Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MACF1 23499 hgsc.bcm.edu hg19 1 39907974 39907974 + Missense_Mutation SNP G G T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . MACF1 NM_012090 exon73 c.G12753T p.E4251D GGGTGAGAAAATT . 123.0 39.0 128.0 0.0 . 909 . . Atlas-SNP STXBP3 6814 hgsc.bcm.edu hg19 1 109339272 109339272 + Missense_Mutation SNP T T A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . STXBP3 NM_007269 exon15 c.T1280A p.I427N GGTTGATCCAGAA . 208.0 62.0 230.0 0.0 . 44 . . Atlas-SNP KPRP 448834 hgsc.bcm.edu hg19 1 152732812 152732812 + Missense_Mutation SNP C C T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . KPRP NM_001025231 exon2 c.C748T p.R250W CGCTCTCGGAGCA . 82.0 26.0 58.0 0.0 . 152 . . Atlas-SNP CD1E 913 hgsc.bcm.edu hg19 1 158325699 158325699 + Silent SNP C C T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . CD1E NM_001042584 exon4 c.C708T p.Y236Y ATTCTACCCAAAG . 320.0 14.0 273.0 0.0 . 129 . . Atlas-SNP ABCG5 64240 hgsc.bcm.edu hg19 2 44053584 44053584 + Missense_Mutation SNP T T G novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . ABCG5 NM_022436 exon6 c.A711C p.E237D AGCCAGTTCCACC . 184.0 61.0 150.0 0.0 . 72 . . Atlas-SNP CHRNA1 1134 hgsc.bcm.edu hg19 2 175624066 175624066 + Missense_Mutation SNP A A T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . CHRNA1 NM_001039523 exon3 c.T227A p.L76Q TGTTTCAGACGCA . 247.0 78.0 216.0 0.0 . 92 . . Atlas-SNP IDH1 3417 hgsc.bcm.edu hg19 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 bycluster TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc IDH1,NS,haematopoietic_neoplasm,0,788 IDH1 NM_005896 exon4 c.C394T p.R132C CATGACGACCTAT . 294.0 87.0 267.0 0.0 . 6310 . . Atlas-SNP TMPRSS7 344805 hgsc.bcm.edu hg19 3 111797619 111797619 + Missense_Mutation SNP C C T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . TMPRSS7 NM_001042575 exon15 c.C1877T p.A626V AGCAAGCGGAGGT . 231.0 64.0 218.0 0.0 . 126 . . Atlas-SNP SEMA5B 54437 hgsc.bcm.edu hg19 3 122629075 122629075 + Missense_Mutation SNP G G A rs369693926 TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . SEMA5B NM_001256347 exon23 c.C3533T p.T1178M GTAGTCGTGTACA . 705.0 231.0 620.0 0.0 . 303 . . Atlas-SNP ZNF518B 85460 hgsc.bcm.edu hg19 4 10446101 10446101 + Missense_Mutation SNP A A T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . ZNF518B NM_053042 exon3 c.T1852A p.L618I TCTTTAATTCCAA . 293.0 77.0 403.0 1.0 . 116 . . Atlas-SNP GYPA 2993 hgsc.bcm.edu hg19 4 145039884 145039884 + Missense_Mutation SNP T T A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc GYPA,right_upper_lobe,carcinoma,0,1 GYPA NM_002099 exon4 c.A254T p.H85L AAATGATGGGCAA . 370.0 87.0 722.0 0.0 . 27 . . Atlas-SNP FAM53C 51307 hgsc.bcm.edu hg19 5 137681062 137681062 + Missense_Mutation SNP C C T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . FAM53C NM_001135647 exon4 c.C685T p.R229C CCTCAGCGCCGCT . 49.0 14.0 29.0 0.0 . 35 . . Atlas-SNP TYW1 55253 hgsc.bcm.edu hg19 7 66582482 66582482 + Silent SNP G G A rs13221716 TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . TYW1 NM_018264 exon13 c.G1575A p.P525P CGAGCCGGTTACT . 198.0 8.0 186.0 0.0 . 71 . . Atlas-SNP CHPF2 54480 hgsc.bcm.edu hg19 7 150934562 150934562 + Missense_Mutation SNP G G A rs139379425 bycluster;byfrequency;alternate_allele TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . CHPF2 NM_019015 exon4 c.G1114A p.V372M TTTGAGGTGCTGG . 236.0 62.0 97.0 0.0 . 52 . G|1.000;T|0.000 Atlas-SNP TNKS 8658 hgsc.bcm.edu hg19 8 9627614 9627614 + Splice_Site SNP A A T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . TNKS NM_003747 exon26 c.3741-2A>T . TTCCTTAGACAAA . 38.0 21.0 28.0 0.0 . 198 . . Atlas-SNP RAB11FIP1 80223 hgsc.bcm.edu hg19 8 37756823 37756823 + Missense_Mutation SNP T T A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . RAB11FIP1 NM_025151 exon1 c.A137T p.Q46L CCCACCTGGATCA . 79.0 26.0 24.0 0.0 . 105 . . Atlas-SNP MMP16 4325 hgsc.bcm.edu hg19 8 89180036 89180036 + Missense_Mutation SNP C C T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . MMP16 NM_005941 exon4 c.G571A p.G191S GGAAACCAGATGC . 135.0 33.0 188.0 0.0 . 176 . . Atlas-SNP TMC1 117531 hgsc.bcm.edu hg19 9 75355074 75355074 + Silent SNP T T A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . TMC1 NM_138691 exon9 c.T402A p.L134L GGCTCTTGGGAAA . 275.0 67.0 271.0 0.0 . 87 . . Atlas-SNP HEMGN 55363 hgsc.bcm.edu hg19 9 100693389 100693389 + Missense_Mutation SNP T T C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . HEMGN NM_197978 exon3 c.A288G p.I96M CTCCACTATTTCC . 166.0 21.0 197.0 0.0 . 55 . . Atlas-SNP CDK5RAP2 55755 hgsc.bcm.edu hg19 9 123177407 123177407 + Missense_Mutation SNP C C T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc CDK5RAP2,NS,carcinoma,0,2 CDK5RAP2 NM_018249 exon28 c.G4208A p.R1403Q AAAGTTCGAATTT . 280.0 32.0 209.0 0.0 . 157 . . Atlas-SNP MAPKAP1 79109 hgsc.bcm.edu hg19 9 128230302 128230302 + Missense_Mutation SNP T T C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . MAPKAP1 NM_001006617 exon10 c.A1294G p.I432V AATCGATTGAGAT . 394.0 30.0 384.0 0.0 . 68 . . Atlas-SNP PCDH15 65217 hgsc.bcm.edu hg19 10 55839135 55839135 + Missense_Mutation SNP G G A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc PCDH15_ENST00000417177,caecum,carcinoma,+1,3 PCDH15 NM_001142763 exon18 c.C2062T p.R688C TGTAGCGATCAGT . 151.0 61.0 264.0 1.0 . 1715 . . Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129901092 129901092 + Silent SNP T T A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . MKI67 NM_002417 exon13 c.A9012T p.G3004G GACGCTTCCATCT . 73.0 32.0 107.0 0.0 . 363 . . Atlas-SNP OR8H2 390151 hgsc.bcm.edu hg19 11 55872687 55872687 + Missense_Mutation SNP C C T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc OR8H2,NS,carcinoma,0,1 OR8H2 NM_001005200 exon1 c.C169T p.H57Y CAGCTTCACACTC . 302.0 33.0 301.0 1.0 . 117 . . Atlas-SNP SUV420H1 51111 hgsc.bcm.edu hg19 11 67957441 67957441 + Missense_Mutation SNP T T A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . SUV420H1 NM_017635 exon2 c.A103T p.T35S TCCCCGTGTGCTG . 462.0 122.0 538.0 0.0 . 125 . . Atlas-SNP LRTOMT 220074 hgsc.bcm.edu hg19 11 71819726 71819726 + Missense_Mutation SNP C C A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . LRTOMT NM_001145309 exon9 c.C631A p.L211M GCAGACCTGGTGC . 36.0 9.0 28.0 0.0 . 20 . . Atlas-SNP PICALM 8301 hgsc.bcm.edu hg19 11 85712084 85712084 + Silent SNP A A G novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . PICALM NM_007166 exon10 c.T1011C p.A337A CTTTAAAGCTTTC . 584.0 158.0 520.0 0.0 . 82 . . Atlas-SNP PRMT8 56341 hgsc.bcm.edu hg19 12 3702274 3702274 + Missense_Mutation SNP G G A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . PRMT8 NM_019854 exon10 c.G1111A p.D371N GACCTCGATTTCA . 126.0 15.0 108.0 0.0 . 97 . . Atlas-SNP PCDH20 64881 hgsc.bcm.edu hg19 13 61987587 61987587 + Silent SNP C C T rs201107730 by1000genomes;alternate_allele TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc PCDH20_ENST00000409186,caecum,carcinoma,0,2 PCDH20 NM_022843 exon2 c.G645A p.S215S CCACACCGAGATC . 92.0 20.0 107.0 1.0 . 265 . C|1.000;A|0.000 Atlas-SNP TMEM260 0 hgsc.bcm.edu hg19 14 57075883 57075883 + Silent SNP C C G novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . . NM_017799 exon6 c.C696G p.P232P GCTGCCCTATGTC . 610.0 133.0 582.0 0.0 . . . . Atlas-SNP ADAMTS7 11173 hgsc.bcm.edu hg19 15 79063584 79063584 + Missense_Mutation SNP C C T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . ADAMTS7 NM_014272 exon16 c.G2438A p.G813D TGGCCACCTGCCT . 208.0 39.0 142.0 0.0 . 142 . . Atlas-SNP CDH1 999 hgsc.bcm.edu hg19 16 68856129 68856129 + Splice_Site SNP G G A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc CDH1,NS,carcinoma,0,2 CDH1 NM_004360 exon12 c.1936+1G>A . ACCCAAGTGGGTA . 89.0 17.0 82.0 0.0 . 535 . . Atlas-SNP SGCA 6442 hgsc.bcm.edu hg19 17 48244792 48244792 + Missense_Mutation SNP G G T rs371675217 alternate_allele TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc SGCA,colon,carcinoma,0,1 SGCA NM_001135697 exon2 c.G101T p.R34L TGGGCCGTGTCTT . 219.0 51.0 130.0 0.0 . 35 . . Atlas-SNP SIPA1L3 23094 hgsc.bcm.edu hg19 19 38610466 38610466 + Silent SNP C C T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . SIPA1L3 NM_015073 exon9 c.C2812T p.L938L ATCTTCCTACAGG . 76.0 31.0 47.0 0.0 . 150 . . Atlas-SNP KRTAP10-11 386678 hgsc.bcm.edu hg19 21 46066650 46066650 + Missense_Mutation SNP C C G novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . KRTAP10-11 NM_198692 exon1 c.C275G p.S92C GCACCTCCTCCCC . 247.0 23.0 191.0 0.0 . 36 . . Atlas-SNP GPR82 27197 hgsc.bcm.edu hg19 X 41586732 41586732 + Missense_Mutation SNP T T A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . GPR82 NM_080817 exon3 c.T453A p.F151L CAACTTTGCTAGA . 100.0 13.0 182.0 0.0 . 52 . . Atlas-SNP SMC1A 8243 hgsc.bcm.edu hg19 X 53409455 53409455 + Missense_Mutation SNP T T A novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . SMC1A NM_006306 exon21 c.A3257T p.K1086M AGGGCCTTATAGA . 139.0 38.0 137.0 0.0 . 112 . . Atlas-SNP TCEANC2 127428 hgsc.bcm.edu hg19 1 54520147 54520148 + Frame_Shift_Ins INS - - T novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . TCEANC2 NM_153035 exon2 c.52_53insT p.K18fs . . 151.0 43.0 110.0 0.0 . 17 . . Atlas-Indel,Pindel C18orf8 29919 hgsc.bcm.edu hg19 18 21104108 21104109 + Frame_Shift_Ins INS - - C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . C18orf8 NM_013326 exon11 c.976_977insC p.T326fs . . 170.0 10.0 155.0 0.0 . 58 . . Atlas-INDEL ANKRD17 26057 hgsc.bcm.edu hg19 4 74043114 74043115 + Frame_Shift_Ins INS - - C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . ANKRD17 NM_198889 exon2 c.530_531insG p.A177fs . . 129.0 10.0 158.0 0.0 . 214 . . Atlas-INDEL KAT2A 2648 hgsc.bcm.edu hg19 17 40272817 40272818 + Frame_Shift_Ins INS - - C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc KAT2A,NS,carcinoma,0,2 KAT2A NM_021078 exon2 c.370_371insG p.K124fs . . 166.0 34.0 106.0 0.0 . 54 . . Atlas-INDEL VGF 7425 hgsc.bcm.edu hg19 7 100807026 100807028 + In_Frame_Del DEL CCT CCT - novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 CCT CCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . VGF NM_003378 exon2 c.1098_1100del p.366_367del . . 126.0 11.0 46.0 0.0 . 29 . . Atlas-INDEL USP37 57695 hgsc.bcm.edu hg19 2 219423315 219423315 + Frame_Shift_Del DEL T T - novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . USP37 NM_020935 exon4 c.63delG p.K21fs . . 299.0 86.0 328.0 0.0 . 76 . . Atlas-Indel,Pindel HOXA10 3206 hgsc.bcm.edu hg19 7 27213355 27213356 + Frame_Shift_Ins INS - - G novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . HOXA10 NM_018951 exon1 c.571_572insC p.F191fs . . 97.0 10.0 17.0 0.0 . 55 . . Atlas-INDEL CDHR5 53841 hgsc.bcm.edu hg19 11 618063 618064 + Frame_Shift_Ins INS - - C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . CDHR5 NM_021924 exon14 c.2009_2010insG p.A670fs . . 95.0 17.0 68.0 0.0 . 77 . . Atlas-INDEL KRTAP5-11 440051 hgsc.bcm.edu hg19 11 71293866 71293867 + Frame_Shift_Ins INS - - C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . KRTAP5-11 NM_001005405 exon1 c.18_19insG p.C6fs . . 300.0 22.0 224.0 0.0 . 36 . . Atlas-INDEL SPTBN2 6712 hgsc.bcm.edu hg19 11 66461311 66461312 + Frame_Shift_Ins INS - - C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . SPTBN2 NM_006946 exon22 c.4525_4526insG p.P1509fs . . 116.0 17.0 95.0 0.0 . 188 . . Atlas-INDEL BAP1 8314 hgsc.bcm.edu hg19 3 52437456 52437456 + Frame_Shift_Del DEL C C - novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . BAP1 NM_004656 exon13 c.1706delT p.V569fs . . 53.0 19.0 47.0 0.0 . 371 . . Atlas-INDEL CBS 875 hgsc.bcm.edu hg19 21 44492127 44492128 + Frame_Shift_Ins INS - - G novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . CBS NM_000071 exon3 c.177_178insC p.P59fs . . 191.0 13.0 123.0 0.0 . 85 . . Atlas-INDEL MAPKBP1 23005 hgsc.bcm.edu hg19 15 42110257 42110257 + Frame_Shift_Del DEL A A - novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . MAPKBP1 NM_001128608 exon18 c.1972delC p.Q658fs . . 192.0 45.0 147.0 0.0 . 120 . . Atlas-Indel,Pindel GZMK 3003 hgsc.bcm.edu hg19 5 54320547 54320548 + Frame_Shift_Ins INS - - C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . GZMK NM_002104 exon2 c.124_125insC p.A42fs . . 174.0 11.0 159.0 0.0 . 39 . . Atlas-INDEL EFCC1 79825 hgsc.bcm.edu hg19 3 128758638 128758639 + Frame_Shift_Ins INS - - C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . . NM_024768 exon8 c.1744_1745insC p.A582fs . . 172.0 14.0 151.0 0.0 . . . . Atlas-INDEL ZKSCAN8 7745 hgsc.bcm.edu hg19 6 28121267 28121268 + In_Frame_Ins INS - - AAA novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . . NM_006298 exon6 c.1209_1210insAAA p.E403delinsEK . . 106.0 13.0 83.0 0.0 . . . . Atlas-INDEL COL12A1 1303 hgsc.bcm.edu hg19 6 75806972 75806973 + Frame_Shift_Ins INS - - G novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . COL12A1 NM_004370 exon59 c.8574_8575insC p.P2858fs . . 171.0 20.0 137.0 0.0 . 385 . . Atlas-INDEL POU6F1 5463 hgsc.bcm.edu hg19 12 51589910 51589911 + Frame_Shift_Ins INS - - C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . POU6F1 NM_002702 exon3 c.92_93insG p.A31fs . . 116.0 13.0 58.0 0.0 . 31 . . Atlas-INDEL CCDC104 112942 hgsc.bcm.edu hg19 2 55772122 55772124 + In_Frame_Del DEL AAG AAG - novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 AAG AAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . CCDC104 NM_080667 exon10 c.1006_1008del p.336_336del . . 259.0 59.0 439.0 0.0 . 35 . . Atlas-Indel,Pindel AMTN 401138 hgsc.bcm.edu hg19 4 71396955 71396955 + Frame_Shift_Del DEL C C - novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . AMTN NM_212557 exon8 c.556delA p.T186fs . . 202.0 14.0 184.0 0.0 . 28 . . Atlas-INDEL EPN1 29924 hgsc.bcm.edu hg19 19 56206198 56206199 + Frame_Shift_Del DEL TG TG - novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . EPN1 NM_001130071 exon10 c.1628_1629del p.543_543del . . 105.0 11.0 71.0 0.0 . 98 . . Atlas-INDEL CHSY1 22856 hgsc.bcm.edu hg19 15 101717654 101717655 + Frame_Shift_Ins INS - - C novel TCGA-CC-5260-01A-01D-A12Z-10 TCGA-CC-5260-10B-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3bacc189-01b8-46cc-a442-f393c0f428c6 bf471c04-91b1-4ccc-9cd2-101b7f008edc . CHSY1 NM_014918 exon3 c.2348_2349insG p.E783fs . . 302.0 28.0 240.0 0.0 . 60 . . Atlas-INDEL