Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
GNB1	2782	hgsc.bcm.edu	hg19	1	1721974	1721974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	GNB1	NM_002074	exon9	c.G559T	p.V187F	TCATGACATCTCC	.	124.0	44.0	87.0	0.0	.	39	.	.	Atlas-SNP
XKR8	55113	hgsc.bcm.edu	hg19	1	28293332	28293332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	XKR8	NM_018053	exon3	c.A809G	p.Y270C	TCCTCTATTTCTC	.	110.0	50.0	78.0	0.0	.	15	.	.	Atlas-SNP
CACHD1	57685	hgsc.bcm.edu	hg19	1	65147714	65147714	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	CACHD1,colon,carcinoma,0,1	CACHD1	NM_020925	exon26	c.G3358C	p.V1120L	GCTGCGGTCATCG	.	310.0	132.0	244.0	0.0	.	125	.	.	Atlas-SNP
APOA1BP	128240	hgsc.bcm.edu	hg19	1	156562201	156562201	+	Silent	SNP	G	G	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	APOA1BP	NM_144772	exon3	c.G336T	p.L112L	TGTCCTGGTCATC	.	105.0	64.0	46.0	0.0	.	16	.	.	Atlas-SNP
OLFML2B	25903	hgsc.bcm.edu	hg19	1	161989951	161989951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	OLFML2B	NM_015441	exon2	c.G196A	p.V66I	CCTTGACCTTGTC	.	92.0	38.0	58.0	0.0	.	114	.	.	Atlas-SNP
CPSF3	51692	hgsc.bcm.edu	hg19	2	9613123	9613123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	CPSF3	NM_016207	exon18	c.G2032A	p.E678K	CTGTACGAGGCCC	.	98.0	40.0	62.0	0.0	.	63	.	.	Atlas-SNP
KCNF1	3754	hgsc.bcm.edu	hg19	2	11052594	11052594	+	Silent	SNP	C	C	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	KCNF1,NS,carcinoma,0,1	KCNF1	NM_002236	exon1	c.C42T	p.S14S	GGGCAGCCAGAGC	.	38.0	18.0	25.0	0.0	.	70	.	.	Atlas-SNP
PFN4	375189	hgsc.bcm.edu	hg19	2	24342547	24342547	+	Silent	SNP	G	G	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	PFN4	NM_199346	exon4	c.C261T	p.N87N	ACCAGTGTTCTCC	.	39.0	16.0	41.0	0.0	.	16	.	.	Atlas-SNP
PLEKHH2	130271	hgsc.bcm.edu	hg19	2	43956801	43956801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	PLEKHH2	NM_172069	exon18	c.T2747C	p.V916A	TGACTGTTGCAGC	.	113.0	44.0	75.0	0.0	.	156	.	.	Atlas-SNP
DYTN	391475	hgsc.bcm.edu	hg19	2	207572184	207572184	+	Silent	SNP	A	A	G	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	DYTN	NM_001093730	exon3	c.T138C	p.R46R	ACTTGGACGCAGT	.	186.0	79.0	127.0	0.0	.	168	.	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	hg19	2	216299523	216299523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	FN1	NM_212476	exon2	c.A173G	p.H58R	TGATAGTGTTTTC	.	85.0	37.0	69.0	0.0	.	521	.	.	Atlas-SNP
RRP9	9136	hgsc.bcm.edu	hg19	3	51970364	51970364	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	RRP9	NM_004704	exon8	c.C644G	p.A215G	CCAGAGGCCTGCA	.	154.0	65.0	106.0	0.0	.	40	.	.	Atlas-SNP
MGLL	11343	hgsc.bcm.edu	hg19	3	127540605	127540605	+	Silent	SNP	G	G	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	MGLL,NS,carcinoma,0,1	MGLL	NM_007283	exon2	c.C87A	p.L29L	GTGAGGGAGGTCC	.	126.0	51.0	78.0	0.0	.	19	.	.	Atlas-SNP
SLC25A36	55186	hgsc.bcm.edu	hg19	3	140660913	140660913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	SLC25A36	NM_018155	exon1	c.C17T	p.T6M	GGGACACGCTGGT	.	178.0	89.0	128.0	0.0	.	24	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5624510	5624510	+	Missense_Mutation	SNP	C	C	T	rs139717271		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	EVC2,colon,carcinoma,-1,1	EVC2	NM_147127	exon14	c.G2255A	p.R752Q	AGGCGCCGCAGCT	.	143.0	61.0	116.0	0.0	.	202	.	C|1.000;T|0.000	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20535222	20535222	+	Silent	SNP	T	T	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	SLIT2	NM_004787	exon18	c.T1716C	p.D572D	CACAGATATTGAG	.	634.0	274.0	587.0	0.0	.	290	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85758098	85758098	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	WDFY3	NM_014991	exon7	c.A560T	p.Q187L	ACTTTCTGGAGTA	.	464.0	173.0	343.0	1.0	.	314	.	.	Atlas-SNP
GLRA3	8001	hgsc.bcm.edu	hg19	4	175636670	175636670	+	Silent	SNP	A	A	G	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	GLRA3	NM_001042543	exon5	c.T543C	p.D181D	TTGTACATCCATG	.	555.0	230.0	389.0	1.0	.	76	.	.	Atlas-SNP
SLC6A19	340024	hgsc.bcm.edu	hg19	5	1219158	1219158	+	Silent	SNP	C	C	T	rs141604151		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	SLC6A19	NM_001003841	exon9	c.C1314T	p.G438G	GGAGGGCGTCGTT	.	139.0	39.0	62.0	0.0	.	99	.	C|1.000;T|0.000	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37170312	37170312	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	C5orf42	NM_023073	exon33	c.C6293G	p.S2098X	AGGTTTGATTCTT	.	152.0	67.0	102.0	0.0	.	422	.	.	Atlas-SNP
RBM22	55696	hgsc.bcm.edu	hg19	5	150071321	150071321	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	RBM22	NM_018047	exon11	c.A1255C	p.S419R	AGGGGCTGCTGTG	.	79.0	27.0	57.0	0.0	.	33	.	.	Atlas-SNP
BOD1	91272	hgsc.bcm.edu	hg19	5	173036375	173036375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	BOD1	NM_138369	exon3	c.A425G	p.N142S	ATGTGGTTAAGTT	.	109.0	44.0	65.0	0.0	.	15	.	.	Atlas-SNP
HIST1H4C	8364	hgsc.bcm.edu	hg19	6	26104293	26104293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	HIST1H4C	NM_003542	exon1	c.C118G	p.R40G	TTGGCTCGGCGCG	.	146.0	7.0	96.0	0.0	.	14	.	.	Atlas-SNP
FAM83B	222584	hgsc.bcm.edu	hg19	6	54805688	54805688	+	Missense_Mutation	SNP	A	A	G	rs239798	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	FAM83B,NS,carcinoma,0,1	FAM83B	NM_001010872	exon5	c.A1919G	p.K640R	TATATAAAACCTT	.	266.0	113.0	218.0	1.0	.	186	.	A|0.690;C|0.310	Atlas-SNP
PRDM13	59336	hgsc.bcm.edu	hg19	6	100061789	100061789	+	Silent	SNP	G	G	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	PRDM13	NM_021620	exon4	c.G1278T	p.A426A	CCCTGCGCCGGGG	.	55.0	18.0	36.0	0.0	.	65	.	.	Atlas-SNP
NR2E1	7101	hgsc.bcm.edu	hg19	6	108502144	108502144	+	Silent	SNP	C	C	A	rs368041869	alternate_allele	TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	NR2E1,NS,carcinoma,0,1	NR2E1	NM_003269	exon7	c.C873A	p.I291I	ATGCATCGTCACT	.	154.0	70.0	112.0	0.0	.	57	.	.	Atlas-SNP
COL10A1	1300	hgsc.bcm.edu	hg19	6	116442516	116442516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	COL10A1	NM_000493	exon3	c.C763A	p.P255T	CCCCAGGAGGGCC	.	88.0	41.0	57.0	0.0	.	51	.	.	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	hg19	7	7421217	7421217	+	Silent	SNP	T	T	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	COL28A1	NM_001037763	exon28	c.A2163T	p.P721P	TGGGCCTGGGAAG	.	136.0	50.0	126.0	0.0	.	113	.	.	Atlas-SNP
GTF2I	2969	hgsc.bcm.edu	hg19	7	74114719	74114719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	GTF2I	NM_032999	exon5	c.G516T	p.W172C	GAAATGGATTTTG	.	252.0	116.0	168.0	0.0	.	40	.	.	Atlas-SNP
TUSC3	7991	hgsc.bcm.edu	hg19	8	15480625	15480625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	TUSC3	NM_178234	exon2	c.T175C	p.W59R	ATGGAATGGAGTT	.	64.0	47.0	79.0	0.0	.	98	.	.	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	hg19	8	139263216	139263216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	LOC51059,colon,carcinoma,0,2	FAM135B	NM_015912	exon6	c.C410A	p.T137K	CCAAGCGTTCGGC	.	130.0	56.0	104.0	0.0	.	423	.	.	Atlas-SNP
RMI1	80010	hgsc.bcm.edu	hg19	9	86616608	86616608	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	RMI1	NM_024945	exon3	c.T707G	p.L236R	ATGTTCTAGATCC	.	135.0	64.0	96.0	0.0	.	50	.	.	Atlas-SNP
RAD23B	5887	hgsc.bcm.edu	hg19	9	110091936	110091936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	RAD23B	NM_002874	exon10	c.G1229T	p.X410L	AAGATTGAAAGGG	.	51.0	22.0	45.0	0.0	.	31	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55849778	55849778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	PCDH15	NM_001142763	exon17	c.G1978T	p.G660X	GATCTCCATTCTC	.	106.0	43.0	86.0	0.0	.	1715	.	.	Atlas-SNP
SLC6A5	9152	hgsc.bcm.edu	hg19	11	20660007	20660007	+	Silent	SNP	T	T	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	SLC6A5	NM_004211	exon13	c.T1872C	p.G624G	TTAGGGTGGAATT	.	71.0	27.0	32.0	0.0	.	151	.	.	Atlas-SNP
PPFIA1	8500	hgsc.bcm.edu	hg19	11	70194365	70194365	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	PPFIA1	NM_177423	exon16	c.A2002C	p.S668R	AGTGGAAGTCTAG	.	105.0	44.0	98.0	0.0	.	114	.	.	Atlas-SNP
KIAA1377	57562	hgsc.bcm.edu	hg19	11	101849150	101849150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	KIAA1377	NM_020802	exon7	c.A2918G	p.N973S	GACAAAACCCTGG	.	163.0	8.0	184.0	0.0	.	111	.	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	hg19	11	121037416	121037416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	TECTA	NM_005422	exon17	c.C5513A	p.T1838N	AGTGCACCGGCAT	.	104.0	12.0	62.0	0.0	.	329	.	.	Atlas-SNP
VSIG2	23584	hgsc.bcm.edu	hg19	11	124618542	124618542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	VSIG2	NM_014312	exon5	c.C704G	p.T235S	CTACCGGTCACAG	.	94.0	43.0	71.0	0.0	.	38	.	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	hg19	12	122261155	122261155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	SETD1B	NM_015048	exon12	c.A4541T	p.Q1514L	AGCCACAGACCCC	.	96.0	34.0	88.0	0.0	.	105	.	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	hg19	14	52481919	52481919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	NID2	NM_007361	exon15	c.C3103T	p.R1035W	CATCCCGGGGGGT	.	145.0	64.0	106.0	0.0	.	201	.	.	Atlas-SNP
HCN4	10021	hgsc.bcm.edu	hg19	15	73635902	73635902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	HCN4	NM_005477	exon2	c.G1033T	p.D345Y	TGAAATCTACCAT	.	162.0	58.0	99.0	0.0	.	150	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99482513	99482513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	IGF1R	NM_000875	exon18	c.C3381A	p.N1127K	CCTCAACGCCAAT	.	167.0	75.0	99.0	0.0	.	147	.	.	Atlas-SNP
C17orf96	100170841	hgsc.bcm.edu	hg19	17	36830528	36830528	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	.	NM_001130677	exon1	c.A221T	p.Q74L	GGGGCCTGAGGGC	.	54.0	28.0	17.0	0.0	.	.	.	.	Atlas-SNP
CERS4	79603	hgsc.bcm.edu	hg19	19	8326959	8326959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	.	NM_024552	exon12	c.G1151A	p.G384E	TGGCCGGGCGTCT	.	66.0	32.0	63.0	0.0	.	.	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10610154	10610154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	KEAP1	NM_012289	exon2	c.G556A	p.G186S	CGATGCCGATGGC	.	42.0	31.0	55.0	0.0	.	182	.	.	Atlas-SNP
DOCK6	57572	hgsc.bcm.edu	hg19	19	11339628	11339628	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	DOCK6	NM_020812	exon23	c.C2802G	p.F934L	CTGGAAGAAGAAC	.	57.0	44.0	93.0	0.0	.	104	.	.	Atlas-SNP
MAST1	22983	hgsc.bcm.edu	hg19	19	12977547	12977547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	MAST1	NM_014975	exon18	c.T2110C	p.F704L	CGCCAGTTCTCTT	.	63.0	48.0	54.0	0.0	.	214	.	.	Atlas-SNP
CYP2A6	1548	hgsc.bcm.edu	hg19	19	41352896	41352896	+	Missense_Mutation	SNP	G	G	C	rs57677262	alternate_allele	TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	CYP2A6,NS,carcinoma,0,1	CYP2A6	NM_000762	exon5	c.C715G	p.Q239E	GCAACTGAAAGGC	.	130.0	49.0	116.0	0.0	.	69	.	.	Atlas-SNP
ZNF816	125893	hgsc.bcm.edu	hg19	19	53454513	53454513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	ZNF816	NM_001202457	exon4	c.C515A	p.T172N	CCTTTAGTCTGAA	.	107.0	47.0	110.0	0.0	.	73	.	.	Atlas-SNP
LILRA3	11026	hgsc.bcm.edu	hg19	19	54802753	54802753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	LILRA3	NM_006865	exon5	c.G688T	p.V230L	GCTGCACTGAGAG	.	102.0	86.0	88.0	0.0	.	65	.	.	Atlas-SNP
LILRA5	353514	hgsc.bcm.edu	hg19	19	54822850	54822850	+	Silent	SNP	G	G	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	LILRA5	NM_181879	exon5	c.C546T	p.S182S	GGTCCAGGAGAGC	.	157.0	82.0	98.0	0.0	.	49	.	.	Atlas-SNP
EPN1	29924	hgsc.bcm.edu	hg19	19	56196948	56196948	+	Missense_Mutation	SNP	C	C	T	rs369409343		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	EPN1	NM_001130071	exon4	c.C748T	p.R250W	GAGGACCGGCTGC	.	118.0	47.0	66.0	0.0	.	98	.	.	Atlas-SNP
MCM5	4174	hgsc.bcm.edu	hg19	22	35802596	35802596	+	Silent	SNP	C	C	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	MCM5	NM_006739	exon5	c.C474T	p.A158A	CGCGGCCTCTGCG	.	55.0	25.0	33.0	0.0	.	54	.	.	Atlas-SNP
MAOB	4129	hgsc.bcm.edu	hg19	X	43698229	43698229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	MAOB	NM_000898	exon3	c.A164T	p.D55V	CCAAGGTCCACAT	.	70.0	51.0	102.0	0.0	.	52	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13608	13608	+	Silent	SNP	T	T	C	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	.	ENST00000361567	exon1	c.T1272C	p.T424T	TAGCACTCGAATA	.	31.0	6.0	25.0	0.0	.	.	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33990117	33990117	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	RYR3	NM_001243996	exon40	c.6168delT	p.H2056fs	.	.	221.0	90.0	147.0	0.0	.	760	.	.	Atlas-Indel,Pindel
SYNPO2	171024	hgsc.bcm.edu	hg19	4	119951193	119951193	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	SYNPO2_ENST00000434046,NS,carcinoma,0,3	SYNPO2	NM_001128934	exon4	c.1262delC	p.A421fs	.	.	246.0	123.0	194.0	0.0	.	353	.	.	Atlas-Indel,Pindel
WDR36	134430	hgsc.bcm.edu	hg19	5	110445911	110445911	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	WDR36	NM_139281	exon13	c.1517delG	p.G506fs	.	.	97.0	40.0	94.0	0.0	.	111	.	.	Atlas-Indel,Pindel
ALB	213	hgsc.bcm.edu	hg19	4	74284021	74284024	+	Frame_Shift_Del	DEL	AAAC	AAAC	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	AAAC	AAAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	ALB	NM_000477	exon12	c.1644_1647del	p.548_549del	.	.	41.0	17.0	36.0	0.0	.	132	.	.	Atlas-Indel,Pindel
KIAA1377	57562	hgsc.bcm.edu	hg19	11	101833550	101833550	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	KIAA1377	NM_020802	exon6	c.1783delA	p.I595X	.	.	160.0	62.0	115.0	0.0	.	111	.	.	Atlas-Indel,Pindel
HECTD3	79654	hgsc.bcm.edu	hg19	1	45474271	45474271	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	HECTD3	NM_024602	exon8	c.1176delA	p.R392fs	.	.	118.0	39.0	80.0	0.0	.	158	.	.	Atlas-Indel,Pindel
UBE2D3	7323	hgsc.bcm.edu	hg19	4	103730836	103730837	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	UBE2D3	NM_181893	exon3	c.119_120insA	p.M40fs	.	.	615.0	120.0	489.0	0.0	.	25	.	.	Pindel
ADCY5	111	hgsc.bcm.edu	hg19	3	123003495	123003495	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	ADCY5	NM_183357	exon21	c.3747delG	p.M1249fs	.	.	81.0	27.0	51.0	0.0	.	169	.	.	Pindel
TYRO3	7301	hgsc.bcm.edu	hg19	15	41865504	41865699	+	Frame_Shift_Del	DEL	GTACGAATTCTGGAGGACTCGAGGGTGGGAGACAGCAGCAGGTGCCAAGAGGAGCTAGCTGATGGTCGGCTCCTGCCTGGGACAGTATCTGCTATGCATGGGGGTAGCTTGGGAGCAAAGATGCAAAGATGTCCTGGCTCTTGTGGGCCTGTGAGCATGGCAGAAGGCTGACTCTCTCCCTCAATGCCCCTTGTAG	GTACGAATTCTGGAGGACTCGAGGGTGGGAGACAGCAGCAGGTGCCAAGAGGAGCTAGCTGATGGTCGGCTCCTGCCTGGGACAGTATCTGCTATGCATGGGGGTAGCTTGGGAGCAAAGATGCAAAGATGTCCTGGCTCTTGTGGGCCTGTGAGCATGGCAGAAGGCTGACTCTCTCCCTCAATGCCCCTTGTAG	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	GTACGAATTCTGGAGGACTCGAGGGTGGGAGACAGCAGCAGGTGCCAAGAGGAGCTAGCTGATGGTCGGCTCCTGCCTGGGACAGTATCTGCTATGCATGGGGGTAGCTTGGGAGCAAAGATGCAAAGATGTCCTGGCTCTTGTGGGCCTGTGAGCATGGCAGAAGGCTGACTCTCTCCCTCAATGCCCCTTGTAG	GTACGAATTCTGGAGGACTCGAGGGTGGGAGACAGCAGCAGGTGCCAAGAGGAGCTAGCTGATGGTCGGCTCCTGCCTGGGACAGTATCTGCTATGCATGGGGGTAGCTTGGGAGCAAAGATGCAAAGATGTCCTGGCTCTTGTGGGCCTGTGAGCATGGCAGAAGGCTGACTCTCTCCCTCAATGCCCCTTGTAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	TYRO3	NM_006293	exon16	c.1985_1985del	p.662_662del	.	.	86.0	12.0	78.0	0.0	.	169	.	.	Pindel
FMN2	56776	hgsc.bcm.edu	hg19	1	240371023	240371055	+	In_Frame_Del	DEL	CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA	CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA	CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	FMN2	NM_020066	exon5	c.2910_2942del	p.970_981del	.	.	94.0	13.0	84.0	0.0	.	451	.	.	Pindel
TP53	7157	hgsc.bcm.edu	hg19	17	7577589	7577594	+	In_Frame_Del	DEL	GTGGTA	GTGGTA	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	GTGGTA	GTGGTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	TP53_ENST00000545858,colon,carcinoma,-1,16	TP53	NM_001126112	exon7	c.688_693del	p.230_231del	.	.	47.0	20.0	68.0	0.0	.	33396	.	.	Pindel
PDE5A	8654	hgsc.bcm.edu	hg19	4	120481478	120481478	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A8YO-01A-11D-A36X-10	TCGA-BC-A8YO-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	907824f7-f279-4739-823a-b02fe8e76822	fc2c7c4d-4ea8-465f-9c5f-cc21ac19a8ad	.	PDE5A	NM_001083	exon7	c.1173delA	p.L391fs	.	.	214.0	62.0	150.0	0.0	.	83	.	.	Pindel