Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq A2M 2 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 9221388 9221388 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . A2M NM_000014 exon34 c.A4314G p.P1438P TCTTACTGGGACA . 163.0 33.0 178.0 0.0 . 515 ABCB1 5243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 87148681 87148681 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ABCB1 NM_000927 exon24 c.T2888G p.L963W GCCACCAAGTAGG . 122.0 13.0 95.0 0.0 . 582 ACACA 31 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 35631111 35631111 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ACACA NM_198834 exon9 c.T981C p.Y327Y TTTCACATAACCT . 163.0 52.0 165.0 0.0 . 154 ACTL9 284382 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 8807893 8807893 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ACTL9 NM_178525 exon1 c.C1159T p.L387L AGGCCAGGATGGA . 102.0 29.0 107.0 0.0 . 154 ADCY2 108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 7773106 7773106 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ADCY2 NM_020546 exon18 c.A2276G p.Y759C TAAACTATGAGCT . 358.0 128.0 344.0 0.0 . 97 ADRBK2 157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 26117279 26117279 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ADRBK2 NM_005160 exon20 c.T1820C p.L607P AGATTCTCTCTGT . 336.0 113.0 266.0 0.0 . 955 AFF3 3899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 100210640 100210640 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . AFF3 NM_001025108 exon14 c.C1558A p.Q520K AGTACTGATTGCT . 244.0 72.0 279.0 0.0 . 230 ALG10B 144245 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 38714457 38714457 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ALG10B NM_001013620 exon3 c.T864C p.F288F TCATTTTCCTCAA . 382.0 137.0 343.0 0.0 . 93 ALOX5 240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 45891384 45891384 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ALOX5 NM_001256153 exon3 c.G431T p.R144L AATATCGGTGAGT . 132.0 42.0 150.0 0.0 . 228 AMFR 267 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 56443342 56443342 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . AMFR NM_001144 exon3 c.T507C p.F169F ATATTCAAATCGA . 66.0 19.0 71.0 0.0 . 1009 ANGPTL3 27329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 63070352 63070352 + Silent SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ANGPTL3 NM_014495 exon7 c.C1247C p.A416A ATGGTAAATATAA . 269.0 81.0 259.0 0.0 . 130 ANKRD26 22852 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 27337837 27337837 + Silent SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ANKRD26 NM_014915 exon17 c.T1707G p.T569T ATCATCAGTAGCA . 249.0 75.0 190.0 1.0 . 138 AP1G2 8906 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 24031766 24031766 + Frame_Shift_Del DEL C C - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . AP1G2 NM_003917 exon15 c.1447delG p.E483fs CATACTCCCCAAT . 120.0 37.0 116.0 0.0 . 45 ARFGEF1 10565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 68130369 68130369 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ARFGEF1 NM_006421 exon31 c.C4343T p.A1448V CATTCAGCTTTCT . 138.0 46.0 196.0 0.0 . 294 ARPP21 10777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 35763321 35763321 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ARPP21 NM_016300 exon14 c.A1220C p.K407T TGTCCAAAGCAGG . 206.0 47.0 255.0 0.0 . 93 AXIN2 8313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 63534326 63534326 + Nonsense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . AXIN2 NM_004655 exon5 c.C1195T p.R399X CCTCTCGGATCTG . 204.0 55.0 173.0 0.0 . 658 B4GALT3 8703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161141842 161141842 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . B4GALT3 NM_003779 exon8 c.C946A p.Q316K CATCTTGCGTCCA . 143.0 40.0 114.0 0.0 . 90 BCL6 604 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 187449531 187449531 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . BCL6 NM_001134738 exon3 c.G349T p.V117F CCACAACATGCTC . 179.0 65.0 155.0 0.0 . 848 BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 32654298 32654298 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . BIRC6 NM_016252 exon11 c.A2957C p.K986T TTTCTAAAGGAAT . 37.0 17.0 37.0 0.0 . 233 C11orf42 160298 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6231167 6231167 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . C11orf42 NM_173525 exon2 c.A160C p.K54Q CTGGTAAAACAGT . 105.0 34.0 105.0 0.0 . 91 C19orf24 55009 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 1275790 1275792 + In_Frame_Del DEL GCG GCG - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 GCG GCG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . C19orf24 NM_017914 exon1 c.242_244del p.81_82del GCTTCTGCGGCCT . 70.0 50.0 32.0 0.0 . 90 C21orf91 54149 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 19168929 19168942 + Frame_Shift_Del DEL TCTGGACATTAGCC TCTGGACATTAGCC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 TCTGGACATTAGCC TCTGGACATTAGCC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . C21orf91 NM_017447 exon3 c.621_634del p.207_212del GCTGGGTCTGGAC . 254.0 50.0 261.0 0.0 . 91 C3orf79 152118 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 153202472 153202472 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_001101337 exon1 c.T127C p.Y43H TTGCTTTACAAGG . 138.0 45.0 152.0 0.0 . . CAPZA2 830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 116544394 116544394 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CAPZA2 NM_006136 exon5 c.T383A p.L128Q CTGCTCTGAGAGC . 84.0 35.0 78.0 0.0 . 514 CCDC105 126402 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 15121855 15121855 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CCDC105 NM_173482 exon1 c.T218A p.F73Y GGCGCTTCCGCGT . 51.0 6.0 54.0 1.0 . 91 CCDC137 339230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 79639185 79639185 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CCDC137 NM_199287 exon5 c.G660A p.Q220Q GGACCAGGTAAGT . 140.0 77.0 128.0 0.0 . 69 CCNA2 890 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 122740571 122740571 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CCNA2 NM_001237 exon5 c.C958T p.L320L GATGCAGAAAGTA . 162.0 63.0 144.0 1.0 . 848 CCNG1 900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 162866370 162866370 + Silent SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CCNG1 NM_199246 exon3 c.A108C p.L36L GAGACTAATTGAG . 133.0 47.0 171.0 0.0 . 725 CD300LB 124599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72518964 72518964 + Missense_Mutation SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CD300LB NM_174892 exon4 c.G630C p.K210N AGACCCCTTCAAC . 307.0 86.0 229.0 0.0 . 91 CDC20B 166979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 54442574 54442574 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CDC20B NM_001170402 exon3 c.A237C p.Q79H TTGACTTTGCTGC . 114.0 42.0 125.0 0.0 . 90 CDH9 1007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 26881298 26881298 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CDH9 NM_016279 exon12 c.C2317A p.R773S TGAAACGAGGCCC . 139.0 44.0 128.0 0.0 . 99 CELSR2 1952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 109795272 109795272 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CELSR2 NM_001408 exon1 c.C2571T p.G857G AGGAGGCGACGAT . 226.0 100.0 158.0 0.0 . 526 CHD9 80205 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 53358774 53358774 + Silent SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CHD9 NM_025134 exon39 c.A8613C p.S2871S GTCGTCATCTGAG . 294.0 97.0 284.0 1.0 . 272 CHPF 79586 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220406586 220406586 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CHPF NM_024536 exon2 c.G640A p.G214S GGTGGCCAGTTAG . 125.0 39.0 68.0 0.0 . 90 CIB1 10519 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 90773726 90773726 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CIB1 NM_006384 exon7 c.T566G p.I189S AGGACAATCTTAA . 166.0 56.0 178.0 0.0 . 130 CLCN6 1185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 11896203 11896203 + Missense_Mutation SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CLCN6 NM_001286 exon18 c.A1973T p.K658M ACATCAAGTTCAA . 138.0 50.0 149.0 0.0 . 90 CMTM8 152189 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 32280486 32280486 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CMTM8 NM_178868 exon1 c.C22T p.R8C CGCGCCCGCTCGC . 225.0 92.0 210.0 1.0 . 90 CNPY2 10330 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 56708923 56708923 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CNPY2 NM_014255 exon2 c.C79T p.H27Y CACAGTGGAGATC . 136.0 53.0 125.0 0.0 . 68 CNTN2 6900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 205038645 205038645 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CNTN2 NM_005076 exon17 c.A2152G p.S718G GGACTCAGCGGAG . 156.0 36.0 124.0 0.0 . 91 CNTRL 11064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 123922548 123922548 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CNTRL NM_007018 exon30 c.T5057C p.V1686A TTCAGGTTGTTTT . 200.0 56.0 234.0 0.0 . 661 COBLL1 22837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 165542496 165542496 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . COBLL1 NM_014900 exon14 c.T3461G p.L1154R TGGCTGAGTCTTG . 93.0 34.0 96.0 0.0 . 93 CSNK1G2-AS1 255193 ucsc.edu;mdanderson.org 37 19 1953388 1953388 + RNA SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . . . . . CACTTCCCCCGGA . 170.0 56.0 176.0 0.0 . . CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41266100 41266100 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 CTNNB1,gallbladder,other,-1 CTNNB1 NM_001098209 exon3 c.T97C p.S33P CTGGACTCTGGAA . 329.0 98.0 398.0 0.0 . 24361 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41266110 41266110 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 CTNNB1,NS,carcinoma,0 CTNNB1 NM_001098209 exon3 c.A107C p.H36P GAATCCATTCTGG . 330.0 96.0 382.0 0.0 . 24361 CUL9 23113 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43174240 43174240 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CUL9 NM_015089 exon26 c.A5204G p.Y1735C GTTTCTACAGCCA . 183.0 70.0 210.0 1.0 . 529 DDIT3 1649 broad.mit.edu;bcgsc.ca 37 12 57911095 57911095 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 DDIT3,brain,glioma,-1 DDIT3 NM_001195054 exon3 c.A164T p.D55V TTTTCATCTGAAG . 75.0 5.0 87.0 0.0 . 1171 DHX15 1665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 24529578 24529578 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . DHX15 NM_001358 exon14 c.A2357C p.K786T TGAAGTTTGGCAA . 173.0 65.0 141.0 0.0 . 91 DLGAP4 22839 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 35125206 35125206 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . DLGAP4 NM_014902 exon7 c.G1747C p.E583Q AGTACTGAGTCTG . 178.0 61.0 177.0 1.0 . 94 DLX5 1749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 96651649 96651649 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . DLX5 NM_005221 exon2 c.G388A p.V130M CATTCACCATTCT . 67.0 33.0 79.0 0.0 . 515 DMBX1 127343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 46972704 46972704 + Missense_Mutation SNP G G A rs150745846 TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . DMBX1 NM_147192 exon1 c.G22A p.G8S GTGAACGGCTACT . 408.0 142.0 391.0 0.0 G|1.000;A|0.000 227 DNAH2 146754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7721651 7721651 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . DNAH2 NM_020877 exon68 c.T10409C p.I3470T TGCGCATTGGCGA . 236.0 70.0 185.0 0.0 . 102 EEPD1 80820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 36336620 36336620 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . EEPD1 NM_030636 exon7 c.T1334C p.I445T TCATTATCTTAGG . 110.0 42.0 91.0 0.0 . 68 EID3 493861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 104698075 104698075 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_001008394 exon1 c.C363T p.D121D TTGTGACTTTCTG . 251.0 80.0 218.0 0.0 . . EIF4G1 1981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 184040633 184040633 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . EIF4G1 NM_001194946 exon14 c.A1841G p.E614G ACCTAGAGGAGAA . 119.0 33.0 95.0 0.0 . 344 ELL2 22936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 95236720 95236720 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ELL2 NM_012081 exon6 c.A806G p.Q269R TCTCTTTGAAGCT . 158.0 47.0 190.0 0.0 . 90 ELL2 22936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 95236730 95236730 + Nonsense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ELL2 NM_012081 exon6 c.A796T p.K266X GCTCTTTAAAAAC . 149.0 45.0 192.0 0.0 . 90 ELP3 55140 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 28013470 28013470 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ELP3 NM_018091 exon11 c.T1112C p.M371T TTCCAATGCCTTT . 197.0 11.0 192.0 0.0 . 90 ENOSF1 55556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 683313 683313 + Missense_Mutation SNP A A C rs144642877 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ENOSF1 NM_202758 exon11 c.T872G p.F291C GGCTTGAACTTGG . 266.0 90.0 238.0 0.0 A|1.000;T|0.000 91 EPB49 2039 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 21924617 21924617 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . EPB49 NM_001978 exon3 c.A40G p.S14G CCCGGGAGCGTGA . 200.0 62.0 227.0 0.0 . 90 EPRS 2058 hgsc.bcm.edu;bcgsc.ca 37 1 220146578 220146578 + Splice_Site SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . EPRS NM_004446 exon30 c.4244+2T>C . GAAACTACCTTGT . 135.0 21.0 150.0 0.0 . 92 ERCC2 2068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 45860557 45860557 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ERCC2 NM_000400 exon15 c.A1450G p.T484A CCAGCGTCATGGT . 169.0 66.0 179.0 0.0 . 848 FAM133A 286499 broad.mit.edu;bcgsc.ca 37 X 92964586 92964586 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FAM133A NM_173698 exon4 c.A168G p.K56K TTCAAAAGCATTA . 55.0 4.0 61.0 0.0 . 130 FAM83C 128876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 33875240 33875240 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FAM83C NM_178468 exon4 c.C1342T p.R448C GGGAGCGAGGAAG . 86.0 35.0 101.0 0.0 . 92 FASN 2194 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 80039907 80039907 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FASN NM_004104 exon36 c.A6141C p.K2047N CCGGCGTTTCTCA . 76.0 16.0 39.0 0.0 . 90 FASN 2194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 80037282 80037282 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FASN NM_004104 exon42 c.C7349T p.T2450M CCACCCGTCTTGG . 185.0 51.0 150.0 0.0 . 90 FBN3 84467 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 8211044 8211044 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FBN3 NM_032447 exon3 c.G316A p.G106R GCGTCCCATCCGC . 269.0 15.0 274.0 0.0 . 100 FCF1 51077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 75190045 75190045 + Silent SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FCF1 NM_015962 exon5 c.A363C p.L121L GGCTCTAAGGTAG . 137.0 48.0 198.0 0.0 . 91 FCHO2 115548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 72377662 72377662 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FCHO2 NM_138782 exon23 c.A2033C p.K678T ACTGGAAATGTAG . 151.0 51.0 153.0 0.0 . 23 FLNB 2317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 58141694 58141694 + Nonsense_Mutation SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FLNB NM_001164317 exon42 c.C6873G p.Y2291X TAACTACGAGGTG . 69.0 20.0 75.0 0.0 . 593 FREM2 341640 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 39263846 39263886 + Frame_Shift_Del DEL CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FREM2 NM_207361 exon1 c.2365_2405del p.789_802del AGACCCCCGGGTC . 77.0 14.0 95.0 0.0 . 100 FSCB 84075 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 44974659 44974659 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FSCB NM_032135 exon1 c.C1532T p.P511L GCTAATGGAGATT . 100.0 32.0 148.0 1.0 . 587 GABRR1 2569 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 89899880 89899888 + Frame_Shift_Del DEL TCACAGCTT TCACAGCTT - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 TCACAGCTT TCACAGCTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GABRR1 NM_002042 exon6 c.651_655del p.217_219del GTCTACTCACAGC . 97.0 19.0 143.0 0.0 . 91 GAD1 2571 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 171713607 171713607 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GAD1 NM_000817 exon15 c.A1493G p.E498G ACAGAGAAGAATT . 87.0 25.0 67.0 0.0 . 91 GALNT1 2589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 33267146 33267146 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GALNT1 NM_020474 exon5 c.G856C p.V286L CTTCCTGTCAGGT . 88.0 21.0 135.0 0.0 . 92 GBGT1 26301 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 136029633 136029633 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GBGT1 NM_021996 exon7 c.C375T p.I125I GGACTGGATGAAA . 23.0 11.0 26.0 0.0 . 90 GBP3 2635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 89480301 89480301 + Silent SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GBP3 NM_018284 exon4 c.C357A p.A119A GAGGACGGCCAGG . 297.0 138.0 229.0 0.0 . 92 GJB5 2709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 35223387 35223387 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GJB5 NM_005268 exon2 c.C456A p.F152L CTCATTCTACCCC . 95.0 29.0 103.0 0.0 . 91 GNB5 10681 broad.mit.edu;bcgsc.ca 37 15 52416767 52416767 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GNB5 NM_016194 exon12 c.T1079C p.V360A ATGGAGACCCGGG . 188.0 10.0 168.0 0.0 . 227 GPR25 2848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 200843249 200843249 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GPR25 NM_005298 exon1 c.T1084G p.X362E TCCTGGTAGCTGC . 42.0 19.0 37.0 0.0 . 91 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 90079723 90079723 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GPR98 NM_032119 exon67 c.T13502C p.L4501P GCCACCTAGTGAG . 116.0 52.0 95.0 0.0 . 103 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 90079728 90079728 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GPR98 NM_032119 exon67 c.A13507C p.S4503R CTAGTGAGCAGAA . 119.0 21.0 103.0 0.0 . 103 GRIA1 2890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 153065884 153065884 + Nonsense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GRIA1 NM_001258021 exon8 c.C1159T p.R387X GGCATCCGAAAGG . 101.0 14.0 102.0 0.0 . 96 GRIN2A 2903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 10273990 10273990 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GRIN2A NM_000833 exon3 c.A279G p.A93A GATGCGTGCCCCG . 178.0 35.0 170.0 0.0 . 349 GTF3C3 9330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 197643775 197643775 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GTF3C3 NM_012086 exon10 c.T1235C p.L412P TCTACTAGTGTTG . 149.0 47.0 175.0 0.0 . 97 GUSB 2990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 65425954 65425954 + Missense_Mutation SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GUSB NM_000181 exon12 c.T1886A p.I629N TTGGCAATCTTCC . 276.0 85.0 308.0 0.0 . 90 HERC1 8925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 63943568 63943568 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . HERC1 NM_003922 exon53 c.C10430T p.A3477V TCCTCAGCATCCC . 75.0 32.0 90.0 0.0 . 666 HERC1 8925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 63967194 63967194 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . HERC1 NM_003922 exon38 c.A7193T p.Y2398F GTGAGATATGTTA . 260.0 83.0 317.0 0.0 . 666 HERC2 8924 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 28482110 28482110 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . HERC2 NM_004667 exon26 c.C4002T p.A1334A CTTACTGGCACAT . 306.0 107.0 300.0 0.0 . 234 HNRNPA2B1 3181 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 26237265 26237265 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . HNRNPA2B1 NM_031243 exon3 c.T130G p.W44G TTCCCCATTGTTC . 158.0 40.0 201.0 1.0 . 70 HSPA2 3306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 65008467 65008467 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . HSPA2 NM_021979 exon1 c.C900T p.I300I GTCCATCACGCGC . 89.0 34.0 65.0 0.0 . 226 HSPB2 3316 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 111784419 111784419 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . HSPB2 NM_001541 exon2 c.T349C p.F117L CGAGAGTTCTGCC . 145.0 60.0 128.0 1.0 . 659 IGFBP3 3486 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 45956856 45956856 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . IGFBP3 NM_001013398 exon2 c.G604A p.D202N GGGTATCTGTGCT . 169.0 60.0 191.0 0.0 . 1009 IGSF5 150084 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 41160116 41160116 + Splice_Site SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . IGSF5 NM_001080444 exon6 c.956+1G>A . TCAAAAGTAAGTT . 197.0 10.0 186.0 0.0 . 68 IL6ST 3572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 55259985 55259985 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . IL6ST NM_175767 exon6 c.C647A p.P216H TATACAGGATCAA . 225.0 78.0 198.0 0.0 . 290 INTS8 55656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 95892461 95892461 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . INTS8 NM_017864 exon27 c.A2987C p.X996S ACTTTTAAGCAGT . 107.0 36.0 88.0 0.0 . 90 ITGA2 3673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 52347345 52347345 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ITGA2 NM_002203 exon7 c.T735C p.Y245Y CCAATATGGTGGG . 165.0 50.0 158.0 0.0 . 226 ITIH1 3697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52823733 52823733 + Silent SNP G G C rs145442481 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ITIH1 NM_002215 exon19 c.G2184C p.T728T CGGCACGTACTTC . 110.0 40.0 112.0 0.0 G|1.000;A|0.000 93 ITM2B 9445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 48832330 48832330 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ITM2B NM_021999 exon4 c.T522C p.V174V CATTGTTATGCCA . 231.0 12.0 206.0 0.0 . 90 ITPR1 3708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 4776907 4776907 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ITPR1 NM_001168272 exon43 c.T5368C p.C1790R GTTCAGTGTCACC . 101.0 39.0 135.0 0.0 . 710 JARID2 3720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 15468853 15468853 + Missense_Mutation SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . JARID2 NM_004973 exon5 c.A574T p.T192S GATGAGACAGAAG . 209.0 90.0 175.0 0.0 . 228 KCNJ15 3772 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 39671772 39671772 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KCNJ15 NM_170736 exon3 c.A589G p.S197G TTGGTGATTCAGG . 67.0 16.0 61.0 0.0 . 157 KDR 3791 broad.mit.edu;bcgsc.ca 37 4 55948168 55948168 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KDR NM_002253 exon29 c.A3803G p.E1268G TTCAGCTCTTCTG . 135.0 6.0 170.0 1.0 . 2298 KEAP1 9817 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 10602811 10602812 + Frame_Shift_Ins INS - - CGTA novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KEAP1 NM_012289 exon3 c.767_768insTACG p.D256fs TCGCAGTCGTACT . 102.0 18.0 84.0 0.0 . 637 KEAP1 9817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10610398 10610398 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KEAP1 NM_012289 exon2 c.C312A p.S104R GACAGGGCTGGAT . 157.0 55.0 145.0 0.0 . 637 KIAA0556 23247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 27788950 27788950 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIAA0556 NM_015202 exon26 c.T4571G p.L1524R ACCTGCTTGTGTA . 95.0 33.0 122.0 0.0 . 141 KIAA0586 9786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 58895077 58895077 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIAA0586 NM_001244189 exon2 c.A131G p.H44R GAGATCATTTGGT . 257.0 82.0 225.0 0.0 . 23 KIAA0947 23379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 5454677 5454677 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIAA0947 NM_015325 exon11 c.T617C p.L206P TGAAACTGCTTCT . 110.0 39.0 87.0 0.0 . 48 KIAA1244 57221 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 138608320 138608320 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIAA1244 NM_020340 exon17 c.A2895C p.Q965H CACACAAGGTAAC . 30.0 13.0 29.0 0.0 . 228 KIAA1456 57604 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 12879028 12879028 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIAA1456 NM_020844 exon5 c.C840A p.S280R CAGTAGCACTGTA . 145.0 43.0 123.0 0.0 . 90 KIAA1755 85449 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 36848153 36848153 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIAA1755 NM_001029864 exon11 c.C2435T p.A812V GCAGTGGCTGCAG . 97.0 25.0 86.0 0.0 . 95 KIF13B 23303 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 28974375 28974375 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIF13B NM_015254 exon31 c.A3810G p.R1270R ACAGATTCTCTTG . 234.0 74.0 262.0 0.0 . 22 KIF13B 23303 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 28974384 28974384 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIF13B NM_015254 exon31 c.A3801G p.L1267L CTTGCGTAACACC . 247.0 76.0 274.0 0.0 . 22 KLB 152831 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 39409343 39409343 + Silent SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KLB NM_175737 exon1 c.A774T p.G258G CCCTGGAGAGAAG . 196.0 65.0 207.0 1.0 . 69 KPNA1 3836 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 122186176 122186176 + Missense_Mutation SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KPNA1 NM_002264 exon3 c.T230A p.M77K GGTGCCATCTCCA . 212.0 43.0 203.0 1.0 . 226 KPNA1 3836 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 122146558 122146558 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KPNA1 NM_002264 exon13 c.T1256C p.L419P TCTACTAGGTACC . 55.0 24.0 54.0 0.0 . 226 KRT40 125115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39140461 39140461 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_182497 exon3 c.C65T p.A22V GCAGGTGCACAAC . 140.0 59.0 109.0 0.0 . . KRT79 338785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 53227630 53227630 + Missense_Mutation SNP G G A rs140167313 TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KRT79 NM_175834 exon1 c.C415T p.R139C GAGTGCGCACTCG . 182.0 65.0 190.0 0.0 G|0.999;A|0.000 72 KSR1 8844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 25928943 25928943 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KSR1 NM_014238 exon12 c.A1124C p.K375T GCTGGAAATGCCT . 143.0 42.0 126.0 0.0 . 964 L1TD1 54596 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 62676374 62676374 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . L1TD1 NM_001164835 exon5 c.T1928C p.L643S GTGTCTTGGAAAT . 155.0 48.0 161.0 0.0 . 92 LACTB2 51110 hgsc.bcm.edu;broad.mit.edu 37 8 71581340 71581340 + Nonsense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LACTB2 NM_016027 exon1 c.C16T p.Q6X CGCGCTGCAGTAC . 98.0 7.0 101.0 0.0 . 227 LAMA3 3909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 21418835 21418835 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LAMA3 NM_001127717 exon26 c.A3184G p.N1062D TTTGTCAATCAAA . 258.0 74.0 314.0 0.0 . 100 LBR 3930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 225611703 225611703 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LBR NM_194442 exon2 c.A75G p.V25V AATTTCTACTTCA . 192.0 46.0 165.0 0.0 . 228 LEF1 51176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 109000723 109000723 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LEF1 NM_016269 exon7 c.G770A p.G257D GGGATGCCAGTTG . 141.0 58.0 174.0 0.0 . 721 LIAS 11019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 39460742 39460742 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LIAS NM_194451 exon1 c.C5A p.S2Y AAATGTCTCTACG . 59.0 11.0 52.0 0.0 . 90 LITAF 9516 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 11647418 11647418 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LITAF NM_001136473 exon3 c.G348T p.W116C GGACAGCCAGGTC . 50.0 12.0 48.0 0.0 . 227 LPHN1 22859 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 14261860 14261860 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LPHN1 NM_001008701 exon24 c.C4250A p.P1417H GGGCCGGGGGGTG . 91.0 42.0 40.0 0.0 . 523 LRP1 4035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57601983 57601983 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LRP1 NM_002332 exon77 c.G12022A p.V4008M ATTGTGGTGGACC . 128.0 37.0 108.0 0.0 . 596 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 170033099 170033110 + Splice_Site DEL CTAGTGGAAAAG CTAGTGGAAAAG - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CTAGTGGAAAAG CTAGTGGAAAAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LRP2 . . . . TGCTCACTAGTGG . 66.0 10.0 95.0 0.0 . 175 LRRC27 80313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 134161592 134161592 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LRRC27 NM_001143758 exon6 c.C658T p.P220S CAGGACCCAGAGG . 106.0 41.0 93.0 0.0 . 91 MAGI2 9863 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 78130892 78130893 + Splice_Site INS - - CT novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MAGI2 NM_012301 exon6 c.965+2->AG . AAACTCACTCAAT . 137.0 43.0 160.0 0.0 . 461 MAGI2 9863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 78130909 78130909 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MAGI2 NM_012301 exon5 c.A950C p.E317A TAGACTTCGCCCT . 171.0 61.0 190.0 0.0 . 461 MANF 7873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 51426503 51426503 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_006010 exon4 c.G532A p.A178T GCCAGTGCACGGA . 100.0 41.0 94.0 0.0 . . MAP10 54627 hgsc.bcm.edu;broad.mit.edu 37 1 232941381 232941381 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_019090 exon1 c.G612A p.L204L CCTGCTGGACTTC . 50.0 4.0 31.0 0.0 . . MBIP 51562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 36785921 36785921 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MBIP NM_016586 exon2 c.A227C p.E76A TGTTGTTCAAGTG . 230.0 63.0 217.0 0.0 . 658 MEOX2 4223 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 15725601 15725601 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 MEOX2,NS,carcinoma,+2 MEOX2 NM_005924 exon1 c.G427A p.A143T CGCACGCGGCCCC . 82.0 35.0 48.0 0.0 . 515 METTL7A 25840 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 51323788 51323788 + Frame_Shift_Del DEL T T - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . METTL7A NM_014033 exon2 c.590delT p.L197fs GGCACCTTCTGTT . 104.0 24.0 132.0 0.0 . 90 METTL7A 25840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 51323795 51323795 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . METTL7A NM_014033 exon2 c.T597C p.F199F TCTGTTTGATGGG . 97.0 26.0 112.0 0.0 . 90 MON2 23041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 62929480 62929480 + Missense_Mutation SNP T T C rs201313378 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MON2 NM_015026 exon14 c.T1891C p.S631P ACACTTTCCAACA . 180.0 61.0 206.0 0.0 T|0.999;G|0.001 514 MPP4 58538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 202549803 202549803 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MPP4 NM_033066 exon7 c.G558A p.G186G CGCCAGCCCACCG . 121.0 35.0 95.0 0.0 . 22 MTMR4 9110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 56584192 56584192 + Silent SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MTMR4 NM_004687 exon10 c.A903C p.A301A AGGAGCTGCTGTG . 114.0 18.0 80.0 0.0 . 91 MYOCD 93649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 12642602 12642602 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MYOCD NM_001146312 exon7 c.T674G p.L225R AGGGGCTTGGCCC . 55.0 25.0 57.0 0.0 . 93 N4BP1 9683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 48596057 48596057 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . N4BP1 NM_153029 exon2 c.C497T p.A166V GCATGGGCTTCAA . 178.0 58.0 147.0 0.0 . 22 NF1 4763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 29496954 29496954 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NF1 NM_001128147 exon5 c.T525C p.H175H TGTTCATGATATA . 84.0 28.0 64.0 0.0 . 3353 NLRP11 204801 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 56320455 56320455 + Silent SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NLRP11 NM_145007 exon5 c.T1521G p.L507L TGTCTCAAGAATC . 177.0 58.0 189.0 0.0 . 169 NOP2 4839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6673088 6673088 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NOP2 NM_001258309 exon7 c.C598T p.R200W GCTTCCGAGCAGC . 82.0 28.0 81.0 0.0 . 92 NOP56 10528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 2633966 2633966 + Missense_Mutation SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NOP56 NM_006392 exon3 c.C135G p.I45M CAGCATCGTTCGT . 261.0 44.0 303.0 0.0 . 92 NOXRED1 122945 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 77873885 77873885 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_001113475 exon3 c.T453C p.N151N GCAGATATTAGGC . 133.0 47.0 156.0 0.0 . . NPC1L1 29881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 44579886 44579886 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NPC1L1 NM_001101648 exon2 c.A110G p.D37G CATTCGTCATAGA . 77.0 27.0 79.0 0.0 . 94 NRD1 4898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 52289359 52289359 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NRD1 NM_002525 exon9 c.T1340C p.M447T AAAGTCATGTAAT . 185.0 72.0 202.0 0.0 . 90 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 228469861 228469861 + Missense_Mutation SNP T T C rs189169421 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 OBSCN_ENST00000359599,NS,carcinoma,0 OBSCN NM_001271223 exon36 c.T9712C p.F3238L GTGGTCTTCTCTG . 303.0 172.0 254.0 0.0 T|0.999;G|0.001 403 OR4Q3 441669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 20215878 20215878 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . OR4Q3 NM_172194 exon1 c.T292C p.C98R TCAGGATGCCTGG . 92.0 38.0 65.0 0.0 . 71 PACS2 23241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105818768 105818768 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PACS2 NM_001100913 exon3 c.A261C p.Q87H TGGACAAGTGGAG . 205.0 72.0 212.0 0.0 . 69 PAIP2 51247 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 138704424 138704429 + In_Frame_Del DEL CAAGAG CAAGAG - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CAAGAG CAAGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PAIP2 NM_001033112 exon4 c.321_326del p.107_109del CCAGGTCAAGAGC . 132.0 25.0 165.0 0.0 . 68 PC 5091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66618658 66618658 + Silent SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PC NM_000920 exon16 c.G2076C p.A692A TCCTGCCGCCTCC . 66.0 28.0 48.0 0.0 . 228 PDE1C 5137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 31793110 31793110 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PDE1C NM_001191058 exon19 c.C2198A p.A733E GAAGGTGCATAGG . 179.0 70.0 149.0 0.0 . 94 PDE4A 5141 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 10531543 10531543 + Silent SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PDE4A NM_001111307 exon1 c.C103A p.R35R CTGTGGCGGCAGC . 20.0 12.0 24.0 0.0 . 523 PDE4DIP 9659 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 144921895 144921895 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PDE4DIP NM_001002811 exon5 c.T1623C p.F541F CTCTACAAATTGC . 418.0 55.0 358.0 0.0 . 663 PDHX 8050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 35006206 35006206 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PDHX NM_003477 exon9 c.A1113C p.K371N AGATAAAGGCTTA . 131.0 28.0 140.0 0.0 . 226 PDK2 5164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48174927 48174927 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PDK2 NM_002611 exon2 c.T259C p.W87R CAGAGCTGGTGAG . 62.0 16.0 42.0 0.0 . 803 PECAM1 5175 hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 17 62407077 62407077 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_000442 exon1 c.G7A p.V3M TTTCCACGGCATC . 101.0 42.0 72.0 0.0 . . PECR 55825 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 216923626 216923626 + Silent SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PECR NM_018441 exon4 c.A498T p.P166P AGCTAATGGAAAT . 192.0 66.0 202.0 0.0 . 90 PGM3 5238 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 83896734 83896734 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PGM3 NM_001199917 exon5 c.A534G p.Q178Q ATGGAATTGACCT . 246.0 74.0 216.0 0.0 . 90 PHLDA1 22822 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 76425350 76425350 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PHLDA1 NM_007350 exon1 c.G172A p.D58N TGCCGTCCTCTTG . 155.0 66.0 122.0 0.0 . 90 PHLDB2 90102 hgsc.bcm.edu;bcgsc.ca 37 3 111632427 111632427 + Frame_Shift_Del DEL T T - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PHLDB2 NM_001134437 exon4 c.1678delT p.F560fs AGCTTCTTTACCC . 150.0 51.0 115.0 0.0 . 96 PI4KB 5298 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 151280253 151280253 + Nonsense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PI4KB NM_002651 exon5 c.G1015T p.E339X TGAATTCTCTCTC . 226.0 105.0 219.0 0.0 . 268 PIGV 55650 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 27124244 27124259 + Frame_Shift_Del DEL GTTCTCCAGTCACACG GTTCTCCAGTCACACG - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 GTTCTCCAGTCACACG GTTCTCCAGTCACACG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PIGV NM_001202554 exon4 c.1391_1406del p.464_469del AAACCTGTTCTCC . 117.0 23.0 150.0 0.0 . 91 PKD1 5310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2140513 2140513 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PKD1 NM_001009944 exon45 c.A12217G p.T4073A ACAGGGTAGAGAG . 76.0 28.0 52.0 0.0 . 91 PLCD1 5333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 38061825 38061825 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PLCD1 NM_001130964 exon2 c.A116T p.D39V TGTAGATCCTCAT . 100.0 30.0 124.0 0.0 . 226 PLK2 10769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 57752800 57752800 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PLK2 NM_006622 exon8 c.A1128G p.K376K TTTGTCTTTTTTG . 145.0 53.0 96.0 0.0 . 409 POU2F2 5452 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42599725 42599725 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . POU2F2 NM_001207025 exon10 c.G926A p.R309H GCGAAGCGGACGT . 77.0 11.0 88.0 0.0 . 227 PRKCZ 5590 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 2103755 2103755 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PRKCZ NM_002744 exon13 c.G1213T p.G405C GGCCCTGGTGACA . 104.0 25.0 124.0 0.0 . 1465 PRKD2 25865 hgsc.bcm.edu;broad.mit.edu 37 19 47214295 47214320 + Frame_Shift_Del DEL GCTGTAGGCGGAAAATAGGGGTGGAT GCTGTAGGCGGAAAATAGGGGTGGAT - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 GCTGTAGGCGGAAAATAGGGGTGGAT GCTGTAGGCGGAAAATAGGGGTGGAT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PRKD2 NM_016457 exon3 c.380_380del p.127_127del GCCGAGGCTGTAG . 111.0 14.0 189.0 0.0 . 759 PRKDC 5591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 48856412 48856412 + Splice_Site SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PRKDC NM_001081640 exon10 c.808+1G>T . ATCCTACCTGAGG . 133.0 40.0 136.0 0.0 . 1515 PSMA4 5685 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 78837279 78837279 + Missense_Mutation SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PSMA4 NM_001102667 exon6 c.A356T p.Q119L TCAAACAAGCTTA . 73.0 23.0 93.0 0.0 . 90 PTGR1 22949 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 114341085 114341086 + Nonsense_Mutation INS - - TT novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PTGR1 NM_001146108 exon7 c.642_643insAA p.Y214_F215delinsX ATCAAAATAACAA . 112.0 13.0 136.0 0.0 . 90 PTPN18 26469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 131117002 131117002 + Silent SNP G G T rs138461234 byfrequency;alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PTPN18 NM_014369 exon4 c.G312T p.T104T TGCCACGCAAGGA . 98.0 30.0 119.0 0.0 G|0.996;C|0.004 229 PXDNL 137902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 52323847 52323847 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PXDNL NM_144651 exon16 c.T2025C p.R675R CTTCACACGTTCC . 227.0 71.0 179.0 0.0 . 70 RAB40C 57799 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 16 677600 677600 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RAB40C NM_021168 exon6 c.G824C p.R275P GCTCGCGGAGTAA . 81.0 24.0 90.0 0.0 . 227 RAB4A 5867 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 229431599 229431599 + Missense_Mutation SNP G G T rs141754859 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RAB4A NM_004578 exon4 c.G232T p.V78L AGGTCCGTGACGA . 125.0 32.0 110.0 0.0 G|1.000;A|0.000 182 RANBP17 64901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 170346578 170346578 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RANBP17 NM_022897 exon11 c.T1235G p.F412C AGGCCTTTATCAC . 193.0 73.0 190.0 0.0 . 524 RASAL2 9462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 178269226 178269226 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RASAL2 NM_170692 exon3 c.T430C p.Y144H CCCGAGTACCCAC . 86.0 44.0 74.0 0.0 . 155 RCC1 1104 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 28861881 28861881 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RCC1 NM_001048194 exon7 c.G743C p.R248P GTGGCCGGCAAGG . 123.0 43.0 105.0 1.0 . 228 RIMS2 9699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 104898096 104898096 + Silent SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 RIMS2,colon,carcinoma,0 RIMS2 NM_001100117 exon4 c.T1269G p.S423S AAGTTCTTATGCA . 67.0 28.0 81.0 0.0 . 279 RNF146 81847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 127608258 127608258 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RNF146 NM_001242850 exon3 c.A500C p.K167T AGATTAAGCGAGA . 90.0 23.0 77.0 0.0 . 226 RPL35 11224 broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 127622525 127622525 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RPL35 NM_007209 exon3 c.C159T p.S53S GGCAATGGATTTC . 112.0 36.0 116.0 1.0 . 91 RPP40 10799 broad.mit.edu;bcgsc.ca 37 6 4996528 4996528 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RPP40 NM_006638 exon6 c.G686A p.G229E GGCGTTCCCTCCA . 97.0 4.0 101.0 0.0 . 90 RPRD2 23248 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 150437008 150437008 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RPRD2 NM_015203 exon10 c.A1417G p.S473G GGGGTCAGTCCTG . 57.0 21.0 34.0 0.0 . 23 RPS10 6204 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 34389539 34389539 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RPS10 NM_001203245 exon4 c.A368G p.D123G TCTCTGTCAGCTT . 113.0 34.0 104.0 0.0 . 90 RRS1 23212 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 67341483 67341483 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RRS1 NM_015169 exon1 c.G117A p.L39L CAACCTGCTGGCG . 202.0 77.0 161.0 0.0 . 90 RXFP2 122042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 32371491 32371491 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RXFP2 NM_130806 exon17 c.A1940C p.D647A TCTCTGATGCCAT . 229.0 94.0 186.0 0.0 . 90 SAMD3 154075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 130536349 130536349 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SAMD3 NM_001017373 exon3 c.A70G p.R24G GAAATCTATGAAC . 127.0 40.0 100.0 0.0 . 91 SART3 9733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 108932816 108932816 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SART3 NM_014706 exon7 c.T956G p.F319C ATCTCAAAATCGA . 162.0 63.0 145.0 0.0 . 91 SCAMP4 113178 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 1924232 1924242 + Frame_Shift_Del DEL GCCCGAGTACC GCCCGAGTACC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 GCCCGAGTACC GCCCGAGTACC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SCAMP4 NM_079834 exon7 c.639_649del p.213_217del CAGCCTGCCCGAG . 37.0 13.0 77.0 0.0 . 68 SCYL1 57410 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 65293085 65293085 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SCYL1 NM_020680 exon2 c.A152C p.K51T ATGTGAAGCCTGG . 122.0 38.0 109.0 0.0 . 333 SCYL3 57147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 169847817 169847817 + Silent SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SCYL3 NM_020423 exon3 c.G309T p.G103G ATAGATCCCAGCA . 391.0 208.0 260.0 0.0 . 361 SEPT6 23157 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 118827051 118827051 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SEPT6 NM_145802 exon1 c.A18G p.I6M GCGAGCTATATCG . 122.0 77.0 185.0 0.0 . 969 SH2B3 10019 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 111884570 111884570 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SH2B3 NM_005475 exon3 c.A746C p.K249T GGCCCAAGCTACA . 125.0 48.0 128.0 1.0 . 91 SIM2 6493 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 38117328 38117328 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SIM2 NM_005069 exon10 c.C1467T p.C489C TGAATGCCAGTGG . 128.0 38.0 116.0 0.0 . 90 SKIV2L2 23517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 54619962 54619962 + Nonsense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SKIV2L2 NM_015360 exon3 c.T275A p.L92X TAAGTTTGGCAGA . 115.0 51.0 85.0 0.0 . 92 SLC22A25 387601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 62931493 62931493 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SLC22A25 NM_199352 exon9 c.G1447T p.A483S GGGAAGCCAGGGC . 286.0 97.0 295.0 0.0 . 72 SLC2A2 6514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 170723139 170723139 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SLC2A2 NM_000340 exon7 c.T898C p.Y300H GTCGGTAGCTGGA . 198.0 65.0 215.0 0.0 . 515 SLC35B1 10237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 47781491 47781491 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SLC35B1 NM_005827 exon6 c.A626C p.N209T CAAAGGTTGATGT . 395.0 127.0 279.0 0.0 . 90 SLC44A4 80736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31833747 31833747 + Missense_Mutation SNP C C T rs149591801 TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SLC44A4 NM_025257 exon14 c.G1390A p.V464I CGAGGACGCATTG . 122.0 48.0 113.0 0.0 C|1.000;T|0.000 156 SLC9C1 285335 broad.mit.edu;ucsc.edu;mdanderson.org 37 3 111939985 111939985 + Nonsense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_183061 exon14 c.A1660T p.K554X CCTTCTTCTCACC . 145.0 42.0 164.0 0.0 . . SND1 27044 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 127338946 127338946 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SND1 NM_014390 exon4 c.A367G p.I123V GAAAACATTGCAG . 100.0 5.0 85.0 0.0 . 92 SP3 6670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 174820648 174820648 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SP3 NM_003111 exon4 c.A592C p.N198H CTTGATTTATACC . 193.0 63.0 208.0 0.0 . 227 SPECC1L 23384 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 24718668 24718668 + Missense_Mutation SNP A A G rs200752862 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SPECC1L NM_001145468 exon4 c.A1720G p.I574V GACCAGATAGAGA . 79.0 27.0 71.0 0.0 . 92 SPECC1L 23384 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 24718674 24718674 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SPECC1L NM_001145468 exon4 c.A1726C p.M576L ATAGAGATGAATC . 82.0 27.0 66.0 0.0 . 92 SPTLC2 9517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 78021746 78021746 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SPTLC2 NM_004863 exon8 c.G1073A p.G358D ACCACACCCCGGC . 127.0 46.0 164.0 0.0 . 92 SRBD1 55133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 45812829 45812829 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SRBD1 NM_018079 exon5 c.A733C p.I245L GTATAATGAAGGG . 104.0 25.0 134.0 0.0 . 90 SSBP2 23635 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 80762867 80762867 + Silent SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SSBP2 NM_001256732 exon9 c.A588T p.S196S CTGTAATGATAAC . 204.0 74.0 250.0 1.0 . 223 STON1 11037 hgsc.bcm.edu;bcgsc.ca 37 2 48818838 48818838 + Silent SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . STON1 NM_001198595 exon4 c.A1977T p.S659S TGGATCAGACCAA . 216.0 36.0 258.0 0.0 . 91 STON1 11037 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 48818835 48818835 + Frame_Shift_Del DEL A A - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . STON1 NM_001198595 exon4 c.1974delA p.G658fs GCTTGGATCAGAC . 217.0 36.0 256.0 0.0 . 91 STON1 11037 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 48818840 48818841 + Frame_Shift_Del DEL AC AC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . STON1 NM_001198595 exon4 c.1979_1980del p.660_660del GATCAGACCAAGA . 216.0 35.0 255.0 0.0 . 91 TAF1C 9013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 84216853 84216853 + Silent SNP C C T rs187518651 TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TAF1C NM_001243156 exon5 c.G405A p.A135A CACCCCCGCTCCC . 67.0 26.0 62.0 0.0 C|0.999;T|0.000 91 TAF6L 10629 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 62554224 62554224 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TAF6L NM_006473 exon11 c.G1325C p.R442P TCTACCGGGAGCT . 78.0 29.0 47.0 0.0 . 93 TAP1 6890 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 32821062 32821062 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TAP1 NM_000593 exon1 c.T532C p.S178P CCCATGAGATCAG . 155.0 54.0 91.0 1.0 . 91 TAP1 6890 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 32821435 32821435 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TAP1 NM_000593 exon1 c.C159T p.D53D GTCCCGGTCCCGG . 41.0 16.0 32.0 0.0 . 91 TEAD2 8463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49845749 49845749 + Missense_Mutation SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TEAD2 NM_001256660 exon12 c.G1188C p.Q396H AGGCAGCTGCCGC . 181.0 63.0 154.0 0.0 . 92 THAP2 83591 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 72070666 72070666 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . THAP2 NM_031435 exon3 c.C465T p.C155C AACTTGCCTACAA . 170.0 55.0 166.0 1.0 . 91 TJP1 7082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 30011153 30011153 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TJP1 NM_003257 exon21 c.A3193G p.S1065G TATAGCTTGAGGA . 355.0 103.0 424.0 0.0 . 95 TLE1 7088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 84300807 84300807 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TLE1 NM_005077 exon3 c.A130G p.K44E CCAATTTAAGGCT . 188.0 62.0 209.0 0.0 . 92 TMEM138 51524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 61131920 61131920 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TMEM138 NM_016464 exon2 c.T58C p.Y20H CTGTCCTATGACC . 152.0 50.0 132.0 0.0 . 90 TMEM33 55161 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 41941283 41941289 + Frame_Shift_Del DEL CATCAAA CATCAAA - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CATCAAA CATCAAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TMEM33 NM_018126 exon3 c.211_217del p.71_73del AGGCTGCATCAAA . 234.0 17.0 274.0 0.0 . 91 TMEM33 55161 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 41941291 41941298 + Frame_Shift_Del DEL ATTACCAC ATTACCAC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 ATTACCAC ATTACCAC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TMEM33 NM_018126 exon3 c.219_226del p.73_76del TCAAAGATTACCA . 221.0 17.0 276.0 0.0 . 91 TNFSF13B 10673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 108922722 108922722 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TNFSF13B NM_006573 exon2 c.C374T p.S125F GCAACTCCAGTCA . 93.0 33.0 97.0 0.0 . 659 TNNI2 7136 broad.mit.edu;mdanderson.org 37 11 1860927 1860927 + Translation_Start_Site SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TNNI2 . . . . CTCAGGATGGGAG . 94.0 27.0 131.0 0.0 . 90 TPR 7175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 186295352 186295352 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TPR NM_003292 exon41 c.G5905A p.E1969K CTTCCTCATCCTC . 140.0 73.0 135.0 0.0 . 228 TRIM71 131405 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 32932714 32932714 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TRIM71 NM_001039111 exon4 c.A2018G p.D673G ACAAGGACAATCA . 81.0 31.0 74.0 2.0 . 92 TRMT10B 158234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 37776352 37776352 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_144964 exon8 c.G794C p.R265T TGGTCAGAAACCA . 203.0 76.0 213.0 0.0 . . TSHZ2 128553 broad.mit.edu;bcgsc.ca 37 20 51872734 51872734 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TSHZ2 NM_173485 exon2 c.A2737G p.T913A GGCGGGACAAAAT . 104.0 6.0 99.0 0.0 . 232 TTC17 55761 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 43411274 43411274 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TTC17 NM_018259 exon3 c.A322G p.N108D AGACATAATAAAG . 220.0 68.0 199.0 1.0 . 95 TUBAL3 79861 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 5437356 5437356 + Silent SNP G G A rs141292428 byfrequency TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TUBAL3 NM_024803 exon3 c.C330T p.Y110Y TCGCGCGTAATTG . 112.0 31.0 134.0 0.0 G|0.998;A|0.002 91 TVP23C 201158 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 15406305 15406305 + Missense_Mutation SNP T T A rs141163711 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_145301 exon6 c.A704T p.Q235L GCCATCTGTTGGC . 132.0 36.0 148.0 0.0 T|1.000;C|0.000 . UBAC2 337867 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 99853763 99853763 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . UBAC2 NM_177967 exon1 c.G98A p.G33E GCGAGGGAGCGCA . 501.0 166.0 503.0 0.0 . 91 UBR4 23352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 19482082 19482082 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . UBR4 NM_020765 exon43 c.C6153A p.F2051L GAAAAGGAAGGTA . 244.0 68.0 223.0 0.0 . 612 UGT1A9 54600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 234581246 234581246 + Silent SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . UGT1A9 NM_021027 exon1 c.T666A p.R222R CCACCGTTTTTTC . 341.0 117.0 414.0 0.0 . 91 UGT1A9 54600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 234581248 234581248 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . UGT1A9 NM_021027 exon1 c.T668A p.F223Y ACCGTTTTTTCAA . 336.0 113.0 411.0 0.0 . 91 UPK3B 80761 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 76141019 76141019 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . UPK3B NM_030570 exon2 c.C446T p.A149V TTCCGGCCTCCCC . 416.0 109.0 415.0 0.0 . 90 URB2 9816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 229779359 229779359 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . URB2 NM_014777 exon5 c.G3714A p.G1238G GGTTGGGACGACA . 253.0 127.0 208.0 0.0 . 174 VAV3 10451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 108322079 108322079 + Silent SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . VAV3 NM_006113 exon3 c.T357A p.P119P TGCTATAGGTGTT . 112.0 39.0 83.0 0.0 . 1339 VEGFC 7424 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 177608449 177608449 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 VEGFC,NS,carcinoma,-1 VEGFC NM_005429 exon6 c.C1037G p.T346S GGGCAGGTTCTTT . 230.0 89.0 257.0 0.0 . 710 VPS51 738 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 64877952 64877952 + Splice_Site SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_013265 exon8 c.1879-2A>G . ACCACCAGGTGGG . 148.0 59.0 149.0 0.0 . . VPS53 55275 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 531471 531479 + Frame_Shift_Del DEL TCTAGTAAA TCTAGTAAA - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 TCTAGTAAA TCTAGTAAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . VPS53 NM_001128159 exon9 c.688_688del p.230_230del CTGGTCTCTAGTA . 72.0 20.0 103.0 0.0 . 90 WBSCR22 114049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 73105342 73105342 + Silent SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . WBSCR22 NM_001202560 exon6 c.C459A p.L153L TGTTCTCGTGAGT . 329.0 117.0 361.0 0.0 . 90 WDR65 149465 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 43638463 43638463 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . WDR65 NM_001195831 exon2 c.T39C p.G13G TTTTGGTCTTCGA . 170.0 27.0 158.0 0.0 . 91 WWC3 55841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 10094158 10094158 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . WWC3 NM_015691 exon15 c.A1918G p.I640V AGCCACATCCGAG . 121.0 79.0 112.0 0.0 . 134 ZBTB16 7704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 114113007 114113007 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZBTB16 NM_006006 exon5 c.C1572T p.N524N GTGCAACCGCACC . 124.0 49.0 126.0 0.0 . 659 ZC3H8 84524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 112989510 112989510 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZC3H8 NM_032494 exon7 c.A748C p.K250Q AAAACTTACAAGG . 74.0 24.0 63.0 0.0 . 226 ZFP37 7539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 115805892 115805892 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZFP37 NM_003408 exon4 c.C1006G p.L336V CAACAAGGTGTGA . 128.0 46.0 177.0 0.0 . 92 ZFP82 284406 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36884388 36884388 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZFP82 NM_133466 exon5 c.A854C p.K285T CACTCTTTACACA . 121.0 64.0 118.0 0.0 . 91 ZNF215 7762 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6977459 6977459 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF215 NM_013250 exon7 c.C1251A p.N417K CTTCAACCGACGT . 43.0 14.0 38.0 0.0 . 514 ZNF22 7570 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 45499035 45499035 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF22 NM_006963 exon2 c.C219A p.H73Q TCAACACCAGAAG . 43.0 12.0 47.0 0.0 . 154 ZNF383 163087 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 37734483 37734484 + Frame_Shift_Del DEL CC CC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CC CC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF383 NM_152604 exon5 c.1345_1346del p.449_449del GAAAAGCCCTATA . 66.0 20.0 79.0 0.0 . 92 ZNF397 84307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 18 32826113 32826113 + Nonsense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF397 NM_001135178 exon4 c.C1444T p.Q482X CCTTATCAGTGTA . 169.0 64.0 172.0 0.0 . 90 ZNF432 9668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 52538392 52538392 + Silent SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF432 NM_014650 exon5 c.T540A p.S180S ACTTACAGAGAAT . 100.0 30.0 81.0 0.0 . 154 ZNF560 147741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9578276 9578276 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF560 NM_152476 exon10 c.A1347G p.G449G CAAATGTCCAAAA . 131.0 56.0 146.0 0.0 . 158 ZNF594 84622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 5085970 5085970 + Missense_Mutation SNP G G T rs181984106 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF594 NM_032530 exon2 c.C1582A p.R528S CTGTGCGCCAAAT . 160.0 61.0 166.0 0.0 G|0.999;A|0.001 71 ZNF618 114991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 116770657 116770657 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF618 NM_133374 exon7 c.C578T p.A193V ACCGGGCAGGTAA . 112.0 34.0 123.0 0.0 . 22 ZNF638 27332 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 71577282 71577282 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF638 NM_014497 exon2 c.G1198A p.D400N CATGCTGATGCCC . 82.0 6.0 58.0 0.0 . 94 ZNF652 22834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 47390068 47390068 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF652 NM_001145365 exon3 c.A1040G p.H347R ACCATGTGTTTCC . 121.0 32.0 80.0 0.0 . 91 ZNF675 171392 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 23837293 23837293 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF675 NM_138330 exon4 c.A442C p.K148Q CATATTTATCACA . 119.0 6.0 97.0 0.0 . 228 ZW10 9183 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 113619110 113619110 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZW10 NM_004724 exon8 c.A958C p.K320Q ATGTTTTTTCATT . 196.0 67.0 167.0 0.0 . 228 RAD9A 5883 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 67163617 67163618 + Missense_Mutation DNP TC TC AG novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . . . . p.NL235KV CTTGAATCTTAGC . 142.0 51.0 145.0 0.0 . . RIN3 79890 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 93154522 93154523 + Missense_Mutation DNP GC GC TT novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . . . . p.P962S CTACCGGCCCCTG . 41.0 19.0 29.0 0.0 . .