Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CAMTA1 23261 hgsc.bcm.edu hg19 1 7725058 7725058 + Silent SNP A A G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . CAMTA1 NM_015215 exon9 c.A2451G p.A817A CCAGGCAGAGATG . 114.0 46.0 172.0 0.0 . 226 . . Atlas-SNP SFPQ 6421 hgsc.bcm.edu hg19 1 35653652 35653652 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . SFPQ NM_005066 exon7 c.G1737A p.M579I ACGAATCATCATC . 63.0 29.0 48.0 0.0 . 51 . . Atlas-SNP PSMB2 5690 hgsc.bcm.edu hg19 1 36074978 36074978 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . PSMB2 NM_002794 exon4 c.G317A p.G106D TCATAGCCAGCCA . 191.0 13.0 164.0 0.0 . 9 . . Atlas-SNP PRCC 5546 hgsc.bcm.edu hg19 1 156764567 156764567 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . PRCC NM_005973 exon5 c.G1290T p.L430F GTCATTGACAGAA . 205.0 54.0 101.0 0.0 . 39 . . Atlas-SNP PTPRC 5788 hgsc.bcm.edu hg19 1 198700795 198700795 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . PTPRC NM_002838 exon18 c.G1914T p.L638F TATTTTGTTGGAA . 208.0 130.0 82.0 0.0 . 229 . . Atlas-SNP FAM177B 400823 hgsc.bcm.edu hg19 1 222922851 222922851 + Missense_Mutation SNP A A C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . FAM177B NM_207468 exon5 c.A286C p.T96P GGTCTTACTCAAC . 91.0 49.0 36.0 0.0 . 19 . . Atlas-SNP ZNF638 27332 hgsc.bcm.edu hg19 2 71649966 71649966 + Missense_Mutation SNP A A C rs61739715 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . ZNF638 NM_014497 exon22 c.A3322C p.I1108L AGTCCAATTGATG . 139.0 62.0 91.0 0.0 . 179 . A|0.996;G|0.004 Atlas-SNP MTHFD2 10797 hgsc.bcm.edu hg19 2 74438882 74438882 + Missense_Mutation SNP A A C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . MTHFD2 NM_006636 exon7 c.A778C p.I260L AATCTGATCACAG . 63.0 29.0 40.0 0.0 . 43 . . Atlas-SNP KANSL3 55683 hgsc.bcm.edu hg19 2 97302698 97302698 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . . NM_001115016 exon2 c.A175G p.M59V AGAGCATGCGGGT . 185.0 75.0 210.0 0.0 . . . . Atlas-SNP MARCH7 64844 hgsc.bcm.edu hg19 2 160605311 160605311 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . MARCH7 NM_022826 exon5 c.G1510A p.V504I ATCACAGTAGATA . 90.0 37.0 69.0 0.0 . 48 . . Atlas-SNP PLA2R1 22925 hgsc.bcm.edu hg19 2 160862301 160862301 + Missense_Mutation SNP T T G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . PLA2R1 NM_001195641 exon11 c.A1696C p.S566R CACTACTGATCAA . 117.0 58.0 105.0 0.0 . 153 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215838711 215838711 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . ABCA12 NM_173076 exon36 c.A5524T p.T1842S AATTAGTGATGGG . 93.0 41.0 47.0 0.0 . 368 . . Atlas-SNP ECEL1 9427 hgsc.bcm.edu hg19 2 233346546 233346546 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . ECEL1 NM_004826 exon13 c.G1810A p.G604R TGCCCCCGTAGTT . 177.0 64.0 252.0 0.0 . 73 . . Atlas-SNP ING5 84289 hgsc.bcm.edu hg19 2 242662639 242662639 + Nonsense_Mutation SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . ING5 NM_032329 exon7 c.G633A p.W211X TGAGTGGTTTCAC . 140.0 56.0 181.0 0.0 . 14 . . Atlas-SNP DPPA4 55211 hgsc.bcm.edu hg19 3 109049584 109049584 + Missense_Mutation SNP T T G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . DPPA4 NM_018189 exon5 c.A466C p.T156P GGGACGTTTCCCC . 202.0 93.0 217.0 0.0 . 56 . . Atlas-SNP FAM131A 131408 hgsc.bcm.edu hg19 3 184062581 184062581 + Silent SNP G G T rs145026576 bycluster;by1000genomes;alternate_allele TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 FAM131A_ENST00000383847,NS,carcinoma,0,2 FAM131A NM_144635 exon6 c.G924T p.S308S CAACTCGCCCCTC . 80.0 36.0 115.0 0.0 . 37 . G|1.000;A|0.000 Atlas-SNP LMLN 89782 hgsc.bcm.edu hg19 3 197765494 197765494 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . LMLN NM_001136049 exon17 c.C2035G p.L679V GGCAATCTGTTTC . 157.0 71.0 73.0 0.0 . 53 . . Atlas-SNP SH3TC1 54436 hgsc.bcm.edu hg19 4 8220023 8220023 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . SH3TC1 NM_018986 exon8 c.C865G p.P289A CAGGACCCCATCG . 77.0 26.0 117.0 0.0 . 105 . . Atlas-SNP OR2V2 285659 hgsc.bcm.edu hg19 5 180582886 180582886 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . OR2V2 NM_206880 exon1 c.A944G p.H315R GCCAGCACTGAAC . 81.0 27.0 84.0 0.0 . 56 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 64499079 64499079 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . EYS NM_001142800 exon38 c.A7450G p.N2484D TGCCATTGAGCAG . 76.0 31.0 51.0 0.0 . 527 . . Atlas-SNP HEATR2 54919 hgsc.bcm.edu hg19 7 794224 794224 + Splice_Site SNP A A G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . HEATR2 NM_017802 exon5 c.1025-2A>G . CGTTCCAGAGCGC . 184.0 71.0 238.0 0.0 . 62 . . Atlas-SNP SDK1 221935 hgsc.bcm.edu hg19 7 4014141 4014141 + Missense_Mutation SNP G G C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . SDK1 NM_152744 exon13 c.G1958C p.G653A CTGAAGGAGGGAA . 112.0 52.0 99.0 0.0 . 361 . . Atlas-SNP AP5Z1 9907 hgsc.bcm.edu hg19 7 4825922 4825922 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . . NM_014855 exon10 c.C1174A p.L392M CAGCACCTGTTCA . 91.0 45.0 131.0 0.0 . . . . Atlas-SNP COBL 23242 hgsc.bcm.edu hg19 7 51096609 51096609 + Silent SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 COBL,bladder,carcinoma,0,1 COBL NM_015198 exon10 c.C2184T p.T728T GGCTCCGGTGGAG . 110.0 45.0 125.0 0.0 . 167 . . Atlas-SNP GNAT3 346562 hgsc.bcm.edu hg19 7 80103624 80103624 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . GNAT3 NM_001102386 exon5 c.G533A p.R178Q TTCACTCGAGAAT . 60.0 16.0 44.0 0.0 . 65 . . Atlas-SNP DYNC1I1 1780 hgsc.bcm.edu hg19 7 95665003 95665003 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . DYNC1I1 NM_004411 exon13 c.G1354A p.V452I GGAGACGTCAATA . 149.0 61.0 64.0 0.0 . 111 . . Atlas-SNP CPA1 1357 hgsc.bcm.edu hg19 7 130020953 130020953 + Missense_Mutation SNP G G C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . CPA1 NM_001868 exon2 c.G80C p.R27P TGCTCCGAATCTC . 266.0 96.0 356.0 0.0 . 73 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3165891 3165891 + Silent SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . CSMD1 NM_033225 exon24 c.C3766T p.L1256L AGGTCAGGGTGTT . 39.0 23.0 61.0 0.0 . 1469 . . Atlas-SNP ADAM7 8756 hgsc.bcm.edu hg19 8 24349552 24349552 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . ADAM7 NM_003817 exon14 c.A1493G p.Y498C AAGGCTACTGTTT . 107.0 43.0 58.0 0.0 . 165 . . Atlas-SNP UNC13B 10497 hgsc.bcm.edu hg19 9 35295866 35295866 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . UNC13B NM_006377 exon8 c.G700A p.D234N TCCCGGGACTCTT . 109.0 36.0 131.0 0.0 . 153 . . Atlas-SNP NUP214 8021 hgsc.bcm.edu hg19 9 134074363 134074363 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . NUP214 NM_005085 exon29 c.A5482G p.T1828A ACCACAACAGCAG . 86.0 35.0 106.0 0.0 . 166 . . Atlas-SNP CAMSAP1 157922 hgsc.bcm.edu hg19 9 138774767 138774767 + Silent SNP T T C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . CAMSAP1 NM_015447 exon2 c.A318G p.G106G CTGGTGTCCCTGT . 54.0 26.0 74.0 0.0 . 142 . . Atlas-SNP C9orf172 389813 hgsc.bcm.edu hg19 9 139741196 139741196 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . C9orf172 NM_001080482 exon1 c.C2330G p.P777R TATCCCCCACCTA . 75.0 17.0 85.0 0.0 . 23 . . Atlas-SNP SLC39A12 221074 hgsc.bcm.edu hg19 10 18250708 18250708 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . SLC39A12 NM_152725 exon3 c.G460A p.E154K CAGGATGAAGATT . 192.0 83.0 126.0 0.0 . 181 . . Atlas-SNP SVIL 6840 hgsc.bcm.edu hg19 10 29782297 29782297 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . SVIL NM_021738 exon21 c.C3865T p.L1289F CAGTGAGCACCGT . 111.0 36.0 134.0 0.0 . 226 . . Atlas-SNP ANKRD30A 91074 hgsc.bcm.edu hg19 10 37505130 37505130 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . ANKRD30A NM_052997 exon32 c.T2723A p.I908N CAAAAATCTTGGA . 400.0 157.0 158.0 0.0 . 448 . . Atlas-SNP RBP3 5949 hgsc.bcm.edu hg19 10 48388858 48388858 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . RBP3 NM_002900 exon1 c.C2020T p.R674C CTGTGCGGTAGGC . 92.0 45.0 129.0 0.0 . 152 . . Atlas-SNP VDAC2 7417 hgsc.bcm.edu hg19 10 76980582 76980582 + Silent SNP A A G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . VDAC2 NM_001184783 exon8 c.A483G p.G161G TGCTGGACCTGCA . 262.0 114.0 196.0 0.0 . 27 . . Atlas-SNP PDZD8 118987 hgsc.bcm.edu hg19 10 119133943 119133943 + Nonsense_Mutation SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . PDZD8 NM_173791 exon1 c.C796T p.Q266X TGAGCTGGGGCAT . 117.0 53.0 143.0 0.0 . 85 . . Atlas-SNP TRIM66 9866 hgsc.bcm.edu hg19 11 8662363 8662363 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . TRIM66 NM_014818 exon9 c.G1124A p.C375Y GGGCTGCAGGCCA . 52.0 25.0 84.0 0.0 . 45 . . Atlas-SNP EEF1G 1937 hgsc.bcm.edu hg19 11 62334458 62334458 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . EEF1G NM_001404 exon7 c.C677T p.P226L TTTTTAGGTTGGG . 95.0 30.0 104.0 0.0 . 33 . . Atlas-SNP CTSC 1075 hgsc.bcm.edu hg19 11 88061352 88061352 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . CTSC NM_148170 exon3 c.T331A p.F111I TGATAAAATCAGT . 99.0 42.0 75.0 0.0 . 46 . . Atlas-SNP GRAMD1B 57476 hgsc.bcm.edu hg19 11 123471213 123471213 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . GRAMD1B NM_020716 exon7 c.A578G p.Y193C GGACATATATGAT . 69.0 18.0 38.0 0.0 . 122 . . Atlas-SNP TNFRSF1A 7132 hgsc.bcm.edu hg19 12 6438604 6438604 + Silent SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . TNFRSF1A NM_001065 exon10 c.C1242T p.R414R GGCCTCGCGCCGC . 299.0 126.0 489.0 1.0 . 39 . . Atlas-SNP CNTN1 1272 hgsc.bcm.edu hg19 12 41421673 41421673 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . CNTN1 NM_001843 exon22 c.C2725G p.P909A CAGCCTCCAAGGA . 91.0 44.0 50.0 0.0 . 207 . . Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78579428 78579428 + Missense_Mutation SNP C C A rs201844408 alternate_allele TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . NAV3 NM_014903 exon30 c.C5674A p.R1892S GATGGCCGCAGTG . 239.0 155.0 50.0 0.0 . 506 . . Atlas-SNP PLEKHG7 440107 hgsc.bcm.edu hg19 12 93147989 93147989 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . PLEKHG7 NM_001004330 exon6 c.G439A p.A147T GACTCTGCTGAGA . 224.0 47.0 67.0 0.0 . 38 . . Atlas-SNP MYO1H 283446 hgsc.bcm.edu hg19 12 109853348 109853348 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . MYO1H NM_001101421 exon14 c.C1472T p.P491L CTGGTCCAAAGGG . 144.0 53.0 43.0 0.0 . 98 . . Atlas-SNP CSNK1A1L 122011 hgsc.bcm.edu hg19 13 37679130 37679130 + Silent SNP T T C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . CSNK1A1L NM_145203 exon1 c.A264G p.L88L CATGACTAGCACA . 118.0 47.0 75.0 0.0 . 69 . . Atlas-SNP SLAIN1 122060 hgsc.bcm.edu hg19 13 78320728 78320728 + Silent SNP A A G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . SLAIN1 NM_001242868 exon4 c.A996G p.K332K AAAAAAAGGGACA . 115.0 5.0 72.0 0.0 . 43 . . Atlas-SNP MYO16 23026 hgsc.bcm.edu hg19 13 109792761 109792761 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 MYO16,lower_third,carcinoma,0,1 MYO16 NM_001198950 exon32 c.G4201T p.A1401S GCGGGCGCCCCGG . 50.0 17.0 79.0 0.0 . 285 . . Atlas-SNP DAAM1 23002 hgsc.bcm.edu hg19 14 59730340 59730340 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . DAAM1 NM_001270520 exon2 c.C145T p.P49S ATGCCCCCTGTGG . 123.0 56.0 135.0 0.0 . 95 . . Atlas-SNP KCNH5 27133 hgsc.bcm.edu hg19 14 63473124 63473124 + Silent SNP G G A rs373008977 TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . KCNH5 NM_172375 exon3 c.C264T p.Y88Y TGATTCGTAGTTG . 62.0 19.0 50.0 0.0 . 320 . . Atlas-SNP LTK 4058 hgsc.bcm.edu hg19 15 41796631 41796631 + Splice_Site SNP C C G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . LTK NM_002344 exon20 c.2256-1G>C . CGGTACCTGGGGA . 72.0 26.0 82.0 0.0 . 117 . . Atlas-SNP SLC24A5 283652 hgsc.bcm.edu hg19 15 48429129 48429129 + Silent SNP A A C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . SLC24A5 NM_205850 exon6 c.A840C p.I280I CTCTATAAGTTTA . 104.0 35.0 58.0 0.0 . 64 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48779389 48779389 + Nonsense_Mutation SNP C C A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . FBN1 NM_000138 exon29 c.G3472T p.E1158X CACATTCATTGAT . 76.0 30.0 65.0 0.0 . 310 . . Atlas-SNP DPP8 54878 hgsc.bcm.edu hg19 15 65759147 65759147 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . DPP8 NM_197960 exon15 c.G1742C p.C581S AAGTCACAGTGCT . 82.0 34.0 65.0 0.0 . 78 . . Atlas-SNP HCN4 10021 hgsc.bcm.edu hg19 15 73617688 73617688 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . HCN4 NM_005477 exon5 c.T1688A p.M563K TCGAACATCTTGC . 90.0 33.0 151.0 0.0 . 150 . . Atlas-SNP APOBR 55911 hgsc.bcm.edu hg19 16 28506821 28506821 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . APOBR NM_018690 exon2 c.C459A p.S153R CAGGAGCGGCCAA . 266.0 106.0 399.0 0.0 . 89 . . Atlas-SNP MYH2 4620 hgsc.bcm.edu hg19 17 10443978 10443978 + Missense_Mutation SNP G G C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . MYH2 NM_017534 exon11 c.C941G p.P314R ACAAATGGGTAAT . 40.0 33.0 82.0 0.0 . 390 . . Atlas-SNP SLC13A2 9058 hgsc.bcm.edu hg19 17 26822770 26822770 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . SLC13A2 NM_001145975 exon10 c.C1553T p.T518I TGGCCACCTTCAC . 34.0 8.0 39.0 0.0 . 125 . . Atlas-SNP ABCA9 10350 hgsc.bcm.edu hg19 17 67023238 67023238 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . ABCA9 NM_080283 exon15 c.A1929T p.E643D AGTCGGTTCATCC . 96.0 12.0 41.0 0.0 . 192 . . Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 7955137 7955137 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . PTPRM NM_001105244 exon7 c.C857T p.A286V CTATTGCCCCACC . 100.0 28.0 94.0 0.0 . 185 . . Atlas-SNP TWSG1 57045 hgsc.bcm.edu hg19 18 9399524 9399524 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . TWSG1 NM_020648 exon5 c.A671T p.X224L TGTTTTAAAGAAG . 52.0 18.0 61.0 0.0 . 23 . . Atlas-SNP CHMP1B 57132 hgsc.bcm.edu hg19 18 11851773 11851773 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . CHMP1B NM_020412 exon1 c.T263C p.V88A GCAAGGTGACCAA . 40.0 23.0 63.0 0.0 . 16 . . Atlas-SNP DAZAP1 26528 hgsc.bcm.edu hg19 19 1429964 1429964 + Splice_Site SNP A A C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . DAZAP1 NM_018959 exon9 c.701-2A>C . TTATCTAGGAATG . 79.0 25.0 120.0 0.0 . 52 . . Atlas-SNP ZNF493 284443 hgsc.bcm.edu hg19 19 21606246 21606246 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . ZNF493 NM_001076678 exon4 c.A785G p.Q262R CTGGACAGAAACC . 211.0 80.0 108.0 0.0 . 178 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38958307 38958307 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 RYR1,acral,malignant_melanoma,0,1 RYR1 NM_001042723 exon25 c.C3236A p.S1079Y AGAAATCCTATAC . 89.0 39.0 131.0 0.0 . 708 . . Atlas-SNP NCOA6 23054 hgsc.bcm.edu hg19 20 33328358 33328358 + Missense_Mutation SNP G G C novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . NCOA6 NM_014071 exon11 c.C5702G p.A1901G GGTCCTGCTGAGG . 58.0 22.0 43.0 0.0 . 219 . . Atlas-SNP SNRPD3 6634 hgsc.bcm.edu hg19 22 24967931 24967931 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . SNRPD3 NM_004175 exon4 c.C367A p.Q123K ATCTTTCAAAAGC . 189.0 79.0 225.0 0.0 . 12 . . Atlas-SNP KLHDC7B 113730 hgsc.bcm.edu hg19 22 50987118 50987118 + Nonsense_Mutation SNP A A T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . KLHDC7B NM_138433 exon1 c.A523T p.K175X ACGGAAAAGCAGG . 55.0 45.0 103.0 0.0 . 39 . . Atlas-SNP ASMT 438 hgsc.bcm.edu hg19 X 1742043 1742043 + Silent SNP C C T novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . ASMT NM_001171039 exon2 c.C81T p.A27A CTTCGCCGCCTGC . 129.0 112.0 213.0 0.0 . 31 . . Atlas-SNP AP3M2 10947 hgsc.bcm.edu hg19 8 42015551 42015558 + Frame_Shift_Del DEL ATTGGCTA ATTGGCTA - novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 ATTGGCTA ATTGGCTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . AP3M2 NM_001134296 exon4 c.365_372del p.122_124del . . 91.0 32.0 105.0 0.0 . 41 . . Atlas-Indel,Pindel FAM114A1 92689 hgsc.bcm.edu hg19 4 38933200 38933201 + Frame_Shift_Ins INS - - A novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . FAM114A1 NM_138389 exon11 c.1290_1291insA p.D430fs . . 206.0 78.0 175.0 0.0 . 42 . . Atlas-Indel,Pindel SRMS 6725 hgsc.bcm.edu hg19 20 62178723 62178724 + Frame_Shift_Ins INS - - G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . SRMS NM_080823 exon1 c.94_95insC p.G32fs . . 160.0 10.0 202.0 0.0 . 48 . . Atlas-INDEL COL16A1 1307 hgsc.bcm.edu hg19 1 32162681 32162682 + Frame_Shift_Ins INS - - G novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . COL16A1 NM_001856 exon8 c.747_748insC p.P249fs . . 76.0 25.0 88.0 0.0 . 137 . . Atlas-Indel,Pindel CNTN2 6900 hgsc.bcm.edu hg19 1 205027137 205027137 + Frame_Shift_Del DEL G G - novel TCGA-2Y-A9H0-01A-11D-A382-10 TCGA-2Y-A9H0-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 87054fed-dd7d-4c27-af8f-4a559cca7800 d7df8ad9-70a5-4728-874c-8a1cf595ed35 . CNTN2 NM_005076 exon3 c.158delC p.T53fs . . 260.0 173.0 210.0 0.0 . 116 . . Atlas-Indel,Pindel