Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCB5 340273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 20738174 20738174 + Splice_Site SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ABCB5 NM_001163941 exon17 c.2154+1G>A . ATAACCGTAAGTA . 65.0 16.0 81.0 0.0 . 158 ACAN 176 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 89401573 89401573 + Silent SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ACAN NM_001135 exon12 c.G5757A p.S1919S GCCCTCGGGAGCA . 123.0 64.0 90.0 0.0 . 25 ADAM12 8038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 127797193 127797193 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ADAM12 NM_021641 exon8 c.G719A p.R240Q ATTAATCGCTGCT . 112.0 12.0 122.0 0.0 . 716 ADAMTS2 9509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 178562943 178562943 + Silent SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b ADAMTS2,NS,carcinoma,0 ADAMTS2 NM_014244 exon13 c.C2052T p.D684D GAAGGCGTCCTTG . 94.0 47.0 108.0 1.0 . 228 ADCK3 56997 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 227171267 227171267 + Silent SNP C C A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ADCK3 NM_020247 exon9 c.C1095A p.A365A CGTGGCCCAGAGC . 96.0 57.0 92.0 1.0 . 361 AKT2 208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 40746009 40746009 + Silent SNP G G T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . AKT2 NM_001626 exon7 c.C582A p.V194V GTGAGCGACTTCA . 158.0 123.0 90.0 0.0 . 978 ANKRD30A 91074 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 37431161 37431161 + Missense_Mutation SNP A A G novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ANKRD30A NM_052997 exon7 c.A1168G p.R390G AAAGGAAGATCTA . 168.0 60.0 145.0 1.0 . 161 ARHGAP33 115703 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 36278734 36278734 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ARHGAP33 NM_052948 exon21 c.C2784T p.I928I TGAGATCGGGGCA . 638.0 30.0 225.0 0.0 . 229 ASB18 401036 broad.mit.edu;bcgsc.ca 37 2 237103519 237103519 + Missense_Mutation SNP T T C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ASB18 NM_212556 exon6 c.A1397G p.H466R TTTCAGTGCAAAA . 124.0 7.0 171.0 0.0 . 227 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 31319066 31319066 + Missense_Mutation SNP G G C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ASXL3 NM_030632 exon11 c.G1698C p.E566D AGTAGAGACCAGT . 89.0 17.0 104.0 0.0 . 49 ATR 545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 142232443 142232443 + Missense_Mutation SNP C C A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ATR NM_001184 exon26 c.G4541T p.C1514F ATGCTACAGCAGG . 209.0 65.0 297.0 0.0 . 1139 BDNF 627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 27679589 27679589 + Missense_Mutation SNP C C G novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . BDNF NM_001143810 exon3 c.G769C p.G257R GTTGGCCTTTTGA . 63.0 18.0 95.0 0.0 . 514 C1orf51 148523 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 150255801 150255801 + Missense_Mutation SNP C C A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . C1orf51 NM_144697 exon1 c.C124A p.H42N GGGGCCCATGGGC . 191.0 20.0 162.0 0.0 . 90 C22orf34 348645 bcgsc.ca;mdanderson.org 37 22 50016813 50016813 + RNA SNP A A C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . . . . . . AGACACAGTGAGA . 98.0 26.0 107.0 0.0 . . CASR 846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 121981009 121981009 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CASR NM_001178065 exon4 c.G1127A p.G376D TGAGAGGTCACGA . 104.0 47.0 139.0 0.0 . 97 CASS4 57091 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 55012412 55012412 + Missense_Mutation SNP G G C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CASS4 NM_020356 exon2 c.G229C p.D77H GCTGCAGACAGGC . 149.0 55.0 140.0 1.0 . 25 CDC73 79577 broad.mit.edu;bcgsc.ca 37 1 193094335 193094335 + Silent SNP C C A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CDC73 NM_024529 exon2 c.C225A p.V75V TTATGTCCGACGT . 119.0 8.0 160.0 0.0 . 1009 CFLAR 8837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 201994647 201994647 + Missense_Mutation SNP T T C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CFLAR NM_001202516 exon2 c.T59C p.M20T AGGAGATGCTGCT . 121.0 73.0 122.0 0.0 . 227 CHL1 10752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 443359 443359 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CHL1 NM_006614 exon27 c.G3436A p.D1146N GTAAAAGATGAAA . 57.0 16.0 85.0 0.0 . 583 CHN2 1124 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 29407574 29407574 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CHN2 NM_004067 exon3 c.C115T p.R39C GCACCTCGTCCCA . 37.0 14.0 32.0 0.0 . 229 CNTNAP3B 728577 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 43816717 43816717 + Missense_Mutation SNP G G A rs201844561 byfrequency TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . . NM_001201380 exon6 c.G823A p.V275I CATTCCGTCCTCA . 551.0 183.0 638.0 1.0 G|0.993;A|0.007 . COL15A1 1306 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 101748304 101748304 + Silent SNP C C A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . COL15A1 NM_001855 exon3 c.C558A p.P186P CATCCCCTTCCAG . 56.0 23.0 67.0 1.0 . 96 COL16A1 1307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 32133203 32133203 + Silent SNP G G A rs200246591 alternate_allele TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . COL16A1 NM_001856 exon52 c.C3330T p.T1110T TGACCCGGTGTAG . 65.0 17.0 105.0 0.0 G|0.999;T|0.000 98 COPA 1314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160264344 160264344 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . COPA NM_001098398 exon25 c.C2633T p.A878V CCAAGAGCATCAT . 234.0 133.0 212.0 0.0 . 92 CR2 1380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207651318 207651318 + Silent SNP T T A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CR2 NM_001006658 exon16 c.T2991A p.T997T TGTAACTCTGGAG . 163.0 40.0 196.0 0.0 . 232 CRYZL1 9946 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 34994363 34994363 + Missense_Mutation SNP T T G novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CRYZL1 NM_145858 exon4 c.A156C p.E52D CTTCATTTCTGCC . 313.0 119.0 387.0 0.0 . 90 CTU2 348180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 88781068 88781068 + Missense_Mutation SNP G G C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CTU2 NM_001012759 exon12 c.G1275C p.E425D GACTGAGACCCGG . 79.0 47.0 132.0 0.0 . 23 CUL3 8452 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 225367700 225367700 + Silent SNP T T C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CUL3 NM_001257198 exon10 c.A1485G p.Q495Q TAGATGTTGCCTG . 61.0 11.0 94.0 0.0 . 229 CUL7 9820 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43005507 43005507 + Silent SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . CUL7 NM_001168370 exon26 c.C5268T p.T1756T ATGGAAGGTGAGG . 75.0 11.0 61.0 0.0 . 229 DCDC5 100506627 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 30915799 30915799 + Missense_Mutation SNP G G T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . DCDC5 NM_020869 exon16 c.C2210A p.T737K ACCTCTGTATGTC . 78.0 40.0 106.0 1.0 . 23 DMGDH 29958 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 78320120 78320120 + Silent SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . DMGDH NM_013391 exon14 c.C2224T p.L742L ATTCCAGTCCAGC . 239.0 88.0 292.0 0.0 . 94 DMRTA2 63950 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 50886867 50886867 + Silent SNP C C G novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . . NM_032110 exon2 c.G342C p.A114A GCGCAGCGCCACC . 30.0 14.0 31.0 0.0 . . DOCK6 57572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 11363512 11363512 + Silent SNP C C A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . DOCK6 NM_020812 exon3 c.G255T p.L85L CAGCAGCAGCTCC . 97.0 16.0 100.0 0.0 . 93 DOCK7 85440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 63001217 63001217 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . DOCK7 NM_001271999 exon29 c.G3558A p.L1186L TCCTGCCAAATAA . 120.0 54.0 126.0 0.0 . 92 DRG2 1819 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 18003031 18003031 + Missense_Mutation SNP T T C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . DRG2 NM_001388 exon5 c.T461C p.V154A GAGAGGTGCAGAG . 153.0 65.0 101.0 0.0 . 91 DST 667 bcgsc.ca;mdanderson.org 37 6 56382403 56382403 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . DST NM_015548 exon51 c.G10276A p.D3426N CAGCATCAGCTGC . 98.0 19.0 81.0 1.0 . 523 DST 667 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 56382415 56382415 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . DST NM_015548 exon51 c.G10264A p.D3422N CTTGGTCAAACTA . 104.0 21.0 72.0 1.0 . 523 DYTN 391475 broad.mit.edu;ucsc.edu 37 2 207559510 207559510 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . DYTN NM_001093730 exon8 c.G811A p.V271I CAATGACAGGATG . 49.0 5.0 52.0 0.0 . 23 DZANK1 55184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 18393405 18393405 + Silent SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . . NM_001099407 exon13 c.C1317T p.F439F TGGGTAGAAGAGG . 159.0 42.0 98.0 0.0 . . ELAC2 60528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 12905669 12905669 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ELAC2 NM_018127 exon14 c.G1226A p.G409D GTGGGGCCCTCCT . 91.0 50.0 78.0 0.0 . 90 FAM47A 158724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 34149696 34149696 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . FAM47A NM_203408 exon1 c.C700T p.H234Y GGAGATGGGACAC . 101.0 22.0 101.0 0.0 . 134 FRYL 285527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 48512111 48512111 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . FRYL NM_015030 exon59 c.G8359A p.D2787N ATGTATCCAGGTG . 58.0 25.0 70.0 0.0 . 69 FXYD4 53828 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 43870995 43870995 + Missense_Mutation SNP C C A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . FXYD4 NM_001184963 exon6 c.C146A p.A49D TCCTGGCCATTGC . 128.0 38.0 96.0 1.0 . 90 GGT5 2687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 24628913 24628913 + Silent SNP G G C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . GGT5 NM_001099781 exon4 c.C474G p.P158P CGCCCAGGGCAGG . 78.0 36.0 84.0 0.0 . 71 GLUD1 2746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 88818994 88818994 + Missense_Mutation SNP A A G novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . GLUD1 NM_005271 exon10 c.T1315C p.Y439H CAAAGTAAGATAC . 141.0 15.0 165.0 0.0 . 90 GPR50 9248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 150348392 150348392 + Missense_Mutation SNP G G T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . GPR50 NM_004224 exon2 c.G337T p.V113F AGTGTGGTCGGCT . 193.0 93.0 223.0 0.0 . 176 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 89990343 89990343 + Silent SNP C C T rs201767905 TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . GPR98 NM_032119 exon33 c.C7770T p.S2590S TACTTCCGAAGAT . 64.0 29.0 66.0 0.0 C|0.999;T|0.000 103 GRAMD1B 57476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 123474218 123474218 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . GRAMD1B NM_020716 exon8 c.G706A p.V236M GACTACGTGCCCC . 59.0 11.0 101.0 0.0 . 69 GRIA3 2892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 122598767 122598767 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . GRIA3 NM_000828 exon13 c.G2128A p.E710K TCAGCGGAGCCAT . 233.0 104.0 317.0 0.0 . 134 HAO1 54363 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 7915180 7915180 + Silent SNP C C A rs200105698 alternate_allele TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . HAO1 NM_017545 exon2 c.G240T p.T80T CATGGCCGTAGCC . 92.0 17.0 89.0 0.0 C|0.999;G|0.001 93 HIST1H1C 3006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26056402 26056402 + Missense_Mutation SNP C C G novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . HIST1H1C NM_005319 exon1 c.G255C p.K85N CAGGCTCTTGAGA . 127.0 15.0 87.0 0.0 . 231 HIVEP3 59269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 42041241 42041241 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . HIVEP3 NM_024503 exon5 c.G5181A p.P1727P CCTCGCCGGCTCC . 27.0 15.0 64.0 0.0 . 157 IVL 3713 ucsc.edu;bcgsc.ca 37 1 152884007 152884007 + Silent SNP G G T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . IVL NM_005547 exon2 c.G1734T p.V578V GGAGGTGCAGTGG . 398.0 78.0 211.0 2.0 . 93 JAM3 83700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 134014848 134014848 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . JAM3 NM_032801 exon5 c.C571T p.R191C AGATTTCGCAATT . 71.0 22.0 200.0 0.0 . 91 JUND 3727 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 18391859 18391859 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . JUND NM_005354 exon1 c.G436A p.D146N GTAAATCCTCCAG . 44.0 9.0 16.0 0.0 . 846 KCNE4 23704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 223917618 223917618 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . KCNE4 NM_080671 exon2 c.C223T p.R75C GAGTCCCGTGCGG . 41.0 32.0 46.0 0.0 . 91 KIAA1217 56243 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 24809143 24809143 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . KIAA1217 NM_019590 exon11 c.C2269T p.L757F GCTTTCCTCCTGC . 121.0 12.0 101.0 0.0 . 98 LRIT1 26103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 85994095 85994095 + Missense_Mutation SNP T T C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . LRIT1 NM_015613 exon3 c.A629G p.Y210C AGGTCATAGAGTC . 168.0 46.0 163.0 0.0 . 90 MAP3K5 4217 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 137041704 137041704 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . MAP3K5 NM_005923 exon2 c.G472A p.D158N AGGCATCGCTCAT . 70.0 14.0 84.0 0.0 . 982 MARK2 2011 broad.mit.edu;bcgsc.ca 37 11 63662806 63662819 + Frame_Shift_Del DEL AAGAGGTGAGCACT AAGAGGTGAGCACT - novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 AAGAGGTGAGCACT AAGAGGTGAGCACT . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . MARK2 NM_001163296 exon2 c.230_234del p.77_78del CTGGGAAAGAGGT . 62.0 7.0 124.0 0.0 . 766 MBTPS1 8720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 84118638 84118638 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . MBTPS1 NM_003791 exon10 c.G1236A p.G412G ACTGGTCCCTGAG . 153.0 39.0 206.0 0.0 . 92 MIA 8190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 41281480 41281480 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . MIA NM_001202553 exon2 c.C33T p.I11I TGTCATCATCTTG . 122.0 74.0 62.0 0.0 . 651 MOCS1 4337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 39895145 39895145 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . MOCS1 NM_005943 exon1 c.C173T p.S58F AAGGCGGAGAAGG . 49.0 20.0 56.0 0.0 . 92 MRPL21 219927 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 68658837 68658837 + Silent SNP G G T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . MRPL21 NM_181514 exon7 c.C580A p.R194R TTATCCGGAGGAC . 47.0 12.0 88.0 0.0 . 90 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 8999473 8999473 + Missense_Mutation SNP A A G novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . MUC16 NM_024690 exon56 c.T40702C p.Y13568H CCCAGTATAGCTG . 104.0 17.0 100.0 0.0 . 566 MYBPC2 4606 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50957538 50957538 + Silent SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . MYBPC2 NM_004533 exon18 c.G1926A p.P642P CCCCCCGGAGGCT . 44.0 31.0 103.0 0.0 . 67 MYCBPAP 84073 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 48586029 48586029 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . MYCBPAP NM_032133 exon1 c.C123T p.G41G GCCGGGCGGCACC . 242.0 39.0 158.0 0.0 . 230 NCKAP5 344148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 133554289 133554289 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . . NM_207481 exon12 c.G821A p.R274H AAGAGACGTGAGT . 48.0 10.0 62.0 0.0 . . NCKAP5 344148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 133721442 133721442 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . . NM_207481 exon8 c.G430A p.E144K GCTTTTCCTGAAG . 50.0 32.0 64.0 0.0 . . NCOA3 8202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 46268408 46268408 + Missense_Mutation SNP C C G novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . NCOA3 NM_181659 exon15 c.C2795G p.P932R TGGAACCTATGAA . 161.0 46.0 102.0 0.0 . 229 NEU2 4759 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 233899058 233899058 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . NEU2 NM_005383 exon2 c.C434T p.A145V CTGATGCGGCCAT . 45.0 30.0 81.0 1.0 . 90 NINL 22981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 25434223 25434223 + Missense_Mutation SNP G G C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . NINL NM_025176 exon24 c.C4013G p.A1338G AGGTGGGCGTTCT . 115.0 26.0 126.0 0.0 . 94 NOG 9241 broad.mit.edu;mdanderson.org 37 17 54671633 54671633 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . NOG NM_005450 exon1 c.G49A p.V17I GTGGTGGTCCTGG . 52.0 11.0 41.0 0.0 . 90 PCDHA3 56145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140181914 140181914 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . PCDHA3 NM_031497 exon1 c.G1132A p.D378N GACCGCGACTCAG . 81.0 10.0 116.0 0.0 . 98 PCNX 22990 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 71514665 71514666 + Frame_Shift_Ins INS - - T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . PCNX NM_014982 exon22 c.4302_4303insT p.L1434fs CATGCTGTTGGAT . 74.0 13.0 63.0 0.0 . 91 PDE10A 10846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 165827145 165827145 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . PDE10A NM_001130690 exon13 c.G1122A p.T374T GTTCCGCGTGGTG . 90.0 57.0 125.0 0.0 . 519 PDE8B 8622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 76633096 76633096 + Silent SNP G G C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . PDE8B NM_001029852 exon6 c.G753C p.L251L TGAACTGATTCAA . 130.0 18.0 162.0 0.0 . 90 POLA2 23649 ucsc.edu;bcgsc.ca 37 11 65062035 65062035 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . POLA2 NM_002689 exon15 c.G1372A p.E458K GTGTCCGAGCCCT . 43.0 5.0 70.0 0.0 . 227 POU6F2 11281 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 39472733 39472733 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . POU6F2 NM_007252 exon8 c.G1084A p.G362S GCAAGCGGCACTC . 110.0 28.0 186.0 1.0 . 90 PPM1E 22843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 57046925 57046925 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . PPM1E NM_014906 exon4 c.C809T p.A270V ACTTTGCAGTGTT . 175.0 27.0 141.0 0.0 . 291 PSMF1 9491 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 1145687 1145687 + Missense_Mutation SNP A A C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . PSMF1 NM_006814 exon7 c.A779C p.H260P CAGACCATCTCCC . 111.0 66.0 75.0 1.0 . 90 PVR 5817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 45150523 45150523 + Missense_Mutation SNP G G C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . PVR NM_001135769 exon2 c.G108C p.Q36H CACCCAGGTGCCC . 83.0 12.0 67.0 0.0 . 90 RNF213 57674 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 78319225 78319225 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . RNF213 NM_001256071 exon29 c.G7090A p.D2364N AATGTCGACTTTG . 82.0 31.0 67.0 1.0 . 577 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 237540701 237540702 + Frame_Shift_Ins INS - - CA novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . RYR2 NM_001035 exon8 c.542_543insCA p.L181fs ATGACCTCATCTT . 87.0 18.0 74.0 0.0 . 158 SEMA5B 54437 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 122632773 122632773 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . SEMA5B NM_001256347 exon15 c.G2226A p.Q742Q ACTTCGCTGGCGG . 37.0 5.0 36.0 0.0 . 157 SORCS1 114815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 108412294 108412294 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . SORCS1 NM_001206572 exon18 c.C2321T p.S774F TTATTGGAAACCA . 100.0 49.0 84.0 0.0 . 153 SORCS3 22986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 106976760 106976760 + Missense_Mutation SNP T T G novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . SORCS3 NM_014978 exon19 c.T2614G p.F872V GCAAACTTCAGCC . 104.0 19.0 82.0 0.0 . 99 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158637739 158637739 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . SPTA1 NM_003126 exon15 c.G1947A p.E649E ACCACCCTCAATC . 106.0 72.0 79.0 0.0 . 142 ST6GALNAC3 256435 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 77093235 77093235 + Frame_Shift_Del DEL C C - novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ST6GALNAC3 NM_152996 exon4 c.722delC p.T241fs ATGACACCTACTG . 31.0 11.0 31.0 0.0 . 95 SUGP2 10147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 19136612 19136612 + Missense_Mutation SNP T T C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . SUGP2 NM_014884 exon3 c.A545G p.E182G AAACACTCTTTCT . 561.0 96.0 140.0 0.0 . 91 TBX1 6899 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 19751710 19751710 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . TBX1 NM_080647 exon5 c.C545T p.A182V TGGTGGCGGGGAA . 55.0 28.0 63.0 2.0 . 154 TCF20 6942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 42610029 42610029 + Missense_Mutation SNP G G C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . TCF20 NM_181492 exon1 c.C1283G p.P428R GAATTAGGACTGG . 111.0 26.0 119.0 0.0 . 95 TEX15 56154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 30705184 30705184 + Missense_Mutation SNP C C A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . TEX15 NM_031271 exon1 c.G1350T p.R450S CTGACCCCTATCT . 64.0 47.0 101.0 0.0 . 97 TFAP2D 83741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 50683121 50683121 + Missense_Mutation SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . TFAP2D NM_172238 exon2 c.C332T p.T111I AGCCCACCGACTT . 91.0 55.0 113.0 0.0 . 159 TLL1 7092 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 166976398 166976398 + Silent SNP A A G novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . TLL1 NM_012464 exon13 c.A1695G p.A565A CAAAGCAGGGTTT . 106.0 44.0 119.0 1.0 . 158 TMEM246 84302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 104238798 104238798 + Missense_Mutation SNP A A C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . . NM_032342 exon2 c.T577G p.Y193D GGCAATAGACATA . 81.0 19.0 94.0 0.0 . . TRIM60 166655 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 165962556 165962556 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . TRIM60 NM_001258025 exon4 c.C1332T p.F444F TTGTTTCACAGAA . 82.0 18.0 82.0 1.0 . 226 TRIM60 166655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 165962559 165962559 + Silent SNP A A T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . TRIM60 NM_001258025 exon4 c.A1335T p.T445T TTTCACAGAAGCC . 82.0 20.0 84.0 0.0 . 226 UNC79 57578 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 94155051 94155051 + Missense_Mutation SNP C C A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . . NM_020818 exon45 c.C6536A p.T2179N AAGATACCTTTGG . 32.0 10.0 109.0 0.0 . . XIRP2 129446 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 168105658 168105658 + Missense_Mutation SNP G G C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . XIRP2 NM_152381 exon9 c.G7756C p.E2586Q GAAAAGGAAATGC . 260.0 42.0 219.0 1.0 . 104 XKR7 343702 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 30584708 30584708 + Silent SNP C C T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . XKR7 NM_001011718 exon3 c.C1188T p.A396A GAACGCCGCGCTC . 78.0 17.0 69.0 0.0 . 137 ZAN 7455 ucsc.edu;bcgsc.ca 37 7 100361668 100361668 + Silent SNP G G T novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ZAN . . . . GCACGTGAAGGCC . 42.0 5.0 41.0 0.0 . 142 ZBED5 58486 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 10874768 10874768 + Silent SNP T T C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . . NM_021211 exon3 c.A1725G p.R575R TGGATTTCTAACC . 41.0 14.0 87.0 0.0 . . ZFPL1 7542 broad.mit.edu;bcgsc.ca 37 11 64854466 64854466 + Frame_Shift_Del DEL C C - novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ZFPL1 NM_006782 exon6 c.548delC p.A183fs GCCAGGCCCCCCG . 45.0 9.0 63.0 0.0 . 91 ZKSCAN3 80317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 28333341 28333341 + Missense_Mutation SNP G G A novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ZKSCAN3 NM_024493 exon6 c.G896A p.G299D AGGAGGGCAGGCT . 148.0 56.0 103.0 0.0 . 92 ZNF334 55713 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 45130323 45130323 + Missense_Mutation SNP G G C novel TCGA-UB-A7MA-01A-11D-A33Q-10 TCGA-UB-A7MA-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq efb3b274-562e-4ba8-908d-6343e61e5ea8 ee2cfb72-22e3-4676-be79-889217d8dc2b . ZNF334 NM_018102 exon5 c.C1655G p.T552S CAGTAGGTTCTCC . 77.0 15.0 60.0 0.0 . 92