Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm EIF4G3 8672 hgsc.bcm.edu hg19 1 21231426 21231426 + Missense_Mutation SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . EIF4G3 NM_001198802 exon13 c.C1552T p.P518S CTTTTGGTTTCTT . 393.0 144.0 372.0 0.0 . 300 . . Atlas-SNP CYP4A22 284541 hgsc.bcm.edu hg19 1 47610101 47610101 + Missense_Mutation SNP A A G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . CYP4A22 NM_001010969 exon7 c.A863G p.H288R AGAGGCACTTGGA . 435.0 176.0 325.0 1.0 . 60 . . Atlas-SNP PTGER3 5733 hgsc.bcm.edu hg19 1 71512812 71512812 + Missense_Mutation SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . PTGER3 NM_001126044 exon1 c.C449T p.A150V GCCATGGCGCTGG . 51.0 24.0 24.0 0.0 . 246 . . Atlas-SNP STXBP3 6814 hgsc.bcm.edu hg19 1 109340799 109340799 + Silent SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . STXBP3 NM_007269 exon16 c.G1389T p.R463R GGATCGGTCTGCA . 598.0 245.0 536.0 1.0 . 44 . . Atlas-SNP SYT6 148281 hgsc.bcm.edu hg19 1 114646254 114646254 + Missense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . SYT6 NM_205848 exon4 c.C906A p.N302K CTTGAGGTTCCGA . 83.0 39.0 76.0 0.0 . 66 . . Atlas-SNP NUP210L 91181 hgsc.bcm.edu hg19 1 154033436 154033436 + Silent SNP A A G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . NUP210L NM_001159484 exon19 c.T2730C p.Y910Y GTGGTTATAGATG . 324.0 118.0 262.0 0.0 . 181 . . Atlas-SNP PMVK 10654 hgsc.bcm.edu hg19 1 154904884 154904884 + Missense_Mutation SNP C C G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . PMVK NM_006556 exon2 c.G103C p.A35P CATCAGCTCCAAG . 259.0 14.0 179.0 0.0 . 17 . . Atlas-SNP MNDA 4332 hgsc.bcm.edu hg19 1 158817665 158817665 + Missense_Mutation SNP C C A rs139902913 alternate_allele TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . MNDA NM_002432 exon6 c.C1135A p.R379S GTTGACCGCAAGC . 145.0 58.0 127.0 0.0 . 147 . C|1.000;T|0.000 Atlas-SNP TBX19 9095 hgsc.bcm.edu hg19 1 168262484 168262484 + Missense_Mutation SNP T T C novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . TBX19 NM_005149 exon3 c.T571C p.F191L ACCCAGTTCATAG . 126.0 52.0 67.0 0.0 . 68 . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179603595 179603595 + Missense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . TDRD5 NM_173533 exon8 c.A1130T p.Q377L TAGTTCAGTCAGA . 183.0 73.0 183.0 0.0 . 149 . . Atlas-SNP KIF26B 55083 hgsc.bcm.edu hg19 1 245847619 245847619 + Silent SNP G G A rs201075952 TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . KIF26B NM_018012 exon11 c.G2343A p.A781A GGCCGCGGTCGGG . 124.0 42.0 68.0 0.0 . 343 . G|0.999;A|0.001 Atlas-SNP SCCPDH 51097 hgsc.bcm.edu hg19 1 246923373 246923373 + Missense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . SCCPDH NM_016002 exon8 c.A928T p.I310L CTTCTCATAAAAG . 934.0 323.0 854.0 1.0 . 37 . . Atlas-SNP TET3 200424 hgsc.bcm.edu hg19 2 74327943 74327943 + Missense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . TET3 NM_144993 exon9 c.A3623T p.Q1208L CCAGCCAGGCTGT . 69.0 27.0 46.0 0.0 . 101 . . Atlas-SNP NR4A2 4929 hgsc.bcm.edu hg19 2 157186659 157186659 + Missense_Mutation SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . NR4A2 NM_006186 exon3 c.G40A p.G14R TGGCTCCTTGAGG . 147.0 38.0 122.0 0.0 . 82 . . Atlas-SNP HOXD4 3233 hgsc.bcm.edu hg19 2 177017653 177017653 + Missense_Mutation SNP G G C novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . HOXD4 NM_014621 exon2 c.G751C p.D251H CACACGGACCTGA . 138.0 52.0 86.0 0.0 . 32 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179419703 179419703 + Missense_Mutation SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . TTN NM_001267550 exon331 c.C88483T p.L29495F ATGCGAGGTCCGT . 198.0 79.0 150.0 0.0 . 18412 . . Atlas-SNP NCL 4691 hgsc.bcm.edu hg19 2 232325414 232325414 + Missense_Mutation SNP T T A rs199689485 bycluster TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . NCL NM_005381 exon4 c.A777T p.E259D ATCATCTTCATCA . 432.0 44.0 350.0 0.0 . 80 . . Atlas-SNP TTC21A 199223 hgsc.bcm.edu hg19 3 39171742 39171742 + Nonsense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . TTC21A NM_145755 exon17 c.G2233T p.E745X CAGCCCGAGAAGG . 63.0 42.0 77.0 0.0 . 96 . . Atlas-SNP ZIC4 84107 hgsc.bcm.edu hg19 3 147120535 147120535 + Missense_Mutation SNP C C G rs148365070 bycluster;by1000genomes;alternate_allele TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d ZIC4_ENST00000525172,NS,carcinoma,0,4 ZIC4 NM_001168378 exon2 c.G200C p.R67P GTGTTTCGGTAAA . 191.0 65.0 181.0 0.0 . 174 . C|0.999;T|0.001 Atlas-SNP ABCC5 10057 hgsc.bcm.edu hg19 3 183667834 183667834 + Silent SNP T T A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ABCC5 NM_005688 exon21 c.A3024T p.A1008A GACTCCTGCGATC . 143.0 45.0 105.0 0.0 . 142 . . Atlas-SNP CEP135 9662 hgsc.bcm.edu hg19 4 56846403 56846403 + Missense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . CEP135 NM_025009 exon12 c.A1568T p.Q523L ATATACAGTCCAA . 432.0 168.0 502.0 0.0 . 115 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123274094 123274094 + Missense_Mutation SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . KIAA1109 NM_015312 exon79 c.G13885A p.V4629I CCTGGAGTATTGA . 152.0 52.0 121.0 0.0 . 424 . . Atlas-SNP GRIA2 2891 hgsc.bcm.edu hg19 4 158262498 158262498 + Missense_Mutation SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . GRIA2 NM_000826 exon12 c.G1927A p.A643T TTAGCTGCCTTCC . 608.0 231.0 639.0 1.0 . 358 . . Atlas-SNP GRIA2 2891 hgsc.bcm.edu hg19 4 158262499 158262499 + Missense_Mutation SNP C C A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . GRIA2 NM_000826 exon12 c.C1928A p.A643D TAGCTGCCTTCCT . 600.0 227.0 634.0 2.0 . 358 . . Atlas-SNP SLC1A3 6507 hgsc.bcm.edu hg19 5 36684073 36684073 + Missense_Mutation SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . SLC1A3 NM_004172 exon9 c.C1397T p.T466M ACATCACGCTCAT . 383.0 87.0 173.0 0.0 . 88 . . Atlas-SNP EGFLAM 133584 hgsc.bcm.edu hg19 5 38427282 38427282 + Missense_Mutation SNP T T A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . EGFLAM NM_001205301 exon14 c.T1982A p.F661Y AAGACTTCCTGTC . 165.0 43.0 104.0 0.0 . 302 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89910835 89910835 + Nonsense_Mutation SNP C C A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . GPR98 NM_032119 exon2 c.C206A p.S69X TTGTATCGGTAAG . 109.0 63.0 227.0 0.0 . 605 . . Atlas-SNP RNF182 221687 hgsc.bcm.edu hg19 6 13977395 13977395 + Silent SNP T T C novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . RNF182 NM_001165032 exon4 c.T45C p.S15S GGCCTCTGATGAG . 193.0 85.0 113.0 0.0 . 51 . . Atlas-SNP FILIP1 27145 hgsc.bcm.edu hg19 6 76024218 76024218 + Nonsense_Mutation SNP T T A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . FILIP1 NM_015687 exon5 c.A1330T p.K444X TACTCTTGCTAAA . 662.0 328.0 457.0 1.0 . 173 . . Atlas-SNP CITED2 10370 hgsc.bcm.edu hg19 6 139694674 139694674 + Silent SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . CITED2 NM_001168389 exon2 c.G423A p.P141P CAAATCCGGCATG . 288.0 141.0 154.0 0.0 . 16 . . Atlas-SNP CITED2 10370 hgsc.bcm.edu hg19 6 139694675 139694675 + Missense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . CITED2 NM_001168389 exon2 c.C422A p.P141Q AAATCCGGCATGT . 291.0 145.0 154.0 0.0 . 16 . . Atlas-SNP SASH1 23328 hgsc.bcm.edu hg19 6 148867236 148867236 + Missense_Mutation SNP T T A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . SASH1 NM_015278 exon19 c.T3434A p.M1145K CCAACATGGACCA . 104.0 51.0 57.0 0.0 . 123 . . Atlas-SNP NOX3 50508 hgsc.bcm.edu hg19 6 155718096 155718096 + Missense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . NOX3 NM_015718 exon13 c.C1581A p.S527R ACTGCTGCTGCAG . 159.0 38.0 77.0 0.0 . 93 . . Atlas-SNP IGF2R 3482 hgsc.bcm.edu hg19 6 160454027 160454027 + Nonsense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . IGF2R NM_000876 exon9 c.G1099T p.G367X GTCTGTGGAGAAA . 197.0 59.0 143.0 0.0 . 251 . . Atlas-SNP PDE10A 10846 hgsc.bcm.edu hg19 6 165846593 165846593 + Missense_Mutation SNP C C G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . PDE10A NM_001130690 exon7 c.G562C p.G188R CCAGTCCAGTACC . 323.0 84.0 231.0 0.0 . 154 . . Atlas-SNP AOAH 313 hgsc.bcm.edu hg19 7 36633945 36633945 + Missense_Mutation SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . AOAH NM_001637 exon12 c.G938A p.G313E ACTTACCCAACAG . 213.0 12.0 146.0 0.0 . 79 . . Atlas-SNP TPST1 8460 hgsc.bcm.edu hg19 7 65751568 65751568 + Missense_Mutation SNP A A G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . TPST1 NM_003596 exon3 c.A916G p.I306V GGGAAGATACCGC . 147.0 68.0 139.0 0.0 . 25 . . Atlas-SNP CALN1 83698 hgsc.bcm.edu hg19 7 71571275 71571275 + Silent SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . CALN1 NM_031468 exon4 c.C249A p.I83I CTCTCGGATTTCT . 56.0 20.0 45.0 0.0 . 92 . . Atlas-SNP YWHAG 7532 hgsc.bcm.edu hg19 7 75959524 75959524 + Silent SNP C C G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . YWHAG NM_012479 exon2 c.G114C p.S38S CTCATTCGACAGT . 56.0 27.0 36.0 0.0 . 24 . . Atlas-SNP MCM7 4176 hgsc.bcm.edu hg19 7 99693701 99693701 + Missense_Mutation SNP C C A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . MCM7 NM_005916 exon11 c.G1291T p.G431C CCCCACCCTCTAA . 94.0 35.0 69.0 0.0 . 136 . . Atlas-SNP FGF20 26281 hgsc.bcm.edu hg19 8 16853235 16853235 + Missense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . FGF20 NM_019851 exon2 c.C319A p.L107M TGACCAGTCCCAC . 103.0 56.0 152.0 0.0 . 16 . . Atlas-SNP PPP2R4 5524 hgsc.bcm.edu hg19 9 131909700 131909700 + Missense_Mutation SNP A A G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . PPP2R4 NM_178001 exon11 c.A1034G p.K345R ACTTCAAGTTCGG . 87.0 44.0 43.0 0.0 . 32 . . Atlas-SNP MASTL 84930 hgsc.bcm.edu hg19 10 27459791 27459791 + Missense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . MASTL NM_032844 exon8 c.A1903T p.M635L CAAAAAATGTTAG . 139.0 49.0 110.0 0.0 . 81 . . Atlas-SNP ERCC6 2074 hgsc.bcm.edu hg19 10 50732464 50732464 + Nonsense_Mutation SNP T T A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ERCC6 NM_000124 exon5 c.A1012T p.K338X AAGCCCTCTTCTG . 985.0 364.0 736.0 2.0 . 162 . . Atlas-SNP PDE3B 5140 hgsc.bcm.edu hg19 11 14665851 14665851 + Missense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . PDE3B NM_000922 exon1 c.G230T p.R77L TCTGCCGGGCGCG . 17.0 11.0 0.0 0.0 . 98 . . Atlas-SNP OR10V1 390201 hgsc.bcm.edu hg19 11 59481145 59481145 + Silent SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . OR10V1 NM_001005324 exon1 c.C174A p.P58P GTACATGGGGGTG . 231.0 10.0 167.0 0.0 . 40 . . Atlas-SNP B4GALNT3 283358 hgsc.bcm.edu hg19 12 668557 668557 + Nonsense_Mutation SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . B4GALNT3 NM_173593 exon19 c.G2858A p.W953X ACCGCTGGGGCGG . 93.0 34.0 69.0 0.0 . 64 . . Atlas-SNP KRT78 196374 hgsc.bcm.edu hg19 12 53237937 53237937 + Silent SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . KRT78 NM_173352 exon6 c.C987T p.I329I CTGAGAGATCTGG . 402.0 152.0 289.0 0.0 . 41 . . Atlas-SNP OR6C75 390323 hgsc.bcm.edu hg19 12 55759521 55759521 + Missense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . OR6C75 NM_001005497 exon1 c.G627T p.L209F CACCTTGACATTA . 466.0 174.0 406.0 1.0 . 67 . . Atlas-SNP KL 9365 hgsc.bcm.edu hg19 13 33638123 33638123 + Missense_Mutation SNP A A G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . KL NM_004795 exon5 c.A2839G p.I947V AGGAAAATTATTG . 225.0 51.0 322.0 0.0 . 106 . . Atlas-SNP MAB21L1 4081 hgsc.bcm.edu hg19 13 36050192 36050192 + Silent SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . MAB21L1 NM_005584 exon1 c.C84A p.A28A AGTTTTGGCAATG . 56.0 35.0 82.0 0.0 . 52 . . Atlas-SNP MAB21L1 4081 hgsc.bcm.edu hg19 13 36050193 36050193 + Missense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . MAB21L1 NM_005584 exon1 c.C83A p.A28D GTTTTGGCAATGG . 56.0 34.0 82.0 0.0 . 52 . . Atlas-SNP NALCN 259232 hgsc.bcm.edu hg19 13 101717813 101717813 + Missense_Mutation SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . NALCN NM_052867 exon40 c.G4547A p.C1516Y TCGTAGCACATGT . 130.0 42.0 64.0 0.0 . 431 . . Atlas-SNP KLHL33 123103 hgsc.bcm.edu hg19 14 20897958 20897958 + Missense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . KLHL33 NM_001109997 exon2 c.C877A p.L293I ACCTGAGAGTTGA . 76.0 24.0 66.0 0.0 . 37 . . Atlas-SNP CHD8 57680 hgsc.bcm.edu hg19 14 21878045 21878045 + Missense_Mutation SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . CHD8 NM_001170629 exon10 c.C2329T p.R777W GAATCCGTTTAAA . 311.0 30.0 331.0 0.0 . 339 . . Atlas-SNP ITPK1 3705 hgsc.bcm.edu hg19 14 93483123 93483123 + Silent SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ITPK1 NM_001142593 exon4 c.G144A p.E48E CTGCTCCTCGATC . 71.0 34.0 47.0 0.0 . 53 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94088075 94088075 + Missense_Mutation SNP A A G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . UNC79 NM_020818 exon30 c.A3965G p.Q1322R TCAAACAAAAATC . 182.0 63.0 149.0 0.0 . 366 . . Atlas-SNP OR4F15 390649 hgsc.bcm.edu hg19 15 102359072 102359072 + Missense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . OR4F15 NM_001001674 exon1 c.A683T p.H228L GGAAACATTCTTC . 989.0 257.0 611.0 0.0 . 42 . . Atlas-SNP PDXDC1 23042 hgsc.bcm.edu hg19 16 15126797 15126797 + Nonsense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . PDXDC1 NM_015027 exon18 c.A1651T p.K551X CTGAAGAAGTTAA . 138.0 52.0 124.0 0.0 . 59 . . Atlas-SNP LAT 27040 hgsc.bcm.edu hg19 16 29001267 29001267 + Silent SNP C C A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . LAT NM_001014989 exon12 c.C744A p.S248S GAGTTCCCAGGAG . 161.0 53.0 95.0 0.0 . 22 . . Atlas-SNP MYLK3 91807 hgsc.bcm.edu hg19 16 46766546 46766546 + Missense_Mutation SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . MYLK3 NM_182493 exon4 c.G1036A p.G346R TCTCCCCAGGAGT . 18.0 14.0 8.0 0.0 . 82 . . Atlas-SNP DVL2 1856 hgsc.bcm.edu hg19 17 7129551 7129551 + Missense_Mutation SNP T T G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . DVL2 NM_004422 exon15 c.A1844C p.K615T CCGGACTTGGACT . 25.0 14.0 14.0 0.0 . 49 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577107 7577107 + Nonsense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d TP53_ENST00000455263,NS,carcinoma,-1,2 TP53 NM_000546 exon8 c.T831A p.C277X CCCAGGACAGGCA . 65.0 47.0 87.0 0.0 . 33396 . . Atlas-SNP CRLF3 51379 hgsc.bcm.edu hg19 17 29119458 29119458 + Missense_Mutation SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . CRLF3 NM_015986 exon6 c.G959A p.R320K ACTTGCCTGAATG . 131.0 46.0 116.0 0.0 . 36 . . Atlas-SNP KRT28 162605 hgsc.bcm.edu hg19 17 38955214 38955214 + Missense_Mutation SNP A A G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . KRT28 NM_181535 exon2 c.T488C p.L163P ATCTGCAGAATGA . 783.0 217.0 595.0 0.0 . 65 . . Atlas-SNP MPP2 4355 hgsc.bcm.edu hg19 17 41958848 41958848 + Missense_Mutation SNP T T G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . MPP2 NM_005374 exon7 c.A791C p.Q264P TCATCCTGGTTTA . 105.0 30.0 55.0 0.0 . 67 . . Atlas-SNP HOXB9 3219 hgsc.bcm.edu hg19 17 46703431 46703431 + Silent SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . HOXB9 NM_024017 exon1 c.C201T p.S67S GTGCGGGCTCAGC . 15.0 10.0 2.0 0.0 . 19 . . Atlas-SNP CLTC 1213 hgsc.bcm.edu hg19 17 57759022 57759022 + Silent SNP T T C novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . CLTC NM_004859 exon21 c.T3264C p.H1088H TGAGCATATTGGA . 179.0 93.0 147.0 0.0 . 124 . . Atlas-SNP KIF19 124602 hgsc.bcm.edu hg19 17 72343926 72343926 + Missense_Mutation SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . KIF19 NM_153209 exon9 c.G935A p.G312E CTCTGGGAGGAAA . 50.0 13.0 26.0 0.0 . 102 . . Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80039104 80039104 + Silent SNP G G A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . FASN NM_004104 exon38 c.C6531T p.R2177R CACCTCGCGCACG . 113.0 68.0 43.0 0.0 . 154 . . Atlas-SNP MPPE1 65258 hgsc.bcm.edu hg19 18 11889442 11889442 + Silent SNP T T A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . MPPE1 NM_001242904 exon4 c.A438T p.P146P ATGACTTGGGTGT . 203.0 50.0 135.0 0.0 . 21 . . Atlas-SNP SYT4 6860 hgsc.bcm.edu hg19 18 40854035 40854035 + Missense_Mutation SNP T T A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . SYT4 NM_020783 exon2 c.A359T p.N120I GTTGCATTCTCCA . 329.0 105.0 207.0 0.0 . 162 . . Atlas-SNP ABCA7 10347 hgsc.bcm.edu hg19 19 1051263 1051263 + Nonsense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ABCA7 NM_019112 exon20 c.A2794T p.K932X GTCTCCAAGCAGA . 85.0 27.0 53.0 0.0 . 174 . . Atlas-SNP KHSRP 8570 hgsc.bcm.edu hg19 19 6416830 6416830 + Missense_Mutation SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . KHSRP NM_003685 exon13 c.G1246A p.G416S CTTGGCCTCTTCC . 34.0 14.0 31.0 0.0 . 51 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9045799 9045799 + Silent SNP G G C rs375775766 alternate_allele TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . MUC16 NM_024690 exon5 c.C35832G p.T11944T TATCAAGGTCATA . 455.0 148.0 313.0 0.0 . 4315 . . Atlas-SNP ABHD8 79575 hgsc.bcm.edu hg19 19 17412326 17412326 + Missense_Mutation SNP T T A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ABHD8 NM_024527 exon2 c.A100T p.T34S CAAAGGTGTAGCC . 49.0 23.0 26.0 0.0 . 26 . . Atlas-SNP ZNF681 148213 hgsc.bcm.edu hg19 19 23927768 23927768 + Missense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ZNF681 NM_138286 exon4 c.T584A p.V195E AAATTTACTCTAG . 202.0 77.0 280.0 0.0 . 76 . . Atlas-SNP ZNF230 7773 hgsc.bcm.edu hg19 19 44514563 44514563 + Silent SNP C C G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ZNF230 NM_006300 exon5 c.C372G p.S124S CCCCTCCCAGGTT . 134.0 95.0 193.0 0.0 . 44 . . Atlas-SNP PPP1R12C 54776 hgsc.bcm.edu hg19 19 55606963 55606963 + Silent SNP T T C novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . PPP1R12C NM_017607 exon10 c.A1236G p.E412E GGCCTCTTCAAGC . 54.0 18.0 25.0 0.0 . 46 . . Atlas-SNP PTPRH 5794 hgsc.bcm.edu hg19 19 55716907 55716907 + Missense_Mutation SNP C C A rs144055741 bycluster;alternate_allele TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . PTPRH NM_002842 exon4 c.G406T p.A136S TCAGGGCGATGGA . 396.0 156.0 255.0 0.0 . 139 . C|1.000;T|0.000 Atlas-SNP SIGLEC1 6614 hgsc.bcm.edu hg19 20 3669214 3669214 + Missense_Mutation SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . SIGLEC1 NM_023068 exon21 c.T5123A p.L1708Q CAGCCCAGGGGTG . 107.0 44.0 81.0 0.0 . 210 . . Atlas-SNP ELMO2 63916 hgsc.bcm.edu hg19 20 45004003 45004003 + Missense_Mutation SNP T T C novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ELMO2 NM_182764 exon12 c.A937G p.R313G TGTCCCTTTGAGC . 206.0 76.0 152.0 0.0 . 51 . . Atlas-SNP NPBWR2 2832 hgsc.bcm.edu hg19 20 62737266 62737266 + Missense_Mutation SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . NPBWR2 NM_005286 exon1 c.G919A p.A307T AGTTGGCGTAGCT . 73.0 28.0 71.0 0.0 . 36 . . Atlas-SNP DNAJC28 54943 hgsc.bcm.edu hg19 21 34860757 34860757 + Missense_Mutation SNP T T A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . DNAJC28 NM_001040192 exon2 c.A944T p.N315I ATTAAATTAAAAT . 535.0 37.0 402.0 0.0 . 47 . . Atlas-SNP ST13 6767 hgsc.bcm.edu hg19 22 41223190 41223190 + Missense_Mutation SNP C C A rs710193 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ST13 NM_003932 exon11 c.G891T p.M297I TCCAGGCATTCCT . 49.0 20.0 39.0 0.0 . 16 . C|0.940;T|0.060 Atlas-SNP ZC3H7B 23264 hgsc.bcm.edu hg19 22 41739420 41739420 + Silent SNP C C T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ZC3H7B NM_017590 exon13 c.C1299T p.G433G CATAGGCCCCCGG . 108.0 36.0 50.0 0.0 . 82 . . Atlas-SNP ARAF 369 hgsc.bcm.edu hg19 X 47428285 47428285 + Missense_Mutation SNP G G T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ARAF NM_001256196 exon11 c.G1254T p.Q418H TGCCCAGGGCATG . 106.0 84.0 62.0 0.0 . 67 . . Atlas-SNP OPHN1 4983 hgsc.bcm.edu hg19 X 67283856 67283856 + Silent SNP T T A novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . OPHN1 NM_002547 exon21 c.A1998T p.P666P CACCTCTGGGCAG . 216.0 168.0 114.0 0.0 . 75 . . Atlas-SNP RBMXL3 139804 hgsc.bcm.edu hg19 X 114425456 114425456 + Silent SNP A A T novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . RBMXL3 NM_001145346 exon1 c.A1452T p.G484G CAGTGGAGGCTGC . 62.0 13.0 33.0 0.0 . 83 . . Atlas-SNP SYCP2 10388 hgsc.bcm.edu hg19 20 58444857 58444857 + Frame_Shift_Del DEL C C - novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . SYCP2 NM_014258 exon35 c.3738delA p.R1246fs . . 195.0 70.0 279.0 0.0 . 204 . . Atlas-Indel,Pindel ZNF141 7700 hgsc.bcm.edu hg19 4 367384 367397 + Frame_Shift_Del DEL AAAAATTCATACTG AAAAATTCATACTG - novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 AAAAATTCATACTG AAAAATTCATACTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ZNF141 NM_003441 exon4 c.1157_1170del p.386_390del . . 125.0 17.0 111.0 0.0 . 48 . . Atlas-Indel,Pindel MYO5A 4644 hgsc.bcm.edu hg19 15 52638630 52638630 + Frame_Shift_Del DEL A A - novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . MYO5A NM_001142495 exon30 c.3888delG p.L1296fs . . 269.0 107.0 278.0 0.0 . 145 . . Atlas-Indel,Pindel CEP85 64793 hgsc.bcm.edu hg19 1 26570728 26570729 + Frame_Shift_Ins INS - - G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . CEP85 NM_022778 exon3 c.127_128insG p.R43fs . . 282.0 20.0 196.0 0.0 . 61 . . Atlas-INDEL ITGA3 3675 hgsc.bcm.edu hg19 17 48165169 48165170 + Frame_Shift_Ins INS - - G novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . ITGA3 NM_005501 exon24 c.2981_2982insG p.L994fs . . 165.0 12.0 69.0 0.0 . 128 . . Atlas-INDEL FAM134C 162427 hgsc.bcm.edu hg19 17 40733882 40733889 + Frame_Shift_Del DEL CAGAAGTT CAGAAGTT - novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 CAGAAGTT CAGAAGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . FAM134C NM_178126 exon9 c.1344_1351del p.448_451del . . 97.0 22.0 47.0 0.0 . 26 . . Atlas-Indel,Pindel CRELD2 79174 hgsc.bcm.edu hg19 22 50315943 50315980 + Frame_Shift_Del DEL CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG - novel TCGA-CC-5263-01A-01D-A12Z-10 TCGA-CC-5263-10B-01D-A12Z-10 CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b3dc66b5-ad21-46ef-bea2-13b364e8f7ee e354902e-c055-43ca-ad8a-29b0cd8fd07d . CRELD2 NM_001135101 exon6 c.593_620del p.198_207del . . 112.0 32.0 57.0 0.0 . 57 . . Atlas-INDEL