Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB11	8647	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169828460	169828460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ABCB11	NM_003742	exon14	c.T1535C	p.I512T	TCTGCAATGGTGG	.	78.0	29.0	105.0	1.0	.	139
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48745041	48745041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ABCC3	NM_003786	exon12	c.G1558A	p.G520S	AGGCAGGGTGAGC	.	29.0	11.0	38.0	0.0	.	93
ALG1L2	644974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129811015	129811015	+	Missense_Mutation	SNP	C	C	T	rs183887858		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001136152	exon3	c.C203T	p.T68M	TGGTGACGCGTCT	.	70.0	25.0	133.0	0.0	C|0.999;T|0.001	.
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41552758	41552758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ANK1	NM_001142446	exon28	c.A3175G	p.K1059E	GCTCCTTCCACAC	.	21.0	17.0	43.0	0.0	.	716
AQP11	282679	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77301291	77301291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	AQP11	NM_173039	exon1	c.T254C	p.F85S	ACTTCTTCTCGCT	.	65.0	44.0	58.0	1.0	.	90
ATP10D	57205	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47563023	47563023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ATP10D	NM_020453	exon14	c.A2599T	p.S867C	GAAACCAGCATTG	.	44.0	17.0	79.0	2.0	.	93
BVES	11149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105577315	105577315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	BVES	NM_001199563	exon3	c.A290G	p.N97S	ACAGAGTTCCAGA	.	78.0	31.0	105.0	1.0	.	90
CA11	770	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49143430	49143430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CA11	NM_001217	exon4	c.T393A	p.S131R	CAGTTCACTGAGT	.	39.0	17.0	48.0	1.0	.	90
CABIN1	23523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24573522	24573522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CABIN1	NM_001199281	exon36	c.G6256A	p.A2086T	GAGGCTGCGAGTG	.	19.0	9.0	27.0	0.0	.	94
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40060133	40060133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CACNA1I	NM_021096	exon20	c.C3635A	p.T1212K	TCTTCACGGCCAT	.	46.0	16.0	53.0	0.0	.	135
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62467525	62467525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CADPS	NM_003716	exon22	c.C3046A	p.P1016T	CATTGGGTAGGTT	.	110.0	34.0	164.0	0.0	.	281
CD300C	10871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72540897	72540897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CD300C	NM_006678	exon2	c.T251A	p.I84N	TCCCTGATGGACA	.	50.0	15.0	96.0	0.0	.	90
CD68	968	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7483796	7483796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CD68	NM_001251	exon3	c.T580C	p.S194P	GGCATCTCTGTAC	.	22.0	10.0	45.0	1.0	.	90
CDKN1A	1026	broad.mit.edu;bcgsc.ca	37	6	36651926	36651926	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CDKN1A	NM_001220778	exon2	c.48delG	p.K16fs	CAGCAAGGCCTGC	.	19.0	7.0	44.0	0.0	.	872
CEP55	55165	ucsc.edu;bcgsc.ca	37	10	95276895	95276895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CEP55	NM_001127182	exon6	c.G883A	p.E295K	CATCTGGAAGATG	.	109.0	49.0	155.0	2.0	.	90
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175624301	175624301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CHRNA1	NM_001039523	exon2	c.A104C	p.Y35S	CTGCTGTAGTCTT	.	33.0	9.0	38.0	0.0	.	518
CILP2	148113	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19651990	19651990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CILP2	NM_153221	exon4	c.C527T	p.P176L	CAAGCCCCGCTGG	.	22.0	9.0	20.0	0.0	.	91
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41594950	41594950	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CYP2A13	NM_000766	exon2	c.C297T	p.S99S	GTTCAGCGGGCGA	.	49.0	20.0	92.0	0.0	.	93
DIO1	1733	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	54359901	54359901	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	DIO1	NM_001039715	exon1	c.A18G	p.P6P	CCAGCCAGGGCTG	.	68.0	19.0	102.0	2.0	.	90
E2F7	144455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	77427753	77427753	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	E2F7	NM_203394	exon8	c.A1193C	p.Q398P	CAGACTTGAATCT	.	67.0	36.0	113.0	0.0	.	228
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	110925746	110925746	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	EGF	NM_001963	exon22	c.G3259T	p.E1087X	GACACTGAGGATG	.	38.0	11.0	46.0	0.0	.	524
ENOX2	10495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129813524	129813524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ENOX2	NM_182314	exon7	c.A539G	p.Y180C	GACAGATACAGGG	.	49.0	43.0	83.0	0.0	.	131
FADD	8772	bcgsc.ca;mdanderson.org	37	11	70049785	70049785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FADD	NM_003824	exon1	c.G220T	p.D74Y	CGCCACGACCTGC	.	116.0	95.0	28.0	1.0	.	660
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71243558	71243558	+	Splice_Site	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FAM135A	NM_001105531	exon18	c.3377+1G>T	.	AATAAGGTATCTT	.	63.0	16.0	65.0	0.0	.	90
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46000930	46000930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FYCO1	NM_024513	exon12	c.A3542G	p.D1181G	TTACAGTCGAGGC	.	48.0	14.0	89.0	0.0	.	91
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94267913	94267913	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IDE	NM_004969	exon8	c.T1110C	p.F370F	AAACATAAAACCT	.	111.0	41.0	170.0	0.0	.	92
IFI27L2	83982	ucsc.edu;bcgsc.ca	37	14	94594892	94594892	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IFI27L2	NM_032036	exon3	c.G158C	p.G53A	GAAACACCACCCC	.	18.0	4.0	35.0	0.0	.	90
IL7	3574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	79652259	79652259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IL7	NM_000880	exon3	c.G206T	p.R69I	ATATGTCTTTTAA	.	690.0	84.0	266.0	1.0	.	226
ITM2A	9452	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78618536	78618536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ITM2A	NM_004867	exon3	c.C344T	p.A115V	ATGTCAGCCTCCT	.	69.0	54.0	110.0	1.0	.	131
JUNB	3726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12902979	12902979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	JUNB	NM_002229	exon1	c.C394A	p.Q132K	GAGGAGCAGGAGG	.	33.0	16.0	35.0	0.0	.	846
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33235673	33235673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIAA1522	NM_020888	exon6	c.G893T	p.R298L	TTGACCGTGTCTA	.	37.0	17.0	36.0	0.0	.	90
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	22471762	22471762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIAA1967	NM_021174	exon9	c.G862C	p.E288Q	GAAAAGGAGGCAG	.	23.0	15.0	70.0	0.0	.	92
KIF1A	547	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241664710	241664710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIF1A	NM_001244008	exon40	c.G4234A	p.G1412R	GGCTCCCACTGCC	.	14.0	6.0	30.0	0.0	.	91
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57957422	57957422	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIF5A	NM_004984	exon3	c.T237C	p.N79N	CTACAATGGCACC	.	116.0	39.0	183.0	2.0	.	517
KRT6B	3854	broad.mit.edu;bcgsc.ca	37	12	52845423	52845423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KRT6B	NM_005555	exon1	c.C440T	p.P147L	TTGAGGGGAGTCA	.	117.0	36.0	187.0	1.0	.	92
KRT6B	3854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52845422	52845422	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KRT6B	NM_005555	exon1	c.C441A	p.P147P	GTTGAGGGGAGTC	.	114.0	34.0	187.0	0.0	.	92
LIPC	3990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58830682	58830682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	LIPC	NM_000236	exon2	c.C239T	p.S80F	ACTCCTCCCTGCC	.	44.0	11.0	80.0	0.0	.	91
LYL1	4066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13211948	13211948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	LYL1	NM_005583	exon2	c.C38T	p.T13I	GTCATGGTGGGGC	.	37.0	10.0	35.0	0.0	.	658
MAATS1	89876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119466699	119466699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_033364	exon16	c.T2093C	p.V698A	AGTTGGTTTATAG	.	61.0	19.0	95.0	1.0	.	.
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	39748038	39748038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	MACF1	NM_012090	exon8	c.C702A	p.H234Q	CATTCACCGATAC	.	50.0	16.0	62.0	0.0	.	165
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204009591	204009591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NBEAL1	NM_001114132	exon31	c.G5030T	p.C1677F	AATATTGTAATTC	.	81.0	29.0	103.0	0.0	.	92
NFAT5	10725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69689669	69689669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NFAT5	NM_001113178	exon6	c.T1163C	p.V388A	TAGAAGTCGGCCT	.	23.0	15.0	67.0	0.0	.	90
NME8	51314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	37890296	37890296	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_016616	exon5	c.A157T	p.K53X	AAATTGAAAAATG	.	88.0	24.0	97.0	0.0	.	.
NOV	4856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120431544	120431544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NOV	NM_002514	exon4	c.G736A	p.V246M	TGCATGGTGCGGC	.	84.0	18.0	24.0	0.0	.	228
NSD1	64324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176562319	176562319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NSD1	NM_022455	exon2	c.T215G	p.L72R	TTCCACTGCGGAG	.	68.0	35.0	73.0	1.0	.	188
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	226378129	226378129	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_020864	exon3	c.264delG	p.V88fs	TTACGTGGGCAAA	.	55.0	26.0	101.0	0.0	.	.
OR13D1	286365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107457526	107457526	+	Missense_Mutation	SNP	C	C	T	rs182904893		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	OR13D1	NM_001004484	exon1	c.C824T	p.A275V	GTTCAGCGCACTC	.	114.0	19.0	150.0	1.0	C|0.999;T|0.000	70
PCLO	27445	broad.mit.edu;bcgsc.ca	37	7	82582627	82582636	+	Frame_Shift_Del	DEL	TCACTAAATT	TCACTAAATT	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	TCACTAAATT	TCACTAAATT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PCLO	NM_014510	exon5	c.7633_7642del	p.2545_2548del	CTGAAGTCACTAA	.	35.0	8.0	53.0	0.0	.	29
PCP4L1	654790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161254248	161254248	+	Silent	SNP	A	A	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001102566	exon3	c.A184C	p.R62R	CAGAAAAGGAAAA	.	164.0	53.0	215.0	1.0	.	.
PDE8A	5151	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85610300	85610300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PDE8A	NM_173454	exon3	c.G299T	p.C100F	GGGCATGTGAAAA	.	41.0	17.0	62.0	1.0	.	94
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85610299	85610299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PDE8A	NM_173454	exon3	c.T298A	p.C100S	AGGGCATGTGAAA	.	41.0	17.0	61.0	0.0	.	94
PDZRN3	23024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73453378	73453378	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PDZRN3	NM_015009	exon4	c.A1087C	p.T363P	CAAAGGTGATGTC	.	83.0	30.0	109.0	0.0	.	232
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	592654	592654	+	Silent	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PHRF1	NM_020901	exon6	c.C600G	p.L200L	TTTGCTCTGCGAC	.	26.0	8.0	40.0	0.0	.	22
PRKCQ	5588	broad.mit.edu;bcgsc.ca	37	10	6521125	6521125	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PRKCQ	NM_006257	exon12	c.C1182A	p.V394V	CAGGAAGACCTAG	.	99.0	7.0	113.0	0.0	.	1380
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76063483	76063483	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PRKRIR	NM_004705	exon5	c.G711A	p.Q237Q	TAGCATCTGCCTC	.	313.0	200.0	176.0	0.0	.	93
PRX	57716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40900384	40900384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PRX	NM_181882	exon7	c.A3875T	p.Q1292L	GCCACCTGGTACT	.	14.0	5.0	26.0	0.0	.	92
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40979316	40979316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PTPRT	NM_007050	exon11	c.C1817A	p.T606N	GTGATGGTCGTGT	.	40.0	18.0	48.0	0.0	.	664
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220406191	220406191	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	RAB3GAP2	NM_012414	exon2	c.T130G	p.W44G	CTTCCCAGTCTGT	.	174.0	76.0	219.0	0.0	.	90
ROR1	4919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	64643503	64643503	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ROR1	NM_005012	exon9	c.G1779T	p.L593L	TTTTCTGCACATT	.	48.0	19.0	56.0	0.0	.	1536
SC5D	6309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121177921	121177921	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001024956	exon5	c.G600A	p.L200L	CATCTTGGTTAAT	.	80.0	22.0	201.0	0.0	.	.
SHKBP1	92799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41096160	41096160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SHKBP1	NM_138392	exon16	c.G1600T	p.V534L	TGCTCCGTGCGCT	.	28.0	7.0	42.0	0.0	.	92
SHROOM3	57619	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77676213	77676213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SHROOM3	NM_020859	exon7	c.T4577G	p.L1526R	AACCTCTTCCCCC	.	25.0	9.0	31.0	0.0	.	93
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1204797	1204797	+	Silent	SNP	G	G	T	rs141600263	alternate_allele	TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	SNTG2,NS,carcinoma,+1	SNTG2	NM_018968	exon9	c.G600T	p.S200S	CCCATCGTCACCT	.	24.0	12.0	58.0	0.0	G|0.999;A|0.000	136
SOX10	6663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38379513	38379513	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SOX10	NM_006941	exon2	c.C279A	p.R93R	GTTGACGCGCACG	.	28.0	15.0	67.0	1.0	.	650
SPCS3	60559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	177241334	177241334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPCS3	NM_021928	exon1	c.G107A	p.S36N	ACAGGAGCGTCCC	.	30.0	12.0	38.0	0.0	.	23
SPRY2	10253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	80911669	80911669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPRY2	NM_005842	exon2	c.G172T	p.G58W	TAGGCCCCTCTGT	.	42.0	21.0	95.0	0.0	.	659
SPTBN5	51332	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42149449	42149449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPTBN5	NM_016642	exon51	c.C8503T	p.R2835W	GCAGCCGCCGGGC	.	19.0	5.0	34.0	0.0	.	91
TBL1X	6907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	9677338	9677338	+	Silent	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TBL1X	NM_001139466	exon14	c.C1287G	p.S429S	GGCATCCTGCTCG	.	52.0	33.0	93.0	0.0	.	131
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166981307	166981307	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TLL1	NM_012464	exon15	c.G1974A	p.V658V	TTCTGTGAAGTTT	.	54.0	17.0	95.0	0.0	.	158
TMEM106B	54664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12269401	12269401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM106B	NM_001134232	exon5	c.C538T	p.R180C	AAGGCACGCTTAA	.	236.0	73.0	309.0	1.0	.	90
TMEM129	92305	broad.mit.edu;bcgsc.ca	37	4	1720290	1720298	+	In_Frame_Del	DEL	GGGGCCTGG	GGGGCCTGG	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	GGGGCCTGG	GGGGCCTGG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM129	NM_001127266	exon2	c.261_269del	p.87_90del	GCCTCAGGGGCCT	.	23.0	8.0	43.0	0.0	.	68
TMEM45A	55076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100275609	100275609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM45A	NM_018004	exon3	c.G196T	p.A66S	GGCATGGCTGGGG	.	91.0	36.0	132.0	1.0	.	93
TMEM63B	55362	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44119668	44119668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM63B	NM_018426	exon19	c.C1759T	p.R587C	CTGCTGCGCATCC	.	39.0	6.0	79.0	1.0	.	92
TPM1	7168	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63336290	63336290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TPM1	NM_001018005	exon2	c.A179G	p.Y60C	ACAAATACTCTGA	.	42.0	15.0	59.0	1.0	.	90
TRIM56	81844	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100732207	100732207	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TRIM56	NM_030961	exon3	c.C1614T	p.G538G	CAACGGCGACTAC	.	25.0	8.0	27.0	0.0	.	226
TTC18	118491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	75013758	75013758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTC18	NM_145170	exon28	c.T3341C	p.V1114A	AAGCCAACTGTTT	.	41.0	25.0	69.0	0.0	.	92
TTC38	55020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46677505	46677505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTC38	NM_017931	exon7	c.A625G	p.I209V	TTATCTATTAACC	.	43.0	14.0	64.0	0.0	.	91
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219614829	219614829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTLL4	NM_014640	exon15	c.A2833G	p.I945V	GAGGATATCATTT	.	42.0	14.0	61.0	0.0	.	93
UBQLN3	50613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5530137	5530137	+	Missense_Mutation	SNP	G	G	A	rs201719446		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	UBQLN3,NS,carcinoma,0	UBQLN3	NM_017481	exon2	c.C652T	p.R218W	TCTGCCGCATAAT	.	50.0	17.0	64.0	1.0	G|0.999;A|0.000	93
USF1	7391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161011514	161011514	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	USF1	NM_001276373	exon6	c.G399T	p.S133S	ACTCCCCGATGTG	.	48.0	28.0	53.0	0.0	.	516
USP42	84132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6185161	6185161	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	USP42	NM_032172	exon10	c.T1005A	p.P335P	ATACCCTGAGTAT	.	74.0	21.0	119.0	1.0	.	659
XIRP2	129446	bcgsc.ca;mdanderson.org	37	2	168103401	168103401	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	XIRP2	NM_152381	exon9	c.A5499G	p.K1833K	ACCCAAAGAAGAG	.	31.0	10.0	58.0	0.0	.	104
XPNPEP1	7511	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	111642256	111642256	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	XPNPEP1	NM_001167604	exon10	c.C975T	p.L325L	TGGGGAGAGGTCA	.	41.0	18.0	59.0	1.0	.	94
ZBTB14	7541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5291933	5291933	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001243702	exon4	c.T274A	p.Y92N	ACATGTAGTTCAG	.	52.0	30.0	149.0	0.0	.	.
ZCWPW2	152098	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	28520305	28520305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZCWPW2	NM_001040432	exon4	c.C493A	p.P165T	ATATAGCCAGAAA	.	162.0	57.0	147.0	1.0	.	24
ZHX1	11244	ucsc.edu;bcgsc.ca	37	8	124265573	124265573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZHX1	NM_007222	exon3	c.G2614A	p.D872N	AGTCATCTGATTT	.	347.0	277.0	130.0	2.0	.	91
ZHX2	22882	bcgsc.ca;mdanderson.org	37	8	123965871	123965871	+	Silent	SNP	C	C	T	rs186468091		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZHX2	NM_014943	exon3	c.C2121T	p.A707A	CGATGCCGTAGCA	.	68.0	52.0	21.0	1.0	C|0.999;T|0.000	227
ZNF438	220929	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	31134175	31134175	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZNF438	NM_001143768	exon7	c.G2202A	p.Q734Q	GCCATTCTGATGA	.	111.0	32.0	154.0	1.0	.	154
ZNF708	7562	broad.mit.edu;mdanderson.org	37	19	21477158	21477158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZNF708	NM_021269	exon4	c.G610A	p.A204T	TAAAAGCTTTGCC	.	31.0	7.0	41.0	1.0	.	516
POR	5447	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75610852	75610853	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	TC	TC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	.	.	.	p.I271K	ACTTCATCACCTG	.	23.0	5.0	26.0	0.0	.	.