Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CEP104 9731 hgsc.bcm.edu hg19 1 3754080 3754080 + Nonsense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 CEP104,colon,carcinoma,0,1 CEP104 NM_014704 exon9 c.C895T p.R299X GTCTTCGCATCTA . 61.0 3.0 53.0 0.0 . 79 . . Atlas-SNP KLHL21 9903 hgsc.bcm.edu hg19 1 6653499 6653499 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 KLHL21,right_upper_lobe,carcinoma,0,1 KLHL21 NM_014851 exon4 c.G1720A p.E574K CCAACTCGAAGCC . 51.0 3.0 50.0 1.0 . 27 . . Atlas-SNP KAZN 23254 hgsc.bcm.edu hg19 1 15287300 15287300 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KAZN NM_015209 exon2 c.C347T p.S116L TCCTCTCGGCCAC . 85.0 5.0 51.0 0.0 . 57 . . Atlas-SNP ZNF683 257101 hgsc.bcm.edu hg19 1 26691310 26691310 + Missense_Mutation SNP G G C rs145815386 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF683 NM_173574 exon4 c.C727G p.L243V GCCCCAGCTCATT . 7.0 6.0 0.0 0.0 . 51 . . Atlas-SNP TINAGL1 64129 hgsc.bcm.edu hg19 1 32052549 32052549 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 TINAGL1,right_upper_lobe,carcinoma,0,1 TINAGL1 NM_022164 exon12 c.G1373A p.R458H GGGGCCGCGTGGG . 10.0 2.0 49.0 0.0 . 35 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34006774 34006774 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CSMD2 NM_052896 exon58 c.G8981A p.C2994Y TTGGTGCAGCTCA . 123.0 5.0 117.0 0.0 . 946 . . Atlas-SNP FOXD3 27022 hgsc.bcm.edu hg19 1 63789224 63789224 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 FOXD3,right_upper_lobe,carcinoma,0,1 FOXD3 NM_012183 exon1 c.C495T p.S165S CCTGAGCGGCATC . 69.0 3.0 70.0 0.0 . 15 . . Atlas-SNP JAK1 3716 hgsc.bcm.edu hg19 1 65335078 65335078 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . JAK1 NM_002227 exon6 c.A563T p.E188V AGACACTCGTTCT . 123.0 35.0 100.0 0.0 . 209 . . Atlas-SNP CLCA4 22802 hgsc.bcm.edu hg19 1 87045908 87045908 + Silent SNP T T A rs77594462 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CLCA4 NM_012128 exon14 c.T2640A p.T880T ACCTACTCCTACT . 107.0 26.0 43.0 0.0 . 131 . . Atlas-SNP PTPN22 26191 hgsc.bcm.edu hg19 1 114380935 114380935 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PTPN22 NM_015967 exon13 c.G1087A p.A363T CTTTTGCACTTAT . 100.0 4.0 99.0 0.0 . 90 . . Atlas-SNP WDR3 10885 hgsc.bcm.edu hg19 1 118495158 118495158 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . WDR3 NM_006784 exon19 c.A2024G p.H675R GTCATCACCAGGA . 93.0 4.0 93.0 0.0 . 81 . . Atlas-SNP NBPF10 100132406 hgsc.bcm.edu hg19 1 145367777 145367777 + Missense_Mutation SNP G G T rs200743139 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 NBPF10,NS,carcinoma,0,1 NBPF10 NM_001039703 exon83 c.G10373T p.R3458M GAAGAAGGGGAAG . 6.0 3.0 2.0 0.0 . 221 . . Atlas-SNP LCE1E 353135 hgsc.bcm.edu hg19 1 152759984 152759984 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LCE1E NM_178353 exon2 c.C209A p.S70Y GCAGCTCTGGGGG . 95.0 46.0 134.0 0.0 . 26 . . Atlas-SNP DENND4B 9909 hgsc.bcm.edu hg19 1 153907287 153907287 + Missense_Mutation SNP G G C rs199597671 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DENND4B NM_014856 exon18 c.C2722G p.Q908E GCTGCTGCTGCTG . 51.0 6.0 25.0 0.0 . 210 . . Atlas-SNP SLC50A1 55974 hgsc.bcm.edu hg19 1 155110121 155110121 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SLC50A1 NM_018845 exon4 c.G367A p.E123K AACCCTGAGGCCC . 97.0 28.0 68.0 0.0 . 16 . . Atlas-SNP FAM189B 10712 hgsc.bcm.edu hg19 1 155223732 155223732 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FAM189B NM_006589 exon4 c.T431C p.L144P CGGAGGAGGGGAA . 95.0 6.0 57.0 0.0 . 51 . . Atlas-SNP KIRREL 55243 hgsc.bcm.edu hg19 1 158061246 158061246 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 KIRREL,NS,carcinoma,0,1 KIRREL NM_018240 exon11 c.C1371T p.T457T GCTCACCATCAAC . 64.0 12.0 57.0 0.0 . 346 . . Atlas-SNP DCAF6 55827 hgsc.bcm.edu hg19 1 168034975 168034975 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DCAF6 NM_001198956 exon19 c.T2587C p.F863L CATCCGTTTGACC . 87.0 4.0 63.0 0.0 . 99 . . Atlas-SNP SLC9C2 284525 hgsc.bcm.edu hg19 1 173476077 173476077 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_178527 exon25 c.T3143G p.I1048S ACAATGATAACAA . 184.0 38.0 169.0 0.0 . . . . Atlas-SNP KIF21B 23046 hgsc.bcm.edu hg19 1 200957983 200957983 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KIF21B NM_017596 exon22 c.C3209T p.S1070F TGGGAGGAGCCTG . 103.0 6.0 90.0 0.0 . 208 . . Atlas-SNP KIF21B 23046 hgsc.bcm.edu hg19 1 200978071 200978071 + Silent SNP G G A rs199591058 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 KIF21B,NS,carcinoma,0,1 KIF21B NM_017596 exon3 c.C273T p.A91A CTTCCCGGCCCCC . 41.0 2.0 29.0 0.0 . 208 . G|0.999;A|0.001 Atlas-SNP IGFN1 91156 hgsc.bcm.edu hg19 1 201182025 201182025 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . IGFN1 NM_001164586 exon12 c.A8004G p.P2668P AGGGCCAGGGGGC . 95.0 4.0 70.0 0.0 . 220 . . Atlas-SNP KLHDC8A 55220 hgsc.bcm.edu hg19 1 205306696 205306696 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KLHDC8A NM_018203 exon6 c.C884T p.T295M TCCGCCGTCTCCA . 87.0 5.0 46.0 0.0 . 31 . . Atlas-SNP FCAMR 83953 hgsc.bcm.edu hg19 1 207133090 207133090 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FCAMR NM_001170631 exon7 c.A1507G p.M503V CCAGCATGGTAGA . 88.0 23.0 93.0 0.0 . 125 . . Atlas-SNP DNAH14 127602 hgsc.bcm.edu hg19 1 225525167 225525167 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DNAH14 NM_001373 exon65 c.C10001T p.A3334V AAAATGCTATGAA . 331.0 59.0 283.0 0.0 . 300 . . Atlas-SNP PRSS38 339501 hgsc.bcm.edu hg19 1 228033905 228033905 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PRSS38 NM_183062 exon5 c.T977C p.L326P CAGTGCTGTGAGG . 52.0 4.0 30.0 0.0 . 55 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228511085 228511085 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OBSCN NM_001271223 exon67 c.A18301G p.S6101G CCTGTGAGCTTTG . 122.0 5.0 90.0 0.0 . 2142 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228547659 228547659 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OBSCN NM_052843 exon81 c.G19066T p.G6356W TCATCGGGGCATC . 113.0 6.0 77.0 0.0 . 2142 . . Atlas-SNP ACTN2 88 hgsc.bcm.edu hg19 1 236906307 236906307 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ACTN2,caecum,carcinoma,0,1 ACTN2 NM_001103 exon11 c.A1219G p.R407G AAGTTCAGGCAGA . 62.0 3.0 48.0 0.0 . 191 . . Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240370636 240370636 + Nonsense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 FMN2,NS,malignant_melanoma,0,3 FMN2 NM_020066 exon5 c.G2524T p.E842X AGCCACGAACACT . 120.0 5.0 88.0 0.0 . 451 . . Atlas-SNP COLEC11 78989 hgsc.bcm.edu hg19 2 3652045 3652045 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 COLEC11_ENST00000418971,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,2 COLEC11 NM_001255985 exon3 c.G157A p.V53I ATCCTCGTCCCTG . 83.0 4.0 89.0 0.0 . 93 . . Atlas-SNP RHOB 388 hgsc.bcm.edu hg19 2 20647265 20647265 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 RHOB,colon,carcinoma,0,1 RHOB NM_004040 exon1 c.C39T p.D13D GGGCGACGGCGCG . 27.0 2.0 33.0 0.0 . 18 . . Atlas-SNP ATAD2B 54454 hgsc.bcm.edu hg19 2 23980414 23980414 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ATAD2B NM_017552 exon25 c.C3952A p.P1318T TTTCTGGTTTTTC . 219.0 53.0 186.0 0.0 . 110 . . Atlas-SNP C2orf44 80304 hgsc.bcm.edu hg19 2 24261849 24261849 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . C2orf44 NM_025203 exon2 c.G516A p.V172V TGCCACCACCAGC . 83.0 21.0 77.0 0.0 . 56 . . Atlas-SNP AGBL5 60509 hgsc.bcm.edu hg19 2 27278977 27278977 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 AGBL5_ENST00000323064,lower_third,carcinoma,0,2 AGBL5 NM_021831 exon7 c.G1336A p.G446R ATGTACGGAAACA . 48.0 2.0 40.0 0.0 . 126 . . Atlas-SNP IFT172 26160 hgsc.bcm.edu hg19 2 27679434 27679434 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . IFT172 NM_015662 exon30 c.A3315G p.R1105R AAGCAGTCTAACT . 81.0 4.0 74.0 0.0 . 119 . . Atlas-SNP CYP26B1 56603 hgsc.bcm.edu hg19 2 72359542 72359542 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CYP26B1 NM_019885 exon6 c.G1353A p.L451L CACCTTCAGGAAC . 93.0 4.0 94.0 0.0 . 73 . . Atlas-SNP INO80B 83444 hgsc.bcm.edu hg19 2 74682605 74682605 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 INO80B,NS,carcinoma,0,1 INO80B NM_031288 exon2 c.A131G p.K44R AGCACAAGAAGAA . 49.0 2.0 39.0 0.0 . 37 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84932627 84932627 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DNAH6 NM_001370 exon52 c.C8483A p.A2828E CATCAGCAAAGCA . 105.0 19.0 65.0 0.0 . 194 . . Atlas-SNP REV1 51455 hgsc.bcm.edu hg19 2 100019562 100019562 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 REV1,colon,carcinoma,0,1 REV1 NM_016316 exon20 c.G3174T p.K1058N AGGATTCTTTGGC . 51.0 3.0 50.0 0.0 . 100 . . Atlas-SNP TBC1D8 11138 hgsc.bcm.edu hg19 2 101656711 101656711 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 TBC1D8,NS,carcinoma,0,1 TBC1D8 NM_001102426 exon6 c.G964A p.A322T CAGAGGCGAACAT . 61.0 3.0 60.0 0.0 . 169 . . Atlas-SNP LCT 3938 hgsc.bcm.edu hg19 2 136566972 136566972 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LCT NM_002299 exon8 c.G2945A p.R982Q AAAATCCGAGACC . 85.0 5.0 68.0 0.0 . 309 . . Atlas-SNP PKP4 8502 hgsc.bcm.edu hg19 2 159481873 159481873 + Nonsense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PKP4 NM_001005476 exon7 c.C1087T p.Q363X ATGGAGCAATTCG . 268.0 48.0 223.0 0.0 . 133 . . Atlas-SNP FAP 2191 hgsc.bcm.edu hg19 2 163031427 163031427 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FAP NM_004460 exon22 c.T1919C p.L640P TTGAAAAGACCAG . 93.0 4.0 86.0 0.0 . 122 . . Atlas-SNP TNS1 7145 hgsc.bcm.edu hg19 2 218713231 218713231 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TNS1 NM_022648 exon17 c.A1634G p.D545G GACTTGTCCAGAC . 67.0 4.0 95.0 0.0 . 251 . . Atlas-SNP TNS1 7145 hgsc.bcm.edu hg19 2 218762666 218762666 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 .,2 TNS1 NM_022648 exon6 c.A23T p.E8V CTGTCCTCCATGG . 48.0 4.0 44.0 0.0 . 251 . . Atlas-SNP FEV 54738 hgsc.bcm.edu hg19 2 219849754 219849754 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FEV NM_017521 exon1 c.A44G p.Y15C GGCAGGTACATGT . 73.0 4.0 48.0 0.0 . 10 . . Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220333895 220333895 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 SPEG,NS,carcinoma,0,1 SPEG NM_005876 exon13 c.T3509C p.M1170T AGAAGATGCCATC . 63.0 4.0 69.0 0.0 . 272 . . Atlas-SNP COL4A4 1286 hgsc.bcm.edu hg19 2 228012135 228012135 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . COL4A4 NM_000092 exon2 c.G65A p.G22D CAGGGACCTGTGG . 56.0 8.0 62.0 0.0 . 215 . . Atlas-SNP SH3BP4 23677 hgsc.bcm.edu hg19 2 235950464 235950464 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SH3BP4 NM_014521 exon4 c.A1051G p.T351A GGGGAGACCCAGC . 68.0 4.0 54.0 0.0 . 109 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238289663 238289663 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 COL6A3_ENST00000392004,colon,carcinoma,0,3 COL6A3 NM_004369 exon5 c.G1792A p.D598N AGGAGTCGAAAGC . 56.0 3.0 49.0 0.0 . 608 . . Atlas-SNP ILKAP 80895 hgsc.bcm.edu hg19 2 239079271 239079271 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ILKAP,NS,carcinoma,0,1 ILKAP NM_030768 exon12 c.G1085A p.R362H TCGTAGCGGGCGT . 69.0 3.0 111.0 0.0 . 42 . . Atlas-SNP OR6B3 150681 hgsc.bcm.edu hg19 2 240984862 240984862 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OR6B3 NM_173351 exon1 c.C628G p.P210A GGAGTGGAAACAC . 279.0 55.0 256.0 0.0 . 37 . . Atlas-SNP SCN11A 11280 hgsc.bcm.edu hg19 3 38921489 38921489 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SCN11A NM_014139 exon19 c.A3345G p.G1115G ATACTTTCCAAAT . 88.0 4.0 80.0 0.0 . 296 . . Atlas-SNP WDR6 11180 hgsc.bcm.edu hg19 3 49052272 49052272 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . WDR6 NM_018031 exon6 c.T3007C p.S1003P ACCCCCTCCCTGA . 104.0 5.0 62.0 0.0 . 79 . . Atlas-SNP USP4 7375 hgsc.bcm.edu hg19 3 49362451 49362451 + Missense_Mutation SNP C C A rs117411669 bycluster;by1000genomes;alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . USP4 NM_001251877 exon5 c.G509T p.R170L AGCTTCCGCATCT . 150.0 42.0 131.0 0.0 . 72 . C|0.999;T|0.001 Atlas-SNP CACNA2D2 9254 hgsc.bcm.edu hg19 3 50413239 50413239 + Splice_Site SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CACNA2D2 NM_001174051 exon21 c.1845+1G>A . TCCTTACCTCATC . 76.0 4.0 58.0 0.0 . 82 . . Atlas-SNP HEMK1 51409 hgsc.bcm.edu hg19 3 50614592 50614592 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . HEMK1 NM_016173 exon5 c.T524C p.L175P TCTCCCTCAGCCT . 69.0 4.0 73.0 0.0 . 17 . . Atlas-SNP GNL3 26354 hgsc.bcm.edu hg19 3 52727767 52727767 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 GNL3,NS,carcinoma,0,1 GNL3 NM_014366 exon13 c.G1444C p.E482Q AAGCAGGAGGAGA . 134.0 10.0 123.0 0.0 . 37 . . Atlas-SNP FAM208A 23272 hgsc.bcm.edu hg19 3 56680996 56680996 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FAM208A NM_001112736 exon14 c.C1769T p.S590L GGAGCTGAGTATA . 241.0 31.0 201.0 0.0 . 113 . . Atlas-SNP MORC1 27136 hgsc.bcm.edu hg19 3 108723940 108723940 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MORC1 NM_014429 exon19 c.G1990T p.V664F GTTTGACATTTTC . 119.0 25.0 108.0 0.0 . 211 . . Atlas-SNP CASR 846 hgsc.bcm.edu hg19 3 121980604 121980604 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CASR NM_001178065 exon4 c.A722T p.E241V TCAGTGAACTCAT . 221.0 20.0 182.0 0.0 . 190 . . Atlas-SNP PDIA5 10954 hgsc.bcm.edu hg19 3 122849447 122849447 + Silent SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PDIA5 NM_006810 exon11 c.C894A p.V298V CCTCGTCATGTTC . 121.0 26.0 113.0 0.0 . 66 . . Atlas-SNP CPNE4 131034 hgsc.bcm.edu hg19 3 131624109 131624109 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CPNE4 NM_130808 exon2 c.A179T p.E60V CCTACCTCAAACC . 133.0 27.0 126.0 0.0 . 112 . . Atlas-SNP ACAD11 84129 hgsc.bcm.edu hg19 3 132337601 132337601 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ACAD11 NM_032169 exon11 c.G1291A p.E431K GACCCTCGACTTT . 238.0 63.0 202.0 0.0 . 78 . . Atlas-SNP ATP11B 23200 hgsc.bcm.edu hg19 3 182566270 182566270 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ATP11B,NS,carcinoma,0,1 ATP11B NM_014616 exon10 c.C776T p.A259V GTGTTGCGGTATA . 232.0 59.0 190.0 0.0 . 115 . . Atlas-SNP HRG 3273 hgsc.bcm.edu hg19 3 186383833 186383833 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . HRG NM_000412 exon1 c.A13G p.I5V GCACTCATTGCAG . 111.0 26.0 106.0 0.0 . 81 . . Atlas-SNP HES1 3280 hgsc.bcm.edu hg19 3 193854818 193854818 + Silent SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 HES1,NS,carcinoma,0,1 HES1 NM_005524 exon3 c.G273A p.L91L GAACCTGCAGCGG . 64.0 3.0 59.0 0.0 . 23 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195511811 195511811 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MUC4 NM_018406 exon2 c.C6640A p.P2214T AGGAAGGGCTGGT . 118.0 6.0 139.0 0.0 . 1505 . . Atlas-SNP FAM157A 728262 hgsc.bcm.edu hg19 3 197880164 197880164 + Silent SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FAM157A NM_001145248 exon2 c.G243A p.Q81Q GCAGCAGCAGCAG . 213.0 26.0 192.0 0.0 . 4 . . Atlas-SNP SLBP 7884 hgsc.bcm.edu hg19 4 1701341 1701341 + Missense_Mutation SNP G G C rs200085408 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SLBP NM_006527 exon5 c.C429G p.N143K CCCATAGTTGATC . 264.0 49.0 195.0 0.0 . 12 . G|0.999;C|0.001 Atlas-SNP EVC2 132884 hgsc.bcm.edu hg19 4 5642500 5642500 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . EVC2 NM_147127 exon10 c.A1211G p.K404R ATATCCTTGCTGA . 141.0 6.0 115.0 0.0 . 202 . . Atlas-SNP EVC 2121 hgsc.bcm.edu hg19 4 5798818 5798818 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 EVC,NS,carcinoma,0,1 EVC NM_153717 exon14 c.C1956T p.R652R ACTCCGCGGCAAC . 122.0 5.0 143.0 0.0 . 90 . . Atlas-SNP WDR1 9948 hgsc.bcm.edu hg19 4 10099482 10099482 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . WDR1 NM_017491 exon5 c.T411C p.S137S CACAGAAGAGCCA . 92.0 4.0 57.0 0.0 . 93 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88537513 88537513 + Missense_Mutation SNP A A C rs112275895 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DSPP NM_014208 exon5 c.A3699C p.E1233D CAATGAAAGCAGC . 221.0 21.0 158.0 0.0 . 174 . A|0.500;C|0.500 Atlas-SNP UCP1 7350 hgsc.bcm.edu hg19 4 141484320 141484320 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . UCP1 NM_021833 exon4 c.A572G p.E191G ACTAGCTCTGTAC . 122.0 6.0 139.0 0.0 . 33 . . Atlas-SNP WWC2 80014 hgsc.bcm.edu hg19 4 184233492 184233492 + Splice_Site SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 WWC2,NS,carcinoma,0,1 WWC2 NM_024949 exon22 c.3385-2A>G . TTTTCCAGGCTGA . 27.0 2.0 28.0 0.0 . 78 . . Atlas-SNP CCDC111 201973 hgsc.bcm.edu hg19 4 185615700 185615700 + Missense_Mutation SNP G G A rs200746705 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 .,1 CCDC111 NM_152683 exon14 c.G1450A p.A484T GATGAAGCAGATG . 53.0 8.0 71.0 0.0 . 43 . . Atlas-SNP ISL1 3670 hgsc.bcm.edu hg19 5 50683549 50683549 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ISL1 NM_002202 exon3 c.T444C p.S148S GCTCAGTCCCCTG . 99.0 4.0 107.0 0.0 . 65 . . Atlas-SNP ADAMTS6 11174 hgsc.bcm.edu hg19 5 64748641 64748641 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ADAMTS6 NM_197941 exon5 c.G736A p.V246M TGCTCACTGATCT . 324.0 58.0 251.0 0.0 . 174 . . Atlas-SNP GFM2 84340 hgsc.bcm.edu hg19 5 74021855 74021855 + Missense_Mutation SNP T T A rs145997856 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GFM2 NM_032380 exon18 c.A1823T p.E608V TCAAACTCAATCA . 122.0 10.0 102.0 0.0 . 38 . . Atlas-SNP ERAP2 64167 hgsc.bcm.edu hg19 5 96237302 96237302 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ERAP2,NS,carcinoma,0,2 ERAP2 NM_001130140 exon11 c.C1665T p.D555D ACAAGACGGGTGT . 44.0 2.0 60.0 0.0 . 77 . . Atlas-SNP PCDHB4 56131 hgsc.bcm.edu hg19 5 140503780 140503780 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 PCDHB4,right_upper_lobe,carcinoma,0,1 PCDHB4 NM_018938 exon1 c.C2200T p.H734Y CCAGGGCATCTGG . 33.0 2.0 47.0 0.0 . 177 . . Atlas-SNP PCDH12 51294 hgsc.bcm.edu hg19 5 141335035 141335035 + Silent SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PCDH12 NM_016580 exon1 c.C2382T p.S794S TTTGTGGGACTGC . 77.0 4.0 70.0 0.0 . 133 . . Atlas-SNP SLC6A7 6534 hgsc.bcm.edu hg19 5 149578931 149578931 + Splice_Site SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SLC6A7 NM_014228 exon5 c.723+2T>C . GCAAGGTGAAGCC . 95.0 4.0 78.0 0.0 . 52 . . Atlas-SNP SLIT3 6586 hgsc.bcm.edu hg19 5 168093513 168093513 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 SLIT3,NS,lymphoid_neoplasm,0,1 SLIT3 NM_001271946 exon36 c.G4539A p.S1513S TACAAACGAGGAG . 49.0 2.0 31.0 0.0 . 224 . . Atlas-SNP BTNL9 153579 hgsc.bcm.edu hg19 5 180486679 180486679 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 BTNL9,NS,carcinoma,0,1 BTNL9 NM_152547 exon11 c.C1425T p.H475H CTTCCACGACACC . 42.0 2.0 45.0 0.0 . 58 . . Atlas-SNP GCM2 9247 hgsc.bcm.edu hg19 6 10877430 10877430 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 GCM2,NS,carcinoma,0,1 GCM2 NM_004752 exon2 c.G286A p.G96S GGGAACCGTCGGG . 52.0 3.0 42.0 1.0 . 81 . . Atlas-SNP MUC21 394263 hgsc.bcm.edu hg19 6 30955247 30955247 + Missense_Mutation SNP C C T rs144122059 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MUC21 NM_001010909 exon2 c.C1295T p.A432V GTGGGGCCAACAC . 163.0 10.0 87.0 0.0 . 98 . . Atlas-SNP PRRC2A 7916 hgsc.bcm.edu hg19 6 31599160 31599160 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 PRRC2A,NS,carcinoma,0,1 PRRC2A NM_004638 exon16 c.C2710A p.R904S CCTGCCCGCGGAG . 44.0 2.0 71.0 0.0 . 152 . . Atlas-SNP MEA1 4201 hgsc.bcm.edu hg19 6 42980713 42980713 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MEA1 NM_014623 exon3 c.G357T p.E119D TCCCTCCTCATCT . 120.0 9.0 74.0 0.0 . 11 . . Atlas-SNP CAPN11 11131 hgsc.bcm.edu hg19 6 44148727 44148727 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CAPN11 NM_007058 exon18 c.T1862C p.L621P TCAACCTCATGGA . 98.0 4.0 56.0 0.0 . 66 . . Atlas-SNP DEFB113 245927 hgsc.bcm.edu hg19 6 49936572 49936572 + Nonsense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DEFB113 NM_001037729 exon2 c.A67T p.K23X TTTTTTTCTGTGG . 97.0 21.0 99.0 0.0 . 18 . . Atlas-SNP BMP5 653 hgsc.bcm.edu hg19 6 55639030 55639030 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . BMP5 NM_021073 exon4 c.A844G p.N282D TTACGTTGATACT . 230.0 32.0 175.0 0.0 . 94 . . Atlas-SNP MCHR2 84539 hgsc.bcm.edu hg19 6 100382375 100382375 + Silent SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 MCHR2,NS,carcinoma,-1,1 MCHR2 NM_001040179 exon5 c.G606T p.T202T TGTTATCGTCAAA . 58.0 3.0 42.0 0.0 . 97 . . Atlas-SNP DSE 29940 hgsc.bcm.edu hg19 6 116757465 116757465 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DSE NM_001080976 exon6 c.G1834C p.G612R AGAGATGGTCTCT . 135.0 6.0 52.0 0.0 . 98 . . Atlas-SNP LTV1 84946 hgsc.bcm.edu hg19 6 144184607 144184607 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LTV1 NM_032860 exon11 c.A1371G p.R457R GAAAAGAAGGCAA . 260.0 77.0 201.0 0.0 . 48 . . Atlas-SNP UTRN 7402 hgsc.bcm.edu hg19 6 145021342 145021342 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . UTRN NM_007124 exon52 c.A7772G p.D2591G GAGGAGATGTTCC . 94.0 4.0 62.0 0.0 . 327 . . Atlas-SNP SASH1 23328 hgsc.bcm.edu hg19 6 148846461 148846461 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SASH1 NM_015278 exon11 c.A1244G p.N415S TGACGAATCGCTC . 67.0 17.0 61.0 0.0 . 123 . . Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157522125 157522125 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ARID1B NM_020732 exon18 c.C4397A p.A1466E TGTGGGCAGCACG . 126.0 16.0 69.0 0.0 . 320 . . Atlas-SNP MRPL18 29074 hgsc.bcm.edu hg19 6 160212008 160212008 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 MRPL18,NS,malignant_melanoma,0,1 MRPL18 NM_014161 exon2 c.C89T p.P30L CCGAGCCGGCAGC . 68.0 3.0 52.0 0.0 . 25 . . Atlas-SNP SUN1 23353 hgsc.bcm.edu hg19 7 882841 882841 + Splice_Site SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SUN1 NM_001171946 exon5 c.452-2A>G . TTTTTTAGGTCTT . 90.0 5.0 78.0 0.0 . 157 . . Atlas-SNP LFNG 3955 hgsc.bcm.edu hg19 7 2552880 2552880 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LFNG NM_001166355 exon2 c.C137T p.T46I GATGGACAGATGG . 75.0 7.0 53.0 0.0 . 57 . . Atlas-SNP SP4 6671 hgsc.bcm.edu hg19 7 21469601 21469601 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SP4 NM_003112 exon3 c.A818G p.N273S TAAACAACGTGGC . 174.0 44.0 130.0 0.0 . 91 . . Atlas-SNP HOXA5 3202 hgsc.bcm.edu hg19 7 27181672 27181672 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 HOXA5,NS,carcinoma,0,1 HOXA5 NM_019102 exon2 c.C595T p.R199W CCGTCCGGGCCCT . 79.0 4.0 56.0 0.0 . 43 . . Atlas-SNP DDX56 54606 hgsc.bcm.edu hg19 7 44612257 44612257 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DDX56 NM_001257189 exon4 c.G470T p.R157L GAGTCACGAAGTT . 209.0 51.0 133.0 0.0 . 36 . . Atlas-SNP POMZP3 22932 hgsc.bcm.edu hg19 7 76240786 76240786 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . POMZP3 NM_012230 exon6 c.T560G p.L187R GGTTACAGGGAAG . 137.0 8.0 92.0 0.0 . 19 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82389961 82389961 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PCLO NM_033026 exon24 c.T15282C p.S5094S CTGAAGAGAATGT . 508.0 113.0 390.0 0.0 . 1506 . . Atlas-SNP FZD1 8321 hgsc.bcm.edu hg19 7 90894459 90894459 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 .,4 FZD1 NM_003505 exon1 c.A264G p.Q88Q GCAGCAACCGCCG . 4.0 2.0 2.0 0.0 . 64 . . Atlas-SNP BUD31 8896 hgsc.bcm.edu hg19 7 99017026 99017026 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 BUD31,NS,carcinoma,0,1 BUD31 NM_003910 exon6 c.G397A p.E133K ATCATCGAGTGCA . 71.0 3.0 57.0 0.0 . 12 . . Atlas-SNP CNPY4 245812 hgsc.bcm.edu hg19 7 99722425 99722425 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CNPY4 NM_152755 exon6 c.G661C p.E221Q CAGGAGGAGGAGG . 38.0 5.0 24.0 0.0 . 18 . . Atlas-SNP STAG3 10734 hgsc.bcm.edu hg19 7 99787154 99787154 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . STAG3 NM_012447 exon8 c.A802G p.R268G GCTGAAAGAAACA . 96.0 4.0 63.0 0.0 . 121 . . Atlas-SNP LRRC17 10234 hgsc.bcm.edu hg19 7 102575002 102575002 + Missense_Mutation SNP A A T rs77576273 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LRRC17 NM_005824 exon2 c.A642T p.E214D TAATGAAGAAGAA . 25.0 5.0 8.0 0.0 . 45 . . Atlas-SNP DOCK4 9732 hgsc.bcm.edu hg19 7 111381259 111381259 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DOCK4 NM_014705 exon46 c.A4904G p.Y1635C GCTGGGTAACTTA . 95.0 4.0 71.0 0.0 . 365 . . Atlas-SNP METTL2B 55798 hgsc.bcm.edu hg19 7 128117152 128117152 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . METTL2B NM_018396 exon2 c.T127C p.S43P GAGTGGTCGGAAG . 116.0 5.0 92.0 0.0 . 34 . . Atlas-SNP SCARA5 286133 hgsc.bcm.edu hg19 8 27779159 27779159 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 SCARA5,NS,lymphoid_neoplasm,0,1 SCARA5 NM_173833 exon4 c.C845T p.A282V GTGACCGCGTTGA . 30.0 3.0 45.0 0.0 . 53 . . Atlas-SNP TEX15 56154 hgsc.bcm.edu hg19 8 30701385 30701385 + Nonsense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 TEX15,rectum,carcinoma,0,1 TEX15 NM_031271 exon1 c.C5149T p.R1717X AGCTTCGCAATGT . 91.0 30.0 99.0 1.0 . 350 . . Atlas-SNP IKBKB 3551 hgsc.bcm.edu hg19 8 42176090 42176090 + Missense_Mutation SNP C C G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . IKBKB NM_001556 exon13 c.C1261G p.L421V AGGAATCTCGCCT . 77.0 12.0 100.0 0.0 . 88 . . Atlas-SNP COPS5 10987 hgsc.bcm.edu hg19 8 67974167 67974167 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . COPS5 NM_006837 exon1 c.C65T p.A22V CTCTGAGCTTCCT . 92.0 7.0 71.0 0.0 . 29 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 68972975 68972975 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PREX2 NM_025170 exon11 c.T1300C p.L434L GTGCACTTGGGAC . 97.0 4.0 109.0 0.0 . 614 . . Atlas-SNP CRISPLD1 83690 hgsc.bcm.edu hg19 8 75927121 75927121 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CRISPLD1 NM_031461 exon6 c.G701A p.G234D GAGGGGGCTGTAG . 143.0 31.0 141.0 0.0 . 94 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77762578 77762578 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZFHX4 NM_024721 exon9 c.A3944G p.E1315G CAGCTGAGGGGTC . 92.0 5.0 78.0 0.0 . 878 . . Atlas-SNP VPS13B 157680 hgsc.bcm.edu hg19 8 100829851 100829851 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . VPS13B NM_017890 exon45 c.A8256C p.Q2752H TGGTCAAGATGGA . 232.0 49.0 147.0 0.0 . 811 . . Atlas-SNP ATAD2 29028 hgsc.bcm.edu hg19 8 124382155 124382155 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ATAD2 NM_014109 exon7 c.T837A p.D279E TTCATCATCTTCA . 210.0 20.0 135.0 0.0 . 160 . . Atlas-SNP ATAD2 29028 hgsc.bcm.edu hg19 8 124382158 124382158 + Missense_Mutation SNP T T A rs373069275 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ATAD2 NM_014109 exon7 c.A834T p.E278D ATCATCTTCATCA . 204.0 19.0 133.0 0.0 . 160 . . Atlas-SNP ANXA13 312 hgsc.bcm.edu hg19 8 124705521 124705521 + Nonsense_Mutation SNP C C T rs146521013 alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ANXA13 NM_001003954 exon9 c.G681A p.W227X AGTGCCCCAGCGG . 166.0 9.0 90.0 0.0 . 38 . C|1.000;A|0.000 Atlas-SNP EPPK1 83481 hgsc.bcm.edu hg19 8 144940354 144940354 + Silent SNP G G A rs375604799 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . EPPK1 NM_031308 exon1 c.C7068T p.R2356R GGGCACGCGGTGG . 22.0 10.0 23.0 0.0 . 199 . . Atlas-SNP OPLAH 26873 hgsc.bcm.edu hg19 8 145112137 145112137 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OPLAH NM_017570 exon11 c.G1509A p.L503L CATGCCCAGGGCC . 43.0 9.0 77.0 0.0 . 78 . . Atlas-SNP OPLAH 26873 hgsc.bcm.edu hg19 8 145112386 145112386 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 OPLAH,NS,carcinoma,0,1 OPLAH NM_017570 exon10 c.G1387A p.E463K TGGCCTCGTTGGC . 14.0 2.0 62.0 0.0 . 78 . . Atlas-SNP CPSF1 29894 hgsc.bcm.edu hg19 8 145634528 145634528 + Nonsense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CPSF1 NM_013291 exon2 c.C15A p.Y5X CTGTTTGTACACG . 30.0 8.0 42.0 0.0 . 92 . . Atlas-SNP TEK 7010 hgsc.bcm.edu hg19 9 27190548 27190548 + Missense_Mutation SNP C C G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TEK NM_000459 exon10 c.C1349G p.A450G TGAATGCCCCAAA . 183.0 17.0 184.0 0.0 . 250 . . Atlas-SNP NAA35 60560 hgsc.bcm.edu hg19 9 88631506 88631506 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . NAA35 NM_024635 exon18 c.G1621A p.D541N CGTGCCGATGGCT . 69.0 4.0 81.0 0.0 . 50 . . Atlas-SNP FGD3 89846 hgsc.bcm.edu hg19 9 95768397 95768397 + Missense_Mutation SNP G G A rs371917520 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 FGD3_ENST00000375482,colon,carcinoma,0,4 FGD3 NM_001083536 exon6 c.G772A p.V258I CGAGCCGTAGGGC . 50.0 2.0 45.0 0.0 . 116 . . Atlas-SNP WNK2 65268 hgsc.bcm.edu hg19 9 96021717 96021717 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . WNK2 NM_006648 exon11 c.C2887A p.P963T ACGCTGCCCCCTC . 21.0 4.0 31.0 0.0 . 277 . . Atlas-SNP ZNF618 114991 hgsc.bcm.edu hg19 9 116812389 116812389 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ZNF618_ENST00000374126,NS,NS,0,2 ZNF618 NM_133374 exon14 c.G2528A p.R843Q GGAGGCGGCTGCT . 36.0 2.0 39.0 0.0 . 184 . . Atlas-SNP COL27A1 85301 hgsc.bcm.edu hg19 9 117068878 117068878 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 COL27A1,colon,carcinoma,0,1 COL27A1 NM_032888 exon58 c.A5017G p.I1673V AACCTCATCCAGA . 50.0 2.0 56.0 0.0 . 200 . . Atlas-SNP TNC 3371 hgsc.bcm.edu hg19 9 117848274 117848274 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TNC NM_002160 exon3 c.T1736C p.I579T TGGCAGATGCACT . 110.0 6.0 77.0 0.0 . 282 . . Atlas-SNP SETX 23064 hgsc.bcm.edu hg19 9 135204112 135204112 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SETX NM_015046 exon10 c.T2873C p.I958T CTGTCTATCTGAG . 206.0 29.0 173.0 0.0 . 234 . . Atlas-SNP COL5A1 1289 hgsc.bcm.edu hg19 9 137593180 137593180 + Splice_Site SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . COL5A1 NM_000093 exon4 c.654+1G>A . TTTGAGGTGAGCA . 91.0 4.0 68.0 0.0 . 323 . . Atlas-SNP GPSM1 26086 hgsc.bcm.edu hg19 9 139250948 139250948 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 GPSM1,NS,carcinoma,0,1 GPSM1 NM_001145638 exon13 c.C1767T p.H589H AGGCCACGGCGAG . 16.0 3.0 44.0 1.0 . 50 . . Atlas-SNP CARD9 64170 hgsc.bcm.edu hg19 9 139265325 139265325 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 CARD9,colon,carcinoma,0,1 CARD9 NM_052813 exon4 c.G595A p.A199T TGAGCGCGGCGCC . 28.0 3.0 56.0 0.0 . 47 . . Atlas-SNP PITRM1 10531 hgsc.bcm.edu hg19 10 3208566 3208566 + Silent SNP C C T rs114690446 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 PITRM1,colon,carcinoma,-1,3 PITRM1 NM_014889 exon4 c.G273A p.Q91Q ACGGAACTGCACG . 31.0 9.0 14.0 0.0 . 109 . . Atlas-SNP PITRM1 10531 hgsc.bcm.edu hg19 10 3208567 3208567 + Missense_Mutation SNP T T G rs28416720 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 PITRM1,colon,carcinoma,0,3 PITRM1 NM_014889 exon4 c.A272C p.Q91P CGGAACTGCACGC . 30.0 9.0 13.0 0.0 . 109 . . Atlas-SNP MSRB2 22921 hgsc.bcm.edu hg19 10 23393130 23393130 + Missense_Mutation SNP C C G rs201493683 alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MSRB2 NM_012228 exon2 c.C176G p.T59S AACTAACCCCGGA . 117.0 25.0 101.0 0.0 . 21 . C|0.999;T|0.001 Atlas-SNP MICU1 10367 hgsc.bcm.edu hg19 10 74293540 74293540 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001195518 exon5 c.T501C p.G167G ATCCAGACCCAAG . 54.0 4.0 45.0 0.0 . . . . Atlas-SNP KAT6B 23522 hgsc.bcm.edu hg19 10 76781899 76781899 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_012330 exon16 c.A3282G p.E1094E GGAGGAAGAAGAG . 108.0 14.0 90.0 0.0 . . . . Atlas-SNP PLAC9 219348 hgsc.bcm.edu hg19 10 81901931 81901931 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PLAC9 NM_001012973 exon2 c.A158G p.E53G TCATGGAGGAGGT . 52.0 4.0 40.0 0.0 . 9 . . Atlas-SNP LDB3 11155 hgsc.bcm.edu hg19 10 88466389 88466389 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 LDB3,right_upper_lobe,carcinoma,-1,1 LDB3 NM_007078 exon7 c.C998T p.S333L CGGCTTCGCCACC . 27.0 3.0 82.0 0.0 . 164 . . Atlas-SNP C10orf12 26148 hgsc.bcm.edu hg19 10 98742889 98742889 + Missense_Mutation SNP G G A rs141178994 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 C10orf12,colon,carcinoma,0,1 C10orf12 NM_015652 exon1 c.G1742A p.R581H ATGAACGCCCCTC . 71.0 4.0 83.0 1.0 . 94 . G|1.000;A|0.000 Atlas-SNP LOXL4 84171 hgsc.bcm.edu hg19 10 100013493 100013493 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LOXL4 NM_032211 exon11 c.G1652A p.R551H AGCGGGCGGTCCT . 37.0 5.0 39.0 0.0 . 60 . . Atlas-SNP HPS1 3257 hgsc.bcm.edu hg19 10 100179909 100179909 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . HPS1 NM_000195 exon18 c.T1750C p.S584P TCAGAGACCAGAC . 75.0 4.0 69.0 0.0 . 65 . . Atlas-SNP GBF1 8729 hgsc.bcm.edu hg19 10 104118303 104118303 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GBF1 NM_001199378 exon10 c.T828C p.S276S CTCCTCTGCAAGT . 74.0 4.0 74.0 0.0 . 142 . . Atlas-SNP GBF1 8729 hgsc.bcm.edu hg19 10 104125298 104125298 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GBF1 NM_001199378 exon18 c.A2251G p.M751V AAGAAGATGATTG . 117.0 6.0 131.0 0.0 . 142 . . Atlas-SNP PDCD11 22984 hgsc.bcm.edu hg19 10 105202983 105202983 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PDCD11 NM_014976 exon33 c.T5017C p.S1673P TACGGCTCTCAGG . 92.0 4.0 63.0 0.0 . 160 . . Atlas-SNP CALHM2 51063 hgsc.bcm.edu hg19 10 105209279 105209279 + Silent SNP T T C rs201668640 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CALHM2 NM_015916 exon3 c.A420G p.S140S CGTGAGTGAGGAA . 55.0 4.0 60.0 0.0 . 30 . T|0.999;C|0.001 Atlas-SNP PDCD4 27250 hgsc.bcm.edu hg19 10 112641040 112641040 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PDCD4 NM_014456 exon3 c.T93C p.A31A AAATGCTGGGACT . 91.0 4.0 92.0 0.0 . 39 . . Atlas-SNP NHLRC2 374354 hgsc.bcm.edu hg19 10 115644138 115644138 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . NHLRC2 NM_198514 exon5 c.A1038G p.S346S AACATCAGGTATG . 87.0 4.0 90.0 0.0 . 56 . . Atlas-SNP DOCK1 1793 hgsc.bcm.edu hg19 10 129172467 129172467 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 DOCK1,colon,carcinoma,-1,2 DOCK1 NM_001380 exon35 c.G3601A p.V1201I TGCACCGTCAATG . 66.0 3.0 70.0 0.0 . 188 . . Atlas-SNP CALY 50632 hgsc.bcm.edu hg19 10 135140482 135140482 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 CALY,colon,carcinoma,0,1 CALY NM_015722 exon4 c.G260T p.R87L ATCATCCGTGCGG . 39.0 2.0 82.0 1.0 . 19 . . Atlas-SNP RRM1 6240 hgsc.bcm.edu hg19 11 4153626 4153626 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . RRM1 NM_001033 exon16 c.G1880A p.R627H ATACTCGCAGAGT . 93.0 4.0 75.0 0.0 . 31 . . Atlas-SNP OR51G2 81282 hgsc.bcm.edu hg19 11 4936238 4936238 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OR51G2 NM_001005238 exon1 c.T656G p.I219S AAGAGGATGAGCA . 116.0 32.0 101.0 0.0 . 70 . . Atlas-SNP OR51I1 390063 hgsc.bcm.edu hg19 11 5462447 5462447 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 OR51I1,NS,carcinoma,0,1 OR51I1 NM_001005288 exon1 c.C298A p.L100M GGACCAGGCAAGC . 139.0 37.0 89.0 0.0 . 66 . . Atlas-SNP SMPD1 6609 hgsc.bcm.edu hg19 11 6413367 6413367 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 SMPD1_ENST00000342245,NS,carcinoma,0,2 SMPD1 NM_000543 exon2 c.G1072A p.E358K CCTGCCGAAGCCC . 95.0 4.0 76.0 0.0 . 108 . . Atlas-SNP ZNF143 7702 hgsc.bcm.edu hg19 11 9537864 9537864 + Silent SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ZNF143,NS,carcinoma,0,1 ZNF143 NM_003442 exon14 c.G1641A p.T547T AGGAACGCACTCT . 34.0 2.0 42.0 0.0 . 38 . . Atlas-SNP AMPD3 272 hgsc.bcm.edu hg19 11 10503698 10503698 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . AMPD3 NM_000480 exon4 c.G542T p.R181L ACCACCGCTTCCC . 69.0 10.0 51.0 0.0 . 68 . . Atlas-SNP CCDC34 91057 hgsc.bcm.edu hg19 11 27384473 27384473 + Missense_Mutation SNP A A C rs77142757 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CCDC34 NM_030771 exon1 c.T269G p.V90G TCATCCACGTCTT . 98.0 13.0 116.0 0.0 . 48 . A|1.000;C|0.000 Atlas-SNP C11orf74 119710 hgsc.bcm.edu hg19 11 36631742 36631742 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . C11orf74 NM_138787 exon2 c.G89G p.G30G ATGAGCAAACATA . 81.0 4.0 57.0 0.0 . 22 . . Atlas-SNP OR4C46 119749 hgsc.bcm.edu hg19 11 51515417 51515417 + Missense_Mutation SNP A A C rs148928414 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OR4C46 NM_001004703 exon1 c.A136C p.T46P GTGGTCACCATCA . 117.0 26.0 78.0 0.0 . 96 . . Atlas-SNP OR5AS1 219447 hgsc.bcm.edu hg19 11 55798847 55798847 + Missense_Mutation SNP G G A rs201114315 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 OR5AS1,NS,carcinoma,0,1 OR5AS1 NM_001001921 exon1 c.G953A p.R318H TAAATCGTTTAAG . 35.0 2.0 26.0 0.0 . 121 . . Atlas-SNP MS4A6A 64231 hgsc.bcm.edu hg19 11 59947379 59947379 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MS4A6A NM_001247999 exon4 c.T291C p.A97A GAAGGAAGCAGAT . 121.0 5.0 95.0 0.0 . 85 . . Atlas-SNP TMEM138 51524 hgsc.bcm.edu hg19 11 61131933 61131933 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TMEM138 NM_016464 exon2 c.T71C p.V24A TCTTTGTCAATTC . 99.0 4.0 68.0 0.0 . 16 . . Atlas-SNP EHBP1L1 254102 hgsc.bcm.edu hg19 11 65357652 65357652 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . EHBP1L1 NM_001099409 exon15 c.A4154G p.E1385G AGGTGGAGATGCA . 90.0 5.0 53.0 0.0 . 64 . . Atlas-SNP OVOL1 5017 hgsc.bcm.edu hg19 11 65561586 65561586 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OVOL1 NM_004561 exon2 c.A185G p.N62S CTTTGAACATGAG . 92.0 4.0 81.0 0.0 . 15 . . Atlas-SNP KDM2A 22992 hgsc.bcm.edu hg19 11 66982895 66982895 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KDM2A NM_012308 exon7 c.A571T p.M191L TTGGAGATGCAGT . 81.0 18.0 66.0 0.0 . 80 . . Atlas-SNP MTL5 9633 hgsc.bcm.edu hg19 11 68475846 68475846 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MTL5 NM_004923 exon10 c.A1457G p.E486G AATTCCTCCAGGA . 149.0 6.0 132.0 0.0 . 37 . . Atlas-SNP TENM4 26011 hgsc.bcm.edu hg19 11 78775891 78775891 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001098816 exon6 c.G385A p.V129M GACGCACGGGGTG . 48.0 12.0 45.0 0.0 . . . . Atlas-SNP CTSC 1075 hgsc.bcm.edu hg19 11 88070831 88070831 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 CTSC,NS,carcinoma,0,1 CTSC NM_148170 exon1 c.G10T p.G4W AGGGCCCAGCACC . 43.0 3.0 85.0 0.0 . 46 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92616495 92616495 + Silent SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FAT3 NM_001008781 exon23 c.C12873A p.A4291A CCCCGCCGTGTCA . 25.0 10.0 36.0 0.0 . 1822 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103027464 103027464 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DYNC2H1 NM_001377 exon26 c.A4092G p.E1364E AAAAGAACAGACA . 81.0 4.0 67.0 0.0 . 246 . . Atlas-SNP NCAM1 4684 hgsc.bcm.edu hg19 11 113085206 113085206 + Silent SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . NCAM1 NM_001242608 exon9 c.T1032A p.S344S GACTTCTACCCGG . 112.0 11.0 81.0 0.0 . 372 . . Atlas-SNP TECTA 7007 hgsc.bcm.edu hg19 11 121058616 121058616 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TECTA NM_005422 exon20 c.C6075T p.T2025T CGTCACCGTCTTT . 89.0 24.0 93.0 0.0 . 329 . . Atlas-SNP ACRV1 56 hgsc.bcm.edu hg19 11 125542541 125542541 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ACRV1 NM_001612 exon4 c.A745G p.T249A TCCTCGTTCCATG . 88.0 4.0 76.0 0.0 . 21 . . Atlas-SNP APLP2 334 hgsc.bcm.edu hg19 11 129991652 129991652 + Missense_Mutation SNP T T G rs1063201 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . APLP2 NM_001243299 exon5 c.T690G p.D230E GGAAGATGAAGAG . 150.0 9.0 111.0 0.0 . 71 . . Atlas-SNP OPCML 4978 hgsc.bcm.edu hg19 11 132527021 132527021 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OPCML NM_002545 exon2 c.A361T p.N121Y GATGATTGTCTGT . 243.0 54.0 175.0 0.0 . 166 . . Atlas-SNP CCDC77 84318 hgsc.bcm.edu hg19 12 520926 520926 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CCDC77 NM_032358 exon4 c.T52C p.S18P GTTGTCTCCAAAC . 77.0 4.0 56.0 0.0 . 35 . . Atlas-SNP B4GALNT3 283358 hgsc.bcm.edu hg19 12 653566 653566 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . B4GALNT3 NM_173593 exon4 c.T413C p.L138P AGCAGCTCAGGAG . 46.0 5.0 32.0 0.0 . 64 . . Atlas-SNP SLC38A1 81539 hgsc.bcm.edu hg19 12 46599923 46599923 + Missense_Mutation SNP C C T rs369346779 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 SLC38A1,colon,carcinoma,0,1 SLC38A1 NM_030674 exon9 c.G586A p.V196I CCAGAACGCGGCC . 39.0 2.0 34.0 0.0 . 58 . . Atlas-SNP SLC38A2 54407 hgsc.bcm.edu hg19 12 46756927 46756927 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SLC38A2 NM_018976 exon13 c.A1056G p.E352E AACATGTTCTACA . 75.0 4.0 64.0 0.0 . 36 . . Atlas-SNP LMBR1L 55716 hgsc.bcm.edu hg19 12 49500745 49500745 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LMBR1L NM_018113 exon2 c.A156G p.T52T AGTACCTGTGGTG . 119.0 5.0 97.0 0.0 . 61 . . Atlas-SNP FAIM2 23017 hgsc.bcm.edu hg19 12 50281167 50281167 + Splice_Site SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FAIM2 NM_012306 exon12 c.801+2T>A . ACACTCACCAATG . 47.0 10.0 32.0 0.0 . 32 . . Atlas-SNP AQP5 362 hgsc.bcm.edu hg19 12 50357929 50357929 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . AQP5 NM_001651 exon3 c.G583C p.V195L GCGGTGGTCATGA . 107.0 15.0 82.0 0.0 . 19 . . Atlas-SNP C12orf44 60673 hgsc.bcm.edu hg19 12 52470885 52470885 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . C12orf44 NM_001098673 exon4 c.T568C p.Y190H TACCTGTACAAGA . 97.0 4.0 72.0 0.0 . 14 . . Atlas-SNP ITGA7 3679 hgsc.bcm.edu hg19 12 56088716 56088716 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ITGA7 NM_001144996 exon15 c.G2054A p.G685E GGCTGCCCACTCA . 61.0 6.0 49.0 0.0 . 194 . . Atlas-SNP ORMDL2 29095 hgsc.bcm.edu hg19 12 56212815 56212815 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ORMDL2 NM_014182 exon2 c.A32G p.N11S AAGTAAACCCCAA . 81.0 4.0 81.0 0.0 . 8 . . Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57577928 57577928 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LRP1 NM_002332 exon37 c.C5990T p.S1997F ATGGCTCCTTCCG . 104.0 12.0 74.0 0.0 . 428 . . Atlas-SNP GLIPR1L2 144321 hgsc.bcm.edu hg19 12 75816822 75816822 + Silent SNP A A G rs75261424 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GLIPR1L2 NM_152436 exon4 c.A723G p.K241K CAAGAAAAATAAG . 90.0 5.0 109.0 0.0 . 54 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 81014071 81014071 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PTPRQ NM_001145026 exon29 c.T5012A p.I1671N TCTACATCATAGG . 177.0 35.0 165.0 0.0 . 119 . . Atlas-SNP USP30 84749 hgsc.bcm.edu hg19 12 109519740 109519740 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . USP30 NM_032663 exon9 c.T783C p.G261G GTAGGGTCACCCA . 155.0 7.0 94.0 0.0 . 48 . . Atlas-SNP NOS1 4842 hgsc.bcm.edu hg19 12 117726019 117726019 + Silent SNP C C A rs368611180 alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 NOS1,NS,carcinoma,0,1 NOS1 NM_000620 exon5 c.G987T p.T329T GCATCCCGTTTCC . 44.0 2.0 35.0 0.0 . 240 . . Atlas-SNP XPO4 64328 hgsc.bcm.edu hg19 13 21375110 21375110 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . XPO4 NM_022459 exon14 c.A1837G p.R613G AAACTCTGAGAAT . 89.0 4.0 90.0 0.0 . 153 . . Atlas-SNP SKA3 221150 hgsc.bcm.edu hg19 13 21750551 21750551 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 SKA3,NS,carcinoma,0,1 SKA3 NM_145061 exon1 c.G66A p.T22T CCGGGCCGTCTCG . 16.0 2.0 22.0 0.0 . 76 . . Atlas-SNP EFHA1 221154 hgsc.bcm.edu hg19 13 22140947 22140947 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . EFHA1 NM_152726 exon2 c.A347G p.E116G ATTTGCTCAAACA . 80.0 4.0 57.0 0.0 . 33 . . Atlas-SNP BRCA2 675 hgsc.bcm.edu hg19 13 32937423 32937423 + Missense_Mutation SNP C C T rs80359048 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 BRCA2_ENST00000544455,NS,carcinoma,0,2 BRCA2 NM_000059 exon18 c.C8084T p.S2695L TAATTTCATTGAG . 124.0 5.0 98.0 0.0 . 812 . . Atlas-SNP LHFP 10186 hgsc.bcm.edu hg19 13 40175086 40175086 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 LHFP,NS,carcinoma,0,1 LHFP NM_005780 exon2 c.G268A p.G90S CCAGGCCGGTCAC . 71.0 3.0 56.0 0.0 . 31 . . Atlas-SNP PHF11 51131 hgsc.bcm.edu hg19 13 50080776 50080776 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PHF11 NM_001040443 exon2 c.T100C p.F34L GGTGTCTTTCAGG . 54.0 4.0 45.0 0.0 . 20 . . Atlas-SNP NEK3 4752 hgsc.bcm.edu hg19 13 52718058 52718058 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . NEK3 NM_002498 exon10 c.G869A p.R290K TTTTTTCTTGGTG . 112.0 6.0 80.0 0.0 . 41 . . Atlas-SNP GPC5 2262 hgsc.bcm.edu hg19 13 92380785 92380785 + Splice_Site SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 GPC5,NS,carcinoma,0,1 GPC5 NM_004466 exon4 c.1021-1G>T . TTAAAAGGTAAAT . 71.0 3.0 48.0 0.0 . 140 . . Atlas-SNP OR11G2 390439 hgsc.bcm.edu hg19 14 20666182 20666182 + Missense_Mutation SNP G G A rs77471263 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OR11G2 NM_001005503 exon1 c.G688A p.G230S AAAAAAGGCCCTG . 322.0 26.0 229.0 0.0 . 73 . . Atlas-SNP OR11G2 390439 hgsc.bcm.edu hg19 14 20666184 20666184 + Silent SNP C C G rs74538160 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . OR11G2 NM_001005503 exon1 c.C690G p.G230G AAAAGGCCCTGTG . 316.0 15.0 223.0 0.0 . 73 . . Atlas-SNP ARHGEF40 55701 hgsc.bcm.edu hg19 14 21555549 21555549 + Silent SNP G G A rs373398882 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ARHGEF40_ENST00000298694,NS,carcinoma,0,1 ARHGEF40 NM_018071 exon21 c.G4314A p.S1438S CCTTTCGCCGGGA . 14.0 2.0 18.0 1.0 . 84 . . Atlas-SNP ABHD4 63874 hgsc.bcm.edu hg19 14 23072501 23072501 + Nonsense_Mutation SNP C C T rs148116289 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ABHD4,colon,carcinoma,0,1 ABHD4 NM_022060 exon3 c.C319T p.R107X TTCGGGCGAAGCT . 87.0 4.0 53.0 0.0 . 30 . C|1.000;T|0.000 Atlas-SNP ACIN1 22985 hgsc.bcm.edu hg19 14 23548777 23548777 + Silent SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ACIN1 NM_001164814 exon6 c.A1941T p.S647S TGATGCTGAACGA . 240.0 15.0 148.0 0.0 . 147 . . Atlas-SNP ACIN1 22985 hgsc.bcm.edu hg19 14 23549875 23549875 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ACIN1 NM_001164814 exon6 c.A843T p.E281D ATCATCTTCTTCC . 210.0 10.0 141.0 0.0 . 147 . . Atlas-SNP ACIN1 22985 hgsc.bcm.edu hg19 14 23549881 23549881 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ACIN1 NM_001164814 exon6 c.G837A p.E279E TTCTTCCTCCTCC . 148.0 20.0 86.0 0.0 . 147 . . Atlas-SNP ACIN1 22985 hgsc.bcm.edu hg19 14 23549902 23549902 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ACIN1 NM_001164814 exon6 c.A816G p.E272E CTCTTCTTCCTCC . 182.0 11.0 118.0 0.0 . 147 . . Atlas-SNP PPP2R3C 55012 hgsc.bcm.edu hg19 14 35577440 35577440 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PPP2R3C NM_017917 exon5 c.A407T p.Q136L AAAAATTGCCTAA . 102.0 17.0 53.0 0.0 . 44 . . Atlas-SNP MAP4K5 11183 hgsc.bcm.edu hg19 14 50923302 50923302 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MAP4K5 NM_006575 exon14 c.T947C p.I316T CGAATGATTGCAT . 127.0 7.0 64.0 0.0 . 48 . . Atlas-SNP WDHD1 11169 hgsc.bcm.edu hg19 14 55467661 55467661 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . WDHD1 NM_007086 exon9 c.G743A p.G248D ATACTACCTGCAG . 306.0 128.0 207.0 0.0 . 82 . . Atlas-SNP SNAPC1 6617 hgsc.bcm.edu hg19 14 62233751 62233751 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SNAPC1 NM_003082 exon2 c.A286G p.K96E AAACAAAAGGTAA . 86.0 4.0 97.0 0.0 . 32 . . Atlas-SNP NEK9 91754 hgsc.bcm.edu hg19 14 75590877 75590877 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . NEK9 NM_033116 exon2 c.A269G p.E90G TCCTTCTCAGACA . 133.0 6.0 125.0 0.0 . 64 . . Atlas-SNP DICER1 23405 hgsc.bcm.edu hg19 14 95556981 95556981 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DICER1 NM_030621 exon28 c.G5623A p.D1875N TCCCGTCGTAAGT . 326.0 118.0 211.0 0.0 . 181 . . Atlas-SNP ZNF839 55778 hgsc.bcm.edu hg19 14 102798159 102798159 + Silent SNP G G A rs368513189 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ZNF839,NS,carcinoma,0,1 ZNF839 NM_018335 exon3 c.G1392A p.S464S GGCGTCGCCAAGC . 38.0 3.0 24.0 0.0 . 41 . . Atlas-SNP CEP170B 283638 hgsc.bcm.edu hg19 14 105360106 105360106 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 KIAA0284_ENST00000414716,NS,carcinoma,0,2 . NM_001112726 exon16 c.C4191T p.F1397F GATCTTCGATAAC . 45.0 3.0 24.0 0.0 . . . . Atlas-SNP GPR132 29933 hgsc.bcm.edu hg19 14 105517686 105517686 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GPR132 NM_013345 exon4 c.T788A p.L263H TTGACGAGGAGAA . 193.0 41.0 59.0 0.0 . 40 . . Atlas-SNP BTBD6 90135 hgsc.bcm.edu hg19 14 105716119 105716119 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . BTBD6 NM_033271 exon5 c.G568A p.V190I GCCTGCGTCCTGC . 99.0 31.0 50.0 0.0 . 24 . . Atlas-SNP OCA2 4948 hgsc.bcm.edu hg19 15 28230328 28230328 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 OCA2,NS,carcinoma,0,1 OCA2 NM_000275 exon13 c.C1246T p.R416W AGAGCCGGTATGC . 40.0 3.0 50.0 0.0 . 173 . . Atlas-SNP TMEM87A 25963 hgsc.bcm.edu hg19 15 42556385 42556385 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TMEM87A NM_001110503 exon4 c.T308G p.L103W AAATACAACTCTA . 220.0 69.0 211.0 0.0 . 56 . . Atlas-SNP ZNF609 23060 hgsc.bcm.edu hg19 15 64967011 64967011 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF609 NM_015042 exon4 c.T1958A p.L653Q AGAGCCTAAAGTC . 107.0 5.0 90.0 0.0 . 106 . . Atlas-SNP TMC3 342125 hgsc.bcm.edu hg19 15 81625157 81625157 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TMC3 NM_001080532 exon22 c.C2906A p.A969D TGAGGAGCCCGAC . 72.0 18.0 47.0 0.0 . 112 . . Atlas-SNP RAB40C 57799 hgsc.bcm.edu hg19 16 675504 675504 + Missense_Mutation SNP G G A rs141847125 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 RAB40C,NS,carcinoma,0,1 RAB40C NM_021168 exon4 c.G337A p.D113N GAGATCGATGAGG . 40.0 2.0 40.0 0.0 . 32 . G|1.000;A|0.000 Atlas-SNP XYLT1 64131 hgsc.bcm.edu hg19 16 17211760 17211760 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . XYLT1 NM_022166 exon11 c.T2300C p.V767A ATACCCACCGGCT . 144.0 7.0 154.0 0.0 . 147 . . Atlas-SNP ARHGAP17 55114 hgsc.bcm.edu hg19 16 24955110 24955110 + Missense_Mutation SNP C C T rs149340407 alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ARHGAP17_ENST00000289968,NS,carcinoma,0,2 ARHGAP17 NM_001006634 exon15 c.G1315A p.D439N ACCAGTCGGCATG . 74.0 5.0 89.0 1.0 . 138 . C|1.000;A|0.000 Atlas-SNP SULT1A2 6799 hgsc.bcm.edu hg19 16 28606943 28606943 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SULT1A2 NM_001054 exon3 c.G202A p.E68K ACTTTTCCAGGTC . 121.0 47.0 99.0 0.0 . 27 . . Atlas-SNP SPNS1 83985 hgsc.bcm.edu hg19 16 28986619 28986619 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 SPNS1,NS,carcinoma,0,1 SPNS1 NM_001142451 exon1 c.C147T p.R49R GCAGCGCATCACC . 46.0 2.0 42.0 0.0 . 47 . . Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30750366 30750366 + Missense_Mutation SNP C C G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SRCAP NM_006662 exon34 c.C9005G p.P3002R CGTCCCCACCCAA . 84.0 6.0 54.0 0.0 . 298 . . Atlas-SNP RLTPR 146206 hgsc.bcm.edu hg19 16 67686234 67686234 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . RLTPR NM_001013838 exon27 c.A2809G p.K937E GAGGAGAAGGAGA . 10.0 4.0 15.0 0.0 . 124 . . Atlas-SNP EDC4 23644 hgsc.bcm.edu hg19 16 67912905 67912905 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 EDC4,colon,carcinoma,0,1 EDC4 NM_014329 exon12 c.G1333A p.A445T GGCCACGCCTGCT . 60.0 3.0 31.0 0.0 . 101 . . Atlas-SNP CTRL 1506 hgsc.bcm.edu hg19 16 67964673 67964673 + Nonsense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CTRL NM_001907 exon4 c.C274T p.R92X ATGATCGGTCATA . 80.0 4.0 86.0 0.0 . 11 . . Atlas-SNP COG4 25839 hgsc.bcm.edu hg19 16 70543864 70543864 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 COG4,colon,carcinoma,0,1 COG4 NM_015386 exon6 c.A799G p.R267G CAGCTCTCCGATC . 66.0 3.0 83.0 0.0 . 64 . . Atlas-SNP MON1B 22879 hgsc.bcm.edu hg19 16 77227419 77227419 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 MON1B,colon,carcinoma,0,1 MON1B NM_014940 exon3 c.C220T p.R74W ACCTCTCGGCTCT . 44.0 3.0 54.0 0.0 . 55 . . Atlas-SNP SENP3 26168 hgsc.bcm.edu hg19 17 7470288 7470288 + Missense_Mutation SNP A A G rs76586164 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SENP3 NM_015670 exon8 c.A1307G p.K436R TACCAAAGGGTTA . 155.0 14.0 178.0 0.0 . 18 . A|0.500;G|0.500 Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578478 7578478 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 TP53_ENST00000545858,NS,adenocarcinoma,-1,2 TP53 NM_000546 exon5 c.C452A p.P151H GGCGGGGGTGTGG . 68.0 17.0 61.0 0.0 . 33396 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7674169 7674169 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DNAH2 NM_020877 exon26 c.A4280G p.D1427G ATGTGGACCACTG . 122.0 6.0 113.0 0.0 . 498 . . Atlas-SNP MYH10 4628 hgsc.bcm.edu hg19 17 8480586 8480586 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MYH10 NM_005964 exon5 c.T601C p.S201P TATGTGAAGAAGC . 87.0 4.0 89.0 0.0 . 148 . . Atlas-SNP KIAA0100 9703 hgsc.bcm.edu hg19 17 26961982 26961982 + Nonsense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 KIAA0100,right_upper_lobe,carcinoma,0,1 KIAA0100 NM_014680 exon16 c.G2623T p.E875X AGTGCTCAACCTT . 89.0 4.0 71.0 1.0 . 175 . . Atlas-SNP NSRP1 84081 hgsc.bcm.edu hg19 17 28499575 28499575 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . NSRP1 NM_032141 exon3 c.A130G p.S44G AGTGAAAGCCTTC . 96.0 4.0 65.0 0.0 . 49 . . Atlas-SNP MYO19 80179 hgsc.bcm.edu hg19 17 34856750 34856750 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 MYO19_ENST00000431794,NS,carcinoma,0,2 MYO19 NM_001163735 exon24 c.G2297A p.R766H ATGCAGCGGGCAC . 44.0 2.0 67.0 1.0 . 130 . . Atlas-SNP CACNB1 782 hgsc.bcm.edu hg19 17 37341067 37341067 + Silent SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CACNB1 NM_199247 exon8 c.C834A p.I278I CACCAGGATGATG . 131.0 23.0 89.0 0.0 . 89 . . Atlas-SNP KRTAP29-1 100533177 hgsc.bcm.edu hg19 17 39459053 39459053 + Silent SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KRTAP29-1 NM_001257309 exon1 c.C51T p.P17P GATGGTGGGCACA . 58.0 13.0 57.0 0.0 . 2 . . Atlas-SNP KANSL1 284058 hgsc.bcm.edu hg19 17 44249469 44249469 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 KIAA1267,NS,neuroblastoma,0,1 . NM_001193466 exon2 c.A41G p.E14G TGTGCTTCAGCTG . 65.0 3.0 32.0 1.0 . . . . Atlas-SNP CDC27 996 hgsc.bcm.edu hg19 17 45232068 45232068 + Silent SNP A A G rs74710570 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CDC27 NM_001114091 exon8 c.T927C p.D309D TGGCACATCAATT . 101.0 5.0 50.0 0.0 . 337 . . Atlas-SNP LRRC46 90506 hgsc.bcm.edu hg19 17 45914305 45914305 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . LRRC46 NM_033413 exon8 c.C785T p.P262L CAGTCCCTGAGGC . 114.0 6.0 86.0 0.0 . 25 . . Atlas-SNP EME1 146956 hgsc.bcm.edu hg19 17 48452982 48452982 + Missense_Mutation SNP C C A rs75511911 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . EME1 NM_152463 exon2 c.C413A p.P138H AAAAGCCCTTTCC . 172.0 8.0 129.0 0.0 . 39 . . Atlas-SNP MYCBPAP 84073 hgsc.bcm.edu hg19 17 48603556 48603556 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MYCBPAP NM_032133 exon14 c.C2226T p.S742S GGACAGCACCAAG . 65.0 22.0 55.0 0.0 . 135 . . Atlas-SNP SCN4A 6329 hgsc.bcm.edu hg19 17 62045610 62045610 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SCN4A NM_000334 exon6 c.A809G p.Q270R AAGAGCTGCAGTC . 186.0 8.0 143.0 0.0 . 205 . . Atlas-SNP ARSG 22901 hgsc.bcm.edu hg19 17 66352820 66352820 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ARSG NM_001267727 exon6 c.A579G p.R193R TCAAAGAGACTGT . 111.0 5.0 81.0 0.0 . 55 . . Atlas-SNP FAM20A 54757 hgsc.bcm.edu hg19 17 66538299 66538299 + Silent SNP G G A rs367996001 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 FAM20A,NS,carcinoma,0,1 FAM20A NM_017565 exon7 c.C936T p.N312N GCACACGTTGCTC . 48.0 2.0 37.0 0.0 . 35 . . Atlas-SNP ABCA10 10349 hgsc.bcm.edu hg19 17 67190119 67190119 + Missense_Mutation SNP T T A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 .,1 ABCA10 NM_080282 exon14 c.A1357T p.I453F TATAAATAGTGGC . 18.0 9.0 0.0 0.0 . 209 . . Atlas-SNP KIF19 124602 hgsc.bcm.edu hg19 17 72348385 72348385 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KIF19 NM_153209 exon14 c.T1886C p.L629P AGCGCCTGGAAGA . 51.0 4.0 76.0 0.0 . 102 . . Atlas-SNP FBF1 85302 hgsc.bcm.edu hg19 17 73915902 73915902 + Missense_Mutation SNP C C T rs374900201 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FBF1 NM_001080542 exon19 c.G1940A p.R647Q TCTCTCCGGAGCC . 86.0 4.0 74.0 0.0 . 48 . . Atlas-SNP TEN1 100134934 hgsc.bcm.edu hg19 17 73996268 73996268 + Silent SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TEN1 NM_001113324 exon4 c.G297T p.G99G GGAGGGGATGAAC . 67.0 18.0 46.0 0.0 . 4 . . Atlas-SNP ENPP7 339221 hgsc.bcm.edu hg19 17 77704969 77704969 + Missense_Mutation SNP C C T rs193920826 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ENPP7,NS,adenoma,0,1 ENPP7 NM_178543 exon1 c.C68T p.P23L GAGCACCGGTACA . 42.0 3.0 45.0 0.0 . 63 . . Atlas-SNP B3GNTL1 146712 hgsc.bcm.edu hg19 17 80972391 80972391 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . B3GNTL1 NM_001009905 exon5 c.A347G p.D116G ATGACGTCATCCT . 118.0 5.0 73.0 0.0 . 40 . . Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 8384641 8384641 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PTPRM NM_001105244 exon30 c.A4001G p.E1334G TGGAAGAGGACAT . 128.0 6.0 94.0 0.0 . 185 . . Atlas-SNP SOGA2 23255 hgsc.bcm.edu hg19 18 8813094 8813094 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_015210 exon12 c.G2722C p.V908L AGCCTGGTCATGG . 156.0 14.0 135.0 0.0 . . . . Atlas-SNP FHOD3 80206 hgsc.bcm.edu hg19 18 34298575 34298575 + Missense_Mutation SNP G G A rs369061380 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 FHOD3,colon,carcinoma,0,1 FHOD3 NM_025135 exon16 c.G2789A p.R930H ACCGACGCTGCAG . 67.0 3.0 68.0 0.0 . 210 . . Atlas-SNP SMAD2 4087 hgsc.bcm.edu hg19 18 45375012 45375012 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SMAD2 NM_005901 exon8 c.A831G p.I277M ATATGCTATCGAA . 73.0 4.0 88.0 0.0 . 85 . . Atlas-SNP LPPR3 0 hgsc.bcm.edu hg19 19 814544 814544 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_024888 exon6 c.T805C p.F269L TGGCAAAGGCGAA . 32.0 4.0 32.0 0.0 . . . . Atlas-SNP STXBP2 6813 hgsc.bcm.edu hg19 19 7707395 7707395 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 STXBP2,colon,carcinoma,0,1 STXBP2 NM_001272034 exon10 c.G908A p.R303H AGCTTCGCCACAT . 91.0 4.0 70.0 0.0 . 63 . . Atlas-SNP ZNF317 57693 hgsc.bcm.edu hg19 19 9271064 9271064 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF317 NM_020933 exon7 c.A743G p.K248R GGGAGAAGCCTTA . 93.0 4.0 56.0 0.0 . 61 . . Atlas-SNP CALR 811 hgsc.bcm.edu hg19 19 13054664 13054664 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CALR NM_004343 exon9 c.T1191C p.D397D GGAGGATGAGGAG . 136.0 9.0 127.0 0.0 . 31 . . Atlas-SNP PIK3R2 5296 hgsc.bcm.edu hg19 19 18266738 18266738 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PIK3R2 NM_005027 exon2 c.C49T p.R17W TTCCGCCGGGAGC . 16.0 7.0 17.0 0.0 . 48 . . Atlas-SNP ZNF714 148206 hgsc.bcm.edu hg19 19 21299777 21299777 + Missense_Mutation SNP G G A rs111443257 bycluster TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF714 NM_182515 exon5 c.G307A p.E103K GGTTATGAACTAA . 304.0 18.0 205.0 0.0 . 121 . . Atlas-SNP ZNF429 353088 hgsc.bcm.edu hg19 19 21720474 21720474 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF429 NM_001001415 exon4 c.A1619T p.E540V AATGTGAAGAATG . 42.0 10.0 32.0 0.0 . 338 . . Atlas-SNP ZNF726 730087 hgsc.bcm.edu hg19 19 24115505 24115505 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001244038 exon4 c.C587T p.T196I TATATACTACAGA . 46.0 12.0 46.0 0.0 . . . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 30934614 30934614 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ZNF536,rectum,carcinoma,0,2 ZNF536 NM_014717 exon2 c.G145A p.E49K TTCCCCGAGCTCC . 47.0 2.0 58.0 0.0 . 424 . . Atlas-SNP ZNF507 22847 hgsc.bcm.edu hg19 19 32873386 32873386 + Missense_Mutation SNP G G C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF507 NM_001136156 exon6 c.G2374C p.G792R CTGTGTGGGTATG . 196.0 37.0 178.0 0.0 . 92 . . Atlas-SNP ZNF793 390927 hgsc.bcm.edu hg19 19 38023312 38023312 + Missense_Mutation SNP C C T rs201422659 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ZNF793_ENST00000445217,colon,carcinoma,0,1 ZNF793 NM_001013659 exon6 c.C70T p.R24W TGGCACCGGCTGA . 93.0 5.0 83.0 1.0 . 50 . . Atlas-SNP ZC3H4 23211 hgsc.bcm.edu hg19 19 47575245 47575245 + Missense_Mutation SNP C C G rs381976 bycluster;byhapmap TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZC3H4 NM_015168 exon13 c.G1936C p.A646P TGTCTGCGTGCAT . 67.0 15.0 52.0 0.0 . 96 . C|1.000;|0.000 Atlas-SNP ZC3H4 23211 hgsc.bcm.edu hg19 19 47575267 47575267 + Silent SNP C C G rs200656728 bycluster;by1000genomes;alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZC3H4 NM_015168 exon13 c.G1914C p.P638P CATGTCCGGGTGC . 65.0 6.0 56.0 0.0 . 96 . C|1.000;A|0.000 Atlas-SNP EHD2 30846 hgsc.bcm.edu hg19 19 48244338 48244338 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 EHD2,NS,carcinoma,0,1 EHD2 NM_014601 exon6 c.T1281C p.P427P GGGACCTGACGAG . 16.0 2.0 28.0 0.0 . 59 . . Atlas-SNP SPACA4 171169 hgsc.bcm.edu hg19 19 49110448 49110448 + Silent SNP C C T rs371143349 TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 SPACA4,NS,carcinoma,0,2 SPACA4 NM_133498 exon1 c.C213T p.C71C CAGCTGCGGCCTT . 40.0 2.0 49.0 1.0 . 9 . . Atlas-SNP ALDH16A1 126133 hgsc.bcm.edu hg19 19 49965915 49965915 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ALDH16A1,bladder,carcinoma,0,2 ALDH16A1 NM_153329 exon8 c.G1001A p.R334Q GTGGCCGAGGGCT . 39.0 2.0 67.0 0.0 . 54 . . Atlas-SNP SIGLECL1 284369 hgsc.bcm.edu hg19 19 51770669 51770669 + Silent SNP G G T rs369648100 alternate_allele TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 C19orf75,rectum,carcinoma,0,1 . NM_173635 exon5 c.G453T p.A151A TGCAGCGATCAGA . 64.0 3.0 44.0 0.0 . . . . Atlas-SNP ZNF816 125893 hgsc.bcm.edu hg19 19 53453990 53453990 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF816 NM_001202457 exon4 c.T1038C p.C346C CTTGCCACACTCA . 109.0 5.0 82.0 0.0 . 73 . . Atlas-SNP PEG3 5178 hgsc.bcm.edu hg19 19 57334962 57334962 + Silent SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PEG3 NM_001146184 exon4 c.C480T p.F160F ACCACTGAAAGAA . 70.0 15.0 47.0 0.0 . 414 . . Atlas-SNP ZNF814 730051 hgsc.bcm.edu hg19 19 58385536 58385536 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF814 NM_001144989 exon3 c.T1222C p.Y408H ATTCATAATGTTT . 201.0 12.0 118.0 0.0 . 93 . . Atlas-SNP DOK5 55816 hgsc.bcm.edu hg19 20 53226977 53226977 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . DOK5 NM_018431 exon6 c.A650C p.E217A ACGGGGAGGCCAT . 171.0 20.0 143.0 0.0 . 54 . . Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57767832 57767832 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ZNF831,NS,carcinoma,0,2 ZNF831 NM_178457 exon1 c.C1758T p.D586D CACAGACGCAAAG . 34.0 2.0 36.0 0.0 . 287 . . Atlas-SNP PCMTD2 55251 hgsc.bcm.edu hg19 20 62904798 62904798 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PCMTD2 NM_018257 exon6 c.T931C p.C311R AACAGCTGTGAAG . 59.0 4.0 43.0 0.0 . 35 . . Atlas-SNP ADAMTS1 9510 hgsc.bcm.edu hg19 21 28212774 28212774 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ADAMTS1 NM_006988 exon5 c.T1486C p.S496P GTTTGGAGTCCTC . 70.0 4.0 64.0 0.0 . 131 . . Atlas-SNP LTN1 26046 hgsc.bcm.edu hg19 21 30339226 30339226 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 LTN1,colon,carcinoma,0,1 LTN1 NM_015565 exon10 c.G1725A p.L575L TGACTTCAATGAG . 110.0 5.0 104.0 0.0 . 141 . . Atlas-SNP SYNJ1 8867 hgsc.bcm.edu hg19 21 34003927 34003927 + Nonsense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SYNJ1 NM_003895 exon32 c.T4217A p.L1406X GAACTCAAAACAT . 135.0 8.0 124.0 0.0 . 253 . . Atlas-SNP KCNJ15 3772 hgsc.bcm.edu hg19 21 39671581 39671581 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 KCNJ15,NS,carcinoma,0,1 KCNJ15 NM_002243 exon4 c.G398A p.C133Y GAGTCCGTTCCAT . 100.0 4.0 92.0 0.0 . 43 . . Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 42064802 42064802 + Missense_Mutation SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 .,1 DSCAM NM_001271534 exon3 c.C442A p.P148T AGGAGGGGATAAT . 52.0 3.0 52.0 0.0 . 347 . . Atlas-SNP TRAPPC10 7109 hgsc.bcm.edu hg19 21 45523364 45523364 + Silent SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TRAPPC10 NM_003274 exon23 c.G3732A p.L1244L AGTCCTGGTCATC . 58.0 4.0 106.0 0.0 . 109 . . Atlas-SNP FAM207A 85395 hgsc.bcm.edu hg19 21 46380029 46380029 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_058190 exon3 c.A298G p.T100A GCCAAGACCGTTT . 62.0 4.0 69.0 0.0 . . . . Atlas-SNP MCM3AP 8888 hgsc.bcm.edu hg19 21 47676785 47676785 + Nonsense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 MCM3AP,NS,carcinoma,0,1 MCM3AP NM_003906 exon17 c.G3850T p.E1284X GGCACTCTGCGCT . 31.0 2.0 79.0 0.0 . 146 . . Atlas-SNP SNAP29 9342 hgsc.bcm.edu hg19 22 21235343 21235343 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SNAP29 NM_004782 exon3 c.A441G p.K147K ATTGAAAGAAGCT . 84.0 4.0 101.0 0.0 . 22 . . Atlas-SNP MMP11 4320 hgsc.bcm.edu hg19 22 24124435 24124435 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 MMP11,NS,carcinoma,0,1 MMP11 NM_005940 exon7 c.C1098T p.D366D GTACGACGGTGAA . 39.0 2.0 39.0 0.0 . 53 . . Atlas-SNP SMARCB1 6598 hgsc.bcm.edu hg19 22 24175869 24175869 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 SMARCB1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 SMARCB1 NM_003073 exon8 c.G1097A p.R366H AGATCCGCGACCA . 33.0 2.0 38.0 0.0 . 586 . . Atlas-SNP GGT1 2678 hgsc.bcm.edu hg19 22 25023537 25023537 + Missense_Mutation SNP G G A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 GGT1,NS,carcinoma,0,1 GGT1 NM_013430 exon12 c.G1159A p.V387I TCTGTCGTCGCAG . 43.0 2.0 52.0 0.0 . 68 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26164267 26164267 + Silent SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MYO18B NM_032608 exon4 c.C384A p.A128A GAAGGCCCAGGAG . 89.0 5.0 89.0 0.0 . 322 . . Atlas-SNP CRYBA4 1413 hgsc.bcm.edu hg19 22 27026346 27026346 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CRYBA4 NM_001886 exon6 c.T486C p.Y162Y TCAGTATGTGCTG . 89.0 4.0 98.0 0.0 . 33 . . Atlas-SNP HMGXB4 10042 hgsc.bcm.edu hg19 22 35660647 35660647 + Missense_Mutation SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 HMGXB4,NS,carcinoma,0,1 HMGXB4 NM_001003681 exon5 c.C266T p.S89L ATATTTCGTCTTT . 42.0 2.0 50.0 0.0 . 52 . . Atlas-SNP CELSR1 9620 hgsc.bcm.edu hg19 22 46794440 46794440 + Missense_Mutation SNP C C A novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CELSR1 NM_014246 exon11 c.G5507T p.G1836V CGGAATCCACGGC . 71.0 22.0 97.0 0.0 . 242 . . Atlas-SNP PLCXD1 55344 hgsc.bcm.edu hg19 X 215776 215776 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . PLCXD1 NM_018390 exon7 c.T746C p.V249A TGTTCGTGGCCGG . 76.0 4.0 123.0 0.0 . 18 . . Atlas-SNP MXRA5 25878 hgsc.bcm.edu hg19 X 3241431 3241431 + Missense_Mutation SNP A A T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . MXRA5 NM_015419 exon5 c.T2295A p.F765L AGATTCAAACACT . 210.0 81.0 280.0 0.0 . 815 . . Atlas-SNP SUPT20HL2 170067 hgsc.bcm.edu hg19 X 24329896 24329896 + Missense_Mutation SNP C C G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001136233 exon1 c.G1537C p.A513P GAGCAGCAGCAGG . 177.0 25.0 177.0 0.0 . . . . Atlas-SNP KCND1 3750 hgsc.bcm.edu hg19 X 48823420 48823420 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . KCND1 NM_004979 exon2 c.A1215G p.P405P AATGACTGGCACA . 88.0 6.0 82.0 0.0 . 63 . . Atlas-SNP TAF1 6872 hgsc.bcm.edu hg19 X 70607151 70607151 + Missense_Mutation SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . TAF1 NM_004606 exon15 c.A2327G p.H776R ATCTTCATAAGAT . 235.0 86.0 256.0 0.0 . 439 . . Atlas-SNP GLA 2717 hgsc.bcm.edu hg19 X 100658874 100658874 + Silent SNP G G T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GLA NM_000169 exon2 c.C294A p.P98P TCTTTGGGGAGCC . 99.0 36.0 135.0 0.0 . 43 . . Atlas-SNP COL4A6 1288 hgsc.bcm.edu hg19 X 107418370 107418370 + Missense_Mutation SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . COL4A6 NM_001847 exon30 c.A2909G p.D970G CCTTTGTCTCCTT . 106.0 5.0 122.0 0.0 . 270 . . Atlas-SNP RBMXL3 139804 hgsc.bcm.edu hg19 X 114424946 114424946 + Silent SNP C C T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . RBMXL3 NM_001145346 exon1 c.C942T p.A314A CGCTGCCCCTGTG . 130.0 11.0 144.0 0.0 . 83 . . Atlas-SNP FATE1 89885 hgsc.bcm.edu hg19 X 150884642 150884642 + Silent SNP A A G novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . FATE1 NM_033085 exon1 c.A51G p.A17A CCTGGCAGAAGAA . 146.0 40.0 175.0 0.0 . 30 . . Atlas-SNP GABRQ 55879 hgsc.bcm.edu hg19 X 151815446 151815446 + Missense_Mutation SNP A A C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GABRQ NM_018558 exon4 c.A344C p.K115T CTTGGAAAGATTC . 149.0 61.0 179.0 0.0 . 131 . . Atlas-SNP L1CAM 3897 hgsc.bcm.edu hg19 X 153129904 153129904 + Silent SNP T T C novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . L1CAM NM_000425 exon24 c.A3195G p.P1065P ATACTGTGGCGAA . 97.0 4.0 80.0 0.0 . 189 . . Atlas-SNP GJB1 2705 hgsc.bcm.edu hg19 X 70445066 70445069 + RNA DEL TGTT TGTT - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 TGTT TGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GJB1 . . . . . . 118.0 42.0 123.0 0.0 . 21 . . Atlas-Indel,Pindel GRAMD1B 57476 hgsc.bcm.edu hg19 11 123489856 123489856 + Frame_Shift_Del DEL C C - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GRAMD1B NM_020716 exon19 c.2050delT p.S684fs . . 50.0 14.0 49.0 0.0 . 122 . . Atlas-Indel,Pindel HSPG2 3339 hgsc.bcm.edu hg19 1 22159859 22159872 + Frame_Shift_Del DEL AAGTAGGGCACCAC AAGTAGGGCACCAC - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 AAGTAGGGCACCAC AAGTAGGGCACCAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . HSPG2 NM_005529 exon80 c.10985_10998del p.3662_3666del . . 106.0 10.0 83.0 0.0 . 311 . . Atlas-Indel,Pindel CUL1 8454 hgsc.bcm.edu hg19 7 148456419 148456422 + Frame_Shift_Del DEL CTGT CTGT - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 CTGT CTGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . CUL1 NM_003592 exon5 c.506_509del p.169_170del . . 180.0 29.0 123.0 0.0 . 80 . . Atlas-Indel,Pindel BIRC6 57448 hgsc.bcm.edu hg19 2 32613893 32613893 + Frame_Shift_Del DEL A A - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . BIRC6 NM_016252 exon4 c.720delG p.K240fs . . 171.0 30.0 168.0 0.0 . 838 . . Atlas-Indel,Pindel ODF2 4957 hgsc.bcm.edu hg19 9 131256869 131256872 + Frame_Shift_Del DEL TGAG TGAG - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 TGAG TGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 ODF2_ENST00000372814,NS,carcinoma,0,3 ODF2 NM_153435 exon17 c.2024_2027del p.675_676del . . 102.0 22.0 63.0 0.0 . 227 . . Atlas-Indel,Pindel GPR132 29933 hgsc.bcm.edu hg19 14 105517685 105517686 + Frame_Shift_Ins INS - - T novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . GPR132 NM_013345 exon4 c.789_790insA p.L263fs . . 193.0 39.0 59.0 0.0 . 40 . . Atlas-INDEL SUPT20HL2 170067 hgsc.bcm.edu hg19 X 24329882 24329884 + In_Frame_Del DEL TAA TAA - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 TAA TAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . . NM_001136233 exon1 c.1550_1552del p.517_518del . . 162.0 10.0 170.0 0.0 . . . . Atlas-INDEL ZNF512B 57473 hgsc.bcm.edu hg19 20 62597492 62597583 + Frame_Shift_Del DEL GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT - novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . ZNF512B NM_020713 exon5 c.1012_1034del p.338_345del . . 121.0 11.0 0.0 0.0 . 72 . . Pindel SCFD1 23256 hgsc.bcm.edu hg19 14 31107344 31107345 + Frame_Shift_Ins INS - - ACTAT novel TCGA-BD-A3EP-01A-11D-A22F-10 TCGA-BD-A3EP-11A-12D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9cd66ad6-837c-48db-b3a9-ed3e2558eef5 631a4a75-d468-41a0-9bf7-693499a63901 . SCFD1 NM_016106 exon5 c.326_327insACTAT p.Q109fs . . 210.0 40.0 0.0 0.0 . 43 . . Pindel