Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
EPB41	2035	hgsc.bcm.edu	hg19	1	29314060	29314060	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	EPB41	NM_203343	exon2	c.A111G	p.E37E	GGAGGAATCTTGT	.	475.0	135.0	333.0	0.0	.	118	.	.	Atlas-SNP
CCDC24	149473	hgsc.bcm.edu	hg19	1	44457670	44457670	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	CCDC24	NM_152499	exon2	c.G120A	p.R40R	GCTGCGGGCGGAG	.	128.0	50.0	124.0	0.0	.	22	.	.	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	hg19	1	91841093	91841093	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	HFM1	NM_001017975	exon12	c.C1587A	p.P529P	AAGTGTGGGTTTC	.	290.0	56.0	198.0	0.0	.	188	.	.	Atlas-SNP
KCNA10	3744	hgsc.bcm.edu	hg19	1	111060812	111060812	+	Missense_Mutation	SNP	G	G	T	rs150505266	alternate_allele	TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	KCNA10,colon,carcinoma,+2,2	KCNA10	NM_005549	exon1	c.C598A	p.R200S	ACTGACGGTGGAT	.	181.0	53.0	176.0	0.0	.	92	.	G|1.000;A|0.000	Atlas-SNP
CD5L	922	hgsc.bcm.edu	hg19	1	157803136	157803136	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	CD5L	NM_005894	exon5	c.C885T	p.F295F	GTCTCTGAAGGAG	.	171.0	83.0	114.0	0.0	.	112	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245847634	245847634	+	Silent	SNP	G	G	T	rs148065443	bycluster;by1000genomes;alternate_allele	TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	KIF26B	NM_018012	exon11	c.G2358T	p.A786A	CTACGCGGAGACC	.	81.0	4.0	92.0	0.0	.	343	.	G|1.000;A|0.000	Atlas-SNP
VPS54	51542	hgsc.bcm.edu	hg19	2	64189527	64189527	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	VPS54	NM_016516	exon7	c.T675G	p.S225S	ACGTAGAGAGATC	.	112.0	56.0	80.0	0.0	.	57	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71740979	71740979	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	DYSF_ENST00000410020,NS,carcinoma,0,2	DYSF	NM_001130982	exon7	c.C687A	p.Y229X	CCACTACCCCGGG	.	334.0	154.0	193.0	2.0	.	536	.	.	Atlas-SNP
CCT7	10574	hgsc.bcm.edu	hg19	2	73479950	73479950	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	CCT7	NM_006429	exon12	c.A1593T	p.T531T	TCCCACAGCAGCA	.	208.0	91.0	169.0	0.0	.	60	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	231.0	13.0	139.0	0.0	.	384	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613065	73613065	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	ALMS1	NM_015120	exon1	c.G69A	p.E23E	GGAGGAGGAGGAA	.	595.0	41.0	389.0	0.0	.	384	.	.	Atlas-SNP
CYTIP	9595	hgsc.bcm.edu	hg19	2	158272222	158272222	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	CYTIP	NM_004288	exon8	c.T1047C	p.H349H	AGCACGATGAAGG	.	489.0	233.0	348.0	0.0	.	45	.	.	Atlas-SNP
STAT4	6775	hgsc.bcm.edu	hg19	2	192012877	192012877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	STAT4	NM_001243835	exon2	c.T53A	p.V18E	TGATCCACCTGCT	.	166.0	76.0	100.0	0.0	.	85	.	.	Atlas-SNP
NGEF	25791	hgsc.bcm.edu	hg19	2	233759597	233759597	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	NGEF	NM_019850	exon6	c.G858A	p.A286A	GTAGGACGCCTCG	.	153.0	32.0	98.0	0.0	.	198	.	.	Atlas-SNP
PER2	8864	hgsc.bcm.edu	hg19	2	239161961	239161961	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	PER2	NM_022817	exon19	c.G2703A	p.A901A	GACAGGCGCCAAA	.	161.0	12.0	125.0	0.0	.	85	.	.	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	hg19	3	12845054	12845054	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	CAND2	NM_012298	exon2	c.G136T	p.E46X	GACAGCGAGCGCA	.	87.0	4.0	50.0	0.0	.	138	.	.	Atlas-SNP
CD80	941	hgsc.bcm.edu	hg19	3	119263513	119263513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	CD80	NM_005191	exon3	c.T302C	p.I101T	ATCACAATGGAGA	.	117.0	49.0	119.0	0.0	.	35	.	.	Atlas-SNP
GPR156	165829	hgsc.bcm.edu	hg19	3	119886025	119886025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	GPR156	NM_153002	exon9	c.T2299G	p.F767V	TCTGGAAGCAGAT	.	103.0	47.0	110.0	0.0	.	85	.	.	Atlas-SNP
OTOL1	131149	hgsc.bcm.edu	hg19	3	161221396	161221396	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	OTOL1	NM_001080440	exon4	c.A1100T	p.Y367F	TTCTCTATAATGA	.	87.0	19.0	83.0	0.0	.	63	.	.	Atlas-SNP
MARCH11	441061	hgsc.bcm.edu	hg19	5	16067614	16067614	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	MARCH11,rectum,carcinoma,0,1	MARCH11	NM_001102562	exon4	c.C1175A	p.S392X	TCCCCCGAGCTGT	.	95.0	34.0	59.0	0.0	.	50	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128977574	128977574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	ADAMTS19	NM_133638	exon11	c.G1775T	p.W592L	GATTATGGTGCAA	.	123.0	41.0	90.0	0.0	.	216	.	.	Atlas-SNP
ACSL6	23305	hgsc.bcm.edu	hg19	5	131310509	131310509	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	ACSL6	NM_015256	exon11	c.G1010C	p.C337S	TCCGCACAAGTGG	.	239.0	119.0	259.0	0.0	.	169	.	.	Atlas-SNP
H2AFY	9555	hgsc.bcm.edu	hg19	5	134705791	134705791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	H2AFY	NM_138610	exon3	c.A214G	p.K72E	CCTTCTTGTTGTC	.	42.0	19.0	53.0	0.0	.	61	.	.	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	hg19	5	141060026	141060026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	ARAP3,NS,NS,0,1	ARAP3	NM_022481	exon2	c.G28T	p.A10S	ACACAGCGATGTC	.	17.0	10.0	29.0	0.0	.	139	.	.	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	hg19	6	46657236	46657236	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	TDRD6	NM_001168359	exon1	c.A1371G	p.P457P	GGAACCAGAAACA	.	59.0	29.0	32.0	0.0	.	205	.	.	Atlas-SNP
TNFRSF21	27242	hgsc.bcm.edu	hg19	6	47200685	47200685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	TNFRSF21	NM_014452	exon6	c.A1784G	p.D595G	TGCAAGTCACAGG	.	120.0	26.0	80.0	0.0	.	61	.	.	Atlas-SNP
PTP4A1	7803	hgsc.bcm.edu	hg19	6	64289208	64289208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	PTP4A1	NM_003463	exon5	c.T376C	p.Y126H	ATGAAATACGAAG	.	515.0	35.0	303.0	0.0	.	13	.	.	Atlas-SNP
SIM1	6492	hgsc.bcm.edu	hg19	6	100896042	100896042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	SIM1,NS,lymphoid_neoplasm,0,1	SIM1	NM_005068	exon7	c.T830G	p.L277R	CAGCGCAGGTGGA	.	48.0	16.0	36.0	0.0	.	173	.	.	Atlas-SNP
GRIK2	2898	hgsc.bcm.edu	hg19	6	102516350	102516350	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	GRIK2	NM_021956	exon16	c.C2691T	p.N897N	ATTTAACGACAGA	.	135.0	50.0	100.0	0.0	.	487	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3046528	3046528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	CSMD1	NM_033225	exon35	c.T5404C	p.C1802R	CACTGCAGGGTAC	.	84.0	25.0	99.0	0.0	.	1469	.	.	Atlas-SNP
BHLHE22	27319	hgsc.bcm.edu	hg19	8	65494023	65494023	+	Missense_Mutation	SNP	A	A	G	rs62519837	bycluster	TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	BHLHE22,extremity,malignant_melanoma,0,1	BHLHE22	NM_152414	exon1	c.A676G	p.S226G	GGCGGCAGCAGCA	.	39.0	8.0	21.0	2.0	.	21	.	G|1.000;|0.000	Atlas-SNP
TIGD5	84948	hgsc.bcm.edu	hg19	8	144680335	144680335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	TIGD5	NM_032862	exon1	c.C262A	p.L88M	GGGACGCTGCGCG	.	179.0	58.0	83.0	0.0	.	22	.	.	Atlas-SNP
SLC35D2	11046	hgsc.bcm.edu	hg19	9	99113414	99113414	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	SLC35D2	NM_007001	exon6	c.C459T	p.A153A	AATAATGGCAAAG	.	164.0	54.0	124.0	0.0	.	20	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113261434	113261434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	SVEP1	NM_153366	exon7	c.C1568T	p.T523M	CAGATCGTCCCAA	.	116.0	46.0	92.0	0.0	.	326	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26446318	26446318	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	MYO3A,caecum,carcinoma,0,2	MYO3A	NM_017433	exon26	c.G2873C	p.R958P	GTGAGCGTCAGGC	.	136.0	17.0	118.0	0.0	.	371	.	.	Atlas-SNP
KIAA1462	57608	hgsc.bcm.edu	hg19	10	30318601	30318601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	KIAA1462	NM_020848	exon3	c.G476A	p.R159K	TCTGACCTTCCTC	.	104.0	15.0	82.0	0.0	.	162	.	.	Atlas-SNP
CYP2E1	1571	hgsc.bcm.edu	hg19	10	135340964	135340964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	CYP2E1	NM_000773	exon1	c.T65C	p.M22T	TGTCCATGTGGAG	.	77.0	17.0	57.0	0.0	.	69	.	.	Atlas-SNP
GALNT18	374378	hgsc.bcm.edu	hg19	11	11394087	11394087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	.	NM_198516	exon6	c.G1067T	p.G356V	TTCTCGCCCCCGT	.	81.0	11.0	57.0	0.0	.	.	.	.	Atlas-SNP
OR5W2	390148	hgsc.bcm.edu	hg19	11	55681443	55681443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	OR5W2	NM_001001960	exon1	c.A616G	p.I206V	GTTCAATAAAACC	.	125.0	33.0	120.0	0.0	.	112	.	.	Atlas-SNP
OR5I1	10798	hgsc.bcm.edu	hg19	11	55703115	55703115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	OR5I1	NM_006637	exon1	c.A762T	p.Q254H	AGTCCCTTGGTAG	.	104.0	31.0	97.0	0.0	.	110	.	.	Atlas-SNP
TCN1	6947	hgsc.bcm.edu	hg19	11	59623355	59623355	+	Nonsense_Mutation	SNP	G	G	T	rs146250932	bycluster;byfrequency;alternate_allele	TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	TCN1,bladder,carcinoma,0,1	TCN1	NM_001062	exon6	c.C924A	p.C308X	AGAGACGCAAGAA	.	88.0	19.0	70.0	0.0	.	64	.	G|0.999;A|0.001	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62296756	62296756	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	AHNAK	NM_001620	exon5	c.A5133G	p.K1711K	GGGCATTTTCAGG	.	99.0	4.0	109.0	0.0	.	532	.	.	Atlas-SNP
TRIM77	390231	hgsc.bcm.edu	hg19	11	89450720	89450720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	.	NM_001146162	exon6	c.G1033T	p.V345L	TGGGAGGTGGATG	.	74.0	14.0	106.0	0.0	.	.	.	.	Atlas-SNP
ZC3H12C	85463	hgsc.bcm.edu	hg19	11	110035069	110035069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	ZC3H12C	NM_033390	exon6	c.A1259G	p.K420R	TAGGAAAGAAGTG	.	55.0	13.0	50.0	0.0	.	83	.	.	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133790637	133790637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	IGSF9B	NM_014987	exon18	c.G2983A	p.V995I	ACATGACGGAGCT	.	61.0	15.0	79.0	0.0	.	290	.	.	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	hg19	12	6682294	6682294	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	CHD4	NM_001273	exon38	c.C5503T	p.L1835L	TGGACAGGTGCTG	.	130.0	20.0	73.0	0.0	.	539	.	.	Atlas-SNP
NECAP1	25977	hgsc.bcm.edu	hg19	12	8245601	8245601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	NECAP1	NM_015509	exon6	c.A626G	p.H209R	GCAATCATGTCAC	.	128.0	63.0	98.0	0.0	.	21	.	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	hg19	12	80746176	80746176	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	OTOGL	NM_173591	exon44	c.G5340C	p.K1780N	CAACAAGTTTGAT	.	72.0	6.0	63.0	0.0	.	235	.	.	Atlas-SNP
PAH	5053	hgsc.bcm.edu	hg19	12	103249042	103249042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	PAH	NM_000277	exon6	c.C578T	p.T193I	TTCAGAGTCTTGA	.	90.0	47.0	65.0	0.0	.	77	.	.	Atlas-SNP
STOML3	161003	hgsc.bcm.edu	hg19	13	39542580	39542580	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	STOML3	NM_145286	exon6	c.C608G	p.S203C	GCCATGGATCTCT	.	50.0	24.0	52.0	0.0	.	47	.	.	Atlas-SNP
SYT16	83851	hgsc.bcm.edu	hg19	14	62551004	62551004	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	SYT16	NM_031914	exon5	c.C1525T	p.L509L	CCAGAGCTGTTGG	.	74.0	44.0	93.0	0.0	.	144	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	hg19	14	80158522	80158522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	NRXN3	NM_001105250	exon4	c.C608T	p.T203I	GCAACACTGATAA	.	69.0	12.0	70.0	0.0	.	342	.	.	Atlas-SNP
BAG5	9529	hgsc.bcm.edu	hg19	14	104026516	104026516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	BAG5	NM_001015049	exon2	c.G1109A	p.R370Q	GCTTCCCGGATGC	.	99.0	35.0	91.0	0.0	.	47	.	.	Atlas-SNP
BAG5	9529	hgsc.bcm.edu	hg19	14	104028275	104028275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	BAG5	NM_001015049	exon1	c.A70G	p.R24G	ATGGCCTAATGCA	.	99.0	4.0	78.0	0.0	.	47	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34130221	34130221	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	RYR3	NM_001036	exon89	c.C12040T	p.L4014L	AAGTGTCTGTTGG	.	140.0	18.0	108.0	0.0	.	760	.	.	Atlas-SNP
PDCD7	10081	hgsc.bcm.edu	hg19	15	65421369	65421369	+	Splice_Site	SNP	C	C	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	PDCD7	NM_005707	exon3	c.1009+1G>T	.	CAGTTACCTTTCC	.	79.0	28.0	52.0	0.0	.	22	.	.	Atlas-SNP
DENND4A	10260	hgsc.bcm.edu	hg19	15	66021923	66021923	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	DENND4A	NM_001144823	exon10	c.C1260T	p.I420I	GGAATGGATAAGA	.	82.0	28.0	69.0	0.0	.	217	.	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88679766	88679766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	NTRK3	NM_001243101	exon8	c.G697A	p.G233S	CAGAGCCATTGCA	.	97.0	38.0	51.0	0.0	.	587	.	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2814152	2814152	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	SRRM2	NM_016333	exon11	c.C3623G	p.T1208S	TTAGAACCCCGCC	.	196.0	28.0	104.0	0.0	.	263	.	.	Atlas-SNP
DNAAF1	123872	hgsc.bcm.edu	hg19	16	84203706	84203706	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	DNAAF1,NS,carcinoma,0,3	DNAAF1	NM_178452	exon8	c.G1272A	p.S424S	ACTGTCGTCACCT	.	105.0	50.0	110.0	0.0	.	81	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578211	7578211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	TP53_ENST00000545858,NS,adenocarcinoma,-1,1	TP53	NM_000546	exon6	c.G638T	p.R213L	CTATGTCGAAAAG	.	97.0	46.0	149.0	0.0	.	33396	.	.	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	hg19	17	21319642	21319642	+	Missense_Mutation	SNP	G	G	A	rs368741477		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	KCNJ12,NS,carcinoma,0,1	.	NM_001194958	exon3	c.G988A	p.V330M	GAGCCCGTGCTCT	.	94.0	15.0	118.0	0.0	.	.	.	.	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27014460	27014460	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	SUPT6H	NM_003170	exon23	c.G2977T	p.G993X	GGCCTGGGACCTC	.	75.0	25.0	49.0	0.0	.	165	.	.	Atlas-SNP
NAGLU	4669	hgsc.bcm.edu	hg19	17	40689495	40689495	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	NAGLU	NM_000263	exon2	c.G463C	p.D155H	GAGATAGACTGGA	.	109.0	46.0	66.0	0.0	.	36	.	.	Atlas-SNP
HOXB5	3215	hgsc.bcm.edu	hg19	17	46670974	46670974	+	Missense_Mutation	SNP	T	T	G	rs199857901	by1000genomes;alternate_allele	TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	HOXB5	NM_002147	exon1	c.A71C	p.Y24S	CTGCCATAATTTA	.	212.0	27.0	151.0	0.0	.	20	.	T|0.999;C|0.001	Atlas-SNP
TOB1	10140	hgsc.bcm.edu	hg19	17	48941376	48941376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	TOB1	NM_005749	exon2	c.G3T	p.M1I	AAGCTGCATAGCT	.	68.0	41.0	40.0	0.0	.	40	.	.	Atlas-SNP
TEX14	56155	hgsc.bcm.edu	hg19	17	56665261	56665261	+	Missense_Mutation	SNP	T	T	C	rs369322235		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	TEX14	NM_001201457	exon16	c.A2716G	p.T906A	ACCTGGTAGAGTC	.	123.0	20.0	63.0	0.0	.	343	.	.	Atlas-SNP
GPRC5C	55890	hgsc.bcm.edu	hg19	17	72436225	72436225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	GPRC5C	NM_022036	exon2	c.G445A	p.V149M	TGCCTCGTGTTTG	.	67.0	36.0	35.0	0.0	.	92	.	.	Atlas-SNP
ME2	4200	hgsc.bcm.edu	hg19	18	48452204	48452204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	ME2	NM_001168335	exon12	c.T1250C	p.F417S	TAATATTTGCATT	.	282.0	115.0	192.0	0.0	.	49	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10610255	10610255	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	KEAP1	NM_012289	exon2	c.T455G	p.V152G	TGGAGGACACACT	.	67.0	27.0	107.0	0.0	.	182	.	.	Atlas-SNP
TMED1	11018	hgsc.bcm.edu	hg19	19	10943770	10943770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	TMED1	NM_006858	exon4	c.C585A	p.F195L	TGACCAGAAGTTG	.	68.0	33.0	102.0	0.0	.	22	.	.	Atlas-SNP
NXNL1	115861	hgsc.bcm.edu	hg19	19	17571528	17571528	+	Missense_Mutation	SNP	C	C	A	rs374915427	alternate_allele	TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	NXNL1	NM_138454	exon1	c.G151T	p.V51L	TGGGCACGAAGGC	.	49.0	26.0	57.0	0.0	.	13	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38377966	38377966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	WDR87	NM_031951	exon6	c.C6228G	p.I2076M	CTTTAAGATTTTG	.	237.0	38.0	165.0	0.0	.	191	.	.	Atlas-SNP
SHISA7	729956	hgsc.bcm.edu	hg19	19	55944926	55944926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	SHISA7	NM_001145176	exon4	c.C1214A	p.A405E	AGGCGCGCGCGCG	.	51.0	17.0	51.0	0.0	.	14	.	.	Atlas-SNP
R3HDML	140902	hgsc.bcm.edu	hg19	20	42979420	42979420	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	R3HDML	NM_178491	exon5	c.C750G	p.F250L	CAAGTTCACGTGG	.	183.0	45.0	121.0	0.0	.	33	.	.	Atlas-SNP
WDR4	10785	hgsc.bcm.edu	hg19	21	44272435	44272435	+	Splice_Site	SNP	C	C	A	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	WDR4	NM_033661	exon11	c.976-1G>T	.	AACAGACTGCAGG	.	89.0	14.0	76.0	0.0	.	35	.	.	Atlas-SNP
ANKRD54	129138	hgsc.bcm.edu	hg19	22	38228664	38228664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	ANKRD54	NM_138797	exon7	c.A808G	p.M270V	TGGTCATCTGCAG	.	55.0	21.0	37.0	0.0	.	7	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20211662	20211662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	RPS6KA3	NM_004586	exon7	c.T536G	p.L179R	AAAGCAAGTGCAA	.	82.0	22.0	58.0	0.0	.	110	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24382426	24382426	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	.	NM_001136234	exon1	c.G1549C	p.A517P	GCTGCTGCTCCTG	.	171.0	9.0	168.0	0.0	.	.	.	.	Atlas-SNP
ABCB7	22	hgsc.bcm.edu	hg19	X	74295382	74295382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	ABCB7	NM_004299	exon6	c.A673G	p.R225G	CTATTCTTCGGAT	.	257.0	57.0	186.0	0.0	.	69	.	.	Atlas-SNP
FAM199X	139231	hgsc.bcm.edu	hg19	X	103420443	103420443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	FAM199X	NM_207318	exon2	c.C337G	p.P113A	TTATTTCCTGAGG	.	84.0	15.0	65.0	0.0	.	38	.	.	Atlas-SNP
DCX	1641	hgsc.bcm.edu	hg19	X	110654106	110654106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	DCX	NM_000555	exon1	c.C97A	p.Q33K	CCCCTTGAAGAGA	.	484.0	186.0	349.0	0.0	.	158	.	.	Atlas-SNP
NADK	65220	hgsc.bcm.edu	hg19	1	1686824	1686825	+	Frame_Shift_Ins	INS	-	-	TTTC	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	NADK	NM_001198994	exon9	c.1112_1113insGAAA	p.Q371fs	.	.	100.0	36.0	48.0	0.0	.	79	.	.	Atlas-INDEL
TTC27	55622	hgsc.bcm.edu	hg19	2	33042572	33042572	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	TTC27	NM_017735	exon19	c.2356delC	p.Q786fs	.	.	128.0	33.0	101.0	0.0	.	71	.	.	Atlas-Indel,Pindel
SP140	11262	hgsc.bcm.edu	hg19	2	231115716	231115716	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	SP140	NM_007237	exon10	c.996delA	p.S332fs	.	.	123.0	18.0	76.0	0.0	.	121	.	.	Atlas-INDEL
SP140	11262	hgsc.bcm.edu	hg19	2	231115713	231115714	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	SP140	NM_007237	exon10	c.993_994del	p.331_332del	.	.	122.0	18.0	80.0	0.0	.	121	.	.	Atlas-INDEL
FAM83H	286077	hgsc.bcm.edu	hg19	8	144810307	144810307	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	FAM83H	NM_198488	exon5	c.1325delG	p.R442fs	.	.	1503.0	327.0	930.0	0.0	.	68	.	.	Atlas-Indel,Pindel
SP140	11262	hgsc.bcm.edu	hg19	2	231115713	231115716	+	Frame_Shift_Del	DEL	TCAG	TCAG	-	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	TCAG	TCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	SP140	NM_007237	exon10	c.993_996del	p.331_332del	.	.	122.0	16.0	79.0	0.0	.	121	.	.	Pindel
NADK	65220	hgsc.bcm.edu	hg19	1	1686825	1686825	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9GY-01A-11D-A382-10	TCGA-2Y-A9GY-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	75a72b01-26d1-410f-a2f3-fabe09059eed	e1cd43c8-e295-4191-8754-0520f03119e1	.	NADK	NM_001198994	exon9	c.1112delA	p.Q371fs	.	.	100.0	29.0	48.0	0.0	.	79	.	.	Pindel