Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
GRIK3	2899	hgsc.bcm.edu	hg19	1	37356579	37356579	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	GRIK3	NM_000831	exon2	c.C234A	p.T78T	GGTCAAGGTTGTG	.	128.0	41.0	54.0	0.0	.	195	.	.	Atlas-SNP
C8A	731	hgsc.bcm.edu	hg19	1	57378219	57378219	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	C8A	NM_000562	exon10	c.C1524T	p.P508P	GGTGCCCATCCTC	.	490.0	122.0	229.0	0.0	.	103	.	.	Atlas-SNP
PYCR2	29920	hgsc.bcm.edu	hg19	1	226109910	226109910	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	PYCR2	NM_013328	exon3	c.G312A	p.V104V	CTTCTCCACAGAG	.	69.0	12.0	45.0	0.0	.	13	.	.	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	hg19	1	234534263	234534263	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	TARBP1	NM_005646	exon26	c.A4108T	p.I1370F	CTTCAATAAGGCC	.	93.0	12.0	50.0	0.0	.	111	.	.	Atlas-SNP
PAPOLG	64895	hgsc.bcm.edu	hg19	2	61014655	61014655	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	PAPOLG	NM_022894	exon15	c.C1296T	p.Y432Y	CAATTACGTATCA	.	262.0	25.0	143.0	0.0	.	66	.	.	Atlas-SNP
TGFBRAP1	9392	hgsc.bcm.edu	hg19	2	105892080	105892080	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	TGFBRAP1	NM_004257	exon8	c.C1602G	p.T534T	GCAGTAGGTAAGA	.	174.0	26.0	138.0	0.0	.	70	.	.	Atlas-SNP
TMEM87B	84910	hgsc.bcm.edu	hg19	2	112813302	112813302	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	TMEM87B	NM_032824	exon1	c.A134C	p.E45A	TCCCTGAGCTCGG	.	210.0	24.0	260.0	0.0	.	52	.	.	Atlas-SNP
PDE1A	5136	hgsc.bcm.edu	hg19	2	183129067	183129067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	PDE1A	NM_001258312	exon3	c.C188T	p.A63V	GATGCCGCATATT	.	198.0	36.0	78.0	0.0	.	184	.	.	Atlas-SNP
USP37	57695	hgsc.bcm.edu	hg19	2	219374706	219374706	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	USP37	NM_020935	exon11	c.C1021T	p.Q341X	ACCCCTGCAGTTG	.	126.0	50.0	73.0	0.0	.	76	.	.	Atlas-SNP
GPC1	2817	hgsc.bcm.edu	hg19	2	241405663	241405663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	GPC1	NM_002081	exon9	c.C1633T	p.L545F	CCCCTCCTCCTCT	.	188.0	90.0	162.0	0.0	.	32	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4699862	4699862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	ITPR1	NM_001099952	exon13	c.A1051G	p.M351V	GAAAAGATGGTAT	.	77.0	30.0	48.0	0.0	.	659	.	.	Atlas-SNP
TACC3	10460	hgsc.bcm.edu	hg19	4	1746478	1746478	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	TACC3	NM_006342	exon15	c.G2370A	p.Q790Q	GGCCCAGGCGGAA	.	128.0	66.0	66.0	0.0	.	69	.	.	Atlas-SNP
KLF3	51274	hgsc.bcm.edu	hg19	4	38696400	38696400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	KLF3,right_upper_lobe,carcinoma,0,1	KLF3	NM_016531	exon5	c.G729C	p.K243N	TGGGAAGAGACCT	.	105.0	8.0	64.0	0.0	.	40	.	.	Atlas-SNP
CEP44	80817	hgsc.bcm.edu	hg19	4	175224920	175224920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	CEP44,NS,carcinoma,0,1	CEP44	NM_001040157	exon5	c.G304A	p.A102T	GGGTTTGCAGAAT	.	239.0	35.0	184.0	0.0	.	35	.	.	Atlas-SNP
TRIM23	373	hgsc.bcm.edu	hg19	5	64909990	64909990	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	TRIM23,colon,carcinoma,+1,1	TRIM23	NM_033228	exon3	c.C301T	p.R101X	GCAGTCGTTCCAA	.	449.0	201.0	211.0	1.0	.	73	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90106981	90106981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	GPR98	NM_032119	exon74	c.A15904G	p.I5302V	ACCCTTATATTCC	.	169.0	38.0	123.0	0.0	.	605	.	.	Atlas-SNP
PRR16	51334	hgsc.bcm.edu	hg19	5	120022106	120022106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	PRR16,NS,carcinoma,+1,1	PRR16	NM_016644	exon3	c.G548A	p.R183Q	GAGTTCGGTTTAA	.	183.0	31.0	105.0	0.0	.	71	.	.	Atlas-SNP
AFF4	27125	hgsc.bcm.edu	hg19	5	132270588	132270588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	AFF4	NM_014423	exon3	c.G169A	p.G57R	AGTTTCCAAGCAT	.	62.0	23.0	53.0	0.0	.	120	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90513095	90513095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	MDN1,NS,carcinoma,0,1	MDN1	NM_014611	exon2	c.T281C	p.L94P	ACACATAGCCGTT	.	49.0	2.0	83.0	0.0	.	478	.	.	Atlas-SNP
TMEM168	64418	hgsc.bcm.edu	hg19	7	112407741	112407741	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	TMEM168	NM_022484	exon5	c.C1605A	p.S535S	ACAAAAGGAACCA	.	63.0	17.0	26.0	0.0	.	84	.	.	Atlas-SNP
NOS3	4846	hgsc.bcm.edu	hg19	7	150696315	150696315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	NOS3	NM_001160111	exon8	c.G994A	p.A332T	TGGTACGCCCTCC	.	61.0	9.0	42.0	0.0	.	131	.	.	Atlas-SNP
HGSNAT	138050	hgsc.bcm.edu	hg19	8	43054562	43054562	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	HGSNAT	NM_152419	exon18	c.C1758T	p.H586H	CGGCCACGAGGTG	.	99.0	16.0	60.0	0.0	.	85	.	.	Atlas-SNP
PAG1	55824	hgsc.bcm.edu	hg19	8	81888977	81888977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	PAG1	NM_018440	exon9	c.A1101C	p.K367N	TGGAGTTTTTTCG	.	217.0	93.0	66.0	0.0	.	39	.	.	Atlas-SNP
C8orf33	65265	hgsc.bcm.edu	hg19	8	146278706	146278706	+	Nonsense_Mutation	SNP	C	C	T	rs376887084		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	C8orf33	NM_023080	exon4	c.C427T	p.R143X	GCAATCCGAACCC	.	191.0	41.0	156.0	0.0	.	25	.	.	Atlas-SNP
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27313397	27313397	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	ANKRD26	NM_014915	exon28	c.A4064C	p.E1355A	TCTAATTCAACAT	.	240.0	29.0	168.0	0.0	.	179	.	.	Atlas-SNP
EED	8726	hgsc.bcm.edu	hg19	11	85977167	85977167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	EED	NM_003797	exon8	c.G769A	p.D257N	GGTATGGATCATT	.	140.0	21.0	106.0	0.0	.	50	.	.	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	hg19	12	19467760	19467760	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	PLEKHA5	NM_001256470	exon16	c.G2050T	p.E684X	GAAAATGAACCTA	.	103.0	17.0	49.0	0.0	.	198	.	.	Atlas-SNP
BCDIN3D	144233	hgsc.bcm.edu	hg19	12	50236870	50236870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	BCDIN3D,NS,carcinoma,0,1	BCDIN3D	NM_181708	exon1	c.A1C	p.M1L	CCGCCATTAGCCT	.	130.0	23.0	144.0	0.0	.	20	.	.	Atlas-SNP
PARPBP	55010	hgsc.bcm.edu	hg19	12	102569312	102569312	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	PARPBP	NM_017915	exon7	c.C873T	p.G291G	TAAAGGCCAAAAC	.	166.0	52.0	105.0	0.0	.	40	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35883674	35883674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	NBEA	NM_015678	exon36	c.A5848T	p.N1950Y	TGGCAAAACTCTA	.	174.0	40.0	132.0	0.0	.	340	.	.	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	hg19	13	110835413	110835413	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	COL4A1	NM_001845	exon28	c.G2022C	p.R674S	GCCTGGCCTTCCT	.	71.0	16.0	88.0	0.0	.	372	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102472421	102472421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	DYNC1H1	NM_001376	exon27	c.A5630G	p.D1877G	TTCAGGACAAACT	.	43.0	18.0	65.0	0.0	.	395	.	.	Atlas-SNP
HCN4	10021	hgsc.bcm.edu	hg19	15	73635757	73635757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	HCN4,colon,carcinoma,0,1	HCN4	NM_005477	exon2	c.G1178A	p.R393H	ATGAGGCGGGAGA	.	148.0	66.0	78.0	0.0	.	150	.	.	Atlas-SNP
FAM86A	196483	hgsc.bcm.edu	hg19	16	5140112	5140112	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	FAM86A,NS,neuroblastoma,0,1	FAM86A	NM_201400	exon6	c.T715A	p.F239I	GCTGGAAGGCAGA	.	10.0	3.0	10.0	0.0	.	32	.	.	Atlas-SNP
RLTPR	146206	hgsc.bcm.edu	hg19	16	67688114	67688114	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	RLTPR	NM_001013838	exon30	c.G3183A	p.E1061E	CGTGGAGGAATTC	.	43.0	15.0	67.0	0.0	.	124	.	.	Atlas-SNP
OR3A1	4994	hgsc.bcm.edu	hg19	17	3194961	3194961	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	OR3A1	NM_002550	exon1	c.A916T	p.R306W	GCATCCTCCAGAT	.	57.0	12.0	42.0	0.0	.	46	.	.	Atlas-SNP
HOXB6	3216	hgsc.bcm.edu	hg19	17	46675276	46675276	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	HOXB6	NM_018952	exon3	c.C237T	p.A79A	GTAGAAGGCCGGC	.	122.0	70.0	148.0	0.0	.	13	.	.	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	hg19	19	17014374	17014374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	CPAMD8	NM_015692	exon34	c.G4608T	p.M1536I	CACCTGCATCAGG	.	113.0	26.0	128.0	0.0	.	192	.	.	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	hg19	19	21299919	21299919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	ZNF714	NM_182515	exon5	c.A449G	p.D150G	AATGTGATGAATC	.	250.0	41.0	164.0	0.0	.	121	.	.	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	hg19	19	21299920	21299920	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	ZNF714	NM_182515	exon5	c.T450C	p.D150D	ATGTGATGAATCA	.	250.0	41.0	168.0	0.0	.	121	.	.	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	hg19	19	21299921	21299921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	ZNF714	NM_182515	exon5	c.G451A	p.E151K	TGTGATGAATCAT	.	252.0	41.0	169.0	0.0	.	121	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50713649	50713649	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	MYH14	NM_001077186	exon2	c.C27T	p.P9P	GGTGCCCGGGCGG	.	56.0	11.0	154.0	0.0	.	261	.	.	Atlas-SNP
KLK1	3816	hgsc.bcm.edu	hg19	19	51322506	51322506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	KLK1	NM_002257	exon5	c.G733A	p.V245I	CTCTGACGGCGAC	.	96.0	13.0	75.0	0.0	.	27	.	.	Atlas-SNP
LILRA3	11026	hgsc.bcm.edu	hg19	19	54802575	54802575	+	Missense_Mutation	SNP	C	C	G	rs200980681		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	LILRA3	NM_006865	exon5	c.G866C	p.R289P	TAGGAGCGGCTCA	.	10.0	5.0	8.0	0.0	.	65	.	C|0.999;G|0.001	Atlas-SNP
TFAP2C	7022	hgsc.bcm.edu	hg19	20	55209229	55209229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	TFAP2C	NM_003222	exon5	c.G827T	p.R276L	GAGGCCGGTCCTT	.	94.0	4.0	94.0	0.0	.	51	.	.	Atlas-SNP
MORC2	22880	hgsc.bcm.edu	hg19	22	31342353	31342353	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	MORC2	NM_014941	exon7	c.T215G	p.F72C	TCATGAAACGTGC	.	150.0	42.0	52.0	0.0	.	78	.	.	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	hg19	22	50727540	50727540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	PLXNB2	NM_012401	exon4	c.A1100G	p.E367G	AGGTGCTCCGAGC	.	47.0	15.0	51.0	0.0	.	172	.	.	Atlas-SNP
NLGN4X	57502	hgsc.bcm.edu	hg19	X	5821285	5821285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	NLGN4X	NM_181332	exon5	c.C1434A	p.S478R	CATTTCGCTTTGG	.	331.0	95.0	352.0	0.0	.	191	.	.	Atlas-SNP
RPS6KA6	27330	hgsc.bcm.edu	hg19	X	83359580	83359580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	RPS6KA6	NM_014496	exon17	c.G1541A	p.C514Y	GAGAAACATTTTT	.	329.0	46.0	143.0	0.0	.	116	.	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	hg19	4	166986896	166986900	+	Frame_Shift_Del	DEL	GCAAA	GCAAA	-	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	GCAAA	GCAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	TLL1	NM_012464	exon16	c.2068_2072del	p.690_691del	.	.	89.0	18.0	54.0	0.0	.	194	.	.	Atlas-Indel,Pindel
SLC38A6	145389	hgsc.bcm.edu	hg19	14	61550366	61550378	+	Frame_Shift_Del	DEL	GGAGAACCAAACG	GGAGAACCAAACG	-	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	GGAGAACCAAACG	GGAGAACCAAACG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	SLC38A6	NM_001172702	exon17	c.1501_1513del	p.501_505del	.	.	60.0	12.0	49.0	0.0	.	87	.	.	Atlas-Indel,Pindel
KANSL2	54934	hgsc.bcm.edu	hg19	12	49075410	49075430	+	Frame_Shift_Del	DEL	GTTCATAACCAAAACCTGCGG	GTTCATAACCAAAACCTGCGG	-	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	GTTCATAACCAAAACCTGCGG	GTTCATAACCAAAACCTGCGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	.	NM_017822	wholegene	.	.	.	.	81.0	17.0	80.0	0.0	.	.	.	.	Atlas-Indel,Pindel
TRIM13	10206	hgsc.bcm.edu	hg19	13	50586334	50586335	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	TRIM13	NM_001007278	exon4	c.267_268insA	p.K89fs	.	.	82.0	19.0	48.0	0.0	.	30	.	.	Atlas-Indel,Pindel
SIRT6	51548	hgsc.bcm.edu	hg19	19	4174810	4174811	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	SIRT6	NM_016539	exon8	c.872_873insC	p.R291fs	.	.	27.0	10.0	35.0	0.0	.	16	.	.	Atlas-INDEL
GRN	2896	hgsc.bcm.edu	hg19	17	42429084	42429086	+	In_Frame_Del	DEL	ATA	ATA	-	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	ATA	ATA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	GRN	NM_002087	exon10	c.1099_1101del	p.367_367del	.	.	74.0	12.0	43.0	0.0	.	51	.	.	Atlas-Indel,Pindel
GMPR2	51292	hgsc.bcm.edu	hg19	14	24707793	24707798	+	Splice_Site	DEL	TTTAAG	TTTAAG	-	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	TTTAAG	TTTAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	GMPR2	.	.	.	.	.	.	148.0	41.0	99.0	0.0	.	37	.	.	Atlas-Indel,Pindel
HIPK2	28996	hgsc.bcm.edu	hg19	7	139311420	139311425	+	In_Frame_Del	DEL	TTCTCT	TTCTCT	-	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	TTCTCT	TTCTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	HIPK2	NM_022740	exon6	c.1542_1547del	p.514_516del	.	.	139.0	19.0	51.0	0.0	.	192	.	.	Atlas-Indel,Pindel
BAP1	8314	hgsc.bcm.edu	hg19	3	52439158	52439167	+	Frame_Shift_Del	DEL	CTAGAAAGGC	CTAGAAAGGC	-	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	CTAGAAAGGC	CTAGAAAGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	BAP1	NM_004656	exon11	c.1076_1085del	p.359_362del	.	.	45.0	13.0	83.0	0.0	.	371	.	.	Atlas-Indel,Pindel
ATG14	22863	hgsc.bcm.edu	hg19	14	55878482	55878483	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Y-A9H2-01A-12D-A382-10	TCGA-2Y-A9H2-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d34332a4-c52c-428f-bef7-95432afb6d1d	466f3a9c-b339-460c-8d5f-563852b7b498	.	ATG14	NM_014924	exon1	c.59_60insC	p.R20fs	.	.	99.0	44.0	204.0	0.0	.	36	.	.	Atlas-Indel,Pindel