Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18777712	18777712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ADAMTSL1	NM_001040272	exon19	c.G3485A	p.R1162H	CACACCGCAAGCC	.	96.0	13.0	68.0	0.0	.	230
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49176704	49176704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ADCY6	NM_020983	exon2	c.G514T	p.A172S	CGGGTGCGGCGTG	.	52.0	23.0	43.0	0.0	.	90
ADIPOR1	51094	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202914287	202914287	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ADIPOR1	NM_015999	exon5	c.G441T	p.L147L	GAGAAACAGCACG	.	125.0	47.0	129.0	2.0	.	90
ALOX12B	242	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7983975	7983975	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ALOX12B	NM_001139	exon6	c.650+1G>T	.	GACTCACATGGGC	.	61.0	41.0	83.0	1.0	.	226
ANGPT1	284	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	108334350	108334350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANGPT1	NM_001199859	exon4	c.A582T	p.L194F	ATGTTCTAATAAA	.	210.0	45.0	129.0	0.0	.	521
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241463777	241463777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANKMY1	NM_016552	exon7	c.G1090A	p.V364I	TTGGAACAACTGG	.	56.0	17.0	65.0	0.0	.	90
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	101520844	101520844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANO4	NM_178826	exon26	c.C2759A	p.P920Q	AGTGGCCGTGACC	.	73.0	26.0	87.0	0.0	.	96
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130219933	130219933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ARHGAP36	NM_144967	exon9	c.G1151T	p.G384V	TGTTTGGATCTGC	.	80.0	61.0	80.0	0.0	.	133
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160033981	160033981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ATP10B	NM_025153	exon19	c.C2951A	p.S984Y	GTGATGGATGGTG	.	300.0	166.0	187.0	1.0	.	72
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	360070	360070	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	AXIN1	NM_181050	exon5	c.1020-1G>T	.	CCATCCCTGTCCA	.	24.0	12.0	35.0	0.0	.	684
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34118587	34118587	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BMPER	NM_133468	exon13	c.G1197T	p.S399S	TGCCTCGCCCTTC	.	70.0	21.0	58.0	0.0	.	92
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93720038	93720038	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BTBD7	NM_001002860	exon7	c.C1707A	p.I569I	AACATAGATGCCA	.	90.0	33.0	72.0	0.0	.	91
C11orf57	55216	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111953465	111953465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	C11orf57	NM_001082969	exon6	c.A651C	p.K217N	CAAAAAACCTGCT	.	147.0	49.0	135.0	1.0	.	155
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13387893	13387893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CACNA1A	NM_001127221	exon23	c.T3875C	p.M1292T	ATCACCATCTCAA	.	55.0	17.0	48.0	0.0	.	67
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152695776	152695776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CACNB4	NM_000726	exon14	c.T1420A	p.L474M	AAGACAAGCGGTT	.	180.0	77.0	173.0	0.0	.	24
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26889956	26889956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CDH9	NM_016279	exon9	c.A1501G	p.K501E	CAGGTTTTGCATT	.	139.0	48.0	95.0	0.0	.	99
CHD3	1107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7811224	7811224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CHD3	NM_001005271	exon34	c.G5216T	p.G1739V	TAAAAGGTGACCG	.	24.0	15.0	74.0	0.0	.	228
CHRNA3	1136	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78893648	78893648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CHRNA3	NM_000743	exon5	c.C1336A	p.Q446K	CACTTTGGATGGC	.	239.0	90.0	214.0	1.0	.	515
CR2	1380	ucsc.edu;bcgsc.ca	37	1	207642179	207642179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CR2	NM_001006658	exon4	c.T669A	p.N223K	TCCCAATGGGAAG	.	251.0	94.0	237.0	2.0	.	232
CTSL1	1514	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90342998	90342998	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CTSL1	NM_145918	exon3	c.G183A	p.L61L	TGAACTGCACAAT	.	29.0	17.0	53.0	1.0	.	93
DAGLA	747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61502408	61502408	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DAGLA	NM_006133	exon10	c.C1062A	p.I354I	TGCCATCCGGCGC	.	37.0	11.0	57.0	0.0	.	92
DNMBP	23268	broad.mit.edu;bcgsc.ca	37	10	101656127	101656127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DNMBP	NM_015221	exon10	c.A2948G	p.D983G	AGGCTATCTTCAT	.	149.0	6.0	141.0	1.0	.	233
DTNA	1837	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	32418793	32418793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DTNA	NM_001390	exon12	c.C1257A	p.N419K	GAACAACCCCTCA	.	100.0	28.0	82.0	1.0	.	153
FANK1	92565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127697046	127697046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FANK1	NM_145235	exon8	c.G776T	p.R259M	ATCAGAGGGTGGC	.	109.0	41.0	89.0	0.0	.	91
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125072474	125072474	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FER1L6	NM_001039112	exon23	c.C2928G	p.T976T	CATCACCCAGATC	.	71.0	13.0	52.0	0.0	.	100
FIG4	9896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110059526	110059526	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FIG4	NM_014845	exon7	c.647-2A>G	.	TTTTTCAGGGGTA	.	90.0	54.0	121.0	0.0	.	69
FOXRED1	55572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	126145999	126145999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FOXRED1	NM_017547	exon8	c.A856G	p.I286V	TGCGCCATTGTGA	.	81.0	25.0	94.0	0.0	.	90
GLIS3-AS1	84850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	3898836	3898836	+	RNA	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	.	.	.	.	CCGCAACTAAGAG	.	92.0	24.0	77.0	0.0	.	.
GMNN	51053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24785914	24785914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GMNN	NM_001251991	exon7	c.G517C	p.E173Q	AATCAGGAATTTG	.	143.0	40.0	71.0	0.0	.	228
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45015970	45015970	+	Silent	SNP	T	T	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GOSR2	NM_004287	exon6	c.T483G	p.T161T	GGGGACTCAGAAG	.	68.0	22.0	69.0	0.0	.	92
GRIP2	80852	broad.mit.edu;ucsc.edu	37	3	14551403	14551403	+	RNA	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GRIP2	.	.	.	.	ATGGTGATGCCCA	.	39.0	4.0	24.0	0.0	.	69
GSTZ1	2954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77796672	77796672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GSTZ1	NM_145870	exon8	c.G494T	p.C165F	ATCTGTGCTTGGT	.	72.0	27.0	79.0	0.0	.	90
HNRNPA1	3178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54676893	54676893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HNRNPA1	NM_031157	exon8	c.C782G	p.S261C	GTTACTCTGGAGG	.	81.0	34.0	71.0	0.0	.	93
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31778524	31778524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HSPA1L	NM_005527	exon2	c.G1226A	p.G409E	ACGCCCCCAGCCG	.	149.0	38.0	104.0	0.0	.	230
IFITM5	387733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	299408	299408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	IFITM5	NM_001025295	exon1	c.C83T	p.A28V	TGCGGGGCCCCCA	.	61.0	29.0	35.0	0.0	.	514
IP6K3	117283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33690707	33690707	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	IP6K3	NM_001142883	exon7	c.C1023T	p.G341G	CGGGCTGCCTGGG	.	166.0	41.0	107.0	0.0	.	240
KCNH2	3757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150644109	150644109	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KCNH2	NM_000238	exon14	c.T3186A	p.T1062T	CAGGACAGTGGCC	.	166.0	46.0	98.0	0.0	.	94
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34810943	34810943	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KIAA0355	NM_014686	exon3	c.C627T	p.G209G	CAGCGGCAGTGGC	.	95.0	41.0	107.0	0.0	.	91
KIF14	9928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	200587131	200587131	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KIF14	NM_014875	exon2	c.721delC	p.Q241fs	TGCTCTGAGTAGG	.	137.0	56.0	157.0	0.0	.	140
KSR2	283455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	118298110	118298110	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KSR2	NM_173598	exon2	c.A220T	p.K74X	CCTCCTTGCGCAC	.	23.0	8.0	24.0	0.0	.	1449
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	27389536	27389536	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LGR4	NM_018490	exon18	c.G2734T	p.E912X	AATCTTCTTCATC	.	58.0	17.0	83.0	0.0	.	91
LGR6	59352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202249945	202249945	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LGR6	NM_001017403	exon6	c.C681A	p.T227T	GGGGACCCACAGC	.	73.0	26.0	44.0	0.0	.	160
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54373548	54373548	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LNX1	NM_001126328	exon4	c.G711C	p.G237G	TGCACTCCCGCTC	.	110.0	37.0	115.0	0.0	.	229
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141660519	141660519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LRP1B	NM_018557	exon23	c.G3736T	p.D1246Y	CTACATCCAGCTT	.	116.0	46.0	120.0	1.0	.	311
MAP2K1	5604	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66729181	66729181	+	Missense_Mutation	SNP	A	A	G	rs121908595		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAP2K1	NM_002755	exon3	c.A389G	p.Y130C	GCTTCTATGGTGC	.	52.0	16.0	76.0	1.0	.	978
MAP7D3	79649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135318411	135318411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAP7D3	NM_024597	exon7	c.A728G	p.K243R	CGTGGCTTCCTTT	.	41.0	4.0	34.0	0.0	.	110
MAPK1	5594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22160192	22160192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAPK1	NM_002745	exon3	c.C439T	p.H147Y	CACGGTGCAGAAC	.	135.0	46.0	156.0	0.0	.	1405
MB21D2	151963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	192516790	192516790	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MB21D2	NM_178496	exon2	c.G861A	p.W287X	CAGCCGCCATTCA	.	79.0	47.0	56.0	0.0	.	70
MPP1	4354	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154007594	154007594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MPP1	NM_002436	exon12	c.A1259G	p.E420G	ATGGCCTCAGAGT	.	44.0	34.0	44.0	1.0	.	132
MRPL1	65008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	78806454	78806454	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MRPL1	NM_020236	exon4	c.A447G	p.P149P	ATACCCATTTGCT	.	127.0	55.0	131.0	0.0	.	90
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057255	9057255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MUC16	NM_024690	exon3	c.C30191A	p.T10064K	GTGCTTGTGTCTG	.	90.0	45.0	110.0	0.0	.	566
NARG2	79664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	60740303	60740303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NARG2	NM_024611	exon11	c.G2161A	p.E721K	GGTATTCCGATGT	.	77.0	31.0	62.0	0.0	.	227
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70417752	70417752	+	Silent	SNP	G	G	A	rs145217972		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NETO1	NM_001201465	exon9	c.C1086T	p.I362I	CTGTACGATGACA	.	71.0	21.0	58.0	0.0	G|1.000;A|0.000	94
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50411919	50411919	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NUP62	NM_153719	exon3	c.G1146T	p.V382V	CAGCTTCACCTTC	.	58.0	22.0	54.0	0.0	.	615
ODF4	146852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	8243610	8243610	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ODF4	NM_153007	exon1	c.C241T	p.Q81X	ATGGCCCAGGTGT	.	41.0	28.0	67.0	0.0	.	69
OR10G8	219869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123900948	123900948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR10G8	NM_001004464	exon1	c.T619C	p.S207P	GTGGCCTCGGGCT	.	215.0	95.0	246.0	0.0	.	92
OR12D2	26529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29364910	29364910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR12D2	NM_013936	exon1	c.C434A	p.T145K	CCATCACAATCTG	.	227.0	63.0	160.0	0.0	.	69
OR2T11	127077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248790035	248790035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR2T11	NM_001001964	exon1	c.T395C	p.L132P	TTCATCAGGACTG	.	88.0	40.0	86.0	0.0	.	69
P2RX6	9127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	21380718	21380718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	NM_005446	exon12	c.C1138T	p.P380S	AAGGCCCCGAAAG	.	57.0	19.0	65.0	0.0	.	.
PEX14	5195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10678434	10678434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PEX14	NM_004565	exon5	c.T344C	p.I115T	CCATCATCATGGC	.	25.0	9.0	31.0	0.0	.	90
PHTF1	10745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	114255975	114255975	+	Nonsense_Mutation	SNP	G	G	A	rs61730007	byfrequency;alternate_allele	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PHTF1	NM_006608	exon7	c.C709T	p.Q237X	GACATTGTCTCCT	.	216.0	72.0	175.0	0.0	G|0.991;T|0.009	91
PI15	51050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75761417	75761417	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PI15	NM_015886	exon6	c.T706A	p.Y236N	CCAAGTTATGGGG	.	259.0	65.0	191.0	0.0	.	515
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14542851	14542851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	POTEC	NM_001137671	exon1	c.G295T	p.G99C	ACTTGCCCATCTT	.	268.0	91.0	247.0	0.0	.	3
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	113519285	113519285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PPP1R3A	NM_002711	exon4	c.G1862A	p.R621K	CCAGTTCTTGATG	.	309.0	163.0	273.0	0.0	.	832
PPP2R2B	5521	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	146077624	146077624	+	Silent	SNP	C	C	T	rs200884068		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PPP2R2B	NM_181675	exon4	c.G570A	p.K190K	TAAACTCTTCAGG	.	264.0	78.0	169.0	1.0	C|0.999;T|0.001	659
PRKCSH	5589	ucsc.edu;bcgsc.ca	37	19	11548763	11548763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PRKCSH	NM_001001329	exon4	c.C263T	p.P88L	ATATCCCCTCCAA	.	134.0	47.0	147.0	2.0	.	90
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1580416	1580416	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PRPF8	NM_006445	exon15	c.T2035A	p.S679T	AATGTGACTCCAC	.	59.0	21.0	53.0	0.0	.	525
RFTN2	130132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198436936	198436936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RFTN2	NM_144629	exon9	c.C1302A	p.D434E	GGTTGTGTCTAAT	.	170.0	62.0	162.0	0.0	.	90
RFX5	5993	broad.mit.edu;bcgsc.ca	37	1	151316341	151316341	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RFX5	NM_000449	exon9	c.A573G	p.E191E	GGTTACTTCTGGG	.	80.0	4.0	107.0	0.0	.	91
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109695878	109695878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RGAG1	NM_020769	exon3	c.C2033T	p.A678V	CTGGAGCAATGTC	.	48.0	38.0	79.0	0.0	.	132
ROBO4	54538	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	124766856	124766856	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ROBO4	NM_019055	exon2	c.C372A	p.V124V	TCTGCTGACTGCC	.	54.0	17.0	62.0	0.0	.	92
RPL10L	140801	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	47120791	47120791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RPL10L	NM_080746	exon1	c.G149A	p.G50D	ATGTGGCCACCGA	.	91.0	35.0	92.0	1.0	.	91
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	18462375	18462375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SATB1	NM_002971	exon2	c.A85C	p.K29Q	CAATCTTGGCTGG	.	164.0	95.0	134.0	0.0	.	228
SERPINA12	145264	broad.mit.edu;bcgsc.ca	37	14	94964608	94964608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SERPINA12	NM_173850	exon3	c.A127G	p.M43V	CTGCCATCCTTTG	.	119.0	5.0	94.0	0.0	.	310
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51169520	51169526	+	Frame_Shift_Del	DEL	CCCACTG	CCCACTG	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	CCCACTG	CCCACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SHANK1	NM_016148	exon22	c.5691_5697del	p.1897_1899del	GCCTCCCCCACTG	.	42.0	19.0	33.0	0.0	.	153
SIRT2	22933	broad.mit.edu;bcgsc.ca	37	19	39380761	39380761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SIRT2	NM_012237	exon5	c.G250A	p.G84R	CAGCTCCCACCAA	.	74.0	4.0	68.0	1.0	.	226
SKP1	6500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133494206	133494206	+	Silent	SNP	A	A	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SKP1	NM_170679	exon5	c.T396G	p.P132P	CTCCTCAGGAGTT	.	126.0	44.0	106.0	0.0	.	226
SLFN14	342618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33884944	33884944	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SLFN14	NM_001129820	exon1	c.C138A	p.I46I	AGCCCGGATAATT	.	152.0	61.0	137.0	0.0	.	1
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54853192	54853192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SPTBN1	NM_003128	exon12	c.G1465A	p.E489K	GAGCTCGAGGCCG	.	108.0	42.0	134.0	0.0	.	140
SYNE3	161176	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95942020	95942020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	NM_152592	exon1	c.A139G	p.T47A	CCTCGGTCTCCCA	.	26.0	4.0	35.0	0.0	.	.
TCF4	6925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	52901914	52901914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TCF4	NM_001243226	exon17	c.G1657A	p.V553M	TCCCCACCTGAAA	.	27.0	16.0	45.0	0.0	.	523
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138856001	138856001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMEM173	NM_198282	exon8	c.G985T	p.V329F	GGAGAACCTCCTG	.	67.0	13.0	33.0	0.0	.	69
TMEM88	92162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7758491	7758491	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMEM88	NM_203411	exon1	c.C99T	p.A33A	AACAGCCCAGAAT	.	25.0	18.0	46.0	0.0	.	68
TMPRSS11B	132724	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	69095161	69095161	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMPRSS11B	NM_182502	exon8	c.C760T	p.Q254X	TGTTTTGGACTTT	.	204.0	64.0	197.0	1.0	.	91
TOM1L1	10040	broad.mit.edu;bcgsc.ca	37	17	53027430	53027430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TOM1L1	NM_005486	exon14	c.C1313T	p.P438L	TCCAGCCACCTAA	.	84.0	5.0	79.0	0.0	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A	rs121913344		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	TP53,brain,glioma,+2	TP53	NM_000546	exon8	c.C916T	p.R306X	TACCTCGCTTAGT	.	39.0	21.0	64.0	1.0	.	70225
TRPS1	7227	hgsc.bcm.edu;bcgsc.ca	37	8	116617020	116617020	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TRPS1	NM_014112	exon4	c.1176delT	p.S392fs	CTTGTTAGAGTTT	.	216.0	56.0	172.0	2.0	.	229
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	135786464	135786464	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TSC1	NM_000368	exon11	c.1066delA	p.T356fs	GAGTGGTCATACC	.	50.0	28.0	87.0	0.0	.	1906
TYW1	55253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	66463919	66463919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TYW1	NM_018264	exon3	c.G251T	p.G84V	TTTATGGTTCTCA	.	131.0	35.0	89.0	0.0	.	91
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73840324	73840324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	UNC13D	NM_199242	exon1	c.C95T	p.P32L	GGCGGGGGATCCT	.	21.0	10.0	27.0	0.0	.	92
USP9Y	8287	broad.mit.edu;bcgsc.ca	37	Y	14968376	14968376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	USP9Y	NM_004654	exon43	c.G7176A	p.M2392I	ATGTATGGTAGCT	.	94.0	76.0	119.0	1.0	.	136
USP9Y	8287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	14968377	14968377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	USP9Y	NM_004654	exon43	c.G7177T	p.V2393L	TGTATGGTAGCTC	.	92.0	75.0	118.0	0.0	.	136
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82836955	82836955	+	Silent	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	VCAN	NM_004385	exon8	c.T8133A	p.A2711A	AAAAGCTGAAGCA	.	94.0	27.0	88.0	0.0	.	238
WNT2	7472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	116955172	116955172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	WNT2	NM_003391	exon3	c.G541A	p.D181N	TGGCATCCTTTCC	.	354.0	94.0	195.0	0.0	.	1011
ZNF410	57862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74363143	74363143	+	Silent	SNP	G	G	A	rs150263864		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZNF410	NM_001242924	exon5	c.G345A	p.P115P	ATCCCCGGAGTTT	.	122.0	33.0	100.0	0.0	G|1.000;A|0.000	91
ZNF618	114991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116731402	116731402	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZNF618	NM_133374	exon2	c.C39T	p.D13D	GGCTGACGGAGCC	.	20.0	16.0	30.0	0.0	.	22
ZPLD1	131368	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	102157387	102157387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZPLD1	NM_175056	exon2	c.C104T	p.A35V	GGTCTGCTCAGTT	.	183.0	59.0	123.0	1.0	.	72