Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	48273680	48273680	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ABCA13	NM_152701	exon8	c.A829T	p.K277X	GATCTCAAATCCC	.	77.0	8.0	116.0	0.0	.	521
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62286773	62286773	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	AHNAK	NM_001620	exon5	c.A15116T	p.K5039I	CCCTGTTTTTTGG	.	126.0	28.0	138.0	0.0	.	109
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21230621	21230625	+	Frame_Shift_Del	DEL	GAAAA	GAAAA	-	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	GAAAA	GAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	APOB	NM_000384	exon26	c.9115_9119del	p.3039_3040del	TGGGCTGAAAAGA	.	123.0	38.0	164.0	0.0	.	175
APOH	350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	64210603	64210603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	APOH	NM_000042	exon7	c.A950C	p.D317A	GTGCCATCTATAC	.	130.0	9.0	197.0	0.0	.	90
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197071915	197071915	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ASPM	NM_018136	exon18	c.G6466C	p.G2156R	TTTTACCTTGATA	.	51.0	18.0	57.0	0.0	.	615
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	60687855	60687855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	BCL11A	NM_018014	exon4	c.G2192A	p.G731D	GGCCTGCCCGGGC	.	47.0	12.0	54.0	0.0	.	1149
C16orf59	80178	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2514087	2514087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	C16orf59	NM_025108	exon9	c.G1012A	p.G338R	CCCCCCGGAGCCT	.	92.0	9.0	97.0	0.0	.	90
CLVS2	134829	broad.mit.edu;bcgsc.ca	37	6	123319206	123319206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	CLVS2	NM_001010852	exon2	c.G284A	p.G95D	ACCCTGGCATCAA	.	127.0	9.0	137.0	0.0	.	27
CTC1	80169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8139600	8139600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	CTC1	NM_025099	exon6	c.G853A	p.E285K	GCAGTTCTGTCAG	.	36.0	7.0	39.0	0.0	.	93
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	3532454	3532454	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	FZR1	NM_001136198	exon10	c.C1048T	p.Q350X	GTGCAGCAGTACA	.	51.0	18.0	68.0	0.0	.	227
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158242731	158242731	+	Missense_Mutation	SNP	G	G	T	rs147349807		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	GRIA2	NM_000826	exon6	c.G862T	p.A288S	CCTGGAGCTCACA	.	81.0	23.0	109.0	0.0	G|1.000;T|0.000	515
HMCN1	83872	ucsc.edu;bcgsc.ca	37	1	186077704	186077704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	HMCN1	NM_031935	exon71	c.G10964T	p.W3655L	TTACTTGGCTCAG	.	53.0	5.0	76.0	0.0	.	113
HOXB7	3217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	46688035	46688035	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	HOXB7	NM_004502	exon1	c.G246T	p.P82P	GGAACTCGGCTCG	.	127.0	34.0	156.0	0.0	.	90
INSR	3643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7120659	7120659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	INSR	NM_000208	exon20	c.G3631A	p.G1211R	AGACCCCATCCTT	.	88.0	37.0	110.0	0.0	.	1381
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118281508	118281508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	KIAA1210	NM_020721	exon2	c.A338G	p.D113G	GCCAGATCCCCAA	.	62.0	9.0	55.0	0.0	.	67
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	44209519	44209519	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	LRPPRC	NM_133259	exon2	c.T204C	p.I68I	CTCTTGAATATCT	.	207.0	12.0	253.0	0.0	.	93
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	71329548	71329548	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	LRRC49	NM_001199017	exon15	c.C1749T	p.S583S	AGAATCCAAAGGA	.	349.0	31.0	407.0	0.0	.	91
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	6602579	6602579	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	NSUN2	NM_017755	exon18	c.T1992C	p.D664D	CGCAGAATCTGGT	.	72.0	25.0	91.0	0.0	.	91
OR56B4	196335	broad.mit.edu;bcgsc.ca	37	11	6129724	6129724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	OR56B4	NM_001005181	exon1	c.C716T	p.A239V	CAGAAGCAATGTC	.	118.0	8.0	107.0	0.0	.	68
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176709306	176709306	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PAPPA2	NM_020318	exon14	c.C4125T	p.D1375D	AGAGGACGAGGGG	.	69.0	9.0	81.0	0.0	.	548
PGBD4	161779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34394935	34394935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PGBD4	NM_152595	exon1	c.A203C	p.D68A	CAAGTGACTCAGG	.	64.0	25.0	63.0	0.0	.	90
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	PIK3CA,bladder,carcinoma,0	PIK3CA	NM_006218	exon21	c.A3140G	p.H1047R	ATGCACATCATGG	.	77.0	22.0	93.0	0.0	.	27752
PIWIL4	143689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94352999	94352999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PIWIL4	NM_152431	exon18	c.C2242A	p.Q748K	ACTGTACAGAACC	.	152.0	54.0	186.0	1.0	.	91
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	204214797	204214797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PLEKHA6	NM_014935	exon14	c.G1978T	p.E660X	GCCCCTCCATCAC	.	34.0	11.0	35.0	0.0	.	654
PTGDR	5729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52735240	52735240	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PTGDR	NM_000953	exon1	c.G708A	p.P236P	GCACCCGCGCTCC	.	48.0	12.0	34.0	0.0	.	524
RPL15	6138	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	23960001	23960001	+	Silent	SNP	C	C	T	rs35608037	byfrequency	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	RPL15	NM_001253383	exon3	c.C243T	p.Y81Y	AACTTACGGCAAG	.	33.0	11.0	35.0	0.0	C|0.992;T|0.008	91
SNED1	25992	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241979571	241979571	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	SNED1	NM_001080437	exon7	c.C1125T	p.C375C	TGTGTGCCAGGCC	.	51.0	6.0	59.0	0.0	.	72
SPCS1	28972	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52741737	52741737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	SPCS1	NM_014041	exon4	c.A419G	p.H140R	GCCGGCATCCTCT	.	383.0	28.0	428.0	2.0	.	90
TNKS	8658	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	9578010	9578010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	TNKS	NM_003747	exon12	c.A1876G	p.T626A	GGCTTCACAGCAG	.	121.0	33.0	132.0	1.0	.	660
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101679570	101679570	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	UTP20	NM_014503	exon4	c.T237C	p.N79N	ATTCAATCAGTTG	.	89.0	32.0	85.0	0.0	.	155
ZNF91	7644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23557476	23557476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ZNF91	NM_003430	exon2	c.G121T	p.V41L	ACATCACATTCCT	.	291.0	102.0	326.0	1.0	.	90