Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PLCH2 9651 hgsc.bcm.edu hg19 1 2436408 2436408 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . PLCH2 NM_014638 exon22 c.G4007A p.R1336Q TTGTGCGGCGCTC . 56.0 23.0 62.0 0.0 . 131 . . Atlas-SNP PRDM16 63976 hgsc.bcm.edu hg19 1 3329297 3329297 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . PRDM16 NM_022114 exon9 c.C2536T p.R846W CCGGCGCGGATGC . 65.0 34.0 88.0 0.0 . 147 . . Atlas-SNP NMNAT1 64802 hgsc.bcm.edu hg19 1 10042386 10042386 + Missense_Mutation SNP G G T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . NMNAT1 NM_022787 exon5 c.G467T p.G156V TGTGTGGGGCAGA . 84.0 27.0 92.0 0.0 . 18 . . Atlas-SNP EMC1 23065 hgsc.bcm.edu hg19 1 19568962 19568962 + Missense_Mutation SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . . NM_001271427 exon5 c.A386T p.Q129L AGTGCCTGGAAAC . 53.0 31.0 72.0 0.0 . . . . Atlas-SNP PTPRU 10076 hgsc.bcm.edu hg19 1 29602163 29602163 + Missense_Mutation SNP A A T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . PTPRU NM_001195001 exon8 c.A1348T p.I450F TACACCATCAAGA . 306.0 146.0 422.0 0.0 . 374 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34035031 34035031 + Missense_Mutation SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CSMD2 NM_052896 exon53 c.A8080T p.R2694W GCACCCTGGAGCC . 67.0 21.0 101.0 0.0 . 946 . . Atlas-SNP OMA1 115209 hgsc.bcm.edu hg19 1 58971782 58971782 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . OMA1 NM_145243 exon8 c.C1315T p.H439Y AAGGGTGTGTAGA . 78.0 18.0 96.0 0.0 . 50 . . Atlas-SNP IL23R 149233 hgsc.bcm.edu hg19 1 67648612 67648612 + Missense_Mutation SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . IL23R NM_144701 exon4 c.T461A p.I154K CCTACATAGACAC . 112.0 22.0 128.0 0.0 . 52 . . Atlas-SNP CHIA 27159 hgsc.bcm.edu hg19 1 111861228 111861228 + Silent SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CHIA NM_201653 exon9 c.T843A p.I281I TGGAATTGGTGCC . 89.0 30.0 146.0 0.0 . 115 . . Atlas-SNP HAX1 10456 hgsc.bcm.edu hg19 1 154245239 154245239 + Missense_Mutation SNP C C A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . HAX1 NM_006118 exon1 c.C40A p.P14T GGCTTTCCTGGAC . 131.0 28.0 115.0 0.0 . 25 . . Atlas-SNP PYGO2 90780 hgsc.bcm.edu hg19 1 154931785 154931785 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . PYGO2 NM_138300 exon3 c.G691A p.G231S CCTGACCAGGTCT . 157.0 14.0 144.0 0.0 . 32 . . Atlas-SNP OR10K2 391107 hgsc.bcm.edu hg19 1 158390373 158390373 + Missense_Mutation SNP A A T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . OR10K2 NM_001004476 exon1 c.T284A p.L95Q CAGCCCAGGAAAG . 139.0 41.0 112.0 0.0 . 69 . . Atlas-SNP TNFSF18 8995 hgsc.bcm.edu hg19 1 173010529 173010529 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . TNFSF18 NM_005092 exon3 c.C578T p.A193V GGATTTGCTAGTA . 148.0 91.0 121.0 0.0 . 24 . . Atlas-SNP RGSL1 353299 hgsc.bcm.edu hg19 1 182458311 182458311 + Missense_Mutation SNP A A C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . RGSL1 NM_001137669 exon8 c.A1691C p.E564A AGGTAGAGCTGAC . 165.0 31.0 119.0 0.0 . 111 . . Atlas-SNP TRIM11 81559 hgsc.bcm.edu hg19 1 228588704 228588704 + Silent SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . TRIM11 NM_145214 exon3 c.C696T p.L232L GCCCTCGAGCTCG . 82.0 45.0 80.0 0.0 . 38 . . Atlas-SNP WDR64 128025 hgsc.bcm.edu hg19 1 241920625 241920625 + Missense_Mutation SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . WDR64 NM_144625 exon14 c.T1781C p.L594P GGGAGCTGCCTGA . 107.0 71.0 93.0 0.0 . 234 . . Atlas-SNP NLRP3 114548 hgsc.bcm.edu hg19 1 247593020 247593020 + Missense_Mutation SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . NLRP3 NM_004895 exon4 c.A2290G p.T764A TGTGAAACGCTCC . 146.0 56.0 96.0 0.0 . 286 . . Atlas-SNP REG1A 5967 hgsc.bcm.edu hg19 2 79349980 79349980 + Missense_Mutation SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . REG1A NM_002909 exon5 c.A335G p.H112R GCTGGCACTGGAG . 98.0 19.0 133.0 0.0 . 74 . . Atlas-SNP SFTPB 6439 hgsc.bcm.edu hg19 2 85888601 85888601 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . SFTPB NM_198843 exon11 c.C1177T p.L393F ATCAAAGGTCGGG . 38.0 7.0 46.0 0.0 . 49 . . Atlas-SNP SFTPB 6439 hgsc.bcm.edu hg19 2 85888602 85888602 + Missense_Mutation SNP G G T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . SFTPB NM_198843 exon11 c.C1176A p.D392E TCAAAGGTCGGGG . 38.0 7.0 46.0 0.0 . 49 . . Atlas-SNP ZAP70 7535 hgsc.bcm.edu hg19 2 98349640 98349640 + Missense_Mutation SNP A A T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ZAP70 NM_001079 exon6 c.A755T p.E252V TGAAGGAGGCCTG . 133.0 65.0 165.0 0.0 . 77 . . Atlas-SNP TSN 7247 hgsc.bcm.edu hg19 2 122522838 122522838 + Silent SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . TSN NM_004622 exon6 c.C582T p.R194R GAAGCGCTACGAC . 82.0 38.0 108.0 0.0 . 31 . . Atlas-SNP METTL5 29081 hgsc.bcm.edu hg19 2 170672031 170672031 + Missense_Mutation SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . METTL5 NM_014168 exon5 c.A497G p.Q166R TTCTTTTGAACAT . 67.0 12.0 101.0 0.0 . 24 . . Atlas-SNP MYO3B 140469 hgsc.bcm.edu hg19 2 171239700 171239700 + Splice_Site SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . MYO3B NM_138995 exon11 c.1185+1G>A . CCACAGGTAAGGG . 81.0 7.0 95.0 0.0 . 320 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179424990 179424990 + Silent SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . TTN NM_001267550 exon326 c.T85869C p.Y28623Y AACACGATATTCA . 103.0 53.0 157.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179489281 179489281 + Missense_Mutation SNP A A T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . TTN NM_001267550 exon242 c.T44726A p.L14909H ATAACAAGTTTTC . 167.0 16.0 209.0 0.0 . 18412 . . Atlas-SNP SF3B1 23451 hgsc.bcm.edu hg19 2 198267481 198267481 + Missense_Mutation SNP T T G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf SF3B1,NS,carcinoma,0,10 SF3B1 NM_012433 exon14 c.A1876C p.N626H TTGTGTTACGGAC . 118.0 13.0 102.0 0.0 . 1038 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210683912 210683912 + Missense_Mutation SNP G G T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . UNC80 NM_182587 exon12 c.G1889T p.S630I ACTACAGCTACCT . 146.0 33.0 142.0 0.0 . 280 . . Atlas-SNP CCDC108 255101 hgsc.bcm.edu hg19 2 219875570 219875570 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CCDC108 NM_194302 exon25 c.G4106A p.R1369Q AAGACCCGGGCAG . 86.0 44.0 150.0 0.0 . 208 . . Atlas-SNP SCG2 7857 hgsc.bcm.edu hg19 2 224462660 224462660 + Silent SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . SCG2 NM_003469 exon2 c.T1341C p.N447N TTTCTGATTTGCT . 45.0 23.0 55.0 0.0 . 99 . . Atlas-SNP KCNH8 131096 hgsc.bcm.edu hg19 3 19384192 19384192 + Silent SNP T T C rs150723210 TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . KCNH8 NM_144633 exon4 c.T556C p.L186L AACAAATTGAAAA . 146.0 39.0 178.0 0.0 . 189 . T|1.000;C|0.000 Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266137 41266137 + Missense_Mutation SNP C C T rs121913409 bycluster TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf CTNNB1,NS,carcinoma,+1,2 CTNNB1 NM_001098209 exon3 c.C134T p.S45F CTCCTTCTCTGAG . 121.0 60.0 135.0 0.0 . 4904 . . Atlas-SNP KIF15 56992 hgsc.bcm.edu hg19 3 44841897 44841897 + Missense_Mutation SNP G G T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . KIF15 NM_020242 exon11 c.G1190T p.G397V CTTCAGGACAGAC . 311.0 80.0 385.0 0.0 . 103 . . Atlas-SNP SEMA3F 6405 hgsc.bcm.edu hg19 3 50225206 50225206 + Silent SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . SEMA3F NM_004186 exon19 c.T2016C p.D672D CAGCGATCGTGGC . 69.0 37.0 76.0 0.0 . 62 . . Atlas-SNP GRM2 2912 hgsc.bcm.edu hg19 3 51749599 51749599 + Nonsense_Mutation SNP G G T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . GRM2 NM_000839 exon4 c.G1810T p.E604X GGTCGGGAGCTCT . 51.0 13.0 45.0 0.0 . 91 . . Atlas-SNP OR5H2 79310 hgsc.bcm.edu hg19 3 98001887 98001887 + Silent SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . OR5H2 NM_001005482 exon1 c.T156C p.A52A GATTGCTCTTATC . 103.0 49.0 124.0 0.0 . 63 . . Atlas-SNP OR5K4 403278 hgsc.bcm.edu hg19 3 98072899 98072899 + Silent SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . OR5K4 NM_001005517 exon1 c.C202T p.L68L CTGGCTCTGATGG . 61.0 18.0 108.0 0.0 . 75 . . Atlas-SNP GNB4 59345 hgsc.bcm.edu hg19 3 179131380 179131380 + Silent SNP A A C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . GNB4 NM_021629 exon8 c.T519G p.T173T CTGGGCAGTTTCG . 236.0 35.0 166.0 0.0 . 37 . . Atlas-SNP MASP1 5648 hgsc.bcm.edu hg19 3 186978538 186978538 + Missense_Mutation SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . MASP1 NM_139125 exon4 c.A538G p.T180A GGCAGGTCCTGTT . 133.0 37.0 115.0 0.0 . 240 . . Atlas-SNP BOD1L1 259282 hgsc.bcm.edu hg19 4 13578590 13578590 + Silent SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . . NM_148894 exon25 c.C8910T p.R2970R TTTCTGGCGTTTT . 78.0 43.0 74.0 0.0 . . . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88536436 88536436 + Silent SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . DSPP NM_014208 exon5 c.C2622T p.S874S CAGCAGCAACAGC . 245.0 19.0 293.0 0.0 . 174 . . Atlas-SNP KIAA0922 23240 hgsc.bcm.edu hg19 4 154519794 154519794 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . KIAA0922 NM_001131007 exon21 c.G2176A p.E726K GCAAGAGAGTTAT . 125.0 64.0 144.0 0.0 . 214 . . Atlas-SNP RGS7BP 401190 hgsc.bcm.edu hg19 5 63802553 63802553 + Silent SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . RGS7BP NM_001029875 exon1 c.G102A p.E34E TTGGGAGCGCAGG . 295.0 126.0 318.0 1.0 . 32 . . Atlas-SNP PRDM6 93166 hgsc.bcm.edu hg19 5 122435525 122435525 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . PRDM6 NM_001136239 exon3 c.G769A p.G257S GTGCCCGGCCTGG . 180.0 82.0 197.0 0.0 . 26 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127666336 127666336 + Missense_Mutation SNP C C A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . FBN2 NM_001999 exon33 c.G4274T p.C1425F TTTACACACTGAG . 143.0 64.0 126.0 0.0 . 858 . . Atlas-SNP PCDHB16 57717 hgsc.bcm.edu hg19 5 140563472 140563472 + Missense_Mutation SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . PCDHB16 NM_020957 exon1 c.T1338A p.D446E CAATGATAACGCC . 108.0 43.0 128.0 0.0 . 159 . . Atlas-SNP PCDHGA4 56111 hgsc.bcm.edu hg19 5 140735666 140735666 + Missense_Mutation SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf PCDHGA4_ENST00000571252,NS,carcinoma,0,2 PCDHGA4 NM_018917 exon1 c.A899G p.D300G GTGGGGATATAAC . 106.0 9.0 101.0 2.0 . 150 . . Atlas-SNP MAPK9 5601 hgsc.bcm.edu hg19 5 179666988 179666988 + Splice_Site SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . MAPK9 NM_002752 exon11 c.997-1G>A . TGGTGGCTAAAAA . 29.0 9.0 35.0 0.0 . 173 . . Atlas-SNP DTNBP1 84062 hgsc.bcm.edu hg19 6 15663083 15663083 + Silent SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . DTNBP1 NM_183040 exon1 c.C18T p.R6R CCGCTCGCGAAGG . 132.0 35.0 97.0 0.0 . 56 . . Atlas-SNP FAM65B 9750 hgsc.bcm.edu hg19 6 24874014 24874014 + Missense_Mutation SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . FAM65B NM_015864 exon3 c.A115T p.I39F TTTCAATGAAGGA . 127.0 75.0 88.0 0.0 . 134 . . Atlas-SNP TNFRSF21 27242 hgsc.bcm.edu hg19 6 47253741 47253741 + Silent SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . TNFRSF21 NM_014452 exon2 c.C687T p.I229I TGGAAAGATGGCT . 157.0 43.0 114.0 0.0 . 61 . . Atlas-SNP ELOVL5 60481 hgsc.bcm.edu hg19 6 53159142 53159142 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ELOVL5 NM_001242831 exon3 c.C206T p.S69F GGCAAAGAGCTCT . 260.0 66.0 191.0 0.0 . 25 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56484410 56484410 + Missense_Mutation SNP T T G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . DST NM_001723 exon23 c.A4422C p.E1474D AAGAGATTCTAAT . 110.0 27.0 74.0 0.0 . 1427 . . Atlas-SNP LGSN 51557 hgsc.bcm.edu hg19 6 63995538 63995538 + Missense_Mutation SNP A A C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . LGSN NM_016571 exon3 c.T284G p.L95R CCGTGGAGGTCTG . 143.0 45.0 122.0 0.0 . 82 . . Atlas-SNP LCA5 167691 hgsc.bcm.edu hg19 6 80223048 80223048 + Missense_Mutation SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . LCA5 NM_001122769 exon3 c.T601C p.F201L AGGAAAATTTTGT . 121.0 50.0 133.0 0.0 . 71 . . Atlas-SNP FRMD1 79981 hgsc.bcm.edu hg19 6 168462619 168462619 + Missense_Mutation SNP G G T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . FRMD1 NM_024919 exon8 c.C913A p.Q305K GCTTCTGTGCTGC . 150.0 56.0 132.0 0.0 . 52 . . Atlas-SNP CDK13 8621 hgsc.bcm.edu hg19 7 40133764 40133764 + Missense_Mutation SNP A A C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CDK13 NM_003718 exon14 c.A3724C p.I1242L ATGAGGATCTTGG . 117.0 44.0 150.0 0.0 . 114 . . Atlas-SNP ZC3HAV1 56829 hgsc.bcm.edu hg19 7 138794071 138794071 + Missense_Mutation SNP C C A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ZC3HAV1 NM_024625 exon1 c.G7T p.D3Y CCGGGTCCGCCAT . 67.0 6.0 73.0 0.0 . 75 . . Atlas-SNP FASTK 10922 hgsc.bcm.edu hg19 7 150776949 150776949 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf FASTK,NS,carcinoma,0,1 FASTK NM_006712 exon2 c.G143A p.R48Q GACAGCCGAGCAG . 222.0 22.0 225.0 0.0 . 29 . . Atlas-SNP STAR 6770 hgsc.bcm.edu hg19 8 38006210 38006210 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . STAR NM_000349 exon2 c.C127T p.P43S GGGTGGGGCCCCC . 19.0 8.0 46.0 0.0 . 29 . . Atlas-SNP POLB 5423 hgsc.bcm.edu hg19 8 42218856 42218856 + Silent SNP C C A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . POLB NM_002690 exon10 c.C594A p.P198P CCATCCCAGCTTC . 40.0 20.0 76.0 0.0 . 60 . . Atlas-SNP CRISPLD1 83690 hgsc.bcm.edu hg19 8 75929313 75929313 + Missense_Mutation SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CRISPLD1 NM_031461 exon9 c.A961G p.K321E GATAGTAAAGCTA . 301.0 48.0 211.0 0.0 . 94 . . Atlas-SNP CDH17 1015 hgsc.bcm.edu hg19 8 95164135 95164135 + Missense_Mutation SNP C C T rs189236130 by1000genomes;alternate_allele TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CDH17 NM_004063 exon13 c.G1757A p.G586D ACATTGCCCACTT . 109.0 79.0 89.0 0.0 . 119 . C|1.000;A|0.000 Atlas-SNP DOCK8 81704 hgsc.bcm.edu hg19 9 376287 376287 + Silent SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . DOCK8 NM_203447 exon19 c.T2187C p.V729V AGCTGTTTCTTCT . 91.0 45.0 106.0 0.0 . 401 . . Atlas-SNP KIAA2026 158358 hgsc.bcm.edu hg19 9 5921657 5921657 + Missense_Mutation SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . KIAA2026 NM_001017969 exon8 c.A4339G p.K1447E AACTTTTTGTGAT . 91.0 19.0 122.0 0.0 . 231 . . Atlas-SNP AQP7 364 hgsc.bcm.edu hg19 9 33385103 33385103 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf AQP7,colon,carcinoma,0,1 AQP7 NM_001170 exon8 c.C929T p.T310M GAGATCGTGGGTT . 49.0 3.0 52.0 0.0 . 58 . . Atlas-SNP GADD45G 10912 hgsc.bcm.edu hg19 9 92220779 92220779 + Missense_Mutation SNP A A C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . GADD45G NM_006705 exon3 c.A353C p.H118P ACCTGCACTGCAT . 74.0 36.0 86.0 0.0 . 12 . . Atlas-SNP ZNF483 158399 hgsc.bcm.edu hg19 9 114304529 114304529 + Silent SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ZNF483 NM_133464 exon6 c.T1314C p.T438T AAAAACTCATAAA . 78.0 15.0 99.0 0.0 . 78 . . Atlas-SNP RAB14 51552 hgsc.bcm.edu hg19 9 123943729 123943729 + Missense_Mutation SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . RAB14 NM_016322 exon8 c.A593G p.Q198R CCTCCCTGCGGGG . 134.0 51.0 177.0 0.0 . 14 . . Atlas-SNP ANGPTL2 23452 hgsc.bcm.edu hg19 9 129854065 129854065 + Missense_Mutation SNP T T G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ANGPTL2 NM_012098 exon4 c.A1166C p.E389A TCGCTCTCAGGTT . 97.0 7.0 114.0 0.0 . 46 . . Atlas-SNP C9orf163 158055 hgsc.bcm.edu hg19 9 139379108 139379108 + Missense_Mutation SNP G G C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . C9orf163 NM_152571 exon1 c.G208C p.G70R AGGGAGGGGGTGA . 87.0 44.0 117.0 0.0 . 9 . . Atlas-SNP ARMC3 219681 hgsc.bcm.edu hg19 10 23292182 23292182 + Missense_Mutation SNP G G C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ARMC3 NM_173081 exon13 c.G1570C p.D524H GCTTTAGATATCC . 144.0 56.0 163.0 0.0 . 102 . . Atlas-SNP CNNM1 26507 hgsc.bcm.edu hg19 10 101120654 101120654 + Missense_Mutation SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CNNM1 NM_020348 exon3 c.T1780C p.F594L TCCTTGTTTAAGC . 75.0 34.0 55.0 0.0 . 101 . . Atlas-SNP PCGF6 84108 hgsc.bcm.edu hg19 10 105110554 105110554 + Silent SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf RNF134,right_lower_lobe,carcinoma,0,2 PCGF6 NM_001011663 exon1 c.G270A p.L90L CTCCTCCAGCTCC . 74.0 8.0 76.0 0.0 . 23 . . Atlas-SNP DCHS1 8642 hgsc.bcm.edu hg19 11 6643123 6643123 + Missense_Mutation SNP C C G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . DCHS1 NM_003737 exon21 c.G9784C p.A3262P GAGCAGCCAGAGG . 69.0 12.0 59.0 0.0 . 277 . . Atlas-SNP OR2AG1 144125 hgsc.bcm.edu hg19 11 6806964 6806964 + Silent SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . OR2AG1 NM_001004489 exon1 c.G696A p.E232E AAATGAGGGGAGG . 67.0 31.0 84.0 0.0 . 57 . . Atlas-SNP ROM1 6094 hgsc.bcm.edu hg19 11 62381849 62381849 + Missense_Mutation SNP C C G rs374111556 TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ROM1 NM_000327 exon2 c.C710G p.P237R CCCACCCCCTGTT . 53.0 15.0 84.0 0.0 . 32 . . Atlas-SNP B3GAT3 26229 hgsc.bcm.edu hg19 11 62389402 62389402 + Silent SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . B3GAT3 NM_012200 exon1 c.G18A p.K6K CACGTTCTTCAGC . 177.0 9.0 216.0 0.0 . 24 . . Atlas-SNP ACER3 55331 hgsc.bcm.edu hg19 11 76727823 76727823 + Missense_Mutation SNP G G C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ACER3 NM_018367 exon9 c.G704C p.S235T TTTTCAGGTAGGA . 66.0 19.0 82.0 0.0 . 19 . . Atlas-SNP DSCAML1 57453 hgsc.bcm.edu hg19 11 117374731 117374731 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . DSCAML1 NM_020693 exon11 c.G2368A p.G790R GGTTCCCGCTCCC . 56.0 13.0 72.0 0.0 . 286 . . Atlas-SNP OR8B4 283162 hgsc.bcm.edu hg19 11 124294237 124294237 + Silent SNP C C A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . OR8B4 NM_001005196 exon1 c.G531T p.L177L GTCACACAGATAA . 90.0 52.0 138.0 0.0 . 60 . . Atlas-SNP LEPREL2 10536 hgsc.bcm.edu hg19 12 6946251 6946251 + Splice_Site SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . LEPREL2 NM_014262 exon10 c.1559+1G>A . GCGCAGGTGAGCA . 15.0 12.0 23.0 0.0 . 87 . . Atlas-SNP C12orf77 196415 hgsc.bcm.edu hg19 12 25148920 25148920 + Silent SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . C12orf77 NM_001101339 exon3 c.A228T p.R76R CATCCATCGTATG . 143.0 75.0 134.0 0.0 . 18 . . Atlas-SNP ARID2 196528 hgsc.bcm.edu hg19 12 46231189 46231189 + Nonsense_Mutation SNP T T G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ARID2 NM_152641 exon9 c.T1109G p.L370X GATTTTTAAAGAT . 105.0 53.0 131.0 0.0 . 311 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49445845 49445845 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . MLL2 NM_003482 exon10 c.G1621A p.E541K ATGCTTCAGGTGG . 120.0 23.0 135.0 0.0 . 1173 . . Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57562953 57562953 + Missense_Mutation SNP C C A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . LRP1 NM_002332 exon20 c.C3026A p.A1009D ACGAAGCCGGCTG . 65.0 41.0 57.0 0.0 . 428 . . Atlas-SNP P2RX7 5027 hgsc.bcm.edu hg19 12 121622253 121622253 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . P2RX7 NM_002562 exon13 c.G1436A p.C479Y GCCAGTGTGGAAG . 70.0 11.0 52.0 0.0 . 53 . . Atlas-SNP KNTC1 9735 hgsc.bcm.edu hg19 12 123057714 123057714 + Missense_Mutation SNP G G C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf KNTC1,NS,carcinoma,0,1 KNTC1 NM_014708 exon26 c.G2165C p.R722P TGTTCCGAATGTT . 143.0 34.0 155.0 0.0 . 182 . . Atlas-SNP FOXO1 2308 hgsc.bcm.edu hg19 13 41134803 41134803 + Silent SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . FOXO1 NM_002015 exon2 c.A825G p.A275A GAGAGATGCTTTC . 101.0 25.0 129.0 0.0 . 110 . . Atlas-SNP PCDH20 64881 hgsc.bcm.edu hg19 13 61985776 61985776 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . PCDH20 NM_022843 exon2 c.G2456A p.R819H AGTAAGCGATGGA . 85.0 14.0 98.0 0.0 . 265 . . Atlas-SNP PRKCH 5583 hgsc.bcm.edu hg19 14 61924300 61924300 + Missense_Mutation SNP A A T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . PRKCH NM_006255 exon9 c.A1181T p.D394V TGCAGGATGATGA . 109.0 44.0 98.0 0.0 . 89 . . Atlas-SNP KCNH5 27133 hgsc.bcm.edu hg19 14 63246590 63246590 + Silent SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . KCNH5 NM_139318 exon10 c.T1875C p.H625H ACATGCATGGGCA . 152.0 74.0 155.0 0.0 . 320 . . Atlas-SNP MLH3 27030 hgsc.bcm.edu hg19 14 75514207 75514207 + Missense_Mutation SNP G G C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . MLH3 NM_014381 exon2 c.C2152G p.P718A ACCAGGGGAAAGA . 119.0 31.0 108.0 0.0 . 200 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105416987 105416987 + Missense_Mutation SNP G G C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf AHNAK2_ENST00000333244,NS,carcinoma,0,1 AHNAK2 NM_138420 exon7 c.C4801G p.P1601A GCTTGGGGCCCTT . 103.0 7.0 102.0 2.0 . 719 . . Atlas-SNP ZFP106 64397 hgsc.bcm.edu hg19 15 42743691 42743691 + Missense_Mutation SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ZFP106 NM_022473 exon2 c.A710T p.Y237F CCACTGTAATTCC . 95.0 24.0 118.0 0.0 . 117 . . Atlas-SNP ZNF609 23060 hgsc.bcm.edu hg19 15 64967423 64967423 + Silent SNP T T C rs368660859 TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ZNF609 NM_015042 exon4 c.T2370C p.A790A CAAGGCTGAAGCC . 80.0 44.0 92.0 0.0 . 106 . . Atlas-SNP CHRNA5 1138 hgsc.bcm.edu hg19 15 78873234 78873234 + Missense_Mutation SNP G G A rs202057419 TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CHRNA5 NM_000745 exon2 c.G188A p.R63H GGGTTCGTCCTGT . 65.0 25.0 100.0 0.0 . 48 . . Atlas-SNP MPV17L 255027 hgsc.bcm.edu hg19 16 15501839 15501839 + Nonsense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . MPV17L NM_173803 exon3 c.G390A p.W130X ACGCTGGAGTCTG . 118.0 48.0 90.0 0.0 . 21 . . Atlas-SNP ABCC1 4363 hgsc.bcm.edu hg19 16 16177302 16177302 + Missense_Mutation SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ABCC1 NM_004996 exon17 c.T2195A p.L732Q GTCAGCTGGAGGA . 134.0 40.0 141.0 0.0 . 156 . . Atlas-SNP GPT2 84706 hgsc.bcm.edu hg19 16 46956209 46956209 + Missense_Mutation SNP G G T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . GPT2 NM_133443 exon9 c.G1093T p.G365C ATCAAGGGCCAGC . 50.0 17.0 59.0 0.0 . 40 . . Atlas-SNP CYLD 1540 hgsc.bcm.edu hg19 16 50816274 50816274 + Missense_Mutation SNP A A C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CYLD NM_015247 exon12 c.A1723C p.T575P GAAAATACTCCAC . 146.0 63.0 141.0 0.0 . 150 . . Atlas-SNP CHST5 23563 hgsc.bcm.edu hg19 16 75563641 75563641 + Silent SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CHST5 NM_024533 exon3 c.G642A p.A214A GTTGAGCGCGGGG . 59.0 21.0 67.0 0.0 . 47 . . Atlas-SNP CTC1 80169 hgsc.bcm.edu hg19 17 8141726 8141726 + Missense_Mutation SNP C C A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CTC1 NM_025099 exon3 c.G419T p.G140V AGGACGCCAGTGT . 104.0 50.0 111.0 0.0 . 75 . . Atlas-SNP STX8 9482 hgsc.bcm.edu hg19 17 9460750 9460750 + Splice_Site SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . STX8 NM_004853 exon4 c.212+1G>A . TGGATACATCTGA . 72.0 32.0 92.0 0.0 . 28 . . Atlas-SNP ULK2 9706 hgsc.bcm.edu hg19 17 19699421 19699421 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ULK2 NM_001142610 exon19 c.G1984A p.A662T ACACTGCCTTGCT . 104.0 15.0 100.0 0.0 . 142 . . Atlas-SNP AKAP1 8165 hgsc.bcm.edu hg19 17 55183730 55183730 + Missense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . AKAP1 NM_001242902 exon3 c.G905A p.G302E TCGAGGGAGAACT . 98.0 41.0 102.0 0.0 . 73 . . Atlas-SNP MARCH10 162333 hgsc.bcm.edu hg19 17 60821843 60821843 + Silent SNP C C A rs199898215 by1000genomes;alternate_allele TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf MARCH10,NS,carcinoma,0,1 MARCH10 NM_001100875 exon5 c.G429T p.L143L TCTCCTCAGGTTT . 73.0 25.0 83.0 0.0 . 102 . C|1.000;G|0.000 Atlas-SNP MFSD11 79157 hgsc.bcm.edu hg19 17 74737074 74737074 + Missense_Mutation SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . MFSD11 NM_001242536 exon4 c.A188G p.N63S CTTCAAATTTGAT . 77.0 27.0 73.0 0.0 . 47 . . Atlas-SNP ZNF521 25925 hgsc.bcm.edu hg19 18 22805711 22805711 + Missense_Mutation SNP C C A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ZNF521 NM_015461 exon4 c.G2171T p.C724F AGGGTGCAGCGAA . 156.0 61.0 136.0 0.0 . 269 . . Atlas-SNP BOD1L2 284257 hgsc.bcm.edu hg19 18 54814759 54814759 + Silent SNP G G T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . BOD1L2 NM_001257964 exon1 c.G216T p.L72L AAACCTGAGCCAG . 31.0 8.0 25.0 0.0 . 1 . . Atlas-SNP NEDD4L 23327 hgsc.bcm.edu hg19 18 55833084 55833084 + Missense_Mutation SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . NEDD4L NM_015277 exon2 c.T113A p.F38Y ACATCTTTGGAGC . 88.0 11.0 116.0 0.0 . 126 . . Atlas-SNP SERPINB13 5275 hgsc.bcm.edu hg19 18 61260116 61260116 + Missense_Mutation SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . SERPINB13 NM_012397 exon5 c.A383G p.Y128C AATATTATCATGC . 97.0 37.0 88.0 0.0 . 51 . . Atlas-SNP CDC37 11140 hgsc.bcm.edu hg19 19 10514108 10514108 + Missense_Mutation SNP T T G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CDC37 NM_007065 exon1 c.A48C p.E16D CTCGTCTTCATCA . 43.0 19.0 46.0 0.0 . 32 . . Atlas-SNP CPAMD8 27151 hgsc.bcm.edu hg19 19 17004084 17004084 + Silent SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CPAMD8 NM_015692 exon42 c.C5634T p.S1878S GAACGGGCTGGCG . 57.0 11.0 64.0 0.0 . 192 . . Atlas-SNP GATAD2A 54815 hgsc.bcm.edu hg19 19 19612126 19612126 + Silent SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . GATAD2A NM_017660 exon9 c.G1401A p.Q467Q GCTGCAGCAGGAA . 146.0 58.0 159.0 0.0 . 81 . . Atlas-SNP TSHZ3 57616 hgsc.bcm.edu hg19 19 31767550 31767550 + Missense_Mutation SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf TSHZ3_ENST00000240587,right_upper_lobe,carcinoma,0,2 TSHZ3 NM_020856 exon2 c.T3149C p.F1050S CTGGCAAAGGTCC . 185.0 78.0 228.0 0.0 . 549 . . Atlas-SNP SUPT5H 6829 hgsc.bcm.edu hg19 19 39961060 39961060 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . SUPT5H NM_003169 exon17 c.C1574T p.A525V AGACAGCATCAGG . 105.0 38.0 119.0 0.0 . 119 . . Atlas-SNP LENG8 114823 hgsc.bcm.edu hg19 19 54964820 54964820 + Silent SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . LENG8 NM_052925 exon5 c.A411G p.Q137Q ACACCAAGGGACT . 23.0 4.0 21.0 0.0 . 73 . . Atlas-SNP BTBD3 22903 hgsc.bcm.edu hg19 20 11899220 11899220 + Nonsense_Mutation SNP G G A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . BTBD3 NM_014962 exon1 c.G297A p.W99X AAACTGGCAGGGT . 182.0 88.0 213.0 0.0 . 92 . . Atlas-SNP E2F1 1869 hgsc.bcm.edu hg19 20 32265105 32265105 + Missense_Mutation SNP C C A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . E2F1 NM_005225 exon6 c.G872T p.G291V ATCGGGCCTTGTT . 104.0 19.0 112.0 0.0 . 41 . . Atlas-SNP SOGA1 140710 hgsc.bcm.edu hg19 20 35422173 35422173 + Missense_Mutation SNP T T C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . SOGA1 NM_080627 exon14 c.A4312G p.K1438E CATACTTGGGGGA . 22.0 10.0 27.0 0.0 . 136 . . Atlas-SNP BMP7 655 hgsc.bcm.edu hg19 20 55746127 55746127 + Missense_Mutation SNP C C A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . BMP7 NM_001719 exon7 c.G1184T p.C395F GCACAGCAGGGCT . 99.0 32.0 124.0 0.0 . 60 . . Atlas-SNP GAB4 128954 hgsc.bcm.edu hg19 22 17446135 17446135 + Silent SNP T T G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . GAB4 NM_001037814 exon7 c.A1312C p.R438R TGTTTCTCAGGTT . 116.0 52.0 121.0 0.0 . 95 . . Atlas-SNP BPIFC 254240 hgsc.bcm.edu hg19 22 32833794 32833794 + Missense_Mutation SNP T T A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . . NM_174932 exon7 c.A700T p.I234F AACTGATTAGGGA . 58.0 17.0 64.0 0.0 . . . . Atlas-SNP MPST 4357 hgsc.bcm.edu hg19 22 37425290 37425290 + Missense_Mutation SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . MPST NM_021126 exon3 c.A689G p.N230S CCGTGAACATCCC . 128.0 56.0 111.0 0.0 . 14 . . Atlas-SNP ENTHD1 150350 hgsc.bcm.edu hg19 22 40140015 40140015 + Missense_Mutation SNP G G C novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ENTHD1 NM_152512 exon7 c.C1493G p.S498C GAATCAGAGTTAT . 118.0 52.0 134.0 0.0 . 83 . . Atlas-SNP CXorf38 159013 hgsc.bcm.edu hg19 X 40506585 40506585 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CXorf38 NM_144970 exon1 c.G188A p.G63D CGTGAGCCGCCGC . 10.0 6.0 23.0 0.0 . 29 . . Atlas-SNP PDZD4 57595 hgsc.bcm.edu hg19 X 153068845 153068845 + Missense_Mutation SNP C C T novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . PDZD4 NM_032512 exon8 c.G2273A p.R758Q TAGACCCGCTTGC . 21.0 15.0 32.0 0.0 . 67 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13722 13722 + Silent SNP A A G novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . . ENST00000361567 exon1 c.A1386G p.L462L AAGCCTATTCGCA . 35.0 33.0 24.0 0.0 . . . . Atlas-SNP CHEK1 1111 hgsc.bcm.edu hg19 11 125496682 125496683 + Frame_Shift_Ins INS - - A novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . CHEK1 NM_001114122 exon2 c.19_20insA p.E7fs . . 159.0 26.0 155.0 0.0 . 44 . . Atlas-Indel,Pindel DENND5B 160518 hgsc.bcm.edu hg19 12 31633069 31633069 + Frame_Shift_Del DEL A A - novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . DENND5B NM_144973 exon3 c.359delA p.Y120fs . . 80.0 36.0 104.0 0.0 . 114 . . Atlas-Indel,Pindel AIM1L 55057 hgsc.bcm.edu hg19 1 26671856 26671856 + Frame_Shift_Del DEL G G - novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . AIM1L NM_001039775 exon2 c.1294delA p.S432fs . . 53.0 23.0 54.0 0.0 . 98 . . Atlas-Indel,Pindel MRGPRF 116535 hgsc.bcm.edu hg19 11 68772841 68772841 + Frame_Shift_Del DEL C C - novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . MRGPRF NM_001098515 exon3 c.938delC p.A313fs . . 28.0 13.0 48.0 0.0 . 22 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74279213 74279215 + In_Frame_Del DEL TGT TGT - novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 TGT TGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ALB NM_000477 exon8 c.919_921del p.307_307del . . 128.0 30.0 154.0 0.0 . 132 . . Atlas-Indel,Pindel GIGYF1 64599 hgsc.bcm.edu hg19 7 100284298 100284298 + Frame_Shift_Del DEL C C - novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . GIGYF1 NM_022574 exon7 c.669delC p.G223fs . . 63.0 34.0 57.0 0.0 . 113 . . Atlas-Indel,Pindel ALB 213 hgsc.bcm.edu hg19 4 74283862 74283863 + Frame_Shift_Del DEL AG AG - novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . ALB NM_000477 exon12 c.1485_1486del p.495_496del . . 67.0 13.0 98.0 0.0 . 132 . . Pindel UMODL1 89766 hgsc.bcm.edu hg19 21 43531290 43531364 + In_Frame_Del DEL CCAGCCAGGGGAGCCCCAGCCAGGGGAGCCTCAGACAGGAGAGTACCAGCCAGGCGAGCCCCAGCCAGAGGAGCA CCAGCCAGGGGAGCCCCAGCCAGGGGAGCCTCAGACAGGAGAGTACCAGCCAGGCGAGCCCCAGCCAGAGGAGCA - novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 CCAGCCAGGGGAGCCCCAGCCAGGGGAGCCTCAGACAGGAGAGTACCAGCCAGGCGAGCCCCAGCCAGAGGAGCA CCAGCCAGGGGAGCCCCAGCCAGGGGAGCCTCAGACAGGAGAGTACCAGCCAGGCGAGCCCCAGCCAGAGGAGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . UMODL1 NM_173568 exon11 c.1957_2031del p.653_677del . . 76.0 16.0 66.0 0.0 . 186 . . Pindel MUC4 4585 hgsc.bcm.edu hg19 3 195506007 195506102 + In_Frame_Del DEL GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC - novel TCGA-3K-AAZ8-01A-12D-A38X-10 TCGA-3K-AAZ8-10A-01D-A38X-10 GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf . MUC4 NM_018406 exon2 c.12350_12445del p.4117_4149del . . 309.0 25.0 225.0 0.0 . 1505 . . Pindel