Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CCDC27	148870	hgsc.bcm.edu	hg19	1	3669193	3669193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	CCDC27	NM_152492	exon1	c.G148A	p.A50T	AAGGAGGCCAGCC	.	111.0	19.0	182.0	0.0	.	79	.	.	Atlas-SNP
AJAP1	55966	hgsc.bcm.edu	hg19	1	4772364	4772364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	AJAP1	NM_018836	exon2	c.C434A	p.A145D	GTGGGGCCCCGGA	.	64.0	29.0	134.0	0.0	.	68	.	.	Atlas-SNP
KAZN	23254	hgsc.bcm.edu	hg19	1	15441094	15441094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	KAZN	NM_201628	exon15	c.T2291A	p.L764Q	GCCGTCTGGAAGG	.	168.0	41.0	252.0	0.0	.	57	.	.	Atlas-SNP
PDIK1L	149420	hgsc.bcm.edu	hg19	1	26448455	26448455	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	PDIK1L	NM_001243532	exon3	c.G413C	p.R138P	CCAATCGTAAAAC	.	95.0	4.0	114.0	0.0	.	19	.	.	Atlas-SNP
CCDC23	374969	hgsc.bcm.edu	hg19	1	43273173	43273173	+	Splice_Site	SNP	T	T	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	CCDC23	NM_199342	exon4	c.115-2A>C	.	TAGATCTGAATGA	.	26.0	7.0	58.0	0.0	.	3	.	.	Atlas-SNP
SLC1A7	6512	hgsc.bcm.edu	hg19	1	53571448	53571448	+	Splice_Site	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	SLC1A7	NM_006671	exon5	c.432-2A>G	.	TGTTCCTAGGAAG	.	85.0	17.0	149.0	0.0	.	65	.	.	Atlas-SNP
SGIP1	84251	hgsc.bcm.edu	hg19	1	67148034	67148034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	SGIP1	NM_032291	exon15	c.G1297A	p.G433S	GGCCCTGGTCCGG	.	192.0	40.0	189.0	0.0	.	272	.	.	Atlas-SNP
COL24A1	255631	hgsc.bcm.edu	hg19	1	86591328	86591328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	COL24A1	NM_152890	exon3	c.T691C	p.S231P	CTGCAGATGCTTC	.	52.0	15.0	58.0	0.0	.	202	.	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152324873	152324873	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	FLG2	NM_001014342	exon3	c.G5389T	p.G1797X	TTCTTCCAGTGGT	.	145.0	13.0	86.0	0.0	.	431	.	.	Atlas-SNP
KIAA0907	22889	hgsc.bcm.edu	hg19	1	155887335	155887335	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	KIAA0907	NM_014949	exon11	c.A1395G	p.T465T	CTCCTCTGTGAAT	.	142.0	15.0	125.0	0.0	.	58	.	.	Atlas-SNP
C1orf111	284680	hgsc.bcm.edu	hg19	1	162344031	162344031	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	C1orf111	NM_182581	exon3	c.T593A	p.L198H	CTCTTGAGGAAGT	.	162.0	13.0	104.0	0.0	.	26	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167096100	167096100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DUSP27	NM_001080426	exon5	c.G1732A	p.E578K	GTAGGGGAGAAGA	.	213.0	30.0	209.0	0.0	.	235	.	.	Atlas-SNP
DCAF6	55827	hgsc.bcm.edu	hg19	1	168032858	168032858	+	Splice_Site	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DCAF6	NM_018442	exon16	c.2088-1G>C	.	CATATAGACGCTC	.	285.0	34.0	220.0	0.0	.	99	.	.	Atlas-SNP
RABGAP1L	9910	hgsc.bcm.edu	hg19	1	174957817	174957817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	RABGAP1L	NM_001243765	exon8	c.A802G	p.S268G	ATTTTCAGCAAGG	.	122.0	18.0	115.0	0.0	.	103	.	.	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175067608	175067608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TNN	NM_022093	exon9	c.G1996T	p.V666L	GTTCCGGTGGGGA	.	454.0	108.0	356.0	0.0	.	297	.	.	Atlas-SNP
RASAL2	9462	hgsc.bcm.edu	hg19	1	178408576	178408576	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	RASAL2	NM_170692	exon6	c.C694G	p.L232V	CCTAAACTAAAAG	.	105.0	23.0	50.0	0.0	.	334	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179561920	179561920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TDRD5	NM_173533	exon2	c.T170C	p.V57A	AGCTGGTATTGGA	.	156.0	19.0	119.0	0.0	.	149	.	.	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182850422	182850422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DHX9	NM_001357	exon23	c.T2648C	p.I883T	GTACCATTGCTGC	.	96.0	9.0	75.0	0.0	.	114	.	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208272269	208272269	+	Silent	SNP	T	T	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	PLXNA2	NM_025179	exon6	c.A1653C	p.R551R	AGCAAATCGATTA	.	116.0	12.0	66.0	0.0	.	178	.	.	Atlas-SNP
RCOR3	55758	hgsc.bcm.edu	hg19	1	211462588	211462588	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	RCOR3	NM_001136223	exon8	c.A789G	p.Q263Q	TTTACAACATCGC	.	391.0	79.0	278.0	0.0	.	51	.	.	Atlas-SNP
RD3	343035	hgsc.bcm.edu	hg19	1	211652629	211652629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	RD3	NM_183059	exon3	c.G337A	p.E113K	ACACCTCCTGCAC	.	145.0	30.0	159.0	0.0	.	26	.	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225190629	225190629	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DNAH14	NM_001373	exon9	c.G975A	p.K325K	TGTAAAGGTGAGT	.	156.0	20.0	55.0	0.0	.	300	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237919659	237919659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	RYR2	NM_001035	exon81	c.G11217T	p.M3739I	TGAGATGGTGCTA	.	72.0	6.0	43.0	0.0	.	1273	.	.	Atlas-SNP
WDR64	128025	hgsc.bcm.edu	hg19	1	241958512	241958512	+	Nonsense_Mutation	SNP	C	C	T	rs201917329	bycluster	TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	WDR64_ENST00000366552,colon,carcinoma,0,4	WDR64	NM_144625	exon25	c.C2971T	p.R991X	CAGATTCGAAGAT	.	152.0	22.0	127.0	0.0	.	234	.	.	Atlas-SNP
OR2W3	343171	hgsc.bcm.edu	hg19	1	248059059	248059059	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	OR2W3	NM_001001957	exon1	c.C171A	p.T57T	CCACACCCCCATG	.	164.0	46.0	134.0	0.0	.	113	.	.	Atlas-SNP
ALK	238	hgsc.bcm.edu	hg19	2	29551301	29551301	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ALK	NM_004304	exon6	c.T1329C	p.C443C	ATTCCAACAAGTG	.	222.0	21.0	182.0	0.0	.	533	.	.	Atlas-SNP
PLEKHH2	130271	hgsc.bcm.edu	hg19	2	43953414	43953414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	PLEKHH2	NM_172069	exon17	c.C2545T	p.P849S	TAGTTTCCTTTAG	.	187.0	38.0	168.0	0.0	.	156	.	.	Atlas-SNP
DQX1	165545	hgsc.bcm.edu	hg19	2	74752293	74752293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DQX1	NM_133637	exon3	c.G274A	p.G92R	GGAACCCTCTGGC	.	138.0	6.0	150.0	0.0	.	95	.	.	Atlas-SNP
TMEM177	80775	hgsc.bcm.edu	hg19	2	120438742	120438742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TMEM177	NM_030577	exon2	c.G313A	p.G105S	GTGGTGGGCATCC	.	72.0	27.0	161.0	0.0	.	26	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179615916	179615916	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TTN	NM_133379	exon46	c.T11211G	p.S3737R	TTTATCACTAGCT	.	102.0	21.0	75.0	0.0	.	18412	.	.	Atlas-SNP
BOLL	66037	hgsc.bcm.edu	hg19	2	198641827	198641827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	BOLL_ENST00000321801,colon,carcinoma,0,6	BOLL	NM_197970	exon4	c.G268A	p.V90I	AAGTGACGAAACC	.	389.0	90.0	507.0	0.0	.	67	.	.	Atlas-SNP
SGPP2	130367	hgsc.bcm.edu	hg19	2	223339386	223339386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	SGPP2	NM_152386	exon2	c.C319T	p.P107S	TTTCTTCCATTCA	.	77.0	21.0	122.0	0.0	.	39	.	.	Atlas-SNP
ARPP21	10777	hgsc.bcm.edu	hg19	3	35778748	35778748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ARPP21	NM_016300	exon16	c.T1538C	p.M513T	GCGCCATGGTGGG	.	126.0	8.0	179.0	0.0	.	153	.	.	Atlas-SNP
ACAA1	30	hgsc.bcm.edu	hg19	3	38178099	38178099	+	Silent	SNP	C	C	T	rs11552535		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ACAA1	NM_001130410	exon2	c.G249A	p.L83L	GTCCCCCAGCTGT	.	130.0	31.0	247.0	0.0	.	32	.	.	Atlas-SNP
KIF15	56992	hgsc.bcm.edu	hg19	3	44893334	44893334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	KIF15	NM_020242	exon33	c.A3862T	p.T1288S	AGAATGACTGATG	.	186.0	8.0	183.0	0.0	.	103	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52440899	52440899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	BAP1	NM_004656	exon8	c.G605T	p.W202L	TCTGTCCACTCCT	.	46.0	29.0	134.0	0.0	.	371	.	.	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	hg19	3	57994371	57994371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	FLNB	NM_001457	exon1	c.A80G	p.N27S	GGTGCAACGAGCA	.	70.0	16.0	242.0	0.0	.	430	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77623726	77623726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	ROBO2_ENST00000487694,rectum,carcinoma,0,2	ROBO2	NM_002942	exon14	c.C2048T	p.S683L	CATCTTCGTGGCA	.	159.0	36.0	109.0	1.0	.	527	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77629133	77629133	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ROBO2	NM_002942	exon16	c.C2364G	p.I788M	CCATATCAACAAA	.	84.0	19.0	63.0	0.0	.	527	.	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78763622	78763622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ROBO1	NM_002941	exon8	c.G970T	p.D324Y	CCATGTCACCAGC	.	99.0	44.0	124.0	0.0	.	833	.	.	Atlas-SNP
ABCC5	10057	hgsc.bcm.edu	hg19	3	183643410	183643410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ABCC5	NM_005688	exon29	c.T4145C	p.L1382P	ATGGTCAGCATGG	.	64.0	13.0	100.0	0.0	.	142	.	.	Atlas-SNP
ACAP2	23527	hgsc.bcm.edu	hg19	3	195063318	195063318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ACAP2	NM_012287	exon6	c.C410T	p.A137V	ACTAACGCATTTT	.	102.0	39.0	139.0	0.0	.	72	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195501076	195501076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	MUC4	NM_018406	exon4	c.C13044G	p.F4348L	AAGGGGGAAGCCA	.	210.0	12.0	337.0	0.0	.	1505	.	.	Atlas-SNP
C4orf22	255119	hgsc.bcm.edu	hg19	4	81256985	81256985	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	C4orf22	NM_152770	exon1	c.A63C	p.E21D	CTATGAAGATTTC	.	39.0	10.0	80.0	0.0	.	35	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114276315	114276315	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ANK2	NM_001148	exon38	c.G6541C	p.D2181H	CCACTCGACTACA	.	132.0	15.0	79.0	0.0	.	576	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123122219	123122219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	KIAA1109	NM_015312	exon13	c.G1436T	p.C479F	GGCAGTGTGAATT	.	71.0	16.0	97.0	0.0	.	424	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123165177	123165177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	KIAA1109	NM_015312	exon29	c.A4911T	p.L1637F	AGCTTTAGACAGG	.	163.0	63.0	133.0	0.0	.	424	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155219388	155219388	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DCHS2	NM_017639	exon18	c.A4713G	p.V1571V	GACATATACTTTT	.	168.0	65.0	185.0	0.0	.	594	.	.	Atlas-SNP
CARD6	84674	hgsc.bcm.edu	hg19	5	40853355	40853355	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	CARD6	NM_032587	exon3	c.G1921C	p.V641L	AGATGTGTGTCTG	.	74.0	12.0	100.0	0.0	.	141	.	.	Atlas-SNP
IL31RA	133396	hgsc.bcm.edu	hg19	5	55147432	55147432	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	IL31RA	NM_001242637	exon1	c.G34C	p.A12P	ACCACGGCATGTG	.	69.0	30.0	70.0	0.0	.	84	.	.	Atlas-SNP
ERCC8	1161	hgsc.bcm.edu	hg19	5	60200668	60200668	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ERCC8	NM_000082	exon5	c.T432G	p.V144V	ACTATAAACTGTT	.	223.0	10.0	293.0	0.0	.	31	.	.	Atlas-SNP
ANKRA2	57763	hgsc.bcm.edu	hg19	5	72857113	72857113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ANKRA2	NM_023039	exon3	c.C290G	p.A97G	CATTCAGCTAAGT	.	105.0	42.0	98.0	0.0	.	23	.	.	Atlas-SNP
PHF15	23338	hgsc.bcm.edu	hg19	5	133873703	133873703	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	PHF15	NM_015288	exon3	c.C83A	p.S28X	CCGCATCAAGATG	.	117.0	10.0	151.0	0.0	.	60	.	.	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	hg19	5	135651385	135651385	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TRPC7	NM_020389	exon3	c.A863G	p.E288G	ATTGCTTCCACCT	.	102.0	31.0	87.0	0.0	.	126	.	.	Atlas-SNP
PCDHGB6	56100	hgsc.bcm.edu	hg19	5	140787868	140787868	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	PCDHGB6	NM_032100	exon1	c.C99A	p.I33I	GCCGATCCGCTAC	.	86.0	7.0	199.0	0.0	.	120	.	.	Atlas-SNP
EBF1	1879	hgsc.bcm.edu	hg19	5	158140067	158140067	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	EBF1	NM_024007	exon13	c.C1280G	p.T427S	ACCGAGGTGTTAG	.	130.0	31.0	116.0	0.0	.	110	.	.	Atlas-SNP
TTC1	7265	hgsc.bcm.edu	hg19	5	159437674	159437674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TTC1	NM_003314	exon2	c.A139T	p.R47W	CTGCTCAGGGATG	.	109.0	19.0	153.0	0.0	.	26	.	.	Atlas-SNP
HLA-B	3106	hgsc.bcm.edu	hg19	6	31324656	31324656	+	Missense_Mutation	SNP	T	T	C	rs281864590	alternate_allele	TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	HLA-B	NM_005514	exon2	c.A152G	p.Y51C	TCCACGTAGCCCA	.	113.0	28.0	190.0	0.0	.	54	.	.	Atlas-SNP
IBTK	25998	hgsc.bcm.edu	hg19	6	82906144	82906144	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	IBTK	NM_015525	exon22	c.G3045C	p.K1015N	ATTGGTCTTACCA	.	56.0	9.0	61.0	0.0	.	128	.	.	Atlas-SNP
QRSL1	55278	hgsc.bcm.edu	hg19	6	107111016	107111016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	QRSL1	NM_018292	exon10	c.G1322A	p.R441Q	GAACCCGAAGTGC	.	76.0	12.0	103.0	0.0	.	30	.	.	Atlas-SNP
WISP3	8838	hgsc.bcm.edu	hg19	6	112382473	112382473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	WISP3	NM_198239	exon2	c.G382A	p.E128K	AGGTACGAGACTG	.	115.0	20.0	107.0	0.0	.	33	.	.	Atlas-SNP
SGK1	6446	hgsc.bcm.edu	hg19	6	134498800	134498800	+	Splice_Site	SNP	C	C	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	SGK1	NM_001143677	exon2	c.160+1G>C	.	TACGAACCTTTCA	.	76.0	27.0	123.0	0.0	.	387	.	.	Atlas-SNP
IPCEF1	26034	hgsc.bcm.edu	hg19	6	154481159	154481159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	IPCEF1	NM_001130699	exon13	c.T1121C	p.L374P	ATGGCCAGATCAT	.	54.0	12.0	39.0	0.0	.	45	.	.	Atlas-SNP
TULP4	56995	hgsc.bcm.edu	hg19	6	158923744	158923744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TULP4	NM_020245	exon13	c.G3049A	p.G1017S	TCCAAGGGCGGGC	.	34.0	9.0	59.0	0.0	.	137	.	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	hg19	6	159653615	159653615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	FNDC1	NM_032532	exon11	c.G2071A	p.A691T	CCCGGCGCAAAGC	.	82.0	17.0	173.0	0.0	.	250	.	.	Atlas-SNP
LPA	4018	hgsc.bcm.edu	hg19	6	161016462	161016462	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	LPA	NM_005577	exon22	c.C3393T	p.C1131C	CACCAGGCATTGT	.	61.0	25.0	40.0	0.0	.	237	.	.	Atlas-SNP
MALSU1	115416	hgsc.bcm.edu	hg19	7	23347541	23347541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	.	NM_138446	exon3	c.A490G	p.T164A	AAGGACACTGATG	.	130.0	19.0	139.0	0.0	.	.	.	.	Atlas-SNP
DPY19L1	23333	hgsc.bcm.edu	hg19	7	34979865	34979865	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DPY19L1	NM_015283	exon19	c.A1545C	p.Q515H	TGAACCTTGTATT	.	72.0	14.0	54.0	0.0	.	56	.	.	Atlas-SNP
MLXIPL	51085	hgsc.bcm.edu	hg19	7	73038554	73038554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	MLXIPL	NM_032954	exon1	c.T269C	p.F90S	CACTCGAAGAGGC	.	205.0	122.0	229.0	0.0	.	54	.	.	Atlas-SNP
LIMK1	3984	hgsc.bcm.edu	hg19	7	73525982	73525982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	LIMK1	NM_002314	exon11	c.G1289C	p.S430T	AGGACAGCCAGTA	.	96.0	9.0	117.0	0.0	.	55	.	.	Atlas-SNP
SRPK2	6733	hgsc.bcm.edu	hg19	7	104844117	104844117	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	SRPK2	NM_182692	exon3	c.T187A	p.S63T	CATCTGATCCCAG	.	67.0	21.0	48.0	0.0	.	76	.	.	Atlas-SNP
TAS2R38	5726	hgsc.bcm.edu	hg19	7	141673139	141673139	+	Nonsense_Mutation	SNP	G	G	C	rs373253461	alternate_allele	TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TAS2R38	NM_176817	exon1	c.C351G	p.Y117X	GGAGCAGTAAAGC	.	99.0	22.0	78.0	0.0	.	51	.	.	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	hg19	8	17611234	17611234	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	MTUS1	NM_001001924	exon2	c.C2083T	p.L695L	AAAACAGAGAACC	.	44.0	10.0	57.0	0.0	.	144	.	.	Atlas-SNP
PCM1	5108	hgsc.bcm.edu	hg19	8	17796420	17796420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	PCM1	NM_006197	exon5	c.A514G	p.K172E	CAGTGTAAAGAGT	.	137.0	66.0	134.0	0.0	.	120	.	.	Atlas-SNP
TAF2	6873	hgsc.bcm.edu	hg19	8	120744294	120744294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TAF2	NM_003184	exon26	c.A3470G	p.K1157R	TTCTTCTTTTTCT	.	77.0	6.0	75.0	0.0	.	204	.	.	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	hg19	8	145740426	145740426	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	RECQL4	NM_004260	exon9	c.G1514C	p.G505A	CCGGCACCTGTAG	.	88.0	6.0	192.0	0.0	.	75	.	.	Atlas-SNP
RORB	6096	hgsc.bcm.edu	hg19	9	77249681	77249681	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	RORB	NM_006914	exon3	c.A228T	p.S76S	AATGTCAAGAGAT	.	56.0	6.0	61.0	0.0	.	89	.	.	Atlas-SNP
MURC	347273	hgsc.bcm.edu	hg19	9	103340609	103340609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	MURC	NM_001018116	exon1	c.G184A	p.E62K	GAAATGGAAAATG	.	99.0	33.0	147.0	0.0	.	43	.	.	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	hg19	10	7749193	7749193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ITIH2	NM_002216	exon3	c.G189T	p.M63I	AGAAATGATGGTA	.	61.0	19.0	85.0	0.0	.	144	.	.	Atlas-SNP
ARHGAP21	57584	hgsc.bcm.edu	hg19	10	24889744	24889744	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ARHGAP21	NM_020824	exon14	c.C2963G	p.P988R	CTGATGGGCTGCT	.	143.0	58.0	200.0	0.0	.	185	.	.	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	hg19	10	108339221	108339221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	SORCS1_ENST00000344440,NS,carcinoma,0,2	SORCS1	NM_001206572	exon25	c.G3277A	p.D1093N	TGAGGTCCACCAG	.	62.0	17.0	82.0	0.0	.	534	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123844285	123844285	+	Missense_Mutation	SNP	C	C	T	rs201466757		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TACC2	NM_206862	exon4	c.C2270T	p.T757M	TGCTGACGTCCCC	.	90.0	5.0	223.0	0.0	.	271	.	C|0.999;T|0.001	Atlas-SNP
TUBGCP2	10844	hgsc.bcm.edu	hg19	10	135094884	135094884	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TUBGCP2	NM_001256617	exon18	c.C2550T	p.I850I	CTTGTTGATGGTG	.	41.0	7.0	91.0	0.0	.	79	.	.	Atlas-SNP
OR51L1	119682	hgsc.bcm.edu	hg19	11	5020444	5020444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	OR51L1	NM_001004755	exon1	c.T232C	p.S78P	TCCCTGTCTACAC	.	94.0	43.0	74.0	0.0	.	60	.	.	Atlas-SNP
ZDHHC13	54503	hgsc.bcm.edu	hg19	11	19170829	19170829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ZDHHC13	NM_019028	exon5	c.T470C	p.V157A	TGGCAGTATTGTT	.	61.0	19.0	67.0	0.0	.	40	.	.	Atlas-SNP
SLC22A8	9376	hgsc.bcm.edu	hg19	11	62760762	62760762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	SLC22A8	NM_001184732	exon11	c.G1576A	p.A526T	GGGAGGCCTTTTC	.	76.0	18.0	73.0	0.0	.	60	.	.	Atlas-SNP
PPFIA1	8500	hgsc.bcm.edu	hg19	11	70201848	70201848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	PPFIA1	NM_177423	exon18	c.A2419T	p.I807F	TCCTCCATTGGCC	.	125.0	17.0	201.0	0.0	.	114	.	.	Atlas-SNP
TMEM135	65084	hgsc.bcm.edu	hg19	11	87032351	87032351	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TMEM135	NM_022918	exon15	c.A1353T	p.P451P	AACACCAGAGTTG	.	84.0	15.0	63.0	0.0	.	40	.	.	Atlas-SNP
MMP3	4314	hgsc.bcm.edu	hg19	11	102713311	102713311	+	Splice_Site	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	MMP3,NS,carcinoma,0,1	MMP3	NM_002422	exon4	c.351-1G>T	.	ACAATCCTGTAGG	.	101.0	29.0	73.0	0.0	.	60	.	.	Atlas-SNP
NINJ2	4815	hgsc.bcm.edu	hg19	12	674565	674565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	NINJ2,colon,carcinoma,+2,2	NINJ2	NM_016533	exon3	c.C403T	p.R135W	TCAGCCGTGCTGC	.	42.0	14.0	112.0	1.0	.	19	.	.	Atlas-SNP
LPCAT3	10162	hgsc.bcm.edu	hg19	12	7087833	7087833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	LPCAT3	NM_005768	exon8	c.C805T	p.R269C	TGCAGCGGAACCA	.	111.0	25.0	162.0	0.0	.	33	.	.	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	hg19	12	53040621	53040621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	KRT2	NM_000423	exon7	c.C1372T	p.R458W	GCAGCCGCGCCAA	.	48.0	12.0	62.0	0.0	.	94	.	.	Atlas-SNP
AMHR2	269	hgsc.bcm.edu	hg19	12	53819694	53819694	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	AMHR2	NM_020547	exon6	c.G843A	p.L281L	GGAACTGCATCCC	.	47.0	5.0	50.0	0.0	.	61	.	.	Atlas-SNP
NACA	4666	hgsc.bcm.edu	hg19	12	57114040	57114040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	NACA	NM_001113203	exon3	c.A1274G	p.Y425C	AAAGGATAATGAT	.	102.0	22.0	110.0	0.0	.	131	.	.	Atlas-SNP
GRIP1	23426	hgsc.bcm.edu	hg19	12	66838478	66838478	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	GRIP1	NM_001178074	exon12	c.A1417T	p.M473L	TGGCCATCACTCT	.	133.0	12.0	183.0	0.0	.	106	.	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	hg19	12	80707414	80707414	+	Splice_Site	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	OTOGL	NM_173591	exon30	c.3580+2T>C	.	TTGTTGTAAGTAC	.	76.0	22.0	103.0	0.0	.	235	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	130185157	130185157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	TMEM132D,colon,carcinoma,0,1	TMEM132D	NM_133448	exon2	c.G166A	p.A56T	CGTCCGCGTTGTT	.	84.0	18.0	100.0	0.0	.	299	.	.	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	hg19	13	29600032	29600032	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	MTUS2	NM_001033602	exon1	c.C1227T	p.G409G	ACAGGGCTCTGCT	.	195.0	93.0	221.0	0.0	.	279	.	.	Atlas-SNP
PCDH8	5100	hgsc.bcm.edu	hg19	13	53422137	53422137	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	PCDH8	NM_002590	exon1	c.C435T	p.S145S	ACCCTCGGACACC	.	68.0	11.0	127.0	0.0	.	95	.	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	hg19	14	33046347	33046347	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	AKAP6	NM_004274	exon5	c.G2368T	p.E790X	CTGGATGAATTCA	.	146.0	26.0	131.0	0.0	.	308	.	.	Atlas-SNP
ADCK1	57143	hgsc.bcm.edu	hg19	14	78288800	78288800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ADCK1	NM_020421	exon3	c.A158G	p.Y53C	ACGACTACCTCAC	.	57.0	14.0	61.0	0.0	.	81	.	.	Atlas-SNP
TRPM1	4308	hgsc.bcm.edu	hg19	15	31360290	31360290	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TRPM1	NM_001252020	exon4	c.C336T	p.I112I	TACACGGATATAC	.	43.0	12.0	49.0	0.0	.	183	.	.	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	hg19	15	45443417	45443417	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DUOX1	NM_017434	exon24	c.C2985T	p.P995P	CCCTCCCCAGGAG	.	72.0	36.0	118.0	0.0	.	125	.	.	Atlas-SNP
TEX9	374618	hgsc.bcm.edu	hg19	15	56683537	56683537	+	Silent	SNP	T	T	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TEX9	NM_198524	exon7	c.T492A	p.I164I	CAAAATTGAAGGG	.	307.0	59.0	233.0	0.0	.	29	.	.	Atlas-SNP
SMAD6	4091	hgsc.bcm.edu	hg19	15	67073814	67073814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	SMAD6	NM_005585	exon4	c.C1432T	p.R478W	TACTCCCGGCAGT	.	54.0	8.0	68.0	0.0	.	14	.	.	Atlas-SNP
UACA	55075	hgsc.bcm.edu	hg19	15	70959216	70959216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	UACA	NM_018003	exon16	c.A3807G	p.I1269M	TGCAGATATTTCC	.	93.0	20.0	75.0	0.0	.	235	.	.	Atlas-SNP
C15orf39	56905	hgsc.bcm.edu	hg19	15	75500060	75500060	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	C15orf39	NM_015492	exon2	c.C1671T	p.G557G	GGAGGGCCCCTCA	.	70.0	32.0	149.0	0.0	.	64	.	.	Atlas-SNP
EFTUD1	79631	hgsc.bcm.edu	hg19	15	82512452	82512452	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	EFTUD1	NM_024580	exon13	c.A1411C	p.I471L	TTTCAATGGCACT	.	87.0	37.0	84.0	0.0	.	74	.	.	Atlas-SNP
SLX4	84464	hgsc.bcm.edu	hg19	16	3658812	3658812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	SLX4	NM_032444	exon2	c.A154G	p.K52E	GTTCTTTAAAGTC	.	88.0	18.0	135.0	0.0	.	173	.	.	Atlas-SNP
C16orf93	90835	hgsc.bcm.edu	hg19	16	30772547	30772547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	C16orf93	NM_001195620	exon2	c.C208T	p.P70S	GCAGCGGCGGCTG	.	146.0	32.0	271.0	0.0	.	33	.	.	Atlas-SNP
TRIM72	493829	hgsc.bcm.edu	hg19	16	31226233	31226233	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	TRIM72	NM_001008274	exon2	c.C174T	p.A58A	CCAGGCCCCCACG	.	25.0	6.0	39.0	0.0	.	32	.	.	Atlas-SNP
ABCC11	85320	hgsc.bcm.edu	hg19	16	48258272	48258272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ABCC11	NM_033151	exon4	c.T464C	p.M155T	CTCAGCATCACCA	.	71.0	8.0	91.0	0.0	.	177	.	.	Atlas-SNP
ZNF19	7567	hgsc.bcm.edu	hg19	16	71512898	71512898	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ZNF19	NM_006961	exon4	c.C44G	p.T15S	TCGAAGGTCACCA	.	50.0	19.0	88.0	0.0	.	46	.	.	Atlas-SNP
C17orf80	55028	hgsc.bcm.edu	hg19	17	71232524	71232524	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	C17orf80	NM_001100621	exon3	c.C903T	p.T301T	ACTTACCCTGGGA	.	145.0	58.0	183.0	0.0	.	37	.	.	Atlas-SNP
RNMT	8731	hgsc.bcm.edu	hg19	18	13746225	13746225	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	RNMT	NM_003799	exon9	c.A1146G	p.A382A	AATGGCAAAGAAG	.	599.0	97.0	817.0	0.0	.	42	.	.	Atlas-SNP
AP3D1	8943	hgsc.bcm.edu	hg19	19	2108726	2108726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	AP3D1	NM_001261826	exon31	c.G3512A	p.R1171H	ATGGAGCGGCTGT	.	65.0	4.0	148.0	0.0	.	81	.	.	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	hg19	19	6924851	6924851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	EMR1	NM_001974	exon15	c.T1954C	p.F652L	ACTCTCTTCCTCG	.	106.0	14.0	67.0	0.0	.	153	.	.	Atlas-SNP
ACTL9	284382	hgsc.bcm.edu	hg19	19	8807887	8807887	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ACTL9	NM_178525	exon1	c.T1165A	p.S389T	GCAGGGAGGCCAG	.	173.0	22.0	207.0	0.0	.	74	.	.	Atlas-SNP
ZNF431	170959	hgsc.bcm.edu	hg19	19	21350459	21350459	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ZNF431	NM_133473	exon4	c.T309C	p.D103D	GGTGGATGAACCC	.	171.0	78.0	94.0	0.0	.	71	.	.	Atlas-SNP
ZNF43	7594	hgsc.bcm.edu	hg19	19	21990788	21990788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ZNF43	NM_001256653	exon4	c.G2078T	p.G693V	GCTTTGCCACATT	.	44.0	6.0	36.0	0.0	.	152	.	.	Atlas-SNP
FFAR2	2867	hgsc.bcm.edu	hg19	19	35940790	35940790	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	FFAR2	NM_005306	exon1	c.G174C	p.L58L	CCTCCTGCTGCTG	.	39.0	4.0	58.0	0.0	.	39	.	.	Atlas-SNP
ATP4A	495	hgsc.bcm.edu	hg19	19	36042401	36042401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ATP4A	NM_000704	exon19	c.G2833A	p.V945I	TGAGGACATCGGC	.	107.0	32.0	133.0	0.0	.	123	.	.	Atlas-SNP
PSG6	5675	hgsc.bcm.edu	hg19	19	43420365	43420365	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	PSG6	NM_001031850	exon2	c.G339A	p.Q113Q	ATCCTCCTGTGTG	.	133.0	32.0	93.0	0.0	.	89	.	.	Atlas-SNP
CD3EAP	10849	hgsc.bcm.edu	hg19	19	45912584	45912584	+	Missense_Mutation	SNP	C	C	G	rs368905711	alternate_allele	TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	CD3EAP	NM_012099	exon3	c.C1358G	p.A453G	CTGAAGCCAGGGC	.	172.0	49.0	194.0	0.0	.	27	.	.	Atlas-SNP
EML2	24139	hgsc.bcm.edu	hg19	19	46124887	46124887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	EML2	NM_001193268	exon13	c.C1453T	p.R485C	TGATACGGTTCCC	.	171.0	30.0	256.0	0.0	.	64	.	.	Atlas-SNP
PNMAL2	57469	hgsc.bcm.edu	hg19	19	46997933	46997933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	PNMAL2	NM_020709	exon1	c.A790C	p.K264Q	CTTTCTTCGATTT	.	117.0	5.0	155.0	0.0	.	44	.	.	Atlas-SNP
CABP5	56344	hgsc.bcm.edu	hg19	19	48533839	48533839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	CABP5	NM_019855	exon6	c.A497T	p.E166V	ACAAACTCTGCAA	.	151.0	20.0	129.0	0.0	.	28	.	.	Atlas-SNP
HSPBP1	23640	hgsc.bcm.edu	hg19	19	55777301	55777301	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	HSPBP1	NM_012267	exon6	c.G846T	p.R282R	CTCTGTCCGCACC	.	209.0	31.0	175.0	0.0	.	24	.	.	Atlas-SNP
NLRP9	338321	hgsc.bcm.edu	hg19	19	56244026	56244026	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	NLRP9	NM_176820	exon2	c.C1171T	p.R391X	TTAGTCGGGCTCT	.	180.0	17.0	119.0	0.0	.	163	.	.	Atlas-SNP
SRXN1	140809	hgsc.bcm.edu	hg19	20	629465	629465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	SRXN1,NS,carcinoma,0,2	SRXN1	NM_080725	exon2	c.G307A	p.A103T	AGGCCGCGTAGCG	.	77.0	29.0	120.0	0.0	.	11	.	.	Atlas-SNP
APMAP	57136	hgsc.bcm.edu	hg19	20	24944625	24944625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	C20orf3,NS,carcinoma,0,1	APMAP	NM_020531	exon9	c.C1075T	p.P359S	ACCGCGGCACAAA	.	101.0	41.0	170.0	0.0	.	3	.	.	Atlas-SNP
ACSS1	84532	hgsc.bcm.edu	hg19	20	25028776	25028776	+	Missense_Mutation	SNP	C	C	T	rs113598729		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ACSS1	NM_001252677	exon2	c.G376A	p.V126I	AAGCAACGCTCTC	.	53.0	25.0	95.0	0.0	.	46	.	C|0.500;T|0.500	Atlas-SNP
FAM83D	81610	hgsc.bcm.edu	hg19	20	37576553	37576553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	FAM83D	NM_030919	exon3	c.A776G	p.Y259C	ATATCTACTATGC	.	87.0	18.0	83.0	0.0	.	60	.	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	hg19	20	40979351	40979351	+	Silent	SNP	G	G	A	rs377291418		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	PTPRT,colon,carcinoma,0,1	PTPRT	NM_007050	exon11	c.C1782T	p.Y594Y	TGTGTCGTACTCA	.	52.0	9.0	35.0	0.0	.	372	.	.	Atlas-SNP
DBNDD2	55861	hgsc.bcm.edu	hg19	20	44035182	44035182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DBNDD2	NM_018478	exon1	c.G91A	p.V31M	GAGCGAGTGAGCC	.	137.0	28.0	231.0	0.0	.	30	.	.	Atlas-SNP
CDH22	64405	hgsc.bcm.edu	hg19	20	44815546	44815546	+	Silent	SNP	T	T	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	CDH22	NM_021248	exon9	c.A1464T	p.R488R	CAGGATTCGGATC	.	69.0	14.0	83.0	0.0	.	112	.	.	Atlas-SNP
GART	2618	hgsc.bcm.edu	hg19	21	34889352	34889352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	GART	NM_001136005	exon16	c.G2051T	p.G684V	AATCCTCCACCAG	.	163.0	26.0	215.0	0.0	.	81	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37612121	37612121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DOPEY2	NM_005128	exon18	c.G2935C	p.A979P	GCGGCAGCCCAGG	.	34.0	6.0	57.0	0.0	.	184	.	.	Atlas-SNP
ELFN2	114794	hgsc.bcm.edu	hg19	22	37769363	37769363	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	ELFN2	NM_052906	exon3	c.A2212T	p.K738X	CACGCTTGGAGCG	.	101.0	11.0	138.0	0.0	.	89	.	.	Atlas-SNP
FRMPD4	9758	hgsc.bcm.edu	hg19	X	12736467	12736467	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	FRMPD4	NM_014728	exon16	c.C3522T	p.C1174C	CACCTGCGACCAT	.	102.0	26.0	204.0	0.0	.	214	.	.	Atlas-SNP
USP51	158880	hgsc.bcm.edu	hg19	X	55514722	55514722	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	USP51	NM_201286	exon2	c.T651C	p.R217R	AACGAAACGCTGG	.	270.0	96.0	499.0	0.0	.	71	.	.	Atlas-SNP
NONO	4841	hgsc.bcm.edu	hg19	X	70517737	70517737	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	NONO	NM_001145408	exon10	c.A1080C	p.E360D	GCAAGAAGAAATG	.	216.0	84.0	257.0	0.0	.	70	.	.	Atlas-SNP
NONO	4841	hgsc.bcm.edu	hg19	X	70517753	70517753	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	NONO	NM_001145408	exon10	c.C1096T	p.Q366X	CGGCGACAGCAGG	.	214.0	84.0	262.0	0.0	.	70	.	.	Atlas-SNP
CYSLTR1	10800	hgsc.bcm.edu	hg19	X	77528345	77528345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	CYSLTR1	NM_006639	exon3	c.G899T	p.G300V	AAGTTACCCCCAG	.	440.0	168.0	526.0	0.0	.	59	.	.	Atlas-SNP
GPR174	84636	hgsc.bcm.edu	hg19	X	78427214	78427214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	GPR174	NM_032553	exon1	c.G710A	p.G237E	GTGCAGGGGTATT	.	81.0	33.0	57.0	0.0	.	79	.	.	Atlas-SNP
CUL4B	8450	hgsc.bcm.edu	hg19	X	119672026	119672026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	CUL4B	NM_003588	exon16	c.T1945C	p.F649L	CTTTAAACATTCC	.	106.0	29.0	101.0	0.0	.	181	.	.	Atlas-SNP
GLUD2	2747	hgsc.bcm.edu	hg19	X	120181749	120181749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	GLUD2	NM_012084	exon1	c.G211A	p.E71K	ATGGTGGAGGGCT	.	782.0	88.0	1229.0	0.0	.	89	.	.	Atlas-SNP
OR13H1	347468	hgsc.bcm.edu	hg19	X	130678588	130678588	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	OR13H1	NM_001004486	exon1	c.C541G	p.L181V	GAGATTCTCTCCC	.	109.0	19.0	83.0	0.0	.	41	.	.	Atlas-SNP
SMIM10	644538	hgsc.bcm.edu	hg19	X	134125311	134125311	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	.	NM_001163438	exon1	c.G186C	p.K62N	GCGCAAGAACTTC	.	213.0	40.0	325.0	0.0	.	.	.	.	Atlas-SNP
VGLL1	51442	hgsc.bcm.edu	hg19	X	135632968	135632968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	VGLL1	NM_016267	exon4	c.C676T	p.L226F	ACCAGCCTTCCAA	.	147.0	20.0	183.0	0.0	.	41	.	.	Atlas-SNP
MEP1B	4225	hgsc.bcm.edu	hg19	18	29787402	29787403	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	MEP1B	NM_005925	exon8	c.734_735del	p.245_245del	.	.	132.0	24.0	176.0	0.0	.	54	.	.	Atlas-Indel,Pindel
CCDC15	80071	hgsc.bcm.edu	hg19	11	124857994	124857998	+	Frame_Shift_Del	DEL	CAAAT	CAAAT	-	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	CAAAT	CAAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	CCDC15	NM_025004	exon8	c.1871_1875del	p.624_625del	.	.	111.0	49.0	141.0	0.0	.	134	.	.	Atlas-Indel,Pindel
HMCN1	83872	hgsc.bcm.edu	hg19	1	186052065	186052066	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.,1	HMCN1	NM_031935	exon57	c.8856_8857insA	p.A2952fs	.	.	435.0	50.0	173.0	0.0	.	797	.	.	Atlas-Indel,Pindel
KANSL1	284058	hgsc.bcm.edu	hg19	17	44128014	44128015	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	.	NM_001193466	exon7	c.1905_1906insT	p.L635fs	.	.	76.0	28.0	92.0	0.0	.	.	.	.	Atlas-Indel,Pindel
CASP10	843	hgsc.bcm.edu	hg19	2	202074072	202074072	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	CASP10	NM_032977	exon9	c.1201delT	p.C401fs	.	.	72.0	20.0	88.0	0.0	.	95	.	.	Atlas-Indel,Pindel
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85450034	85450035	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.,4	LRRIQ1	NM_001079910	exon8	c.1463_1464insA	p.A488fs	.	.	280.0	114.0	287.0	0.0	.	512	.	.	Atlas-Indel,Pindel
DYX1C1	161582	hgsc.bcm.edu	hg19	15	55727133	55727134	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Y-A9GU-01A-11D-A382-10	TCGA-2Y-A9GU-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	263e7d45-46a8-4d9d-a82a-0324d7f9a3ff	745978d5-14c9-407e-9db8-1a158a071ae7	.	DYX1C1	NM_001033560	exon8	c.1017_1018insA	p.N339fs	.	.	86.0	20.0	144.0	0.0	.	54	.	.	Atlas-Indel,Pindel