Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AARS	16	hgsc.bcm.edu;bcgsc.ca	37	16	70292100	70292100	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AARS	NM_001605	exon15	c.C2013T	p.C671C	CAGGGGGCAATCC	.	70.0	4.0	117.0	0.0	.	91
ABCB1	5243	hgsc.bcm.edu;bcgsc.ca	37	7	87214929	87214929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABCB1	NM_000927	exon5	c.G185T	p.G62V	CCAGCCCCATGGA	.	116.0	6.0	106.0	0.0	.	582
ACHE	43	hgsc.bcm.edu;bcgsc.ca	37	7	100487872	100487872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACHE	NM_000665	exon5	c.A1808G	p.D603G	TAGTGGTCGAACT	.	141.0	6.0	207.0	0.0	.	92
ACOX1	51	hgsc.bcm.edu;bcgsc.ca	37	17	73944528	73944528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACOX1	NM_007292	exon13	c.T1739C	p.M580T	TCTGTCATGATGC	.	69.0	4.0	53.0	0.0	.	91
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43847742	43847742	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ADAMTS20,brain,glioma,-1	ADAMTS20	NM_025003	exon12	c.C1728T	p.I576I	ACTTTCGATTCCG	.	76.0	46.0	105.0	0.0	.	795
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43847776	43847776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTS20	NM_025003	exon12	c.A1694G	p.Y565C	GAACTGTAAGGTT	.	87.0	47.0	114.0	0.0	.	795
ADAMTSL3	57188	hgsc.bcm.edu;bcgsc.ca	37	15	84694002	84694002	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTSL3	NM_207517	exon27	c.T4470C	p.S1490S	CACAAGTGTGTGG	.	54.0	5.0	106.0	0.0	.	1153
ADAT2	134637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143755117	143755117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAT2	NM_182503	exon3	c.C203T	p.A68V	CGAGTAGCCTGAA	.	25.0	17.0	37.0	0.0	.	90
ADCY8	114	hgsc.bcm.edu;bcgsc.ca	37	8	131795974	131795974	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADCY8	NM_001115	exon17	c.C3231A	p.I1077I	CTTGTTGATCTCC	.	110.0	6.0	115.0	0.0	.	157
ADCYAP1R1	117	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	31125006	31125006	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADCYAP1R1	NM_001118	exon9	c.A618G	p.K206K	CATCAAAGACTGG	.	39.0	4.0	39.0	0.0	.	91
AGBL1	123624	hgsc.bcm.edu;bcgsc.ca	37	15	87097688	87097688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_152336	exon20	c.G2776T	p.V926L	CGGGTGGTGGTGT	.	103.0	5.0	133.0	0.0	.	.
AHNAK	79026	hgsc.bcm.edu;bcgsc.ca	37	11	62300901	62300901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AHNAK	NM_001620	exon5	c.A988G	p.R330G	AAACCCTCAGCCC	.	76.0	4.0	106.0	0.0	.	109
AIM1	202	hgsc.bcm.edu;bcgsc.ca	37	6	106999726	106999726	+	Splice_Site	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AIM1	NM_001624	exon12	c.4089-1G>T	.	TTCTTAGATGGGT	.	98.0	4.0	161.0	0.0	.	139
AKT2	208	hgsc.bcm.edu;bcgsc.ca	37	19	40761108	40761108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AKT2	NM_001626	exon4	c.A244G	p.T82A	TGACTGTGGTCCA	.	121.0	6.0	138.0	0.0	.	978
ALB	213	hgsc.bcm.edu;bcgsc.ca	37	4	74275126	74275126	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.T537C	p.L179L	ACTCCTTTTCTTT	.	294.0	173.0	388.0	0.0	.	96
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74275125	74275126	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.536_537insC	p.L179fs	AACTCCTTTTCTT	.	297.0	155.0	388.0	0.0	.	96
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74275205	74275205	+	Splice_Site	SNP	G	G	A	rs75828235	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.615+1G>A	.	CCAAAGGTATTAT	.	144.0	41.0	198.0	0.0	.	96
AMBRA1	55626	hgsc.bcm.edu;bcgsc.ca	37	11	46569854	46569854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMBRA1	NM_001267783	exon2	c.A77G	p.Q26R	AGCCGCTGAGCTC	.	97.0	5.0	160.0	0.0	.	136
AMMECR1L	83607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128628438	128628438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMMECR1L	NM_031445	exon5	c.G583A	p.V195I	GGGAGACAGAGCA	.	125.0	70.0	157.0	0.0	.	90
AMOTL1	154810	hgsc.bcm.edu;bcgsc.ca	37	11	94602390	94602390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMOTL1	NM_130847	exon12	c.A2516G	p.E839G	ACCATGAGCATGC	.	93.0	5.0	108.0	0.0	.	91
ANKRD44	91526	hgsc.bcm.edu;bcgsc.ca	37	2	197954757	197954757	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ANKRD44	NM_001195144	exon12	c.1101-1G>T	.	CCACACCTGAGGA	.	105.0	5.0	95.0	0.0	.	230
APBA3	9546	hgsc.bcm.edu;bcgsc.ca	37	19	3754233	3754233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	APBA3	NM_004886	exon4	c.C722T	p.T241M	ATGCGCGTGCTGG	.	69.0	4.0	76.0	0.0	.	90
ARHGAP25	9938	hgsc.bcm.edu;bcgsc.ca	37	2	69043419	69043419	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP25	NM_001166277	exon6	c.688-2A>G	.	CTTCCCAGGCTCA	.	78.0	4.0	88.0	0.0	.	274
ARHGEF2	9181	hgsc.bcm.edu;bcgsc.ca	37	1	155927648	155927648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGEF2	NM_001162383	exon13	c.A1571G	p.Q524R	AGATTCTGCAGCG	.	101.0	5.0	131.0	0.0	.	228
ARTN	9048	hgsc.bcm.edu;bcgsc.ca	37	1	44401362	44401362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARTN	NM_001136215	exon2	c.T34C	p.S12P	ACGCTGTCCCACT	.	103.0	5.0	192.0	0.0	.	90
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131130888	131130888	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASAP1	NM_018482	exon19	c.T1641C	p.Y547Y	ATCTACATACTTT	.	263.0	72.0	177.0	0.0	.	95
ASB16	92591	hgsc.bcm.edu;bcgsc.ca	37	17	42255627	42255627	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASB16	NM_080863	exon5	c.C1231T	p.L411L	AGGCAGCTGCAGC	.	54.0	4.0	77.0	0.0	.	227
ATG2A	23130	hgsc.bcm.edu;bcgsc.ca	37	11	64681337	64681337	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATG2A	NM_015104	exon4	c.G546A	p.P182P	ATCACCCGGAGAG	.	79.0	4.0	143.0	0.0	.	69
ATP8B4	79895	hgsc.bcm.edu;bcgsc.ca	37	15	50190396	50190396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP8B4	NM_024837	exon22	c.T2342C	p.M781T	TTACACATGCAAG	.	150.0	6.0	129.0	0.0	.	140
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	364562	364563	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AXIN1	NM_181050	exon3	c.999_1000del	p.333_334del	TGAGGGACAGGGT	.	53.0	23.0	135.0	0.0	.	684
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	396448	396448	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AXIN1	NM_181050	exon2	c.T578A	p.M193K	TCCTCCATAGTGG	.	114.0	20.0	192.0	0.0	.	684
BAZ2A	11176	hgsc.bcm.edu;bcgsc.ca	37	12	56993526	56993526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BAZ2A	NM_013449	exon26	c.T5138C	p.V1713A	TCTGGGACAGCCT	.	55.0	4.0	105.0	0.0	.	22
BCOR	54880	hgsc.bcm.edu;bcgsc.ca	37	X	39913172	39913172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BCOR	NM_001123385	exon14	c.C4943A	p.P1648Q	TAACACGGTAAGA	.	86.0	4.0	135.0	0.0	.	229
BRAP	8315	hgsc.bcm.edu;bcgsc.ca	37	12	112098444	112098444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BRAP	NM_006768	exon7	c.C932T	p.P311L	TCTACTGGCTCGG	.	121.0	5.0	172.0	0.0	.	710
C12orf4	57102	hgsc.bcm.edu;bcgsc.ca	37	12	4600397	4600397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C12orf4	NM_020374	exon12	c.A1444G	p.M482V	TAGTCATTTCCTA	.	100.0	6.0	119.0	0.0	.	226
C16orf96	342346	hgsc.bcm.edu;bcgsc.ca	37	16	4626475	4626475	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001145011	exon5	c.A1994G	p.Q665R	TGTCCCAGGCCAT	.	93.0	5.0	143.0	0.0	.	.
C17orf78	284099	hgsc.bcm.edu;bcgsc.ca	37	17	35736083	35736083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_173625	exon3	c.A154G	p.T52A	ACTCACACAGAAA	.	85.0	4.0	99.0	0.0	.	.
C6	729	hgsc.bcm.edu;bcgsc.ca	37	5	41186295	41186295	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6	NM_001115131	exon6	c.A603G	p.A201A	CTCTCCTGCCAGA	.	97.0	4.0	174.0	0.0	.	95
C6orf58	352999	hgsc.bcm.edu;bcgsc.ca	37	6	127902353	127902353	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6orf58	NM_001010905	exon4	c.T600C	p.F200F	TAAGTTTGATGAT	.	89.0	4.0	128.0	0.0	.	90
C8orf58	541565	hgsc.bcm.edu;bcgsc.ca	37	8	22458617	22458617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C8orf58	NM_001013842	exon2	c.A263G	p.Q88R	TTTCTCAGGACTC	.	36.0	4.0	93.0	0.0	.	91
CALB1	793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	91072909	91072909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CALB1	NM_004929	exon10	c.A620C	p.D207A	TTTTCATCTATGT	.	137.0	40.0	105.0	0.0	.	91
CCDC25	55246	hgsc.bcm.edu;bcgsc.ca	37	8	27605739	27605739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCDC25	NM_018246	exon7	c.A406G	p.T136A	CTTTGGTCTTTTC	.	110.0	5.0	249.0	0.0	.	90
CCDC88C	440193	broad.mit.edu;bcgsc.ca	37	14	91739338	91739338	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCDC88C	NM_001080414	exon30	c.C5718A	p.P1906P	AATGGCGGGGGCT	.	31.0	4.0	80.0	1.0	.	25
CD6	923	hgsc.bcm.edu;bcgsc.ca	37	11	60785418	60785418	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD6	NM_006725	exon11	c.A1770G	p.S590S	TTCTTCAGAGAGG	.	58.0	4.0	81.0	0.0	.	227
CDCP2	200008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	54618517	54618517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDCP2	NM_201546	exon1	c.G79A	p.G27S	GCCTACCTTCCAT	.	125.0	26.0	216.0	0.0	.	69
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	57754012	57754012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CGNL1	NM_001252335	exon9	c.T2325G	p.D775E	CCATGATCAGGAG	.	89.0	21.0	136.0	0.0	.	100
CHD2	1106	hgsc.bcm.edu;bcgsc.ca	37	15	93522390	93522390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHD2	NM_001271	exon22	c.A2753G	p.K918R	TTACAAAGGGGAC	.	71.0	4.0	90.0	0.0	.	229
CHDC2	286464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	36156116	36156116	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_173695	exon9	c.G1087C	p.D363H	GACAAAGACCTTT	.	176.0	10.0	244.0	0.0	.	.
CHIT1	1118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203186123	203186123	+	Missense_Mutation	SNP	C	C	T	rs202003206		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHIT1	NM_003465	exon11	c.G1295A	p.R432Q	CGTTCCCGAGGAT	.	28.0	9.0	42.0	0.0	C|0.999;T|0.000	90
CLASP2	23122	hgsc.bcm.edu;bcgsc.ca	37	3	33759302	33759302	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLASP2	NM_015097	exon1	c.C193A	p.R65R	TTACCCGGTAGTT	.	86.0	5.0	113.0	0.0	.	93
CMTM4	146223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66651253	66651253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CMTM4	NM_178818	exon5	c.A632T	p.Y211F	GTGGAGTAGGAAA	.	287.0	98.0	405.0	1.0	.	227
COG6	57511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	40293426	40293426	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COG6	NM_001145079	exon14	c.C1338T	p.L446L	GACACTCATGTTG	.	151.0	25.0	230.0	1.0	.	227
COL5A1	1289	hgsc.bcm.edu;bcgsc.ca	37	9	137716488	137716488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL5A1	NM_000093	exon62	c.T4741C	p.S1581P	CAGGCATCCAGGA	.	96.0	6.0	168.0	0.0	.	524
COL7A1	1294	hgsc.bcm.edu;bcgsc.ca	37	3	48609831	48609831	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL7A1	NM_000094	exon89	c.A6960G	p.G2320G	CAGGTCTCCAGCA	.	153.0	7.0	184.0	0.0	.	160
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2823315	2823315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CSMD1	NM_033225	exon59	c.A9262G	p.S3088G	GTTTGCTCGGATT	.	75.0	4.0	145.0	0.0	.	86
CTC1	80169	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	8133211	8133211	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CTC1	NM_025099	exon18	c.C3009A	p.I1003I	TGACCTGATGGTG	.	43.0	4.0	97.0	0.0	.	93
CUL1	8454	hgsc.bcm.edu;bcgsc.ca	37	7	148451110	148451110	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CUL1	NM_003592	exon3	c.A183G	p.Q61Q	AAACCAAGCACGA	.	93.0	5.0	100.0	0.0	.	226
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101840082	101840082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CUX1	NM_001202543	exon15	c.C1424A	p.S475Y	GCTCATCCCTGGC	.	138.0	44.0	174.0	0.0	.	160
DCTN1	1639	hgsc.bcm.edu;bcgsc.ca	37	2	74590545	74590545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCTN1	NM_004082	exon28	c.C3221T	p.P1074L	TGCCCAGGGATGG	.	50.0	4.0	64.0	0.0	.	95
DHRS4L1	728635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	24507078	24507078	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001082488	exon2	c.C255T	p.G85G	GACGGGCACTGTG	.	306.0	129.0	415.0	0.0	.	.
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38080908	38080908	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DLEC1	NM_007337	exon1	c.C192T	p.R64R	GCCCCGCCGCCTC	.	138.0	46.0	176.0	0.0	.	161
DMD	1756	hgsc.bcm.edu;bcgsc.ca	37	X	32328324	32328324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DMD	NM_004006	exon42	c.T5992C	p.S1998P	AAGTAGAAGGCAC	.	140.0	6.0	223.0	0.0	.	265
DNAJC6	9829	hgsc.bcm.edu;bcgsc.ca	37	1	65867511	65867511	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNAJC6	NM_001256864	exon15	c.C2175A	p.T725T	TCCCACCCATCAA	.	73.0	4.0	110.0	0.0	.	272
DOCK9	23348	hgsc.bcm.edu;bcgsc.ca	37	13	99519792	99519792	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DOCK9	NM_015296	exon31	c.3178-2A>G	.	AGGGTCTGCAGGA	.	38.0	4.0	45.0	0.0	.	90
DPF2	5977	hgsc.bcm.edu;bcgsc.ca	37	11	65113180	65113180	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DPF2	NM_006268	exon7	c.C681G	p.H227Q	TTACCACTATGCC	.	57.0	4.0	79.0	0.0	.	91
DSEL	92126	hgsc.bcm.edu;bcgsc.ca	37	18	65178261	65178261	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DSEL	NM_032160	exon2	c.A3615G	p.E1205E	GATGTTTTCAATT	.	120.0	6.0	242.0	0.0	.	157
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103058312	103058312	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DYNC2H1	NM_001377	exon43	c.A7137G	p.Q2379Q	CCTACAACAGGTA	.	88.0	4.0	106.0	0.0	.	68
EDARADD	128178	hgsc.bcm.edu;bcgsc.ca	37	1	236645629	236645629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EDARADD	NM_145861	exon6	c.C328T	p.P110S	CGGGCCCCCACCA	.	73.0	4.0	143.0	0.0	.	90
EFNA5	1946	hgsc.bcm.edu;bcgsc.ca	37	5	106723416	106723416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EFNA5	NM_001962	exon3	c.A475G	p.R159G	TTGGTCTCACAAA	.	66.0	4.0	168.0	0.0	.	90
ELOVL3	83401	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103988767	103988767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ELOVL3	NM_152310	exon4	c.A571T	p.N191Y	GCTGCCAACGTGA	.	122.0	5.0	149.0	0.0	.	92
EPHA3	2042	hgsc.bcm.edu;bcgsc.ca	37	3	89390186	89390186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHA3	NM_005233	exon4	c.G935T	p.R312L	ACTTCCGGGCAGA	.	94.0	4.0	74.0	0.0	.	1500
EPHX4	253152	hgsc.bcm.edu;bcgsc.ca	37	1	92528734	92528734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHX4	NM_173567	exon7	c.G980T	p.R327M	ATTTCAGGCTAAC	.	80.0	4.0	93.0	0.0	.	90
EPS8L3	79574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110294654	110294654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPS8L3	NM_139053	exon15	c.C1400T	p.P467L	TCCCGTGGGTTCC	.	186.0	75.0	236.0	0.0	.	93
EPX	8288	hgsc.bcm.edu;bcgsc.ca	37	17	56280606	56280606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPX	NM_000502	exon11	c.C1873T	p.P625S	CTTTTGCCGGGGG	.	84.0	5.0	120.0	0.0	.	92
ERBB3	2065	hgsc.bcm.edu;bcgsc.ca	37	12	56493513	56493513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ERBB3	NM_001982	exon24	c.G2921T	p.R974L	CACCACGGTATCT	.	91.0	4.0	164.0	0.0	.	1403
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23707249	23707249	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ERN2	NM_033266	exon14	c.C1720T	p.L574L	GGCCCAGCACGTC	.	75.0	22.0	96.0	0.0	.	322
ESR1	2099	hgsc.bcm.edu;bcgsc.ca	37	6	152382169	152382169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ESR1	NM_000125	exon6	c.A1279G	p.M427V	TTCGACATGCTGC	.	74.0	4.0	147.0	0.0	.	1042
F5	2153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169512354	169512354	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	F5	NM_000130	exon14	c.1976-2A>G	.	AGTTCCTACAGAA	.	73.0	23.0	103.0	0.0	.	157
FASTK	10922	hgsc.bcm.edu;bcgsc.ca	37	7	150774997	150774997	+	Silent	SNP	A	A	G	rs189454687		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FASTK	NM_006712	exon5	c.T1008C	p.V336V	GGAAAAAACAAAG	.	116.0	5.0	223.0	0.0	A|0.999;G|0.000	359
FBXO45	200933	hgsc.bcm.edu;bcgsc.ca	37	3	196304623	196304623	+	Silent	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBXO45	NM_001105573	exon2	c.A618T	p.L206L	TCTACTACATAAT	.	49.0	4.0	94.0	0.0	.	614
FEM1A	55527	hgsc.bcm.edu;bcgsc.ca	37	19	4792908	4792908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FEM1A	NM_018708	exon1	c.T1042C	p.Y348H	CTGGCCTATGACT	.	72.0	5.0	81.0	0.0	.	90
FGGY	55277	hgsc.bcm.edu;bcgsc.ca	37	1	60019838	60019838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FGGY	NM_001113411	exon8	c.A842G	p.E281G	TCTGTGAGGGGCA	.	93.0	5.0	153.0	0.0	.	69
FGL2	10875	hgsc.bcm.edu;bcgsc.ca	37	7	76829024	76829024	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	FGL2,nipple,malignant_melanoma,-2	FGL2	NM_006682	exon1	c.A87G	p.E29E	TTTAATTTCCTCT	.	78.0	4.0	79.0	0.0	.	92
FMN2	56776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240370660	240370660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FMN2	NM_020066	exon5	c.A2548G	p.K850E	GCCTTTAAAAACA	.	116.0	54.0	147.0	0.0	.	145
FOXO1	2308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41239792	41239792	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FOXO1	NM_002015	exon1	c.C558T	p.I186I	CTCGTAGATCTGC	.	182.0	65.0	333.0	1.0	.	1295
FOXP1	27086	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	71096149	71096149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FOXP1	NM_001244815	exon5	c.G614A	p.G205D	AGAAGGCCTTGGC	.	158.0	19.0	235.0	2.0	.	415
FZD3	7976	hgsc.bcm.edu;bcgsc.ca	37	8	28385289	28385289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FZD3	NM_017412	exon5	c.A1012G	p.I338V	TGGGGCATCCCCG	.	59.0	4.0	133.0	0.0	.	659
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55223877	55223877	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GFRAL	NM_207410	exon6	c.A893C	p.Q298P	TTACACAAAGTGA	.	120.0	63.0	134.0	0.0	.	154
GGTLC1	92086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	23967085	23967085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GGTLC1	NM_178311	exon2	c.C164T	p.T55I	TTGATGGTGCTGG	.	54.0	22.0	53.0	0.0	.	23
GK5	256356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141884509	141884509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GK5	NM_001039547	exon16	c.G1545T	p.W515C	TTTGGCCCAGTTT	.	514.0	246.0	651.0	1.0	.	90
GLTSCR1L	23506	hgsc.bcm.edu;bcgsc.ca	37	6	42819934	42819934	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_015349	exon6	c.A1944G	p.P648P	ACTGCCAGGTCAG	.	123.0	5.0	115.0	0.0	.	.
GNAL	2774	hgsc.bcm.edu;bcgsc.ca	37	18	11881066	11881066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNAL	NM_182978	exon12	c.C1309A	p.R437S	AACATCCGCAGGG	.	62.0	5.0	114.0	0.0	.	228
GNL2	29889	hgsc.bcm.edu;bcgsc.ca	37	1	38048471	38048471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNL2	NM_013285	exon7	c.C703A	p.P235T	TGTGAGGGGAACG	.	85.0	5.0	122.0	0.0	.	91
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45006918	45006918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GOSR2	NM_001012511	exon2	c.G62A	p.R21H	TGGGACGCCTGGA	.	49.0	23.0	70.0	0.0	.	92
GPATCH3	63906	hgsc.bcm.edu;bcgsc.ca	37	1	27226824	27226824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPATCH3	NM_022078	exon1	c.G110T	p.R37L	TCTTCTCGGAACT	.	46.0	4.0	129.0	0.0	.	90
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	89971070	89971070	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPR98	NM_032119	exon24	c.G5121A	p.Q1707Q	GCTGCAGTTCTCC	.	53.0	41.0	84.0	0.0	.	103
GSDMB	55876	hgsc.bcm.edu;bcgsc.ca	37	17	38068744	38068746	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GSDMB	NM_001042471	exon3	c.240_242del	p.80_81del	TCAGCCTTTTGAC	.	218.0	104.0	219.0	0.0	.	153
GTF3C1	2975	hgsc.bcm.edu;bcgsc.ca	37	16	27499733	27499733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GTF3C1	NM_001520	exon23	c.A3515G	p.N1172S	CTGCTGTTGCCTA	.	60.0	4.0	105.0	0.0	.	94
HACE1	57531	hgsc.bcm.edu;bcgsc.ca	37	6	105259252	105259252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HACE1	NM_020771	exon7	c.T551C	p.L184P	CTGTCTAGCAAGC	.	67.0	4.0	117.0	0.0	.	663
HDLBP	3069	hgsc.bcm.edu;bcgsc.ca	37	2	242186199	242186199	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HDLBP	NM_005336	exon16	c.C1918A	p.R640R	TGCTCCGGGCAGC	.	122.0	5.0	121.0	0.0	.	290
HEATR5A	25938	hgsc.bcm.edu;bcgsc.ca	37	14	31819853	31819853	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HEATR5A	NM_015473	exon17	c.T2482C	p.L828L	CATGTAACTGAAC	.	61.0	4.0	69.0	0.0	.	23
HERC1	8925	hgsc.bcm.edu;bcgsc.ca	37	15	63915040	63915040	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HERC1	NM_003922	exon74	c.C13662A	p.T4554T	TTCTGCGGTGGCA	.	71.0	4.0	77.0	0.0	.	666
HIBADH	11112	hgsc.bcm.edu;bcgsc.ca	37	7	27672052	27672052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HIBADH	NM_152740	exon3	c.C265A	p.P89T	CTGCTGGGGAAGA	.	76.0	4.0	86.0	0.0	.	92
HIP1	3092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	75186064	75186064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HIP1	NM_005338	exon17	c.A1633G	p.S545G	GTTGGCTTGTGGC	.	43.0	4.0	70.0	0.0	.	1085
HMGCR	3156	hgsc.bcm.edu;bcgsc.ca	37	5	74638583	74638583	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HMGCR	NM_001130996	exon2	c.A153G	p.P51P	ATGTCCAAAGTTT	.	91.0	5.0	159.0	0.0	.	227
HOMER1	9456	hgsc.bcm.edu;bcgsc.ca	37	5	78692728	78692728	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HOMER1	NM_001277077	exon6	c.406-2A>G	.	ATTTCCTAGAAAA	.	123.0	5.0	240.0	0.0	.	90
HOMEZ	57594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23745570	23745570	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HOMEZ	NM_020834	exon2	c.T867C	p.S289S	AGAAGAAGAGGTA	.	132.0	18.0	138.0	0.0	.	22
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	152191383	152191383	+	Nonsense_Mutation	SNP	G	G	A	rs148651006	byfrequency	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HRNR	NM_001009931	exon3	c.C2722T	p.R908X	CATGTCGGCCATA	.	126.0	48.0	166.0	0.0	A|0.000;G|0.999;T|0.000	93
HUWE1	10075	hgsc.bcm.edu;bcgsc.ca	37	X	53579842	53579842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HUWE1	NM_031407	exon62	c.C8507A	p.P2836Q	CTCTCTGGGGAAA	.	83.0	4.0	115.0	0.0	.	280
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201186487	201186487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IGFN1	NM_001164586	exon17	c.C9668T	p.A3223V	GGACAGCACCTCG	.	182.0	23.0	235.0	0.0	.	71
INADL	10207	hgsc.bcm.edu;bcgsc.ca	37	1	62582321	62582321	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INADL	NM_176877	exon36	c.C4773A	p.A1591A	AAATGCCTCACAG	.	51.0	4.0	95.0	0.0	.	94
INSC	387755	hgsc.bcm.edu;bcgsc.ca	37	11	15247245	15247245	+	Silent	SNP	G	G	T	rs111784838	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INSC	NM_001031853	exon9	c.G1182T	p.A394A	CTCTGCGGCCCTT	.	66.0	4.0	96.0	0.0	G|0.999;A|0.001	94
INSC	387755	hgsc.bcm.edu;bcgsc.ca	37	11	15262003	15262003	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INSC	NM_001031853	exon12	c.T1545C	p.R515R	GTCCCGTCTCATC	.	111.0	5.0	165.0	0.0	.	94
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212139822	212139822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INTS7	NM_015434	exon16	c.A2133T	p.L711F	TATCAGTAAACAG	.	90.0	39.0	111.0	0.0	.	90
IRGC	56269	hgsc.bcm.edu;bcgsc.ca	37	19	44223753	44223753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IRGC	NM_019612	exon2	c.C1043T	p.S348F	TCTATTCCCAGTC	.	63.0	4.0	93.0	0.0	.	70
ISCA2	122961	hgsc.bcm.edu;bcgsc.ca	37	14	74960541	74960541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ISCA2	NM_001272007	exon1	c.A64G	p.R22G	TGGCCGAGGGGCA	.	79.0	5.0	94.0	0.0	.	90
ISLR	3671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74468160	74468160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ISLR	NM_201526	exon2	c.G961A	p.E321K	AAGCTGGAGGAAG	.	36.0	16.0	67.0	0.0	.	155
ITGAL	3683	hgsc.bcm.edu;bcgsc.ca	37	16	30500452	30500452	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGAL	NM_002209	exon10	c.C1056T	p.S352S	CTCCAGCGGCATC	.	100.0	4.0	124.0	0.0	.	994
ITGAX	3687	hgsc.bcm.edu;bcgsc.ca	37	16	31373480	31373480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGAX	NM_000887	exon11	c.A1171T	p.I391F	ACCTTCATCAACA	.	86.0	4.0	170.0	0.0	.	229
ITGB7	3695	hgsc.bcm.edu;bcgsc.ca	37	12	53586193	53586193	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGB7	NM_000889	exon14	c.C2076T	p.T692T	GTCCAGGGTCCGC	.	35.0	5.0	55.0	0.0	.	231
JMJD6	23210	hgsc.bcm.edu;bcgsc.ca	37	17	74716510	74716510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JMJD6	NM_001081461	exon5	c.A1012G	p.I338V	AAGCTATCCCTGT	.	77.0	4.0	86.0	0.0	.	93
JMY	133746	hgsc.bcm.edu;bcgsc.ca	37	5	78587025	78587025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JMY	NM_152405	exon4	c.T1430C	p.M477T	AACGGATGGAAAA	.	77.0	4.0	119.0	0.0	.	227
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	124385357	124385357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KALRN	NM_001024660	exon46	c.A6404G	p.D2135G	AGCTGGATGCAGG	.	95.0	5.0	121.0	0.0	.	738
KAT6B	23522	hgsc.bcm.edu;bcgsc.ca	37	10	76788578	76788578	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_012330	exon18	c.T3996C	p.P1332P	TGCCCCTGTAAGT	.	103.0	5.0	114.0	0.0	.	.
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	2729648	2729648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KCNV2	NM_133497	exon2	c.T1559G	p.F520C	TGAACTTCATGCA	.	113.0	11.0	187.0	0.0	.	515
KIAA0317	9870	hgsc.bcm.edu;bcgsc.ca	37	14	75130431	75130431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA0317	NM_001039479	exon20	c.A2464G	p.M822V	AGAGCATGCCAAA	.	70.0	5.0	71.0	0.0	.	525
KIAA1324	57535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109715162	109715162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1324	NM_020775	exon5	c.C668A	p.T223N	TGAAGACCACAGA	.	153.0	63.0	236.0	0.0	.	157
KIAA1551	55196	hgsc.bcm.edu;bcgsc.ca	37	12	32135858	32135858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_018169	exon4	c.A1969G	p.T657A	TCCTCAACAAAAG	.	73.0	4.0	87.0	0.0	.	.
KIAA1586	57691	hgsc.bcm.edu;bcgsc.ca	37	6	56917492	56917492	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1586	NM_020931	exon4	c.T195C	p.F65F	TCTGTTTCCTAAA	.	81.0	4.0	96.0	0.0	.	44
KIAA1731	85459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93462654	93462654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1731	NM_033395	exon26	c.G7357A	p.V2453I	CCAGCTGTATCAG	.	80.0	28.0	86.0	0.0	.	22
KLHL30	377007	hgsc.bcm.edu;bcgsc.ca	37	2	239056574	239056574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLHL30	NM_198582	exon6	c.C1250T	p.A417V	TCTCGGCTGCCGG	.	76.0	4.0	95.0	0.0	.	22
KMO	8564	hgsc.bcm.edu;bcgsc.ca	37	1	241718930	241718930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KMO	NM_003679	exon5	c.A331G	p.R111G	GTAAGCAGAGAAA	.	84.0	4.0	94.0	0.0	.	92
KSR2	283455	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	117969500	117969500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KSR2	NM_173598	exon11	c.A1613G	p.Y538C	TATTTGTAGTAGT	.	40.0	4.0	68.0	0.0	.	1449
LAMP5	24141	hgsc.bcm.edu;bcgsc.ca	37	20	9496099	9496099	+	Splice_Site	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001199897	exon2	c.65-1G>T	.	TCCGCAGATACAA	.	97.0	6.0	73.0	0.0	.	.
LANCL2	55915	ucsc.edu;bcgsc.ca	37	7	55459529	55459529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LANCL2	NM_018697	exon2	c.A248G	p.D83G	TTAAAGATCTTCT	.	48.0	4.0	36.0	0.0	.	516
LAS1L	81887	hgsc.bcm.edu;bcgsc.ca	37	X	64744928	64744928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAS1L	NM_031206	exon8	c.A959G	p.E320G	ACAGCCTCCCTGG	.	65.0	4.0	54.0	0.0	.	196
LFNG	3955	hgsc.bcm.edu;bcgsc.ca	37	7	2552813	2552813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LFNG	NM_001166355	exon2	c.A70G	p.S24G	GCATGGAGCAAAT	.	98.0	4.0	140.0	0.0	.	636
LGI3	203190	hgsc.bcm.edu;bcgsc.ca	37	8	22012911	22012911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LGI3	NM_139278	exon2	c.A272G	p.Q91R	AAGAACTGCAGCA	.	32.0	4.0	113.0	0.0	.	91
LGR5	8549	hgsc.bcm.edu;bcgsc.ca	37	12	71955573	71955573	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LGR5	NM_003667	exon8	c.C798T	p.S266S	TCATAGCAACAAT	.	59.0	3.0	81.0	0.0	.	527
LIPC	3990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58840664	58840664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LIPC	NM_000236	exon6	c.G944A	p.S315N	GCCTGAGCTGCAA	.	135.0	64.0	172.0	0.0	.	91
LPHN1	22859	hgsc.bcm.edu;bcgsc.ca	37	19	14274128	14274128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LPHN1	NM_001008701	exon6	c.C500A	p.P167Q	TGCAGCGGGTCCT	.	77.0	4.0	134.0	0.0	.	523
LRRN1	57633	hgsc.bcm.edu;bcgsc.ca	37	3	3887042	3887042	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRN1	NM_020873	exon2	c.T717C	p.D239D	TCTGGATAGCCTT	.	66.0	4.0	79.0	0.0	.	90
LRRTM3	347731	hgsc.bcm.edu;bcgsc.ca	37	10	68857536	68857536	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRTM3	NM_178011	exon3	c.T1728A	p.H576Q	TGACCATAAACAG	.	91.0	4.0	93.0	0.0	.	93
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48823914	48823914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LUC7L3	NM_006107	exon9	c.G989A	p.R330Q	GAGATCGACGAAG	.	336.0	179.0	322.0	1.0	.	90
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	1	39816575	39816575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MACF1	NM_012090	exon39	c.G4898T	p.R1633L	CTCTTCGGGAAAA	.	51.0	5.0	90.0	0.0	.	165
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	17837556	17837556	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP1S	NM_018174	exon5	c.C1363T	p.R455X	TTCCTGCGAGAGC	.	46.0	10.0	49.0	0.0	.	90
MAP3K5	4217	hgsc.bcm.edu;bcgsc.ca	37	6	136882716	136882716	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP3K5	NM_005923	exon28	c.C3942A	p.T1314T	CCAGTCGGTAAGT	.	128.0	9.0	218.0	0.0	.	982
MCM10	55388	hgsc.bcm.edu;bcgsc.ca	37	10	13212949	13212949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCM10	NM_018518	exon3	c.C35T	p.T12I	TGCTGACCGCACT	.	121.0	5.0	138.0	0.0	.	653
MCM2	4171	hgsc.bcm.edu;bcgsc.ca	37	3	127325501	127325501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCM2	NM_004526	exon6	c.C942A	p.S314R	GACCAGCTGCACT	.	57.0	4.0	84.0	0.0	.	230
MCTP1	79772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	94245051	94245051	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCTP1	NM_024717	exon10	c.A1557G	p.E519E	AAATTGTTCCCTC	.	105.0	6.0	175.0	0.0	.	92
MED14	9282	hgsc.bcm.edu;bcgsc.ca	37	X	40522223	40522223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MED14	NM_004229	exon26	c.C3638T	p.S1213L	ATGACTGATCCAA	.	95.0	4.0	115.0	0.0	.	289
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29788190	29788190	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MEP1B	NM_005925	exon9	c.C875G	p.P292R	AGGTTCCCAGGGG	.	99.0	27.0	154.0	0.0	.	92
MID1	4281	hgsc.bcm.edu;bcgsc.ca	37	X	10437803	10437803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MID1	NM_001193278	exon7	c.G1372A	p.D458N	ACTCATCATCGGA	.	85.0	4.0	89.0	0.0	.	229
MIRLET7BHG	400931	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46505777	46505777	+	RNA	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	.	.	.	.	ACTCAAGATGCCA	.	142.0	56.0	206.0	0.0	.	.
MLF1IP	79682	hgsc.bcm.edu;bcgsc.ca	37	4	185646185	185646185	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLF1IP	NM_024629	exon4	c.T246C	p.A82A	TTCATCAGCATAT	.	83.0	5.0	111.0	0.0	.	90
MLL2	8085	hgsc.bcm.edu;bcgsc.ca	37	12	49421091	49421091	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLL2	NM_003482	exon48	c.A14658G	p.P4886P	TGGCTCTGGGGCG	.	114.0	5.0	172.0	0.0	.	612
MPDZ	8777	hgsc.bcm.edu;bcgsc.ca	37	9	13193255	13193255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MPDZ	NM_003829	exon14	c.A1714G	p.T572A	CCACTGTCGCTTC	.	60.0	4.0	78.0	0.0	.	231
MPHOSPH8	54737	hgsc.bcm.edu;bcgsc.ca	37	13	20237233	20237233	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MPHOSPH8	NM_017520	exon9	c.C1986T	p.V662V	AAATGTCCAGCAA	.	73.0	4.0	99.0	0.0	.	68
MS4A4A	51338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60073590	60073590	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MS4A4A	NM_148975	exon6	c.G564A	p.V188V	CATGGTGCTCCTC	.	458.0	95.0	674.0	0.0	.	90
MS4A8	83661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60476245	60476245	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_031457	exon5	c.C525A	p.A175A	TTACGCCTGGGGT	.	151.0	56.0	238.0	0.0	.	.
MSLN	10232	hgsc.bcm.edu;bcgsc.ca	37	16	818713	818713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MSLN	NM_013404	exon17	c.C1873A	p.L625I	CTGCTCCTAGCCT	.	59.0	4.0	149.0	0.0	.	91
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49940121	49940121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MST1R	NM_001244937	exon1	c.C922T	p.R308C	CCCGGCGCCTGCG	.	55.0	24.0	72.0	0.0	.	1406
MUC2	4583	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	1092653	1092653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MUC2	NM_002457	exon30	c.C4472A	p.T1491K	CCACCACAACCAC	.	2125.0	391.0	3967.0	2.0	.	90
MYO9A	4649	hgsc.bcm.edu;bcgsc.ca	37	15	72152137	72152137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO9A	NM_006901	exon34	c.T6092C	p.L2031S	TTGCATACTGAAA	.	53.0	4.0	97.0	0.0	.	93
MYPN	84665	hgsc.bcm.edu;bcgsc.ca	37	10	69925542	69925542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYPN	NM_001256267	exon10	c.A1567G	p.T523A	TACGGCACAGTGT	.	76.0	4.0	85.0	0.0	.	95
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41946891	41946891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NAA16	NM_024561	exon17	c.T2080C	p.S694P	CTGCAGTCTGTCA	.	89.0	4.0	121.0	0.0	.	90
NBEA	26960	hgsc.bcm.edu;bcgsc.ca	37	13	36046654	36046654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NBEA	NM_015678	exon41	c.T6566C	p.F2189S	CTGCCTTCAAGAA	.	63.0	4.0	100.0	0.0	.	144
NCAPG2	54892	hgsc.bcm.edu;bcgsc.ca	37	7	158472756	158472756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCAPG2	NM_017760	exon11	c.T1042C	p.S348P	CATTTGATCGAAC	.	120.0	5.0	146.0	0.0	.	272
NCKAP1L	3071	hgsc.bcm.edu;bcgsc.ca	37	12	54932744	54932744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCKAP1L	NM_005337	exon30	c.T3260C	p.L1087P	TTTCTCTGCTCAT	.	66.0	4.0	99.0	0.0	.	93
NEDD4	4734	hgsc.bcm.edu;bcgsc.ca	37	15	56125247	56125247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NEDD4	NM_198400	exon20	c.G3527A	p.G1176D	GATGTGCCAGTGA	.	82.0	5.0	82.0	0.0	.	723
NME1	4830	hgsc.bcm.edu;bcgsc.ca	37	17	49237415	49237415	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NME1	NM_198175	exon4	c.C276T	p.Y92Y	GAAATACATGCAC	.	116.0	5.0	77.0	0.0	.	251
NSUN7	79730	hgsc.bcm.edu;bcgsc.ca	37	4	40800850	40800850	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NSUN7	NM_024677	exon10	c.A1329G	p.P443P	TTTTCCAGAAGAA	.	94.0	4.0	109.0	0.0	.	90
OAS1	4938	hgsc.bcm.edu;bcgsc.ca	37	12	113357220	113357220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OAS1	NM_016816	exon6	c.G1065T	p.E355D	CGATGAGACCGAC	.	77.0	5.0	93.0	0.0	.	70
OAS2	4939	hgsc.bcm.edu;bcgsc.ca	37	12	113443013	113443013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OAS2	NM_002535	exon7	c.C1454T	p.A485V	TTCCTGCCTTTAA	.	65.0	4.0	81.0	0.0	.	91
OLFM2	93145	hgsc.bcm.edu;bcgsc.ca	37	19	9968053	9968053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OLFM2	NM_058164	exon4	c.C466A	p.L156I	CGGAGAGATTCCT	.	62.0	4.0	89.0	0.0	.	132
OR5AU1	390445	hgsc.bcm.edu;bcgsc.ca	37	14	21623682	21623682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR5AU1	NM_001004731	exon1	c.C503A	p.A168D	GCCATGGCAGCGA	.	81.0	4.0	80.0	0.0	.	68
OTOL1	131149	hgsc.bcm.edu;bcgsc.ca	37	3	161221321	161221321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001080440	exon4	c.G1025T	p.R342L	TGCCCCGGTCGGC	.	106.0	5.0	164.0	0.0	.	.
PAK1	5058	broad.mit.edu;bcgsc.ca	37	11	77090985	77090985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PAK1	NM_001128620	exon3	c.A245G	p.E82G	GTGTGTTCAAAAT	.	119.0	6.0	160.0	0.0	.	957
PAN2	9924	hgsc.bcm.edu;bcgsc.ca	37	12	56726754	56726754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PAN2	NM_014871	exon2	c.A125G	p.E42G	ACTCCCTCTGGGT	.	61.0	4.0	57.0	0.0	.	702
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140563037	140563037	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCDHB16	NM_020957	exon1	c.T903A	p.V301V	GGAAGTTCGACTG	.	39.0	27.0	72.0	0.0	.	92
PCM1	5108	hgsc.bcm.edu;bcgsc.ca	37	8	17868140	17868140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCM1	NM_006197	exon32	c.A5183G	p.H1728R	AAGATCATGGCTC	.	71.0	4.0	156.0	0.0	.	742
PCSK2	5126	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	17410143	17410143	+	Silent	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCSK2	NM_002594	exon7	c.A684T	p.G228G	AGTTGGAGTAGCA	.	79.0	32.0	81.0	0.0	.	157
PCYT1B	9468	hgsc.bcm.edu;bcgsc.ca	37	X	24597452	24597452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCYT1B	NM_001163265	exon6	c.T689C	p.L230P	ACATTCAGTTCCT	.	122.0	5.0	185.0	0.0	.	130
PDCD11	22984	hgsc.bcm.edu;bcgsc.ca	37	10	105184772	105184772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDCD11	NM_014976	exon20	c.T2795C	p.V932A	CGATTGTGCAGCA	.	77.0	4.0	91.0	0.0	.	275
PDE6G	5148	hgsc.bcm.edu;bcgsc.ca	37	17	79618688	79618688	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDE6G	NM_002602	exon3	c.A174G	p.E58E	CAGGCCTTCCATT	.	87.0	4.0	102.0	0.0	.	90
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96762199	96762199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDHA2	NM_005390	exon1	c.C898A	p.R300S	AGTTATCGTACAC	.	71.0	37.0	110.0	0.0	.	90
PDK1	5163	hgsc.bcm.edu;bcgsc.ca	37	2	173423557	173423557	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDK1	NM_002610	exon2	c.C318T	p.S106S	ACCATCCGTTCAA	.	99.0	5.0	138.0	0.0	.	978
PDS5A	23244	hgsc.bcm.edu;bcgsc.ca	37	4	39850470	39850470	+	Splice_Site	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001100399	exon29	c.3339+1G>A	.	AAATTACCTTTTC	.	65.0	4.0	80.0	0.0	.	.
PEX5	5830	hgsc.bcm.edu;bcgsc.ca	37	12	7344169	7344169	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PEX5	NM_001131023	exon5	c.T366C	p.P122P	AGCCCCTGGTGTG	.	66.0	4.0	82.0	0.0	.	91
PHYHD1	254295	hgsc.bcm.edu;bcgsc.ca	37	9	131702690	131702690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PHYHD1	NM_001100876	exon10	c.T500C	p.L167P	AGCCCCTGGGCCG	.	87.0	4.0	107.0	0.0	.	90
PIBF1	10464	hgsc.bcm.edu;bcgsc.ca	37	13	73428292	73428292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIBF1	NM_006346	exon10	c.A1321G	p.R441G	TTAGACAGGTAAG	.	80.0	4.0	100.0	0.0	.	136
PIGL	9487	hgsc.bcm.edu;bcgsc.ca	37	17	16137378	16137378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIGL	NM_004278	exon2	c.A329G	p.D110G	TTATTGACAACAG	.	54.0	4.0	95.0	0.0	.	226
PKP2	5318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	33031343	33031343	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PKP2	NM_004572	exon3	c.G471A	p.E157E	AGCCCTCTCCGGG	.	110.0	15.0	138.0	0.0	.	92
PLD2	5338	hgsc.bcm.edu;bcgsc.ca	37	17	4712848	4712848	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLD2	NM_002663	exon7	c.614+2T>C	.	GGACTGTGAGTGT	.	110.0	5.0	114.0	0.0	.	291
PLK2	10769	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	57753099	57753099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK2	NM_006622	exon7	c.C917A	p.P306H	TTGGCAGGAGCCA	.	20.0	4.0	46.0	0.0	.	409
PLK4	10733	hgsc.bcm.edu;bcgsc.ca	37	4	128803010	128803010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK4	NM_001190799	exon2	c.G55T	p.G19C	CTGCTTGGTAAAG	.	98.0	4.0	181.0	0.0	.	333
PMEPA1	56937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	56228121	56228121	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PMEPA1	NM_020182	exon3	c.G286T	p.E96X	TGCTCTCCGAGGG	.	109.0	35.0	83.0	0.0	.	227
POLE	5426	hgsc.bcm.edu;bcgsc.ca	37	12	133256186	133256186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POLE	NM_006231	exon6	c.A475G	p.T159A	CCACAGTGTGGAA	.	78.0	4.0	110.0	0.0	.	233
POMT2	29954	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	77746807	77746807	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POMT2	NM_013382	exon17	c.1654-1G>T	.	GTTCCCCTGCATG	.	159.0	81.0	252.0	2.0	.	91
POMT2	29954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	77746806	77746806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POMT2	NM_013382	exon16	c.G1654T	p.G552W	TGTTCCCCTGCAT	.	166.0	83.0	256.0	0.0	.	91
PPEF1	5475	hgsc.bcm.edu;bcgsc.ca	37	X	18797263	18797263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPEF1	NM_152226	exon10	c.G694T	p.G232W	AACAGAGGGAACC	.	91.0	4.0	84.0	0.0	.	226
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7670813	7670813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPFIBP2	NM_003621	exon21	c.C2049G	p.I683M	CAGCATCAAATGT	.	199.0	67.0	303.0	0.0	.	273
PPIE	10450	hgsc.bcm.edu;bcgsc.ca	37	1	40218983	40218983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPIE	NM_006112	exon10	c.C862T	p.P288S	GGGAAGCCAAAGC	.	43.0	4.0	128.0	0.0	.	90
PPP4R1	9989	ucsc.edu;bcgsc.ca	37	18	9595031	9595031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP4R1	NM_001042388	exon3	c.A173G	p.E58G	ATGTTCTCACTTG	.	48.0	4.0	62.0	0.0	.	227
PRRG1	5638	hgsc.bcm.edu;bcgsc.ca	37	X	37312753	37312753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRRG1	NM_001173490	exon4	c.T536C	p.V179A	GCCAAGTGAACCT	.	55.0	4.0	66.0	0.0	.	194
PSMC4	5704	hgsc.bcm.edu;bcgsc.ca	37	19	40480515	40480515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PSMC4	NM_006503	exon5	c.T554C	p.L185P	TCCCGCTCACGCA	.	62.0	4.0	94.0	0.0	.	91
PTPN5	84867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18754887	18754887	+	Silent	SNP	G	G	A	rs144666949		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTPN5	NM_032781	exon11	c.C1113T	p.A371A	CTGAGTGGCGATG	.	86.0	27.0	95.0	0.0	G|1.000;A|0.000	229
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	52321594	52321594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PXDNL	NM_144651	exon17	c.C2590T	p.R864C	TGGAGCGCGCGAA	.	100.0	6.0	87.0	0.0	.	70
PXN	5829	hgsc.bcm.edu;bcgsc.ca	37	12	120651722	120651722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PXN	NM_001243756	exon10	c.G1474T	p.G492C	CGCAGCCGCCACA	.	71.0	4.0	103.0	0.0	.	660
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9318700	9318700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PZP	NM_002864	exon18	c.A2206G	p.T736A	GCACCGTTTCAGG	.	74.0	4.0	143.0	0.0	.	157
RALBP1	10928	bcgsc.ca;mdanderson.org	37	18	9535701	9535701	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RALBP1	NM_006788	exon10	c.T1734C	p.H578H	AATTCATGAGGAG	.	18.0	3.0	29.0	0.0	.	522
RBBP8	5932	hgsc.bcm.edu;bcgsc.ca	37	18	20572755	20572755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBBP8	NM_203292	exon11	c.C965A	p.P322H	AATTACCTACTCG	.	81.0	4.0	130.0	0.0	.	659
RBBP8	5932	hgsc.bcm.edu;bcgsc.ca	37	18	20573367	20573367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBBP8	NM_203292	exon11	c.A1577G	p.K526R	CTTTGAAGACCAT	.	61.0	4.0	123.0	0.0	.	659
RBM10	8241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	47041174	47041185	+	In_Frame_Del	DEL	GCTCAAATCTGA	GCTCAAATCTGA	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	GCTCAAATCTGA	GCTCAAATCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM10	NM_001204468	exon15	c.1797_1808del	p.599_603del	CGCTGTGCTCAAA	.	31.0	18.0	111.0	0.0	.	626
RCN2	5955	hgsc.bcm.edu;bcgsc.ca	37	15	77241444	77241444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCN2	NM_001271837	exon8	c.G889T	p.G297C	TTGAATGGTGACA	.	74.0	5.0	62.0	0.0	.	90
RCOR2	283248	hgsc.bcm.edu;bcgsc.ca	37	11	63680410	63680410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCOR2	NM_173587	exon9	c.A901G	p.M301V	GCTTCATGCTCTG	.	52.0	4.0	89.0	0.0	.	92
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63680389	63680389	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCOR2	NM_173587	exon9	c.C922T	p.L308L	GGCGCAGGCTGCT	.	54.0	14.0	101.0	0.0	.	92
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145740718	145740718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RECQL4	NM_004260	exon7	c.A1382T	p.Q461L	GCCAACTGCCCTG	.	166.0	10.0	154.0	0.0	.	1083
REV3L	5980	hgsc.bcm.edu;bcgsc.ca	37	6	111686477	111686477	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	REV3L	NM_002912	exon15	c.A6744G	p.T2248T	TGCTTGTGTTAAC	.	89.0	4.0	162.0	0.0	.	294
RIMBP3C	150221	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	21742770	21742770	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001128633	exon1	c.C4623T	p.A1541A	TGTGGCCCACCTC	.	1272.0	258.0	1272.0	0.0	.	.
RNF139	11236	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	125487462	125487462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNF139	NM_007218	exon1	c.T112C	p.F38L	GCCATCTTCAACT	.	58.0	6.0	66.0	0.0	.	226
RPIA	22934	hgsc.bcm.edu;bcgsc.ca	37	2	89036184	89036184	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RPIA	NM_144563	exon7	c.C729T	p.V243V	GGCTGTCAACAAG	.	70.0	4.0	94.0	0.0	.	91
RRBP1	6238	hgsc.bcm.edu;bcgsc.ca	37	20	17596120	17596120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RRBP1	NM_004587	exon23	c.G2707T	p.G903C	GGGGGCCGGCTGT	.	55.0	4.0	76.0	0.0	.	92
RRN3	54700	hgsc.bcm.edu;bcgsc.ca	37	16	15168676	15168676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RRN3	NM_018427	exon11	c.G901A	p.E301K	GCCGTTCAGGACC	.	71.0	4.0	119.0	0.0	.	91
RYR2	6262	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	237947885	237947885	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RYR2	NM_001035	exon90	c.C12873T	p.F4291F	TATTTTCATGACC	.	42.0	4.0	69.0	0.0	.	158
SALL1	6299	hgsc.bcm.edu;bcgsc.ca	37	16	51175284	51175284	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SALL1	NM_002968	exon2	c.C849A	p.S283S	TAGCGTGGACAAG	.	69.0	4.0	110.0	0.0	.	98
SCUBE2	57758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9069079	9069079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCUBE2	NM_020974	exon16	c.G1826T	p.R609L	TCGGTTCGCTTTA	.	174.0	17.0	228.0	0.0	.	92
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71335078	71335078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SDK2	NM_001144952	exon45	c.G6167A	p.G2056E	TCACTTCCCTGGG	.	537.0	279.0	565.0	0.0	.	24
SEC14L6	730005	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	30921660	30921660	+	Silent	SNP	G	G	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001193336	exon10	c.C849G	p.S283S	GCCCACGGACCTC	.	127.0	19.0	110.0	0.0	.	.
SERPINI2	5276	ucsc.edu;bcgsc.ca	37	3	167164212	167164212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SERPINI2	NM_001012303	exon9	c.C1139A	p.P380Q	AGAAATGGATGAT	.	42.0	4.0	76.0	0.0	.	228
SEZ6L2	26470	hgsc.bcm.edu;bcgsc.ca	37	16	29891258	29891258	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SEZ6L2	NM_001243332	exon9	c.T1500C	p.P500P	GGGCCCAGGGGGC	.	70.0	4.0	95.0	0.0	.	92
SFXN2	118980	hgsc.bcm.edu;bcgsc.ca	37	10	104486433	104486433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SFXN2	NM_178858	exon2	c.C40A	p.R14S	GCCCCCCGTTGGG	.	64.0	4.0	99.0	0.0	.	90
SGCB	6443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52890227	52890227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SGCB	NM_000232	exon6	c.T853C	p.Y285H	GCTTGTAGCGTAC	.	133.0	17.0	183.0	0.0	.	90
SH2D7	646892	hgsc.bcm.edu;bcgsc.ca	37	15	78386536	78386536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001101404	exon2	c.T259C	p.S87P	ATCTTGTCCTACA	.	63.0	4.0	80.0	0.0	.	.
SHMT2	6472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57625269	57625269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SHMT2	NM_005412	exon3	c.C237A	p.F79L	GAACTTCTGCAGC	.	148.0	80.0	179.0	0.0	.	91
SLC14A2	8170	hgsc.bcm.edu;bcgsc.ca	37	18	43204717	43204717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC14A2	NM_001242692	exon3	c.T88C	p.W30R	CCGAGCTGGCCCT	.	68.0	5.0	91.0	0.0	.	93
SLC22A11	55867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64323631	64323631	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC22A11	NM_018484	exon1	c.C160T	p.L54L	CACATGCTGGACA	.	90.0	34.0	177.0	0.0	.	91
SLC22A17	51310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23816000	23816000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC22A17	NM_020372	exon9	c.C1474A	p.L492M	GCAGCAGCATAAT	.	39.0	13.0	38.0	0.0	.	226
SLC51A	200931	hgsc.bcm.edu;bcgsc.ca	37	3	195955119	195955119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_152672	exon5	c.T496C	p.C166R	TGCCCCTGCTGTC	.	59.0	4.0	82.0	0.0	.	.
SLC5A5	6528	hgsc.bcm.edu;bcgsc.ca	37	19	17988801	17988801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC5A5	NM_000453	exon7	c.T868C	p.F290L	GGCCTGTTCCTGA	.	75.0	4.0	82.0	0.0	.	93
SLC6A9	6536	hgsc.bcm.edu;bcgsc.ca	37	1	44468248	44468248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC6A9	NM_201649	exon7	c.A1013G	p.E338G	GCTCCCTCCAGGG	.	73.0	4.0	140.0	0.0	.	90
SLC9A6	10479	hgsc.bcm.edu;bcgsc.ca	37	X	135067790	135067790	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC9A6	NM_006359	exon1	c.G129A	p.S43S	GGCTTCGGACGGC	.	66.0	4.0	63.0	0.0	.	131
SMAP2	64744	hgsc.bcm.edu;bcgsc.ca	37	1	40881972	40881972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMAP2	NM_022733	exon8	c.T806C	p.L269P	CCATTCTTTCACT	.	65.0	4.0	106.0	0.0	.	68
SMCHD1	23347	hgsc.bcm.edu;bcgsc.ca	37	18	2694533	2694533	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMCHD1	NM_015295	exon8	c.T882C	p.D294D	CTCTGATTCTGTT	.	89.0	4.0	133.0	0.0	.	46
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	18846414	18846414	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMG1	NM_015092	exon49	c.G8130A	p.L2710L	TCGCTGCAGGGTC	.	203.0	116.0	243.0	0.0	.	1160
SMG6	23293	hgsc.bcm.edu;bcgsc.ca	37	17	1964865	1964865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMG6	NM_017575	exon19	c.A4181G	p.N1394S	CGCAGGTTCCGGT	.	79.0	4.0	100.0	0.0	.	228
SMPX	23676	hgsc.bcm.edu;bcgsc.ca	37	X	21761892	21761892	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMPX	NM_014332	exon3	c.A108G	p.K36K	ACATTCTTTTCTT	.	68.0	4.0	60.0	0.0	.	130
SNCAIP	9627	hgsc.bcm.edu;bcgsc.ca	37	5	121739502	121739502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SNCAIP	NM_001242935	exon3	c.A26G	p.H9R	CACATCACTCAAG	.	95.0	6.0	142.0	0.0	.	92
SORL1	6653	hgsc.bcm.edu;bcgsc.ca	37	11	121478830	121478830	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SORL1	NM_003105	exon38	c.T5184C	p.S1728S	GACTAGTCGTGGA	.	76.0	4.0	75.0	0.0	.	228
SOX13	9580	hgsc.bcm.edu;bcgsc.ca	37	1	204083543	204083543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SOX13	NM_005686	exon3	c.A314G	p.N105S	ACTTCAACCGAAA	.	92.0	4.0	166.0	0.0	.	514
SPARC	6678	hgsc.bcm.edu;bcgsc.ca	37	5	151049257	151049257	+	Missense_Mutation	SNP	T	T	C	rs200223394		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPARC	NM_003118	exon6	c.A419G	p.K140R	TGGAGCTTGTGGC	.	123.0	5.0	163.0	0.0	T|0.999;C|0.001	514
SPEN	23013	hgsc.bcm.edu;bcgsc.ca	37	1	16261624	16261624	+	Silent	SNP	C	C	A	rs151181793	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPEN	NM_015001	exon11	c.C8889A	p.P2963P	TGACCCCGTCACC	.	80.0	4.0	196.0	0.0	C|0.998;T|0.002	298
SPG21	51324	hgsc.bcm.edu;bcgsc.ca	37	15	65261687	65261687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPG21	NM_001127889	exon7	c.G574T	p.G192C	TCTGACCCAAACT	.	94.0	4.0	88.0	0.0	.	90
STARD4	134429	hgsc.bcm.edu;bcgsc.ca	37	5	110837775	110837775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STARD4	NM_139164	exon4	c.A167G	p.Q56R	ACACCTTGGGCTT	.	70.0	4.0	99.0	0.0	.	227
STK17A	9263	hgsc.bcm.edu;bcgsc.ca	37	7	43663335	43663335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STK17A	NM_004760	exon6	c.G768T	p.M256I	TGTCATGCTTACA	.	82.0	5.0	81.0	0.0	.	335
SUPT20H	55578	hgsc.bcm.edu;bcgsc.ca	37	13	37591496	37591496	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_017569	exon23	c.A1881G	p.P627P	ACCACCTGGAAGC	.	137.0	6.0	207.0	0.0	.	.
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91769904	91769904	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SV2B	NM_014848	exon3	c.G411A	p.E137E	TGCAGAGAAGGAC	.	80.0	26.0	76.0	0.0	.	97
SYCE1L	100130958	hgsc.bcm.edu;bcgsc.ca	37	16	77243331	77243331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001129979	exon6	c.C322A	p.Q108K	ATCCTCCAGATGC	.	54.0	4.0	89.0	0.0	.	.
SYNJ2	8871	hgsc.bcm.edu;bcgsc.ca	37	6	158449995	158449995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYNJ2	NM_003898	exon3	c.A422G	p.D141G	GCTTTGACCTGAC	.	61.0	5.0	114.0	0.0	.	227
TANGO6	79613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68953121	68953121	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_024562	exon12	c.A2126T	p.Q709L	CTGTTCAGGTGAG	.	112.0	23.0	220.0	0.0	.	.
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32820940	32820940	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAP1	NM_000593	exon1	c.G654T	p.G218G	GAGGCTCCCGAGT	.	103.0	32.0	129.0	0.0	.	91
TBC1D23	55773	hgsc.bcm.edu;bcgsc.ca	37	3	100002653	100002653	+	Silent	SNP	C	C	T	rs200870879	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBC1D23	NM_001199198	exon4	c.C474T	p.P158P	CATTCCCAGGTAA	.	83.0	4.0	108.0	0.0	C|0.999;G|0.000	92
TBX22	50945	hgsc.bcm.edu;bcgsc.ca	37	X	79282236	79282236	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBX22	NM_016954	exon5	c.C667A	p.R223R	AAACCCCGAGTGC	.	93.0	4.0	83.0	0.0	.	628
TGFB3	7043	hgsc.bcm.edu;bcgsc.ca	37	14	76437504	76437504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TGFB3	NM_003239	exon3	c.T611C	p.V204A	TCAGTGACATCAA	.	53.0	4.0	62.0	0.0	.	524
TGM3	7053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2290970	2290970	+	Missense_Mutation	SNP	C	C	T	rs139117716		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TGM3	NM_003245	exon3	c.C328T	p.R110W	ATAGGACGGTACA	.	131.0	51.0	143.0	0.0	C|1.000;T|0.000	139
THOC5	8563	hgsc.bcm.edu;bcgsc.ca	37	22	29939435	29939435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THOC5	NM_001002878	exon5	c.A337G	p.R113G	GATCTCTTCCTTT	.	182.0	8.0	109.0	0.0	.	585
TIPRL	261726	hgsc.bcm.edu;bcgsc.ca	37	1	168169255	168169255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TIPRL	NM_152902	exon7	c.G790T	p.D264Y	CCAGCAGACTCAC	.	91.0	4.0	101.0	0.0	.	91
TLE4	7091	hgsc.bcm.edu;bcgsc.ca	37	9	82337475	82337475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLE4	NM_007005	exon18	c.T2096C	p.L699P	TACATCTTCATGA	.	125.0	5.0	207.0	0.0	.	524
TLR5	7100	hgsc.bcm.edu;bcgsc.ca	37	1	223286221	223286221	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLR5	NM_003268	exon6	c.C153A	p.L51L	CAGCAGGAGCCTC	.	123.0	5.0	122.0	0.0	.	525
TMEM135	65084	hgsc.bcm.edu;bcgsc.ca	37	11	87029247	87029247	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM135	NM_022918	exon13	c.T1146C	p.Y382Y	CATCTATTCCATC	.	69.0	4.0	103.0	0.0	.	514
TMEM214	54867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27258486	27258486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM214	NM_017727	exon4	c.G527A	p.R176Q	TGAGCCGGGAGCT	.	59.0	15.0	88.0	0.0	.	115
TNNI3	7137	broad.mit.edu;bcgsc.ca	37	19	55663250	55663250	+	Silent	SNP	G	G	A	rs200085986		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNNI3	.	.	.	.	TGCATCGATGTTC	.	227.0	11.0	232.0	0.0	.	92
TNRC18	84629	hgsc.bcm.edu;bcgsc.ca	37	7	5396822	5396822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNRC18	NM_001080495	exon16	c.A4919G	p.D1640G	AACTTGTCCTGCT	.	199.0	9.0	212.0	0.0	.	46
TNRC6A	27327	hgsc.bcm.edu;bcgsc.ca	37	16	24834848	24834848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNRC6A	NM_014494	exon25	c.C5609A	p.P1870H	CTTCTCCCGGCTG	.	61.0	4.0	104.0	0.0	.	92
TNXB	7148	hgsc.bcm.edu;bcgsc.ca	37	6	32057134	32057134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNXB	NM_019105	exon5	c.T2381C	p.F794S	GCTGTGAATGGGG	.	65.0	4.0	58.0	0.0	.	90
TOP2A	7153	hgsc.bcm.edu;bcgsc.ca	37	17	38556308	38556308	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TOP2A	NM_001067	exon24	c.C3012T	p.D1004D	TACGTGGTCAAAA	.	57.0	4.0	57.0	0.0	.	655
TRIM3	10612	hgsc.bcm.edu;bcgsc.ca	37	11	6472512	6472512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIM3	NM_001248006	exon8	c.G1690A	p.G564S	ACTTGCCCTCAGG	.	53.0	4.0	85.0	0.0	.	714
TRIM46	80128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155154372	155154372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIM46	NM_025058	exon9	c.C1633T	p.R545W	CGAGAGCGGCTGG	.	127.0	20.0	162.0	1.0	.	228
TRIM51	84767	hgsc.bcm.edu;bcgsc.ca	37	11	55653258	55653258	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_032681	exon2	c.T354C	p.S118S	CAACTCTCAGGAG	.	96.0	5.0	158.0	0.0	.	.
TSG101	7251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18502150	18502150	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TSG101	NM_006292	exon10	c.G1116A	p.Q372Q	CCTCAGCTGGAAC	.	127.0	50.0	215.0	0.0	.	90
TTF2	8458	hgsc.bcm.edu;bcgsc.ca	37	1	117641477	117641477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTF2	NM_003594	exon22	c.G3292T	p.A1098S	GATCAAGCTTGTG	.	81.0	4.0	124.0	0.0	.	91
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179413062	179413062	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTN	NM_001267550	exon339	c.T93291C	p.G31097G	ACCAACACCATAC	.	56.0	4.0	86.0	0.0	.	636
UBAP2	55833	hgsc.bcm.edu;bcgsc.ca	37	9	33996317	33996317	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBAP2	NM_018449	exon4	c.A192G	p.T64T	TTTCCCTGTCACT	.	119.0	5.0	168.0	0.0	.	94
UCHL3	7347	hgsc.bcm.edu;bcgsc.ca	37	13	76135000	76135000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UCHL3	NM_006002	exon3	c.T166C	p.F56L	CTTCTCTTTCCTA	.	105.0	5.0	135.0	0.0	.	522
UGDH	7358	hgsc.bcm.edu;bcgsc.ca	37	4	39511398	39511398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UGDH	NM_003359	exon6	c.T793C	p.F265L	TTAGAAACTTGTT	.	77.0	4.0	90.0	0.0	.	156
UNC13C	440279	hgsc.bcm.edu;bcgsc.ca	37	15	54305696	54305696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UNC13C	NM_001080534	exon1	c.A596G	p.E199G	ACTCAGAGTTAAG	.	90.0	4.0	141.0	0.0	.	51
UPB1	51733	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	24896100	24896100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UPB1	NM_016327	exon2	c.T130C	p.F44L	GAAGCTTTCGAAG	.	36.0	4.0	32.0	0.0	.	92
USH2A	7399	hgsc.bcm.edu;bcgsc.ca	37	1	215963585	215963585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USH2A	NM_206933	exon51	c.A9998G	p.D3333G	ATGGTATCTGACA	.	122.0	5.0	156.0	0.0	.	115
USP15	9958	hgsc.bcm.edu;bcgsc.ca	37	12	62783254	62783254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USP15	NM_001252078	exon12	c.G1517T	p.C506F	ATCTTTGTACAGC	.	89.0	5.0	149.0	0.0	.	1084
USP24	23358	hgsc.bcm.edu;bcgsc.ca	37	1	55537593	55537593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USP24	NM_015306	exon67	c.C7694A	p.T2565K	GCTAACGTGTCCT	.	66.0	4.0	137.0	0.0	.	521
UVRAG	7405	hgsc.bcm.edu;bcgsc.ca	37	11	75851784	75851784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UVRAG	NM_003369	exon15	c.C1427A	p.P476H	CAATCCCTGTTCC	.	74.0	4.0	119.0	0.0	.	229
VASH1	22846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77237533	77237533	+	Silent	SNP	G	G	A	rs202147705	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VASH1	NM_014909	exon3	c.G399A	p.Q133Q	CCACAGGTACAAT	.	357.0	98.0	452.0	0.0	.	90
VCL	7414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	75854142	75854142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VCL	NM_003373	exon11	c.C1466T	p.A489V	CCAAAGCAGCTGT	.	239.0	11.0	258.0	0.0	.	93
VPS36	51028	hgsc.bcm.edu;bcgsc.ca	37	13	53008984	53008984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS36	NM_016075	exon5	c.A385G	p.R129G	ATCTTCTTTGTGT	.	98.0	4.0	134.0	0.0	.	91
WDFY4	57705	hgsc.bcm.edu;bcgsc.ca	37	10	49939422	49939422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDFY4	NM_020945	exon9	c.T1397C	p.I466T	ATGAGATCCTGCG	.	69.0	5.0	68.0	0.0	.	22
WDR64	128025	hgsc.bcm.edu;bcgsc.ca	37	1	241886642	241886642	+	Silent	SNP	C	C	A	rs145843472	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR64	NM_144625	exon9	c.C1068A	p.T356T	CAGCACCAAGCCA	.	76.0	4.0	110.0	0.0	C|1.000;T|0.000	91
WDR65	149465	hgsc.bcm.edu;bcgsc.ca	37	1	43664184	43664184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR65	NM_001195831	exon8	c.A1295G	p.E432G	AAGAAGAGGCATA	.	73.0	4.0	93.0	0.0	.	91
WNK1	65125	hgsc.bcm.edu;bcgsc.ca	37	12	922831	922831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WNK1	NM_001184985	exon2	c.G783T	p.E261D	GTCTGAGAGGCAG	.	73.0	5.0	113.0	0.0	.	916
WNK1	65125	hgsc.bcm.edu;bcgsc.ca	37	12	994233	994233	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WNK1	NM_001184985	exon19	c.T5043C	p.V1681V	TGCAGTTGTCTCA	.	99.0	4.0	103.0	0.0	.	916
WSB2	55884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118472835	118472835	+	Silent	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WSB2	NM_018639	exon8	c.G1008C	p.G336G	GCAAAGCCCATTG	.	117.0	9.0	113.0	0.0	.	91
XYLB	9942	hgsc.bcm.edu;bcgsc.ca	37	3	38416703	38416703	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	XYLB	NM_005108	exon12	c.C957T	p.H319H	AGGCCACATCTTC	.	88.0	4.0	134.0	0.0	.	91
YME1L1	10730	hgsc.bcm.edu;bcgsc.ca	37	10	27409405	27409405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	YME1L1	NM_139312	exon14	c.A1541G	p.E514G	AAAATTTCTGTTC	.	88.0	4.0	117.0	0.0	.	91
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100334459	100334459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZAN	.	.	.	.	AATCGAACAGCTT	.	24.0	4.0	26.0	0.0	.	142
ZBTB32	27033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36206306	36206306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB32	NM_014383	exon2	c.C778A	p.P260T	GGCCAGCCTGCCC	.	34.0	8.0	80.0	0.0	.	92
ZKSCAN3	80317	hgsc.bcm.edu;bcgsc.ca	37	6	28333988	28333988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZKSCAN3	NM_024493	exon6	c.A1543G	p.K515E	TGTGGAAAAGGCT	.	72.0	4.0	88.0	0.0	.	92
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22156027	22156027	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF208	NM_007153	exon4	c.T1809C	p.H603H	ACCAGTATGAATT	.	62.0	31.0	63.0	0.0	.	7
ZNF280D	54816	hgsc.bcm.edu;bcgsc.ca	37	15	56924037	56924037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF280D	NM_017661	exon22	c.A2599G	p.K867E	GATCTTTAATCTG	.	74.0	4.0	93.0	0.0	.	46
ZNF284	342909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44590982	44590982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001037813	exon5	c.G1351A	p.G451R	CACACGGGAGAGA	.	154.0	52.0	168.0	0.0	.	.
ZNF302	55900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35173713	35173713	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_018443	exon3	c.C41G	p.S14C	ACTTCTCTCATGA	.	281.0	89.0	296.0	0.0	.	.
ZNF304	57343	hgsc.bcm.edu;bcgsc.ca	37	19	57867978	57867978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF304	NM_020657	exon3	c.G741T	p.E247D	TGCTGAGGTGAGA	.	94.0	4.0	92.0	0.0	.	91
ZNF317	57693	hgsc.bcm.edu;bcgsc.ca	37	19	9271853	9271853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF317	NM_020933	exon7	c.T1532C	p.F511S	AGGCCTTCAGGAA	.	70.0	5.0	65.0	0.0	.	90
ZNF318	24149	hgsc.bcm.edu;bcgsc.ca	37	6	43308192	43308192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF318	NM_014345	exon10	c.C3544A	p.R1182S	CTTGGCGGTCCAG	.	59.0	4.0	89.0	0.0	.	157
ZNF324	25799	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	58982592	58982592	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF324	NM_014347	exon4	c.G733T	p.E245X	TGGGACGAGCTGG	.	180.0	52.0	170.0	0.0	.	90
ZNF396	252884	hgsc.bcm.edu;bcgsc.ca	37	18	32953458	32953458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF396	NM_145756	exon3	c.A524G	p.Q175R	GCTCCCTGGAGCT	.	130.0	6.0	275.0	0.0	.	90
ZNF461	92283	hgsc.bcm.edu;bcgsc.ca	37	19	37134755	37134755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_153257	exon5	c.A242G	p.K81R	CAAGTTTTCCATG	.	92.0	4.0	96.0	0.0	.	.
ZNF511	118472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135123793	135123793	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF511	NM_145806	exon4	c.554+1G>A	.	CAGAAGGTAGGGA	.	44.0	16.0	34.0	0.0	.	90
ZNF512B	57473	bcgsc.ca;mdanderson.org	37	20	62594498	62594498	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF512B	NM_020713	exon12	c.C1918A	p.R640R	TGGATCGGTACGT	.	20.0	3.0	35.0	0.0	.	90
ZNF648	127665	hgsc.bcm.edu;bcgsc.ca	37	1	182026597	182026597	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF648	NM_001009992	exon2	c.C549A	p.S183S	CCCTGCGGACGTG	.	96.0	6.0	152.0	0.0	.	91
ZNF727	442319	hgsc.bcm.edu;bcgsc.ca	37	7	63538877	63538877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001159522	exon4	c.A1450G	p.N484D	GCAAAGAATGTGG	.	84.0	4.0	104.0	0.0	.	.
ZNF91	7644	hgsc.bcm.edu;bcgsc.ca	37	19	23542731	23542731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF91	NM_003430	exon4	c.C3050A	p.T1017N	TCTCCAGTGTGCA	.	88.0	4.0	72.0	0.0	.	90