Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127798378	127798378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADAM12	NM_021641	exon7	c.A644G	p.Y215C	TCCACATACTTAG	.	68.0	21.0	78.0	0.0	.	716
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100594228	100594228	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADAMTS17	NM_139057	exon16	c.C2169T	p.N723N	GTCACTGTTGATG	.	301.0	143.0	101.0	0.0	.	228
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131949435	131949435	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADCY8	NM_001115	exon5	c.C1365T	p.C455C	ACGAAGGCAGTGA	.	225.0	50.0	135.0	0.0	.	157
ANGPT4	51378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	861812	861812	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ANGPT4	NM_015985	exon6	c.951+2T>G	.	CCCCTAACCTTCC	.	144.0	51.0	118.0	0.0	.	92
ANKFN1	162282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	54558126	54558126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ANKFN1	NM_153228	exon16	c.C2047T	p.L683F	TACGAGCTCCAGA	.	129.0	22.0	71.0	0.0	.	136
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	10468488	10468488	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	APCDD1	NM_153000	exon2	c.C81T	p.L27L	TGCCCTCCTTCAT	.	135.0	51.0	110.0	0.0	.	90
ARL5C	390790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	37319108	37319108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ARL5C	NM_001143968	exon3	c.G111C	p.L37F	ATTGGTCAAGCTG	.	144.0	11.0	128.0	0.0	.	68
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	150878543	150878543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ASB10	NM_001142459	exon3	c.G587A	p.C196Y	TCCGCACACCTAT	.	111.0	41.0	82.0	0.0	.	226
ASTL	431705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96803391	96803391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ASTL	NM_001002036	exon2	c.G104A	p.G35D	CTGGTACCACAGG	.	80.0	11.0	66.0	0.0	.	90
BORA	79866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73312100	73312100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_024808	exon5	c.T307C	p.F103L	TCCTAGTTTTTCA	.	71.0	18.0	96.0	0.0	.	.
C11orf70	85016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	101952001	101952001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C11orf70	NM_032930	exon6	c.G664A	p.V222I	TTTAAAGTTTCAG	.	32.0	7.0	28.0	0.0	.	91
C19orf35	374872	hgsc.bcm.edu;bcgsc.ca	37	19	2280897	2280897	+	Missense_Mutation	SNP	C	C	T	rs146892754		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C19orf35	NM_198532	exon2	c.G34A	p.E12K	CGGGCTCGGGGGG	.	44.0	4.0	28.0	0.0	C|1.000;T|0.000	91
C1QTNF3	114899	broad.mit.edu;bcgsc.ca	37	5	34024046	34024056	+	Frame_Shift_Del	DEL	CATAAGGTACA	CATAAGGTACA	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CATAAGGTACA	CATAAGGTACA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C1QTNF3	NM_181435	exon5	c.758_768del	p.253_256del	ATTGTGCATAAGG	.	209.0	9.0	177.0	0.0	.	90
CCDC88C	440193	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	91780183	91780183	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CCDC88C	NM_001080414	exon15	c.G1977A	p.E659E	GACTTTCTCGGTG	.	49.0	17.0	62.0	1.0	.	25
CD101	9398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117554255	117554255	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CD101	NM_001256109	exon3	c.G508C	p.A170P	TGTGAGGCATCCA	.	235.0	34.0	138.0	0.0	.	94
CD200	4345	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112066565	112066565	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CD200	NM_001004196	exon5	c.T657A	p.S219S	CACGTCTGTTACC	.	189.0	29.0	129.0	1.0	.	90
CDH3	1001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68721498	68721498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CDH3	NM_001793	exon12	c.C1654A	p.Q552K	CCCCGTCAGATCA	.	214.0	111.0	247.0	0.0	.	950
CIDEC	63924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9911995	9911995	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CIDEC	NM_001199623	exon4	c.T258C	p.T86T	CATCAGAGTGTCC	.	68.0	11.0	46.0	0.0	.	90
CLCNKB	1188	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16374904	16374904	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CLCNKB	NM_000085	exon6	c.G565C	p.G189R	ACCATCGGGGAGC	.	595.0	67.0	519.0	1.0	.	91
CNTN5	53942	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99827704	99827704	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CNTN5	NM_001243270	exon7	c.C840T	p.V280V	TAGAGTCCTTAGT	.	225.0	86.0	197.0	1.0	.	366
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189873705	189873705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	COL3A1	NM_000090	exon48	c.G3581A	p.G1194D	CCCCTGGTCCTTG	.	110.0	16.0	131.0	0.0	.	581
DNAJB14	79982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100844269	100844270	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DNAJB14	NM_001031723	exon3	c.379_380insA	p.A127fs	TATAAGCTTTTTT	.	168.0	48.0	155.0	0.0	.	226
DPY19L1	23333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35013135	35013135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DPY19L1	NM_015283	exon8	c.A686G	p.H229R	AGAATATGAGTCA	.	132.0	37.0	113.0	0.0	.	68
DPY19L1	23333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35013143	35013143	+	Silent	SNP	T	T	C	rs61744367	byfrequency;alternate_allele	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DPY19L1	NM_015283	exon8	c.A678G	p.L226L	AGTCACTAGCAAC	.	133.0	38.0	114.0	0.0	T|0.974;A|0.026	68
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56494239	56494239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DST	NM_001723	exon18	c.A2673T	p.Q891H	TCTCCATTGCTAA	.	61.0	23.0	48.0	0.0	.	523
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131665456	131665456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	EBF3	NM_001005463	exon10	c.T961C	p.Y321H	ATTTGTAGGAGAG	.	154.0	49.0	117.0	0.0	.	91
EMR2	30817	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14877174	14877174	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	EMR2	NM_001271052	exon6	c.C507A	p.S169S	TTGTCCGGAGGTG	.	166.0	39.0	184.0	1.0	.	524
FBXL20	84961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37421707	37421707	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FBXL20	NM_001184906	exon13	c.838-1G>T	.	TGTTATCTGAAAG	.	83.0	36.0	56.0	0.0	.	659
FBXO28	23219	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	224345363	224345363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FBXO28	NM_015176	exon5	c.A1022T	p.N341I	GGCAGAATGAGGA	.	244.0	11.0	156.0	0.0	.	661
FLYWCH2	114984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2946481	2946481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FLYWCH2	NM_001142499	exon3	c.G31A	p.G11S	CAGGAGGGTGAGA	.	55.0	11.0	48.0	0.0	.	22
FZD2	2535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	42635258	42635258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FZD2	NM_001466	exon1	c.G202T	p.D68Y	CAGGAGGACGCAG	.	349.0	22.0	255.0	0.0	.	660
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121747764	121747764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	GLI2	NM_005270	exon13	c.G4274T	p.G1425V	ACATGGGGTCGGT	.	140.0	55.0	93.0	0.0	.	954
HPX	3263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	6453126	6453127	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	HPX	NM_000613	exon8	c.956_957del	p.319_319del	GACCAGATAGAGT	.	51.0	15.0	68.0	0.0	.	90
HSP90AA1	3320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	102551156	102551178	+	Frame_Shift_Del	DEL	CTTAATCTTCTTCTTCTTCTTCT	CTTAATCTTCTTCTTCTTCTTCT	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CTTAATCTTCTTCTTCTTCTTCT	CTTAATCTTCTTCTTCTTCTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	HSP90AA1	NM_001017963	exon6	c.1187_1209del	p.396_403del	CTTTTCCTTAATC	.	94.0	11.0	80.0	0.0	.	949
IL36B	27177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	113786633	113786633	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IL36B	NM_173178	exon4	c.T144A	p.C48X	GTCTCTACAGGCT	.	117.0	19.0	101.0	0.0	.	23
IQSEC3	440073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	271125	271125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IQSEC3	NM_001170738	exon8	c.T2477A	p.L826Q	GGGAGCTGGTGGT	.	215.0	106.0	232.0	0.0	.	560
IRS4	8471	broad.mit.edu;mdanderson.org	37	X	107979138	107979138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IRS4	NM_003604	exon1	c.G437A	p.R146H	ATCACGCGCCGCG	.	93.0	17.0	70.0	0.0	.	623
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599429	3599429	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IRX1	NM_024337	exon2	c.T367A	p.F123I	GGCCAGTTCCAAT	.	116.0	13.0	89.0	0.0	.	228
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	90651290	90651290	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KCNK13	NM_022054	exon2	c.G1170T	p.G390G	AGGGGGGGTGGGA	.	63.0	16.0	55.0	0.0	.	91
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	78761222	78761222	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KCNMA1	NM_001161352	exon19	c.A2209T	p.R737X	AGGCTCTCTCAAG	.	302.0	39.0	228.0	0.0	.	93
KLHL33	123103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20897132	20897132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_001109997	exon4	c.G1478T	p.R493L	AGCCATCGGCCCA	.	151.0	56.0	91.0	0.0	.	.
KRT1	3848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	53074087	53074087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KRT1	NM_006121	exon1	c.G46T	p.G16C	TGAAGCCCCCTCC	.	187.0	22.0	172.0	0.0	.	92
KRTAP5-7	440050	hgsc.bcm.edu;broad.mit.edu	37	11	71238649	71238675	+	In_Frame_Del	DEL	CTGCTGCTCCTCAGGCTGTGGGTCATC	CTGCTGCTCCTCAGGCTGTGGGTCATC	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CTGCTGCTCCTCAGGCTGTGGGTCATC	CTGCTGCTCCTCAGGCTGTGGGTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KRTAP5-7	NM_001012503	exon1	c.303_329del	p.101_110del	GCCCTGCTGCTGC	.	194.0	35.0	158.0	0.0	.	68
LPIN3	64900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	39985824	39985824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	LPIN3	NM_022896	exon15	c.A1948G	p.T650A	ACCATCACCAAGT	.	239.0	83.0	154.0	1.0	.	93
MIR1229	100302156	ucsc.edu;mdanderson.org	37	5	179225329	179225329	+	RNA	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	.	CGCTCTCCCCCAA	.	126.0	28.0	87.0	1.0	.	.
MS4A10	341116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60561505	60561505	+	Missense_Mutation	SNP	G	G	A	rs200380093		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	MS4A10	NM_206893	exon5	c.G421A	p.V141I	CTCTTCGTCATCT	.	170.0	78.0	146.0	0.0	.	92
MTAP	4507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21838002	21838002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	MTAP	NM_002451	exon5	c.C443T	p.T148M	CCAAAACGAGAGA	.	152.0	61.0	109.0	0.0	.	651
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29553694	29553694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NF1	NM_000267	exon18	c.T2243G	p.M748R	ATATGATGTCAAC	.	91.0	40.0	65.0	0.0	.	3353
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	129762747	129762747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NFRKB	NM_006165	exon1	c.A37G	p.T13A	CCATTGTTTCTTC	.	174.0	24.0	153.0	0.0	.	93
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5821238	5821238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NLGN4X	NM_181332	exon5	c.C1481A	p.P494H	ACATAGGGGACCT	.	589.0	134.0	431.0	0.0	.	195
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56244429	56244429	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NLRP9	NM_176820	exon2	c.C768G	p.I256M	GCTCAGGATAATT	.	49.0	13.0	48.0	0.0	.	294
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	79434590	79434590	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NRXN3	NM_004796	exon11	c.T1924A	p.F642I	GATGGCTTTCAGG	.	196.0	49.0	169.0	0.0	.	587
OR6C75	390323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55759405	55759405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	OR6C75	NM_001005497	exon1	c.G511T	p.V171L	TCCAATGTAATTG	.	117.0	42.0	106.0	0.0	.	70
PAX2	5076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102509535	102509535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PAX2	NM_003987	exon2	c.G76A	p.V26M	GGGGGGGTGTTTG	.	28.0	9.0	24.0	0.0	.	90
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138450774	138450774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PCDH18	NM_019035	exon1	c.C2469A	p.H823Q	AGTGGCGTGGGTG	.	170.0	56.0	180.0	0.0	.	185
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140348025	140348025	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PCDHAC2	NM_031883	exon1	c.A1674G	p.P558P	CCCACCACTGAGC	.	160.0	55.0	129.0	0.0	.	26
PEG10	23089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94293118	94293118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PEG10	NM_001172438	exon2	c.G478A	p.E160K	CTCCCAGAGAAGT	.	173.0	37.0	116.0	0.0	.	23
PFKFB1	5207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54978366	54978366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PFKFB1	NM_002625	exon8	c.A818C	p.D273A	CCAGAGTCACCTC	.	235.0	70.0	206.0	0.0	.	131
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58416548	58416548	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PHACTR3	NM_080672	exon11	c.G1545A	p.R515R	TGACAGGAGGGCA	.	256.0	38.0	218.0	0.0	.	93
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96435949	96435949	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PHF2	NM_005392	exon18	c.C2431T	p.L811L	TCCTGCCTGCAGA	.	233.0	78.0	182.0	0.0	.	91
PIK3CD	5293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9777146	9777146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PIK3CD	NM_005026	exon7	c.C910T	p.P304S	AAACCACCTCCCA	.	260.0	94.0	238.0	0.0	.	1311
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153034490	153034490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PLXNB3	NM_001163257	exon6	c.G1423A	p.D475N	CTGCTGGACAGCA	.	183.0	10.0	141.0	0.0	.	130
POC1B	282809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	89891089	89891089	+	Missense_Mutation	SNP	A	A	G	rs111514387		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	POC1B	NM_172240	exon3	c.T131C	p.L44P	TTCCATAGCATGA	.	157.0	22.0	87.0	1.0	A|0.500;G|0.500	92
PRELID1	27166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176732982	176732982	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PRELID1	NM_013237	exon3	c.C429G	p.V143V	AGCTGTCCAGGTG	.	76.0	22.0	54.0	1.0	.	90
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158906744	158906744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PYHIN1	NM_152501	exon2	c.A44G	p.E15G	GATTAGAGGTCAT	.	196.0	24.0	136.0	0.0	.	94
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	48941636	48941636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	RB1	NM_000321	exon10	c.A946T	p.N316Y	GTTGAAAATCTTT	.	11.0	5.0	23.0	0.0	.	3784
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	48951170	48951170	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	RB1,fibrous_tissue_and_uncertain_origin,malignant_fibrous_histiocytoma-pleomorphic_sarcoma,0	RB1	NM_000321	exon13	c.G1332A	p.Q444Q	ATCACAGGTAACT	.	43.0	21.0	47.0	0.0	.	3784
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	117709158	117709158	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ROS1	NM_002944	exon13	c.T1799G	p.L600X	GGGCCTAATTCAA	.	77.0	43.0	76.0	0.0	.	1353
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39018424	39018424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	RYR1	NM_000540	exon73	c.G10824T	p.Q3608H	GGACCAGGTGGGT	.	120.0	29.0	113.0	0.0	.	100
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70348970	70348970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SHANK2	NM_133266	exon3	c.A364T	p.N122Y	GGTGATTCCCTCC	.	148.0	43.0	102.0	0.0	.	94
SLC20A1	6574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113416962	113416962	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SLC20A1	NM_005415	exon8	c.A1230G	p.K410K	TGACAAACCCTTA	.	276.0	87.0	250.0	1.0	.	92
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142231676	142231676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SLC45A4	NM_001080431	exon2	c.G277A	p.G93S	ACTTACCGATGGC	.	231.0	46.0	113.0	0.0	.	70
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78202323	78202323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SNW1	NM_012245	exon7	c.C665G	p.P222R	GAAGGTGGTCCCC	.	30.0	9.0	35.0	0.0	.	187
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16261862	16261862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SPEN	NM_015001	exon11	c.A9127G	p.S3043G	CACCCCAGCAGTA	.	785.0	160.0	690.0	0.0	.	298
STMN3	50861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62275626	62275626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	STMN3	NM_015894	exon2	c.C56T	p.S19L	ATGAGCGACAGCA	.	126.0	41.0	85.0	0.0	.	90
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56398608	56398608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SUOX	NM_000456	exon6	c.G1435A	p.E479K	GGAGAGGAACAGC	.	210.0	22.0	169.0	0.0	.	90
SYT5	6861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55687105	55687105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SYT5	NM_003180	exon5	c.C512G	p.P171R	AAGTGAGGGTTCA	.	351.0	67.0	273.0	0.0	.	90
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	104640550	104640550	+	Missense_Mutation	SNP	C	C	A	rs139574028	byfrequency	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TACR3	NM_001059	exon1	c.G283T	p.V95L	CCACCACCACACC	.	174.0	11.0	189.0	0.0	C|0.999;A|0.001	525
TCAIM	285343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44442771	44442771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_173826	exon10	c.T1195A	p.W399R	CTCCAGTGGTTTA	.	83.0	29.0	49.0	0.0	.	.
THOP1	7064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2794767	2794767	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	THOP1	NM_003249	exon3	c.A235C	p.R79R	GTTCAGAGGAATA	.	77.0	12.0	88.0	0.0	.	92
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2591138	2591138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TMC2	NM_080751	exon12	c.A1487T	p.Y496F	AGAATTACCACCC	.	259.0	34.0	224.0	0.0	.	93
TMEM232	642987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	109976647	109976647	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_001039763	exon4	c.T288A	p.P96P	TGCAGCAGGAAGA	.	383.0	113.0	279.0	0.0	.	.
TMPRSS3	64699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43808542	43808542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TMPRSS3	NM_001256317	exon5	c.A416G	p.N139S	GCAACATTTGCGT	.	288.0	94.0	172.0	0.0	.	155
TREX1	11277	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48508185	48508185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TREX1	NM_016381	exon1	c.T296C	p.L99P	GTGCCCTGGAGAG	.	210.0	69.0	172.0	2.0	.	227
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38538717	38538717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TTC3	NM_001001894	exon33	c.G4201A	p.A1401T	CAGATTGCCTCTG	.	210.0	61.0	148.0	0.0	.	590
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179424403	179424403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TTN	NM_001267550	exon326	c.A86456G	p.D28819G	CCAGAGTCATTTC	.	134.0	22.0	164.0	0.0	.	636
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103324043	103324043	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	UBR5	NM_015902	exon19	c.C2338G	p.Q780E	TTTCCTGTTCTGC	.	386.0	58.0	195.0	0.0	.	761
UEVLD	55293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18579874	18579874	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	UEVLD	NM_018314	exon7	c.A616C	p.I206L	CTGCAATACCCTG	.	69.0	8.0	62.0	0.0	.	226
ZBTB11	27107	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	101383939	101383939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZBTB11	NM_014415	exon4	c.C1492T	p.P498S	CATCAGGGCCAAA	.	176.0	21.0	126.0	0.0	.	91
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	79733987	79733987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZFYVE16	NM_001105251	exon4	c.T1483G	p.C495G	TCTGATTGTTGTG	.	139.0	7.0	89.0	0.0	.	90
ZMYM4	9202	broad.mit.edu;bcgsc.ca	37	1	35855617	35855617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZMYM4	NM_005095	exon15	c.G2505A	p.M835I	GGAAATGAAACAT	.	136.0	6.0	140.0	1.0	.	291
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104642627	104642628	+	Missense_Mutation	DNP	AG	AG	CT	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	p.S1168L	CCTGACAGTCCTG	.	41.0	7.0	20.0	0.0	.	.
HTR3C	170572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183777775	183777776	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	p.P362Q	GCTGTCCCACTGC	.	65.0	26.0	66.0	0.0	.	.
CAND2	23066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12861637	12861638	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	.	.	.	p.D1000Y	TATCTCGGACCAG	.	194.0	52.0	129.0	0.0	.	.