Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ARHGEF16	27237	hgsc.bcm.edu	hg19	1	3390035	3390035	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ARHGEF16	NM_014448	exon8	c.C1254T	p.S418S	GCTCTCCTTCCTG	.	80.0	12.0	90.0	0.0	.	76	.	.	Atlas-SNP
SPOCD1	90853	hgsc.bcm.edu	hg19	1	32256885	32256885	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	SPOCD1	NM_144569	exon16	c.G2970C	p.W990C	AAGAGCCCAAAGG	.	62.0	14.0	85.0	0.0	.	109	.	.	Atlas-SNP
KIAA0907	22889	hgsc.bcm.edu	hg19	1	155896529	155896529	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	KIAA0907	NM_014949	exon6	c.C619G	p.Q207E	CTGGCTGGTGATA	.	262.0	67.0	258.0	0.0	.	58	.	.	Atlas-SNP
TEX35	84066	hgsc.bcm.edu	hg19	1	178491567	178491567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	TEX35	NM_032126	exon9	c.G694A	p.G232R	ACTGAGGGAAGGT	.	92.0	30.0	81.0	0.0	.	15	.	.	Atlas-SNP
OR2M2	391194	hgsc.bcm.edu	hg19	1	248343868	248343868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	OR2M2	NM_001004688	exon1	c.T581C	p.I194T	CATCAATATTTGA	.	159.0	10.0	159.0	0.0	.	149	.	.	Atlas-SNP
TMEM150A	129303	hgsc.bcm.edu	hg19	2	85827014	85827014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	TMEM150A	NM_001031738	exon6	c.G396T	p.Q132H	AAGCACCTGAAAG	.	121.0	37.0	136.0	0.0	.	15	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230723842	230723842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	TRIP12	NM_004238	exon3	c.G547A	p.A183T	AGGTGGCTGATTT	.	86.0	27.0	91.0	0.0	.	207	.	.	Atlas-SNP
SLC22A14	9389	hgsc.bcm.edu	hg19	3	38347652	38347652	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	SLC22A14	NM_004803	exon1	c.C135T	p.H45H	TGTCCACACCAAG	.	140.0	35.0	190.0	0.0	.	64	.	.	Atlas-SNP
DALRD3	55152	hgsc.bcm.edu	hg19	3	49055466	49055466	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	DALRD3	NM_001009996	exon2	c.C451G	p.R151G	GAGCGCGCAGGGC	.	42.0	16.0	57.0	0.0	.	57	.	.	Atlas-SNP
GPM6A	2823	hgsc.bcm.edu	hg19	4	176556177	176556177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	GPM6A	NM_201591	exon7	c.G716T	p.W239L	TAGGCCCAGTTGG	.	73.0	14.0	75.0	0.0	.	70	.	.	Atlas-SNP
IRX4	50805	hgsc.bcm.edu	hg19	5	1878600	1878600	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	IRX4	NM_016358	exon5	c.A1043T	p.E348V	TTGGCCTCGCAGA	.	33.0	9.0	47.0	0.0	.	45	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60839733	60839733	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ZSWIM6	NM_020928	exon14	c.C3237T	p.S1079S	GCTTAGCCACTCC	.	103.0	12.0	140.0	0.0	.	51	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90106847	90106847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	GPR98	NM_032119	exon74	c.T15770C	p.I5257T	TCAGCATAACAGT	.	221.0	52.0	264.0	0.0	.	605	.	.	Atlas-SNP
RFESD	317671	hgsc.bcm.edu	hg19	5	94988893	94988893	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	RFESD	NM_001131066	exon3	c.A133T	p.I45F	GCTGTCATCTCAG	.	73.0	17.0	95.0	0.0	.	22	.	.	Atlas-SNP
CAMLG	819	hgsc.bcm.edu	hg19	5	134076873	134076873	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	CAMLG	NM_001745	exon2	c.A293T	p.Q98L	CTGACCAGCAGGG	.	245.0	68.0	248.0	0.0	.	27	.	.	Atlas-SNP
PCDHGB1	56104	hgsc.bcm.edu	hg19	5	140731303	140731303	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	PCDHGB1	NM_018922	exon1	c.G1476A	p.L492L	TGACCTGGAGCCG	.	107.0	31.0	139.0	0.0	.	198	.	.	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	hg19	5	168135071	168135071	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	SLIT3	NM_001271946	exon26	c.T2775C	p.N925N	GCAGGCATTGCAT	.	230.0	67.0	275.0	0.0	.	224	.	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178634533	178634533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ADAMTS2	NM_021599	exon4	c.T872C	p.L291P	GTCAGCAGGTACT	.	72.0	30.0	77.0	0.0	.	190	.	.	Atlas-SNP
PHIP	55023	hgsc.bcm.edu	hg19	6	79727292	79727292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	PHIP	NM_017934	exon11	c.T1003C	p.F335L	CCAGAAACATTCC	.	374.0	105.0	369.0	0.0	.	177	.	.	Atlas-SNP
TSPYL1	7259	hgsc.bcm.edu	hg19	6	116600549	116600549	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	TSPYL1	NM_003309	exon1	c.G445C	p.E149Q	CAGCCTCCGCCCC	.	26.0	8.0	37.0	0.0	.	28	.	.	Atlas-SNP
CCR6	1235	hgsc.bcm.edu	hg19	6	167549735	167549735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	CCR6	NM_004367	exon3	c.T17C	p.M6T	AATCAATGAATTT	.	91.0	34.0	78.0	0.0	.	36	.	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	66.0	7.0	81.0	0.0	.	58	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149494390	149494390	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	.	NM_198455	exon46	c.C6861A	p.L2287L	GGCCCTCTCCTCT	.	99.0	19.0	83.0	0.0	.	.	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113812406	113812406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	CSMD3	NM_198123	exon13	c.A1957G	p.K653E	TAACCTTGAAACC	.	118.0	31.0	118.0	0.0	.	2325	.	.	Atlas-SNP
NRARP	441478	hgsc.bcm.edu	hg19	9	140196211	140196211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	NRARP	NM_001004354	exon1	c.A170G	p.Q57R	ACCGACTGGTGCA	.	87.0	26.0	117.0	0.0	.	7	.	.	Atlas-SNP
PPRC1	23082	hgsc.bcm.edu	hg19	10	103906507	103906507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	PPRC1	NM_015062	exon9	c.C3758G	p.S1253C	CCAAATCTCCTAA	.	92.0	27.0	118.0	0.0	.	151	.	.	Atlas-SNP
TDRD1	56165	hgsc.bcm.edu	hg19	10	115981225	115981225	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	TDRD1	NM_198795	exon20	c.A2880G	p.K960K	ACCAAAAGGGATG	.	112.0	5.0	189.0	0.0	.	126	.	.	Atlas-SNP
ZNF143	7702	hgsc.bcm.edu	hg19	11	9494252	9494252	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ZNF143	NM_003442	exon3	c.C141T	p.G47G	GGAAGGCGTAAGC	.	101.0	23.0	135.0	0.0	.	38	.	.	Atlas-SNP
P4HA3	283208	hgsc.bcm.edu	hg19	11	74013578	74013578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	P4HA3	NM_182904	exon3	c.G403C	p.G135R	CTGCTCCCTCAAG	.	113.0	37.0	129.0	0.0	.	43	.	.	Atlas-SNP
GRIK4	2900	hgsc.bcm.edu	hg19	11	120690494	120690494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	GRIK4,NS,carcinoma,-2,1	GRIK4	NM_014619	exon4	c.T376C	p.F126L	GAGGAGTTCGTCA	.	95.0	24.0	131.0	1.0	.	149	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	hg19	12	53069229	53069229	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	KRT1	NM_006121	exon9	c.C1683T	p.S561S	ACCTCCGGAGCCG	.	42.0	8.0	51.0	0.0	.	110	.	.	Atlas-SNP
KRT79	338785	hgsc.bcm.edu	hg19	12	53225368	53225368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	KRT79	NM_175834	exon2	c.T520C	p.W174R	GTGCCCACTTGGT	.	66.0	25.0	58.0	0.0	.	78	.	.	Atlas-SNP
GNPTAB	79158	hgsc.bcm.edu	hg19	12	102190473	102190473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	GNPTAB	NM_024312	exon2	c.G185T	p.G62V	GACTTTCCAGCAA	.	127.0	40.0	134.0	0.0	.	120	.	.	Atlas-SNP
CARKD	55739	hgsc.bcm.edu	hg19	13	111287890	111287890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	CARKD	NM_018210	exon8	c.G727T	p.V243L	GTGACGGTGGTCC	.	98.0	27.0	107.0	0.0	.	36	.	.	Atlas-SNP
JPH4	84502	hgsc.bcm.edu	hg19	14	24044991	24044991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	JPH4	NM_001146028	exon3	c.C1054T	p.R352W	CCCGCCGAAGGGC	.	139.0	39.0	156.0	0.0	.	64	.	.	Atlas-SNP
RGS6	9628	hgsc.bcm.edu	hg19	14	72976961	72976961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	RGS6	NM_001204424	exon14	c.G1065T	p.E355D	CCTGGAGTCCGAA	.	89.0	27.0	110.0	0.0	.	92	.	.	Atlas-SNP
TTBK2	146057	hgsc.bcm.edu	hg19	15	43045067	43045067	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	TTBK2	NM_173500	exon14	c.T2377G	p.L793V	TACTTAACTTCTC	.	113.0	41.0	110.0	0.0	.	82	.	.	Atlas-SNP
C16orf45	89927	hgsc.bcm.edu	hg19	16	15609232	15609232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	C16orf45	NM_033201	exon2	c.A177C	p.K59N	GGCAAAAATTCAG	.	74.0	5.0	99.0	0.0	.	24	.	.	Atlas-SNP
CES2	8824	hgsc.bcm.edu	hg19	16	66971949	66971949	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	CES2	NM_003869	exon2	c.C278G	p.S93X	AGGACTCAGCCAG	.	98.0	34.0	92.0	0.0	.	43	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88503444	88503444	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ZNF469	NM_001127464	exon2	c.T9482A	p.M3161K	TCTGGATGTACAA	.	62.0	16.0	87.0	0.0	.	121	.	.	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	hg19	17	29203505	29203505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ATAD5	NM_024857	exon15	c.T3721A	p.F1241I	AATTATTTTAAAG	.	386.0	121.0	444.0	1.0	.	150	.	.	Atlas-SNP
GGNBP2	79893	hgsc.bcm.edu	hg19	17	34945743	34945743	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	GGNBP2	NM_024835	exon14	c.C1996T	p.R666X	CAATACCGACAGC	.	162.0	17.0	179.0	0.0	.	72	.	.	Atlas-SNP
PTRF	284119	hgsc.bcm.edu	hg19	17	40574761	40574761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	PTRF	NM_012232	exon1	c.G355A	p.V119I	CGTTGACGCTGAC	.	120.0	34.0	138.0	0.0	.	48	.	.	Atlas-SNP
ITGB3	3690	hgsc.bcm.edu	hg19	17	45369918	45369918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ITGB3	NM_000212	exon10	c.G1674T	p.K558N	CTACAAGGGGGAG	.	1317.0	420.0	1609.0	1.0	.	157	.	.	Atlas-SNP
MARCH10	162333	hgsc.bcm.edu	hg19	17	60814029	60814029	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	MARCH10	NM_001100875	exon6	c.T1200A	p.P400P	CGAAAGAGGGCTC	.	117.0	42.0	98.0	0.0	.	102	.	.	Atlas-SNP
DYM	54808	hgsc.bcm.edu	hg19	18	46798586	46798586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	DYM	NM_017653	exon11	c.A1213G	p.T405A	CTTCCGTAAGGAT	.	274.0	67.0	297.0	0.0	.	52	.	.	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	hg19	19	4511406	4511406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	PLIN4	NM_001080400	exon3	c.A2524G	p.N842D	CGATATTTTGGGT	.	125.0	12.0	167.0	0.0	.	191	.	.	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	hg19	19	4511426	4511426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	PLIN4	NM_001080400	exon3	c.C2504T	p.T835I	AGCCCAGTTTGCA	.	114.0	9.0	157.0	0.0	.	191	.	.	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	hg19	19	6937618	6937618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	EMR1	NM_001974	exon20	c.T2614A	p.S872T	CAGACCTCAAGGA	.	93.0	30.0	113.0	0.0	.	153	.	.	Atlas-SNP
APLP1	333	hgsc.bcm.edu	hg19	19	36363437	36363437	+	Silent	SNP	T	T	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	APLP1	NM_005166	exon7	c.T903A	p.P301P	CATGCCTGGGGAA	.	120.0	35.0	178.0	0.0	.	77	.	.	Atlas-SNP
ZNF780A	284323	hgsc.bcm.edu	hg19	19	40581433	40581433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ZNF780A	NM_001142577	exon6	c.G919A	p.V307I	TACATACAAAGGG	.	186.0	69.0	216.0	0.0	.	156	.	.	Atlas-SNP
ZNF225	7768	hgsc.bcm.edu	hg19	19	44635631	44635631	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ZNF225	NM_013362	exon5	c.C864T	p.F288F	GCCATTCAAATGT	.	133.0	38.0	160.0	0.0	.	41	.	.	Atlas-SNP
SLC23A2	9962	hgsc.bcm.edu	hg19	20	4854660	4854660	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	SLC23A2	NM_203327	exon11	c.A1024T	p.K342X	CATACTTTGTGCT	.	114.0	35.0	127.0	0.0	.	62	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47317318	47317318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	PREX1	NM_020820	exon7	c.T890G	p.L297R	ACGAGAAGGTTGT	.	128.0	38.0	165.0	0.0	.	441	.	.	Atlas-SNP
KRTAP27-1	643812	hgsc.bcm.edu	hg19	21	31709506	31709506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	KRTAP27-1	NM_001077711	exon1	c.T481C	p.C161R	ACTGACATTGGCT	.	133.0	53.0	167.0	0.0	.	53	.	.	Atlas-SNP
HLCS	3141	hgsc.bcm.edu	hg19	21	38126652	38126652	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	HLCS	NM_000411	exon12	c.T2076C	p.S692S	GAAGCCAGAATCG	.	1851.0	154.0	2054.0	1.0	.	64	.	.	Atlas-SNP
FBLN1	2192	hgsc.bcm.edu	hg19	22	45931160	45931160	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	FBLN1	NM_006487	exon8	c.C865G	p.R289G	CGCTGCCGACCCA	.	119.0	7.0	133.0	0.0	.	143	.	.	Atlas-SNP
CXorf30	645090	hgsc.bcm.edu	hg19	X	36317241	36317241	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	CXorf30	NM_001098843	exon7	c.A174T	p.P58P	TTCTCCAGCAACT	.	612.0	182.0	733.0	0.0	.	76	.	.	Atlas-SNP
IRS4	8471	hgsc.bcm.edu	hg19	X	107977611	107977611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	IRS4	NM_003604	exon1	c.T1964A	p.L655H	AAATAAAGTCTGA	.	197.0	9.0	246.0	0.0	.	253	.	.	Atlas-SNP
FMR1	2332	hgsc.bcm.edu	hg19	X	147014109	147014109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	FMR1	NM_002024	exon8	c.G796A	p.G266R	ATTTATGGAGAGG	.	666.0	200.0	689.0	1.0	.	93	.	.	Atlas-SNP
ABCC12	94160	hgsc.bcm.edu	hg19	16	48139142	48139159	+	In_Frame_Del	DEL	ACACCATGCTTGCAGTGT	ACACCATGCTTGCAGTGT	-	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	ACACCATGCTTGCAGTGT	ACACCATGCTTGCAGTGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ABCC12	NM_033226	exon19	c.2565_2582del	p.855_861del	.	.	94.0	18.0	119.0	0.0	.	190	.	.	Atlas-Indel,Pindel
MSH3	4437	hgsc.bcm.edu	hg19	5	79950707	79950733	+	In_Frame_Del	DEL	CTGCAGCGGCCGCAGCGGCCGCAGCGC	CTGCAGCGGCCGCAGCGGCCGCAGCGC	-	rs72486518	alternate_allele	TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	CTGCAGCGGCCGCAGCGGCCGCAGCGC	CTGCAGCGGCCGCAGCGGCCGCAGCGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	MSH3	NM_002439	exon1	c.160_186del	p.54_62del	.	.	111.0	49.0	119.0	0.0	.	129	.	.	Atlas-INDEL
ATP1A1	476	hgsc.bcm.edu	hg19	1	116935513	116935514	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	ATP1A1	NM_000701	exon11	c.1370_1371insA	p.L457fs	.	.	88.0	25.0	141.0	0.0	.	87	.	.	Atlas-Indel,Pindel
NRBP2	340371	hgsc.bcm.edu	hg19	8	144917875	144917876	+	Frame_Shift_Ins	INS	-	-	AGGCGGCCAGCTTCAT	novel		TCGA-2Y-A9GV-01A-11D-A382-10	TCGA-2Y-A9GV-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbb0ee98-a0a5-4308-96f6-1ba7f5b71fef	c00cd9c3-fd3e-497f-94dd-30cfb18e4aa2	.	NRBP2	NM_178564	exon18	c.1463_1464insATGAAGCTGGCCGCCT	p.F488fs	.	.	126.0	10.0	181.0	0.0	.	20	.	.	Atlas-Indel,Pindel