Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm DMAP1 55929 hgsc.bcm.edu hg19 1 44684030 44684030 + Silent SNP C C T novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . DMAP1 NM_001034023 exon5 c.C441T p.L147L TTATCTCCACGAT . 143.0 38.0 306.0 0.0 . 35 . . Atlas-SNP SLC35A3 23443 hgsc.bcm.edu hg19 1 100483326 100483326 + Missense_Mutation SNP C C T novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 SLC35A3,bile_duct,carcinoma,0,1 SLC35A3 NM_001271685 exon7 c.C968T p.S323L TATTATCAACATT . 495.0 75.0 913.0 2.0 . 25 . . Atlas-SNP HIST2H3D 653604 hgsc.bcm.edu hg19 1 149784882 149784882 + Missense_Mutation SNP T T C novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 HIST2H3D,bile_duct,carcinoma,0,1 HIST2H3D NM_001123375 exon1 c.A355G p.T119A TGATGGTCACGCG . 209.0 62.0 277.0 1.0 . 15 . . Atlas-SNP WDR26 80232 hgsc.bcm.edu hg19 1 224585919 224585919 + Missense_Mutation SNP A A T novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 WDR26_ENST00000414423,bile_duct,carcinoma,0,2 WDR26 NM_025160 exon12 c.T1654A p.L552I CCCATAAATGAAC . 95.0 30.0 156.0 0.0 . 104 . . Atlas-SNP HK2 3099 hgsc.bcm.edu hg19 2 75104368 75104368 + Silent SNP G G A novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . HK2 NM_000189 exon8 c.G951A p.E317E GGAGGAGCTGCTC . 105.0 25.0 133.0 0.0 . 85 . . Atlas-SNP RANBP2 5903 hgsc.bcm.edu hg19 2 109380447 109380447 + Missense_Mutation SNP A A G novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 RANBP2_ENST00000283195,bile_duct,carcinoma,0,2 RANBP2 NM_006267 exon20 c.A3452G p.N1151S CAGCAAACAAGAA . 131.0 71.0 165.0 0.0 . 488 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179412302 179412302 + Missense_Mutation SNP A A G novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . TTN NM_001267550 exon339 c.T94051C p.S31351P TACCCGATTCACG . 166.0 31.0 246.0 0.0 . 18412 . . Atlas-SNP IDH1 3417 hgsc.bcm.edu hg19 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 bycluster TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 IDH1,NS,haematopoietic_neoplasm,0,788 IDH1 NM_005896 exon4 c.C394T p.R132C CATGACGACCTAT . 189.0 89.0 298.0 0.0 . 6310 . . Atlas-SNP CXCR7 57007 hgsc.bcm.edu hg19 2 237489915 237489915 + Silent SNP C C T novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . CXCR7 NM_020311 exon2 c.C807T p.H269H CTACCACGTGGCG . 111.0 23.0 141.0 0.0 . 72 . . Atlas-SNP RAF1 5894 hgsc.bcm.edu hg19 3 12645687 12645687 + Missense_Mutation SNP G G C novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 RAF1,bile_duct,carcinoma,0,1 RAF1 NM_002880 exon7 c.C782G p.P261R ACATTAGGTGTGG . 126.0 57.0 173.0 0.0 . 66 . . Atlas-SNP ECE2 9718 hgsc.bcm.edu hg19 3 184001717 184001717 + Missense_Mutation SNP G G A rs370460271 TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . ECE2 NM_014693 exon8 c.G1315A p.D439N CGGCGCGACGAGG . 164.0 30.0 168.0 0.0 . 303 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48315045 48315045 + Missense_Mutation SNP G G T novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . ABCA13 NM_152701 exon17 c.G5782T p.V1928F CCGTTTGTCCCAC . 222.0 106.0 280.0 0.0 . 1192 . . Atlas-SNP TPST1 8460 hgsc.bcm.edu hg19 7 65705902 65705902 + Missense_Mutation SNP C C G novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 TPST1,bile_duct,carcinoma,0,1 TPST1 NM_003596 exon2 c.C490G p.L164V TTTGCCCTGAAAT . 82.0 32.0 126.0 0.0 . 25 . . Atlas-SNP STEAP4 79689 hgsc.bcm.edu hg19 7 87912274 87912274 + Missense_Mutation SNP G G C rs370475892 bycluster;alternate_allele TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 STEAP4,colon,carcinoma,0,2 STEAP4 NM_001205315 exon4 c.C666G p.D222E GATTACGTCTCTT . 103.0 43.0 189.0 0.0 . 54 . . Atlas-SNP ARID5B 84159 hgsc.bcm.edu hg19 10 63817024 63817024 + Missense_Mutation SNP T T C novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . ARID5B NM_032199 exon6 c.T995C p.M332T AATACATGAAAGA . 72.0 52.0 166.0 0.0 . 125 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118373507 118373507 + Silent SNP G G A novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . MLL NM_001197104 exon27 c.G6900A p.V2300V CTTGGTGTCCAAG . 51.0 13.0 103.0 0.0 . 548 . . Atlas-SNP SNX19 399979 hgsc.bcm.edu hg19 11 130785772 130785772 + Silent SNP A A G novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . SNX19 NM_014758 exon1 c.T63C p.N21N CAGGTTATTGAGG . 53.0 11.0 108.0 0.0 . 84 . . Atlas-SNP C14orf37 145407 hgsc.bcm.edu hg19 14 58605153 58605153 + Silent SNP A A T novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . C14orf37 NM_001001872 exon2 c.T924A p.S308S TAAGGCAGAGGCA . 98.0 45.0 227.0 0.0 . 87 . . Atlas-SNP TRPV3 162514 hgsc.bcm.edu hg19 17 3417232 3417232 + Silent SNP T T C novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . TRPV3 NM_001258205 exon18 c.A2355G p.E785E CGGGAATTCCTCG . 217.0 71.0 314.0 1.0 . 85 . . Atlas-SNP ANKFY1 51479 hgsc.bcm.edu hg19 17 4082167 4082167 + Silent SNP G G A novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . ANKFY1 NM_001257999 exon18 c.C2709T p.S903S AGCCCCGGACTCT . 85.0 20.0 135.0 0.0 . 81 . . Atlas-SNP MYH2 4620 hgsc.bcm.edu hg19 17 10432777 10432777 + Nonsense_Mutation SNP C C A novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . MYH2 NM_017534 exon25 c.G3139T p.E1047X TCTTTTCTTGCTC . 136.0 15.0 246.0 0.0 . 390 . . Atlas-SNP TPM4 7171 hgsc.bcm.edu hg19 19 16186928 16186928 + Missense_Mutation SNP G G C novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . TPM4 NM_001145160 exon2 c.G186C p.E62D TTCCGAGGACCTG . 179.0 95.0 194.0 0.0 . 28 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 39010081 39010081 + Missense_Mutation SNP G G A novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . RYR1 NM_001042723 exon67 c.G10246A p.V3416M CGCTACGTGGACA . 46.0 17.0 62.0 0.0 . 708 . . Atlas-SNP ZNF578 147660 hgsc.bcm.edu hg19 19 53014251 53014251 + Missense_Mutation SNP A A C novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . . NM_001099694 exon6 c.A617C p.N206T CTCCTAATAACTA . 233.0 14.0 398.0 0.0 . . . . Atlas-SNP TARM1 441864 hgsc.bcm.edu hg19 19 54573362 54573362 + Silent SNP C C T novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . TARM1 NM_001135686 exon5 c.G711A p.L237L CAGACCCAGTCGT . 67.0 8.0 73.0 0.0 . 10 . . Atlas-SNP U2AF2 11338 hgsc.bcm.edu hg19 19 56185355 56185355 + Missense_Mutation SNP C C T novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 U2AF2,bile_duct,carcinoma,0,1 U2AF2 NM_007279 exon12 c.C1349T p.T450M GCCTGACGGGCCG . 106.0 22.0 123.0 0.0 . 62 . . Atlas-SNP ZMYND8 23613 hgsc.bcm.edu hg19 20 45920579 45920579 + Silent SNP T T C novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . ZMYND8 NM_183047 exon6 c.A621G p.E207E GATGTATTCCGCA . 82.0 31.0 144.0 0.0 . 166 . . Atlas-SNP PKNOX1 5316 hgsc.bcm.edu hg19 21 44450022 44450022 + Silent SNP G G A novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . PKNOX1 NM_004571 exon11 c.G1122A p.T374T CACCACGCCCGTG . 97.0 40.0 152.0 0.0 . 40 . . Atlas-SNP PHKA2 5256 hgsc.bcm.edu hg19 X 18919622 18919622 + Missense_Mutation SNP A A T novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . PHKA2 NM_000292 exon27 c.T3008A p.L1003Q CTCCTCAGTCTGT . 210.0 101.0 315.0 0.0 . 122 . . Atlas-SNP BMP15 9210 hgsc.bcm.edu hg19 X 50653812 50653812 + Missense_Mutation SNP T T G novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . BMP15 NM_005448 exon1 c.T29G p.L10R GAATTCTTTTTCT . 236.0 47.0 269.0 0.0 . 62 . . Atlas-SNP HTATSF1 27336 hgsc.bcm.edu hg19 X 135593729 135593729 + Missense_Mutation SNP A A C novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . HTATSF1 NM_001163280 exon10 c.A1825C p.K609Q TCTGAAAAAGTGT . 127.0 40.0 244.0 0.0 . 66 . . Atlas-SNP DUSP9 1852 hgsc.bcm.edu hg19 X 152914788 152914788 + Missense_Mutation SNP G G A novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . DUSP9 NM_001395 exon3 c.G475A p.V159M GTGCCCGTGGTGG . 100.0 12.0 117.0 0.0 . 41 . . Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 3918 3918 + Missense_Mutation SNP G G C novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . . ENST00000361390 exon1 c.G612C p.E204D AGGGGAGTCCGAA . 146.0 40.0 466.0 0.0 . . . . Atlas-SNP COX2 5743 hgsc.bcm.edu hg19 MT 8184 8184 + Missense_Mutation SNP G G A novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . . ENST00000361739 exon1 c.G599A p.C200Y AAATCTGTGGAGC . 167.0 13.0 519.0 0.0 . . . . Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 15276 15276 + Missense_Mutation SNP G G A novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . . ENST00000361789 exon1 c.G530A p.R177Q TCACACGATTCTT . 165.0 158.0 497.0 1.0 . . . . Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52440340 52440348 + In_Frame_Del DEL TGCGGTCGG TGCGGTCGG - novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 TGCGGTCGG TGCGGTCGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . BAP1 NM_004656 exon9 c.705_713del p.235_238del . . 37.0 16.0 111.0 0.0 . 371 . . Atlas-INDEL CYLC1 1538 hgsc.bcm.edu hg19 X 83128315 83128316 + Frame_Shift_Del DEL AG AG - novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . CYLC1 NM_021118 exon4 c.598_599del p.200_200del . . 250.0 79.0 428.0 0.0 . 272 . . Atlas-INDEL DIP2C 22982 hgsc.bcm.edu hg19 10 460026 460026 + Frame_Shift_Del DEL G G - novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . DIP2C NM_014974 exon8 c.885delA p.P295fs . . 68.0 24.0 57.0 0.0 . 195 . . Atlas-Indel,Pindel TNPO1 3842 hgsc.bcm.edu hg19 5 72144303 72144303 + Frame_Shift_Del DEL C C - novel TCGA-BC-A10Q-01A-11D-A12Z-10 TCGA-BC-A10Q-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e 454f62ca-7688-48e6-8a59-0149d11f1fe3 . TNPO1 NM_002270 exon2 c.106delA p.T36fs . . 67.0 30.0 46.0 0.0 . 90 . . Atlas-Indel,Pindel