Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A1CF	29974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52575807	52575807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	A1CF	NM_001198820	exon10	c.A1124G	p.H375R	CTGAGATGTCCTT	.	177.0	50.0	205.0	0.0	.	68
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107607783	107607783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ABCA1	NM_005502	exon8	c.A788G	p.H263R	AGACTATGCAGCA	.	79.0	21.0	87.0	0.0	.	1016
ACTN3	89	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66330589	66330589	+	RNA	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ACTN3	.	.	.	.	CTACAAGGGATCC	.	104.0	18.0	113.0	0.0	.	90
ADORA2A	135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24837235	24837235	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ADORA2A	NM_000675	exon3	c.C1017T	p.N339N	TCTCAACGGCCAC	.	90.0	15.0	82.0	1.0	.	90
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105420945	105420945	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	AHNAK2	NM_138420	exon7	c.G843A	p.S281S	CTCTGACGAGCTG	.	48.0	28.0	74.0	0.0	.	47
ALDH2	217	broad.mit.edu;bcgsc.ca	37	12	112220988	112220988	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ALDH2	NM_000690	exon3	c.C246T	p.A82A	GAAGGCCGCCCGG	.	50.0	18.0	44.0	1.0	.	228
ANKRD52	283373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56638565	56638565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ANKRD52	NM_173595	exon24	c.G2593A	p.A865T	AGGCAGCGGCGTG	.	59.0	8.0	73.0	0.0	.	70
B4GALNT1	2583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58020643	58020643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	B4GALNT1	NM_001478	exon11	c.G1486A	p.D496N	CTCCGGCATCCCT	.	121.0	28.0	156.0	0.0	.	514
BACE2	25825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	42598204	42598204	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	BACE2	NM_138992	exon2	c.C324A	p.L108L	GATTCTCGTTGAC	.	200.0	14.0	160.0	0.0	.	92
BBX	56987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107491987	107491987	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	BBX	NM_001142568	exon11	c.C1419T	p.C473C	GACTTGCAAAAAG	.	265.0	101.0	255.0	0.0	.	94
BRD8	10902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137501703	137501703	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	BRD8,NS,carcinoma,-2	BRD8	NM_006696	exon12	c.C1311T	p.I437I	AGAATTGATGATC	.	61.0	18.0	79.0	0.0	.	91
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2774038	2774038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CACNA1C	NM_199460	exon37	c.C4424T	p.P1475L	GCATGCCAGGCAA	.	77.0	30.0	69.0	0.0	.	34
CAPN5	726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76834775	76834775	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CAPN5	NM_004055	exon13	c.G1782A	p.Q594Q	GGGCCAGGTGCAC	.	144.0	29.0	136.0	0.0	.	90
CCP110	9738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19551992	19551992	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CCP110	NM_001199022	exon5	c.A1932G	p.L644L	GGAGTTACTAAAA	.	336.0	133.0	298.0	0.0	.	90
CD300E	342510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72613454	72613454	+	Missense_Mutation	SNP	G	G	C	rs201462551	alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CD300E	NM_181449	exon2	c.C191G	p.T64S	CCCTTGGTCTCCA	.	164.0	18.0	150.0	0.0	G|0.999;A|0.000	156
CDH4	1002	broad.mit.edu;bcgsc.ca	37	20	60499390	60499390	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CDH4	NM_001794	exon11	c.1629-2A>G	.	CTCCGCAGATACT	.	47.0	5.0	85.0	0.0	.	282
CERS1	10715	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18994929	18994929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_198207	exon3	c.C557T	p.T186I	ATGAGAGTGACCA	.	202.0	22.0	163.0	1.0	.	.
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61764754	61764754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CHD7	NM_017780	exon29	c.G5842A	p.V1948M	GAGGAAGTGAGAG	.	127.0	53.0	112.0	0.0	.	141
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	403447	403447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CHL1	NM_001253388	exon11	c.T1372C	p.F458L	AGTGCTTTCTTAC	.	126.0	59.0	126.0	0.0	.	583
CHRND	1144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	233390976	233390976	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CHRND	NM_000751	exon1	c.T51C	p.C17C	GGTGTGTGGTAAG	.	215.0	24.0	197.0	0.0	.	155
CKAP5	9793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46817173	46817173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CKAP5	NM_001008938	exon13	c.G1621A	p.G541R	GAGGTCCTGGTTT	.	129.0	13.0	138.0	1.0	.	92
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140123517	140123517	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CLSTN2	NM_022131	exon4	c.G546A	p.E182E	GGTGGAGGCCATT	.	235.0	84.0	260.0	0.0	.	157
COG5	10466	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	106921825	106921827	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	COG5	NM_006348	exon14	c.1586_1588del	p.529_530del	TATCAACAGCAGC	.	114.0	19.0	98.0	0.0	.	93
CPQ	10404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	97847252	97847252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_016134	exon3	c.G485C	p.R162T	AGAGAAGGGCCTC	.	235.0	88.0	215.0	0.0	.	.
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207644362	207644362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CR2	NM_001006658	exon8	c.G1423A	p.G475R	GCTACAGGAAGGC	.	238.0	27.0	192.0	0.0	.	232
CSNK1G3	1456	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	122940520	122940520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CSNK1G3	NM_001044723	exon11	c.A1285G	p.T429A	GATGAAACCAAGT	.	266.0	54.0	290.0	1.0	.	358
DAPL1	92196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	159651944	159651944	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DAPL1	NM_001017920	exon1	c.58+2T>A	.	TGCAGGTAGGCTG	.	237.0	32.0	271.0	0.0	.	22
DHX16	8449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30627550	30627550	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DHX16	NM_003587	exon11	c.A1817T	p.Q606L	GGGGGCTGGGTCA	.	72.0	10.0	109.0	0.0	.	228
DIS3	22894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73336102	73336102	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DIS3	NM_014953	exon17	c.A2301C	p.L767F	AGACGCTAAGCCA	.	61.0	18.0	93.0	0.0	.	90
DNAI1	27019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34514529	34514529	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DNAI1	NM_012144	exon17	c.C1707T	p.D569D	CTGGGACCACACC	.	90.0	14.0	91.0	0.0	.	90
DOCK4	9732	broad.mit.edu;bcgsc.ca	37	7	111387428	111387428	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DOCK4	NM_014705	exon42	c.T4461C	p.I1487I	CTGACTAATCAGA	.	60.0	33.0	70.0	2.0	.	26
DOK6	220164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67425047	67425047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DOK6	NM_152721	exon7	c.G794A	p.R265H	TTCCTCGCAGCGC	.	97.0	42.0	85.0	1.0	.	92
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	117342745	117342745	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DSCAML1	NM_020693	exon15	c.G2972A	p.W991X	AAGTCCCAGGAAT	.	178.0	12.0	163.0	0.0	.	159
DYRK2	8445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	68051874	68051874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DYRK2	NM_006482	exon3	c.G1187A	p.G396E	TCCTTGGGGCCAG	.	113.0	23.0	107.0	1.0	.	861
EEF1A1	1915	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	74229722	74229722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EEF1A1	NM_001402	exon2	c.A28G	p.I10V	CGACAATGTTGAT	.	16.0	7.0	15.0	0.0	.	226
EEF1A2	1917	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62120486	62120486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EEF1A2	NM_001958	exon7	c.C1049G	p.P350R	TGCCCCGGGTGGT	.	78.0	25.0	73.0	1.0	.	90
EFHA2	286097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	16921654	16921654	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EFHA2	NM_181723	exon2	c.443delG	p.R148fs	AGAGGCGATTTCG	.	77.0	14.0	96.0	0.0	.	91
EFR3B	22979	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25359436	25359436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_014971	exon14	c.G1529A	p.C510Y	ACAAGTGCTCTCG	.	66.0	41.0	90.0	1.0	.	.
ESPNL	339768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	239039657	239039657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ESPNL	NM_194312	exon9	c.G2302T	p.A768S	CTAGGAGCCCGCC	.	10.0	5.0	18.0	0.0	.	69
EXOC6B	23233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	72692418	72692418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EXOC6B	NM_015189	exon18	c.G1851T	p.K617N	GTCAATCTTCTGG	.	136.0	57.0	149.0	0.0	.	68
FAM71C	196472	hgsc.bcm.edu;bcgsc.ca	37	12	100042218	100042218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM71C	NM_153364	exon1	c.C266T	p.A89V	TGCTGGCCCGACC	.	122.0	18.0	119.0	0.0	.	90
FAM71C	196472	hgsc.bcm.edu;bcgsc.ca	37	12	100042223	100042223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM71C	NM_153364	exon1	c.C271T	p.P91S	GCCCGACCAGCTG	.	120.0	19.0	111.0	0.0	.	90
FAM71C	196472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	100042220	100042221	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM71C	NM_153364	exon1	c.268_269del	p.90_90del	CTGGCCCGACCAG	.	120.0	18.0	116.0	0.0	.	90
FAM81B	153643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94749799	94749799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM81B	NM_152548	exon4	c.G442A	p.G148S	ACCCATGGCTTTC	.	174.0	33.0	165.0	2.0	.	92
FBXO4	26272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41927119	41927119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FBXO4	NM_033484	exon2	c.A194T	p.D65V	AGATTGATGTACA	.	67.0	10.0	70.0	0.0	.	227
FGD5	152273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14862981	14862981	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FGD5	NM_152536	exon1	c.G2403T	p.T801T	GTTCACGAAGCTG	.	80.0	32.0	81.0	0.0	.	231
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34156482	34156482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FHOD3	NM_025135	exon6	c.T580C	p.W194R	ATTCAGTGGCTGT	.	180.0	24.0	188.0	0.0	.	139
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159655441	159655441	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FNDC1	NM_032532	exon11	c.C3897A	p.R1299R	CTTGCGCCAGAGG	.	154.0	15.0	189.0	0.0	.	138
FRMPD2	143162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49392901	49392901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FRMPD2	NM_001018071	exon19	c.T2383C	p.Y795H	CTGAATACTCTCC	.	145.0	20.0	139.0	1.0	.	153
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46060284	46060284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	GABRG1	NM_173536	exon7	c.G866T	p.W289L	GACACCCAAGAAA	.	185.0	39.0	196.0	0.0	.	92
GALNT1	2589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33267144	33267144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	GALNT1	NM_020474	exon5	c.C854T	p.P285L	CTCTTCCTGTCAG	.	133.0	17.0	129.0	0.0	.	92
GPX1	2876	broad.mit.edu;bcgsc.ca	37	3	49395482	49395482	+	Missense_Mutation	SNP	G	G	C	rs75404373	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	GPX1	.	.	.	.	TTGCACGGGAAGC	.	56.0	10.0	68.0	1.0	G|0.333;C|0.667	68
HCN4	10021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73617654	73617654	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HCN4	NM_005477	exon5	c.C1722T	p.S574S	GGGCTCGCTTAGC	.	113.0	76.0	160.0	0.0	.	96
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71007177	71007177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HKDC1	NM_025130	exon9	c.G1093A	p.E365K	CCGTCTGAGGCTG	.	190.0	51.0	177.0	0.0	.	95
HMGCR	3156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74646693	74646693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HMGCR	NM_001130996	exon9	c.C860A	p.S287Y	ATACTTCTAAGGT	.	64.0	18.0	88.0	0.0	.	227
HMX2	3167	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	124908050	124908050	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HMX2	NM_005519	exon1	c.G156A	p.E52E	CTCGGAGGAGGAG	.	36.0	6.0	79.0	0.0	.	90
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114141440	114141440	+	Missense_Mutation	SNP	C	C	T	rs77459121		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HTR2C	NM_000868	exon6	c.C839T	p.P280L	CAAACCCTAACCA	.	137.0	51.0	153.0	0.0	C|0.999;T|0.001	133
HTRA3	94031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8295868	8295868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HTRA3	NM_053044	exon6	c.G991T	p.A331S	TCCTTTGCCATCC	.	139.0	17.0	121.0	0.0	.	91
HTRA3	94031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8295870	8295870	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HTRA3	NM_053044	exon6	c.C993T	p.A331A	CTTTGCCATCCCC	.	136.0	17.0	121.0	0.0	.	91
HYOU1	10525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118924950	118924950	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HYOU1	NM_001130991	exon9	c.679-2A>G	.	ATATTCTGTAGAG	.	79.0	15.0	86.0	0.0	.	90
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	53277365	53277365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	IQSEC2	NM_001111125	exon7	c.G2513A	p.R838Q	AACTTCCGGAGCG	.	158.0	11.0	150.0	0.0	.	178
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107977917	107977917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	IRS4	NM_003604	exon1	c.C1658T	p.A553V	CCACCTGCGGTGC	.	41.0	8.0	56.0	0.0	.	623
ITFG3	83986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	314814	314814	+	Silent	SNP	C	C	A	rs140101617	alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITFG3	NM_032039	exon13	c.C1452A	p.V484V	AGCCGTCCTGTTT	.	48.0	12.0	58.0	0.0	C|0.999;T|0.000	90
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48148866	48148866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITGA3	NM_005501	exon6	c.G943A	p.D315N	CTGGCAGACCTGA	.	26.0	7.0	21.0	0.0	.	229
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56092544	56092544	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITGA7	NM_001144996	exon6	c.G960C	p.L320L	GGAGGTCAGGCGC	.	152.0	26.0	175.0	0.0	.	229
ITPK1	3705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	93542960	93542960	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITPK1	NM_001142593	exon3	c.C100T	p.R34X	TCCCTCGCTTCCT	.	164.0	55.0	167.0	0.0	.	115
KDM5C	8242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53246991	53246991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KDM5C	NM_004187	exon4	c.G509T	p.G170V	TTGGCTCCAGACT	.	227.0	43.0	241.0	0.0	.	1272
KIF15	56992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44843455	44843455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF15	NM_020242	exon13	c.C1498A	p.L500M	CAAACTCTGCGAG	.	107.0	23.0	88.0	0.0	.	91
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104641634	104641634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF26A	NM_015656	exon12	c.C2509T	p.R837C	CACTTCCGCTGCA	.	18.0	8.0	77.0	0.0	.	24
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	245849809	245849809	+	Missense_Mutation	SNP	C	C	T	rs202113373		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF26B	NM_018012	exon12	c.C3524T	p.T1175M	TGGTGACGGTGCA	.	177.0	17.0	134.0	0.0	.	25
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	51901739	51901739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF2B	NM_032559	exon1	c.G1345T	p.A449S	GATTTAGCTGGGA	.	94.0	16.0	101.0	0.0	.	98
KLK1	3816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51322605	51322605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KLK1	NM_002257	exon5	c.G634A	p.G212S	AATCACCCTGGGA	.	79.0	5.0	63.0	0.0	.	226
KRT2	3849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53041619	53041619	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KRT2	NM_000423	exon6	c.T1143C	p.T381T	CCCGACAGTCACC	.	82.0	21.0	91.0	0.0	.	92
KRT39	390792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39114975	39114975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_213656	exon7	c.G1354A	p.G452R	GGGGTCCGCAGGC	.	204.0	43.0	210.0	1.0	.	.
KRTAP1-3	81850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39190602	39190602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_030966	exon1	c.T472C	p.C158R	AGCAGCAGACTGG	.	263.0	46.0	294.0	0.0	.	.
KRTAP19-1	337882	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31852613	31852613	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KRTAP19-1	NM_181607	exon1	c.C24T	p.Y8Y	GCCTCCGTAGTAG	.	171.0	34.0	197.0	1.0	.	68
KRTAP8-1	337879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32185533	32185533	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KRTAP8-1	NM_175857	exon1	c.C6G	p.L2L	GTCGCAGAGCATG	.	173.0	52.0	190.0	0.0	.	68
LTB4R	1241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24785243	24785243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	LTB4R	NM_181657	exon2	c.G386T	p.R129L	AGCTACGCACCAA	.	74.0	12.0	68.0	0.0	.	522
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160664981	160664981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	LY75	NM_002349	exon33	c.G4801A	p.G1601R	ATAATCCAAGCCA	.	104.0	20.0	94.0	0.0	.	90
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51638377	51638377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MAGED1	NM_001005333	exon4	c.T442C	p.Y148H	GGTGTCTATGATT	.	120.0	19.0	127.0	0.0	.	133
MANEA	79694	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	96034461	96034461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MANEA	NM_024641	exon2	c.A146G	p.H49R	AACTTCATCAACG	.	34.0	11.0	46.0	0.0	.	155
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	168810745	168810745	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MECOM	NM_001105077	exon15	c.2795+1G>T	.	GCTTTACCTCTCC	.	78.0	13.0	43.0	0.0	.	853
MIR452	574412	ucsc.edu;mdanderson.org	37	X	151128155	151128155	+	RNA	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	CTCAGTTTCCTCT	.	187.0	26.0	176.0	0.0	.	.
MIR639	693224	ucsc.edu;mdanderson.org	37	19	14640442	14640442	+	RNA	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	GTAGGGAGCCTGT	.	242.0	25.0	145.0	0.0	.	.
MKRN3	7681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23811328	23811328	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MKRN3	NM_005664	exon1	c.G399A	p.S133S	CGTTTCGCCGCCT	.	51.0	22.0	75.0	1.0	.	1011
MLH3	27030	hgsc.bcm.edu;bcgsc.ca	37	14	75505047	75505047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MLH3	NM_014381	exon6	c.G3639T	p.E1213D	ACCTGCCTCGCCA	.	65.0	4.0	64.0	0.0	.	228
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151860411	151860411	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MLL3	NM_170606	exon43	c.G10251A	p.Q3417Q	TACCTCCTGCATG	.	230.0	87.0	200.0	0.0	.	1398
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2257268	2257268	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MLST8	NM_001199174	exon6	c.G495T	p.L165L	GCAGCTGATCCCT	.	220.0	87.0	180.0	0.0	.	392
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3248325	3248325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MXRA5	NM_015419	exon4	c.A443C	p.N148T	AAGCCGTTGAAAG	.	327.0	56.0	362.0	1.0	.	136
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26409644	26409644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MYO3A	NM_017433	exon18	c.A1816T	p.N606Y	ATCTTGAATGTTG	.	82.0	27.0	113.0	0.0	.	1007
MYOD1	4654	ucsc.edu;bcgsc.ca	37	11	17742518	17742518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MYOD1	NM_002478	exon2	c.G700A	p.A234T	AACGAGGCGCCCA	.	145.0	70.0	142.0	2.0	.	154
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40103840	40103840	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	N4BP2	NM_018177	exon4	c.T375G	p.S125R	AGAGAGTGAAGAT	.	98.0	38.0	117.0	0.0	.	602
NMRAL1	57407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4519432	4519432	+	Silent	SNP	C	C	T	rs11557237		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	NMRAL1	NM_020677	exon3	c.G75A	p.L25L	ATCTTCCAGGAGT	.	81.0	36.0	73.0	0.0	.	91
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107799966	107799966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	NRCAM	NM_001037132	exon29	c.C3619T	p.H1207Y	CAGCATGGGCATC	.	90.0	38.0	89.0	0.0	.	156
OR2T10	127069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248756351	248756351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR2T10	NM_001004693	exon1	c.C719T	p.T240I	GAGCAGGTGGTGA	.	312.0	40.0	214.0	1.0	.	69
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55135547	55135547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR4A15	NM_001005275	exon1	c.A188T	p.Y63F	TAATCTACATGGT	.	123.0	17.0	108.0	0.0	.	70
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55371775	55371775	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR4C11	NM_001004700	exon1	c.G75T	p.V25V	TACAAACACTATT	.	84.0	15.0	95.0	0.0	.	69
OR5K4	403278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98073262	98073262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR5K4	NM_001005517	exon1	c.T565A	p.C189S	CTCTCCTGTACAG	.	94.0	21.0	79.0	0.0	.	68
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56114194	56114194	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR8K1	NM_001002907	exon1	c.T680G	p.I227S	TGTTTATTCTAGT	.	105.0	51.0	96.0	0.0	.	70
P4HA3	283208	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74013475	74013475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	P4HA3	NM_182904	exon3	c.A506G	p.D169G	TACAGGTCAGTGA	.	123.0	22.0	79.0	1.0	.	69
PARP10	84875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145059302	145059302	+	Missense_Mutation	SNP	C	C	A	rs199611396	alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PARP10	NM_032789	exon5	c.G868T	p.A290S	TCCCTGCACCCTG	.	81.0	13.0	75.0	0.0	.	526
PCDH7	5099	hgsc.bcm.edu;mdanderson.org	37	4	30726251	30726251	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCDH7	NM_032456	exon1	c.C3207T	p.P1069P	ATATCCCAGGGAG	.	39.0	12.0	49.0	0.0	.	229
PCDHB8	56128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140558833	140558833	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCDHB8	NM_019120	exon1	c.A1218G	p.T406T	ACTAACAGAGACA	.	508.0	98.0	533.0	0.0	.	131
PCDHGC5	56097	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	140871340	140871340	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCDHGC5	NM_032407	exon1	c.T2533A	p.L845M	AAGGGATTGAACT	.	119.0	11.0	144.0	0.0	.	25
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82791801	82791801	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCLO	NM_014510	exon1	c.G108T	p.A36A	CGGGATCGCGGTG	.	75.0	42.0	110.0	0.0	.	29
PDCL2	132954	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56458269	56458269	+	Splice_Site	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_152401	exon2	c.6+2T>G	.	ACCCTCACCTGCA	.	144.0	18.0	146.0	2.0	.	.
PITPNM3	83394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6381970	6381970	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PITPNM3	NM_031220	exon7	c.C674G	p.S225C	GGGGAGGAGATGG	.	81.0	36.0	114.0	0.0	.	228
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110447476	110447476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PKHD1L1	NM_177531	exon29	c.T3398G	p.V1133G	TTGCTGTGTCCAT	.	120.0	6.0	115.0	0.0	.	145
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153035892	153035892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PLXNB3	NM_001163257	exon10	c.C1955A	p.A652E	TGGAGGCGGCTGC	.	165.0	67.0	181.0	0.0	.	130
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153042728	153042728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PLXNB3	NM_001163257	exon31	c.G5062A	p.E1688K	GCCACCGAGGAGC	.	121.0	45.0	137.0	0.0	.	130
PPP1R42	286187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67926750	67926750	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_001013626	exon3	c.T207C	p.N69N	GGCATAATTCAGG	.	83.0	11.0	89.0	0.0	.	.
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47269978	47269978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PREX1	NM_020820	exon20	c.G2267A	p.G756D	TTGCTGCCATTGA	.	63.0	18.0	67.0	0.0	.	231
PSG11	5680	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	43528932	43528932	+	Missense_Mutation	SNP	C	C	A	rs111739483	byfrequency;alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_002785	exon2	c.G341T	p.R114L	TCCTCCCGGGTGA	.	364.0	44.0	292.0	0.0	C|0.977;T|0.023	.
PTX4	390667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1535964	1535964	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PTX4	NM_001013658	exon3	c.C1398T	p.C466C	GCAGGTGCAGTTG	.	66.0	11.0	58.0	0.0	.	90
PUF60	22827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144899577	144899577	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_078480	exon10	c.A1068T	p.P356P	CAGTGCTGGGGAC	.	187.0	84.0	151.0	0.0	.	.
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114424158	114424158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_001145346	exon1	c.G154A	p.A52T	GGCTTCGCGTTCG	.	398.0	69.0	357.0	0.0	.	.
RGPD4	285190	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	108488192	108488192	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RGPD4	NM_182588	exon20	c.G3732C	p.G1244G	CACTGGGCCCACA	.	508.0	80.0	493.0	0.0	.	2
RGPD4	285190	ucsc.edu;bcgsc.ca	37	2	108488196	108488196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RGPD4	NM_182588	exon20	c.A3736C	p.T1246P	GGGCCCACATTAG	.	527.0	86.0	519.0	1.0	.	2
RGPD4	285190	ucsc.edu;bcgsc.ca	37	2	108488198	108488198	+	Silent	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RGPD4	NM_182588	exon20	c.A3738C	p.T1246T	GCCCACATTAGAA	.	542.0	85.0	539.0	1.0	.	2
RNASE2	6036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21423958	21423958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RNASE2	NM_002934	exon2	c.A28G	p.I10V	TCCCAAATTTGTC	.	142.0	33.0	138.0	0.0	.	91
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10468548	10468548	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RP1L1	NM_178857	exon4	c.G3060A	p.Q1020Q	TGGGTCCTGGCCG	.	85.0	40.0	104.0	0.0	.	139
RRP1B	23076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45107710	45107710	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RRP1B	NM_015056	exon13	c.A1455T	p.E485D	CAGGGAAATGTTG	.	131.0	25.0	120.0	0.0	.	91
SALL3	27164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	76754132	76754132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SALL3	NM_171999	exon2	c.G2141T	p.R714L	GCGGCCGCGCCTT	.	75.0	17.0	133.0	0.0	.	155
SCNN1A	6337	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6457245	6457245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SCNN1A	NM_001159576	exon12	c.G1981A	p.A661T	CCTGAGCACCCCT	.	135.0	63.0	159.0	1.0	.	90
SESN2	83667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28598805	28598805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SESN2	NM_031459	exon4	c.G365A	p.R122H	CCGCCCGCCATCA	.	51.0	10.0	68.0	0.0	.	230
SLC22A14	9389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38357904	38357904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SLC22A14	NM_004803	exon9	c.C1622A	p.P541H	TCCTGCCCATCTT	.	125.0	25.0	87.0	0.0	.	90
SLC39A12	221074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18282170	18282170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SLC39A12	NM_001145195	exon9	c.G1483A	p.E495K	AACTCTGAATTAA	.	178.0	46.0	157.0	1.0	.	154
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1244795	1244795	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SLC6A18	NM_182632	exon11	c.C1569T	p.V523V	GGTGGTCAGTCCC	.	142.0	33.0	118.0	0.0	.	91
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2076069	2076069	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SMG6	NM_017575	exon13	c.G3240C	p.K1080N	CGGGTCCTTGTAC	.	127.0	57.0	134.0	0.0	.	228
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108367021	108367021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SORCS1	NM_001206572	exon23	c.C3068T	p.A1023V	AGCACCGCCACCA	.	78.0	24.0	90.0	0.0	.	153
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	24048842	24048842	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SOX5	NM_006940	exon2	c.T155G	p.L52R	AAGGGAAGGTGAA	.	120.0	37.0	133.0	0.0	.	655
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	24048849	24048849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SOX5	NM_006940	exon2	c.T148G	p.F50V	GGTGAAAGGCTGG	.	118.0	33.0	132.0	0.0	.	655
SPATA31D1	389763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84608679	84608679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_001001670	exon4	c.C3294A	p.D1098E	CGTAGACGAAGTC	.	53.0	8.0	103.0	1.0	.	.
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123195634	123195634	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	STAG2	NM_001042749	exon17	c.G1548A	p.R516R	AGATAGGCAAGAG	.	138.0	22.0	152.0	0.0	.	134
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70644911	70644911	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	STOX1	NM_152709	exon3	c.C1359T	p.P453P	ACACCCCAAGCTC	.	112.0	16.0	101.0	0.0	.	92
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152768757	152768757	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SYNE1	NM_033071	exon29	c.G3526C	p.E1176Q	TGATCTCCTGAAA	.	36.0	6.0	52.0	0.0	.	607
TENC1	23371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53448150	53448150	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TENC1	NM_015319	exon7	c.C477G	p.P159P	GCGGCCCGATGAA	.	48.0	4.0	144.0	0.0	.	92
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56700253	56700253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TEX14	NM_198393	exon4	c.C372A	p.N124K	CTTCGGGTTTTGA	.	129.0	56.0	135.0	0.0	.	810
TMEM176A	55365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150501448	150501448	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TMEM176A	NM_018487	exon6	c.556-2A>G	.	GTCCCCAGGCCTT	.	112.0	21.0	104.0	0.0	.	92
TMEM26	219623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	63212687	63212687	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TMEM26	NM_178505	exon1	c.G153A	p.A51A	GGTGAGCGCAGTC	.	212.0	27.0	207.0	0.0	.	90
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7574035	7574035	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	TP53,NS,haematopoietic_neoplasm,0	TP53	NM_000546	exon11	c.994-2A>G	.	CGGATCTGCAGCA	.	82.0	35.0	110.0	0.0	.	70225
TPRN	286262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140093940	140093940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TPRN	NM_001128228	exon1	c.C1224A	p.D408E	AGCCCGGTCAGCG	.	75.0	33.0	102.0	0.0	.	90
TRIO	7204	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14374421	14374421	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TRIO	NM_007118	exon19	c.G3300A	p.T1100T	GGTGACGCACATC	.	149.0	41.0	130.0	2.0	.	562
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122836092	122836092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TRPC3	NM_001130698	exon4	c.C1184T	p.A395V	GGATGAGCCACAA	.	69.0	13.0	104.0	0.0	.	92
TSKU	25987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76507685	76507685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TSKU	NM_015516	exon2	c.C1025A	p.T342N	TAGACACCCGGGA	.	38.0	11.0	55.0	0.0	.	90
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43220563	43220563	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTBK1	NM_032538	exon3	c.G195A	p.E65E	GGTGGAGTCAGCC	.	62.0	13.0	77.0	0.0	.	353
TTF2	8458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117644020	117644020	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTF2	NM_003594	exon23	c.A3363G	p.T1121T	GGGAACAGTAGAA	.	24.0	8.0	21.0	0.0	.	91
TTI2	80185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	33370119	33370119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_001265581	exon2	c.A13G	p.S5G	GAGCGCTGTCAAG	.	38.0	18.0	39.0	0.0	.	.
TTLL5	23093	broad.mit.edu;bcgsc.ca	37	14	76147887	76147887	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTLL5	NM_015072	exon4	c.182-1G>T	.	TCTTTAGAACGTT	.	47.0	4.0	56.0	0.0	.	92
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560835	179560835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTN	NM_001267550	exon114	c.G30964A	p.D10322N	GTTCGTCATAAGG	.	116.0	38.0	140.0	0.0	.	636
UGT1A8	54576	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	234526864	234526864	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	UGT1A8	NM_019076	exon1	c.G511T	p.G171X	GCCAGGGGAATAG	.	107.0	14.0	110.0	1.0	.	27
VIM	7431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	17271663	17271663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	VIM	NM_003380	exon2	c.A242T	p.Q81L	TCCTGCAGGACTC	.	98.0	34.0	107.0	0.0	.	291
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42454640	42454641	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	VPS39	NM_015289	exon22	c.2215_2216insC	p.S739fs	GAATGCTGGGGGG	.	103.0	35.0	135.0	0.0	.	229
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	1630783	1630783	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	WDR81	NM_001163809	exon1	c.C2530T	p.Q844X	CTGGACCAACTGT	.	66.0	26.0	109.0	0.0	.	91
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64813854	64813854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	XPOT	NM_007235	exon7	c.C494T	p.A165V	AGGAGGCTCGTAG	.	42.0	5.0	53.0	0.0	.	652
ZNF528	84436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	52919064	52919064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ZNF528	NM_032423	exon7	c.C959A	p.T320N	TTCATACTGGAGA	.	90.0	7.0	89.0	0.0	.	92
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57175244	57175244	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ZNF835	NM_001005850	exon2	c.G1323A	p.T441T	CTCGCCCGTGTGC	.	35.0	10.0	60.0	0.0	.	72
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	82320836	82320837	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	p.LV254FL	CAACTTGGTGGTT	.	166.0	52.0	326.0	0.0	.	.