 hgsc.bcm.edu hg19 9 136269044 136269044 + Missense_Mutation SNP G G T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . C9orf96 NM_153710 exon16 c.G1604T p.G535V CTGCAGGCTGCAT . 49.0 14.0 34.0 0.0 . 77 . . Atlas-SNP TUBB8 347688 hgsc.bcm.edu hg19 10 94784 94784 + Silent SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . TUBB8 NM_177987 exon2 c.G126T p.L42L CAGCTGCAGGTGG . 63.0 30.0 38.0 0.0 . 62 . . Atlas-SNP USP54 159195 hgsc.bcm.edu hg19 10 75277370 75277370 + Silent SNP T T C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . USP54 NM_152586 exon18 c.A2814G p.P938P TGACTCTGGAGAT . 260.0 137.0 170.0 0.0 . 178 . . Atlas-SNP NLRP6 171389 hgsc.bcm.edu hg19 11 281055 281055 + Missense_Mutation SNP G G C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . NLRP6 NM_138329 exon4 c.G1321C p.D441H CAGGGCGACCTGC . 72.0 17.0 44.0 0.0 . 4 . . Atlas-SNP BBOX1 8424 hgsc.bcm.edu hg19 11 27137031 27137031 + Missense_Mutation SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . BBOX1 NM_003986 exon6 c.C566A p.A189E TCGATGCAAACAA . 67.0 24.0 43.0 0.0 . 46 . . Atlas-SNP EFCAB4B 84766 hgsc.bcm.edu hg19 12 3736844 3736844 + Missense_Mutation SNP A A C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . EFCAB4B NM_001144958 exon16 c.T1764G p.N588K GTCCACATTCAAC . 59.0 15.0 46.0 0.0 . 100 . . Atlas-SNP CCND2 894 hgsc.bcm.edu hg19 12 4383263 4383263 + Missense_Mutation SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . CCND2 NM_001759 exon1 c.C57A p.N19K CCGCAACCTGCTC . 75.0 18.0 42.0 0.0 . 50 . . Atlas-SNP TMTC2 160335 hgsc.bcm.edu hg19 12 83250808 83250808 + Nonsense_Mutation SNP C C T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . TMTC2 NM_152588 exon2 c.C103T p.Q35X ACTAATCAGGACC . 158.0 57.0 134.0 0.0 . 100 . . Atlas-SNP OR4Q3 441669 hgsc.bcm.edu hg19 14 20215599 20215599 + Missense_Mutation SNP C C G novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . OR4Q3 NM_172194 exon1 c.C13G p.Q5E AAAGAACAAGATT . 822.0 172.0 869.0 0.0 . 117 . . Atlas-SNP OR4N5 390437 hgsc.bcm.edu hg19 14 20612767 20612767 + Missense_Mutation SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . OR4N5 NM_001004724 exon1 c.C873A p.N291K TCGCAACCAGGAG . 130.0 65.0 106.0 0.0 . 72 . . Atlas-SNP DDHD1 80821 hgsc.bcm.edu hg19 14 53540463 53540463 + Silent SNP A A G novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . DDHD1 NM_001160147 exon6 c.T1413C p.D471D ACCTCCATCAAGA . 191.0 77.0 214.0 0.0 . 202 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64520042 64520042 + Silent SNP C C T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . SYNE2 NM_182914 exon48 c.C9411T p.L3137L AGTTCTCCAAAAC . 169.0 68.0 213.0 0.0 . 577 . . Atlas-SNP POMT2 29954 hgsc.bcm.edu hg19 14 77746417 77746417 + Missense_Mutation SNP G G A rs148466370 bycluster TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed POMT2,colon,carcinoma,0,1 POMT2 NM_013382 exon17 c.C1732T p.R578C AGAAGCGTAGGCC . 96.0 37.0 74.0 0.0 . 47 . G|1.000;A|0.000 Atlas-SNP CHRNB4 1143 hgsc.bcm.edu hg19 15 78927919 78927919 + Silent SNP G G C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed CHRNB4,NS,carcinoma,0,2 CHRNB4 NM_000750 exon2 c.C66G p.R22R GGCCACGCGGCAG . 123.0 108.0 49.0 0.0 . 59 . . Atlas-SNP NTRK3 4916 hgsc.bcm.edu hg19 15 88472662 88472662 + Silent SNP G G T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . NTRK3 NM_001012338 exon17 c.C1893A p.A631A CCCATGGGCCCTG . 74.0 39.0 51.0 0.0 . 587 . . Atlas-SNP IL21R 50615 hgsc.bcm.edu hg19 16 27448870 27448870 + Missense_Mutation SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . IL21R NM_181079 exon5 c.C280A p.H94N TCGGCCCACAATG . 38.0 27.0 37.0 0.0 . 95 . . Atlas-SNP ZDHHC1 29800 hgsc.bcm.edu hg19 16 67432171 67432171 + Missense_Mutation SNP C C G novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . ZDHHC1 NM_013304 exon8 c.G871C p.A291P CCTTGGCCTCCTG . 92.0 74.0 74.0 0.0 . 28 . . Atlas-SNP OR1A2 26189 hgsc.bcm.edu hg19 17 3101458 3101458 + Missense_Mutation SNP T T C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed OR1A2,NS,neuroblastoma,0,1 OR1A2 NM_012352 exon1 c.T646C p.S216P ATTGTCTCCTATG . 354.0 32.0 620.0 0.0 . 52 . . Atlas-SNP ELAC2 60528 hgsc.bcm.edu hg19 17 12896302 12896302 + Missense_Mutation SNP C C G novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . ELAC2 NM_018127 exon24 c.G2314C p.A772P CGCCAGCAAACAG . 25.0 19.0 16.0 0.0 . 48 . . Atlas-SNP GAS2L2 246176 hgsc.bcm.edu hg19 17 34072948 34072948 + Missense_Mutation SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . GAS2L2 NM_139285 exon6 c.C1568T p.T523I CCACTTGTAGCAC . 27.0 9.0 14.0 0.0 . 94 . . Atlas-SNP STRADA 92335 hgsc.bcm.edu hg19 17 61784645 61784645 + Missense_Mutation SNP T T C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . STRADA NM_001003787 exon9 c.A715G p.K239E GAACCTTGACACT . 73.0 48.0 29.0 0.0 . 27 . . Atlas-SNP LMAN1 3998 hgsc.bcm.edu hg19 18 57026472 57026472 + Missense_Mutation SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . LMAN1 NM_005570 exon1 c.C5T p.A2V GATCCCGCCATCT . 39.0 27.0 52.0 0.0 . 57 . . Atlas-SNP AP3D1 8943 hgsc.bcm.edu hg19 19 2120931 2120931 + Missense_Mutation SNP T T G novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed AP3D1,colon,carcinoma,0,1 AP3D1 NM_001261826 exon14 c.A1411C p.S471R TGCTGCTGGCCAG . 66.0 24.0 38.0 0.0 . 81 . . Atlas-SNP YIPF2 78992 hgsc.bcm.edu hg19 19 11034659 11034659 + Silent SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . YIPF2 NM_024029 exon7 c.C501T p.I167I GATGCTGATGCCT . 22.0 10.0 27.0 0.0 . 13 . . Atlas-SNP RFX1 5989 hgsc.bcm.edu hg19 19 14092957 14092957 + Silent SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . RFX1 NM_002918 exon5 c.C597T p.T199T CTGCTGGGTACCA . 103.0 50.0 87.0 0.0 . 63 . . Atlas-SNP NPHS1 4868 hgsc.bcm.edu hg19 19 36339602 36339602 + Silent SNP C C T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . NPHS1 NM_004646 exon9 c.G1107A p.R369R CAGAACCCGCGGG . 197.0 50.0 63.0 0.0 . 165 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38378503 38378503 + Missense_Mutation SNP C C G novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . WDR87 NM_031951 exon6 c.G5691C p.Q1897H CTTTTCCTGTGTC . 451.0 124.0 302.0 0.0 . 191 . . Atlas-SNP ZNF234 10780 hgsc.bcm.edu hg19 19 44661606 44661606 + Silent SNP C C G rs182811010 bycluster;by1000genomes;alternate_allele TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . ZNF234 NM_006630 exon6 c.C1437G p.T479T CCATACCGGTGAG . 148.0 42.0 126.0 0.0 . 132 . C|0.999;T|0.001 Atlas-SNP CCDC8 83987 hgsc.bcm.edu hg19 19 46914889 46914889 + Silent SNP C C T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . CCDC8 NM_032040 exon1 c.G1179A p.A393A GGCCTCCGCCCTC . 325.0 141.0 182.0 0.0 . 56 . . Atlas-SNP JPH2 57158 hgsc.bcm.edu hg19 20 42815335 42815335 + Missense_Mutation SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . JPH2 NM_175913 exon1 c.G11T p.G4V AAGCGGCCCCCAC . 15.0 11.0 9.0 0.0 . 86 . . Atlas-SNP CDH26 60437 hgsc.bcm.edu hg19 20 58560154 58560154 + Missense_Mutation SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . CDH26 NM_177980 exon7 c.C807A p.N269K AGGCAACAACCAC . 80.0 20.0 41.0 0.0 . 229 . . Atlas-SNP CHAF1B 8208 hgsc.bcm.edu hg19 21 37785409 37785409 + Missense_Mutation SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . CHAF1B NM_005441 exon12 c.C1289A p.P430H GCAGCCCCGGCAC . 54.0 20.0 35.0 0.0 . 47 . . Atlas-SNP IL17REL 400935 hgsc.bcm.edu hg19 22 50439551 50439551 + Missense_Mutation SNP G G C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . IL17REL NM_001001694 exon4 c.C69G p.C23W CATCGCGCAGCCG . 78.0 46.0 43.0 0.0 . 21 . . Atlas-SNP GPR64 10149 hgsc.bcm.edu hg19 X 19017392 19017392 + Missense_Mutation SNP C C A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . GPR64 NM_001184834 exon26 c.G2336T p.W779L TTGATCCAGCAGC . 209.0 20.0 152.0 0.0 . 102 . . Atlas-SNP RLIM 51132 hgsc.bcm.edu hg19 X 73811891 73811891 + Missense_Mutation SNP A A T novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . RLIM NM_183353 exon5 c.T1259A p.M420K CTGTACATAAAAT . 185.0 88.0 160.0 0.0 . 90 . . Atlas-SNP RAB40A 142684 hgsc.bcm.edu hg19 X 102755566 102755566 + Missense_Mutation SNP T T A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . RAB40A NM_080879 exon3 c.A119T p.E40V GGGGACTCAGCTG . 281.0 104.0 236.0 0.0 . 30 . . Atlas-SNP FRMD7 90167 hgsc.bcm.edu hg19 X 131212315 131212315 + Missense_Mutation SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . FRMD7 NM_194277 exon12 c.C1730T p.A577V ACAAATGCATCTT . 245.0 113.0 202.0 0.0 . 69 . . Atlas-SNP ND3 0 hgsc.bcm.edu hg19 MT 10197 10197 + Missense_Mutation SNP G G A novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . . ENST00000361227 exon1 c.G139A p.A47T TCCCCCGCCCGCG . 169.0 49.0 72.0 0.0 . . . . Atlas-SNP FKBP10 60681 hgsc.bcm.edu hg19 17 39969300 39969301 + Frame_Shift_Ins INS - - C novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed .,2 FKBP10 NM_021939 exon1 c.14_15insC p.G5fs . . 104.0 10.0 28.0 0.0 . 57 . . Atlas-INDEL IL6ST 3572 hgsc.bcm.edu hg19 5 55260049 55260057 + In_Frame_Del DEL CAATGTTGA CAATGTTGA - novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 CAATGTTGA CAATGTTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . IL6ST NM_002184 exon6 c.576_584del p.192_195del . . 271.0 73.0 296.0 0.0 . 75 . . Atlas-Indel,Pindel ARID1A 8289 hgsc.bcm.edu hg19 1 27107084 27107085 + Frame_Shift_Ins INS - - GC novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . ARID1A NM_006015 exon20 c.6695_6696insGC p.R2232fs . . 22.0 13.0 18.0 0.0 . 842 . . Atlas-INDEL FAM45B 55855 hgsc.bcm.edu hg19 X 129629661 129629666 + RNA DEL CTGATG CTGATG - novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 CTGATG CTGATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . FAM45B . . . . . . 311.0 53.0 326.0 0.0 . 26 . . Atlas-Indel,Pindel PCDH15 65217 hgsc.bcm.edu hg19 10 56106175 56106177 + In_Frame_Del DEL CAT CAT - novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 CAT CAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . PCDH15 NM_001142763 exon7 c.558_560del p.186_187del . . 158.0 62.0 134.0 0.0 . 1715 . . Atlas-Indel,Pindel LCE1E 353135 hgsc.bcm.edu hg19 1 152759968 152759968 + Frame_Shift_Del DEL G G - novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . LCE1E NM_178353 exon2 c.192delT p.S64fs . . 146.0 39.0 111.0 0.0 . 26 . . Atlas-Indel,Pindel KALRN 8997 hgsc.bcm.edu hg19 3 124044866 124044867 + Frame_Shift_Ins INS - - TC novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed .,2 KALRN NM_003947 exon7 c.1126_1127insTC p.S376fs . . 241.0 25.0 107.0 0.0 . 556 . . Atlas-INDEL MTRF1L 54516 hgsc.bcm.edu hg19 6 153316373 153316374 + Frame_Shift_Ins INS - - TT novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . MTRF1L NM_001114184 exon3 c.421_422insAA p.E141fs . . 339.0 32.0 360.0 0.0 . 21 . . Atlas-INDEL CCDC8 83987 hgsc.bcm.edu hg19 19 46914871 46914942 + In_Frame_Del DEL CTGGTCAGCTGGGGCCTCCGCCCTCTGATTATCTGCAGCCTCTTCCCTGTGGTTATCTGTGCCCTGTGACCT CTGGTCAGCTGGGGCCTCCGCCCTCTGATTATCTGCAGCCTCTTCCCTGTGGTTATCTGTGCCCTGTGACCT - novel TCGA-CC-A123-01A-11D-A12Z-10 TCGA-CC-A123-10A-01D-A12Z-10 CTGGTCAGCTGGGGCCTCCGCCCTCTGATTATCTGCAGCCTCTTCCCTGTGGTTATCTGTGCCCTGTGACCT CTGGTCAGCTGGGGCCTCCGCCCTCTGATTATCTGCAGCCTCTTCCCTGTGGTTATCTGTGCCCTGTGACCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b 69282336-dc29-494e-a63e-b8aef9c80bed . CCDC8 NM_032040 exon1 c.1127_1198del p.376_400del . . 302.0 16.0 190.0 0.0 . 56 . . Pindel