Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AAR2	25980	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34828009	34828009	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	.	NM_001271874	exon2	c.T219A	p.P73P	AGGCCCTCGTATG	.	152.0	65.0	93.0	1.0	.	.
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57244474	57244474	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	AASDH	NM_181806	exon4	c.A508C	p.I170L	AACTTATGCTTTT	.	108.0	46.0	109.0	0.0	.	94
ACAA1	30	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38168072	38168072	+	Missense_Mutation	SNP	C	C	T	rs115896366		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ACAA1	NM_001607	exon8	c.G746A	p.R249H	CTGGGGCGGATAC	.	227.0	103.0	167.0	0.0	C|1.000;T|0.000	91
ACOT12	134526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80628350	80628350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ACOT12	NM_130767	exon13	c.A1337G	p.D446G	GGTTTGTCATCAT	.	100.0	42.0	76.0	0.0	.	92
ADNP	23394	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49509730	49509730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ADNP	NM_015339	exon5	c.G1521A	p.M507I	AATTAACATATGG	.	229.0	73.0	164.0	2.0	.	92
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26145823	26145823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ATP8A2	NM_016529	exon18	c.T1655C	p.I552T	TCATCATAGAAGC	.	63.0	28.0	69.0	0.0	.	138
C12orf68	387856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	48577984	48577984	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	C12orf68	NM_001013635	exon1	c.G79C	p.A27P	GTGCCGGCAGTGG	.	15.0	6.0	23.0	0.0	.	90
CD4	920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6927621	6927621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CD4	NM_000616	exon8	c.G1191T	p.M397I	GCCAATGGCCCTG	.	44.0	26.0	43.0	0.0	.	90
CDKN1A	1026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36652323	36652323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CDKN1A	NM_001220778	exon2	c.G445C	p.D149H	ATGACAGGTGCGG	.	154.0	116.0	55.0	0.0	.	872
CELF3	11189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151688481	151688481	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CELF3	NM_007185	exon1	c.G16C	p.A6P	TGATGGCATCCGG	.	122.0	53.0	58.0	0.0	.	91
CEP120	153241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	122722352	122722353	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CEP120	NM_153223	exon11	c.1439_1440del	p.480_480del	GAATGGATATGAG	.	66.0	29.0	58.0	0.0	.	91
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61749438	61749438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CHD7	NM_017780	exon17	c.G4052A	p.R1351K	TCGACAGATTCTC	.	144.0	62.0	99.0	0.0	.	141
CLTCL1	8218	ucsc.edu;bcgsc.ca	37	22	19220768	19220768	+	Missense_Mutation	SNP	C	C	G	rs116398959	alternate_allele	TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CLTCL1	NM_001835	exon9	c.G1442C	p.R481P	TTTGCCCGAAGGT	.	185.0	81.0	93.0	1.0	C|0.996;T|0.004	230
CNGA3	1261	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99012481	99012481	+	Missense_Mutation	SNP	G	G	T	rs104893614	bycluster;alternate_allele	TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CNGA3	NM_001298	exon8	c.G848T	p.R283L	TTTCCCGGCTCTT	.	238.0	125.0	180.0	1.0	G|1.000;A|0.000	96
CTSG	1511	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	25044580	25044580	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CTSG	NM_001911	exon2	c.94delC	p.R32fs	AGGGGCGGGAGTG	.	73.0	34.0	38.0	0.0	.	92
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17026254	17026254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	CUBN	NM_001081	exon30	c.T4375C	p.S1459P	TGGGAGAGTGGAA	.	122.0	45.0	89.0	0.0	.	166
DDX5	1655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62496261	62496261	+	Missense_Mutation	SNP	T	T	C	rs200823006		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	DDX5	NM_004396	exon13	c.A1625G	p.N542S	CTCCCATTGGTGT	.	128.0	40.0	110.0	0.0	T|0.999;C|0.000	228
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57475398	57475398	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	DNAH12	NM_178504	exon12	c.T1352A	p.L451H	AGACTGAGAAATT	.	49.0	18.0	39.0	0.0	.	47
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	111643179	111643179	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	EPB41L4A	NM_022140	exon2	c.G108C	p.T36T	ACCTTTCGTTGAC	.	102.0	47.0	72.0	0.0	.	91
EZR	7430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159206580	159206580	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	EZR	NM_003379	exon4	c.C228A	p.L76L	GAACTGGAGGGGA	.	202.0	78.0	128.0	0.0	.	70
FAM205A	259308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34726986	34726986	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	.	NM_001141917	exon5	c.252-1G>T	.	CCCTGGCTAGGAA	.	43.0	21.0	36.0	0.0	.	.
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	17954051	17954051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GEN1	NM_182625	exon8	c.A953G	p.K318R	TTAAGAAGTAAGT	.	63.0	31.0	82.0	0.0	.	359
GLYAT	10249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58491955	58491955	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GLYAT	NM_005838	exon2	c.G15A	p.L5L	ACCTTGCAATGGT	.	76.0	21.0	27.0	0.0	.	90
GORAB	92344	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	170508682	170508682	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GORAB	NM_152281	exon2	c.C468A	p.C156X	AGATTGCAAATTG	.	139.0	31.0	54.0	0.0	.	90
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	112723996	112723996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GPR85	NM_001146265	exon3	c.C781A	p.Q261K	CATTTTGCCTGAT	.	97.0	20.0	82.0	0.0	.	91
GRM6	2916	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	178408750	178408750	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GRM6	NM_000843	exon10	c.G2542T	p.E848X	TCTGCTCTGGATG	.	234.0	101.0	98.0	1.0	.	588
GRM7	2917	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	7620178	7620178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	GRM7	NM_000844	exon8	c.C1585T	p.P529S	TGTAAGCCAGGAC	.	240.0	88.0	154.0	2.0	.	526
HMGCS1	3157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43297200	43297200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	HMGCS1	NM_001098272	exon5	c.A643G	p.I215V	CTACTATAGGATA	.	121.0	54.0	91.0	0.0	.	90
ITGB3	3690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45361990	45361990	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ITGB3	NM_000212	exon4	c.A543G	p.A181A	CGGGGCATTTGTG	.	136.0	49.0	122.0	0.0	.	714
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138602612	138602612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	KIAA1549	NM_020910	exon2	c.G1760T	p.S587I	AAAACACTCGGGT	.	129.0	61.0	104.0	0.0	.	369
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123055417	123055429	+	Frame_Shift_Del	DEL	TTTCAGATAATTC	TTTCAGATAATTC	-	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	TTTCAGATAATTC	TTTCAGATAATTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	KNTC1	NM_014708	exon23	c.1861_1867del	p.621_623del	AATCTATTTCAGA	.	65.0	16.0	99.0	0.0	.	543
LCORL	254251	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	17886148	17886148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	LCORL	NM_001166139	exon7	c.C1004T	p.S335L	TTATATGAATAAC	.	67.0	15.0	55.0	0.0	.	90
LRP1B	53353	broad.mit.edu;bcgsc.ca	37	2	141747101	141747101	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	LRP1B	NM_018557	exon17	c.G2770C	p.A924P	CTTTACCTGTGCA	.	77.0	31.0	42.0	1.0	.	311
LRRC4C	57689	ucsc.edu;bcgsc.ca	37	11	40136444	40136444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	LRRC4C	NM_001258419	exon7	c.G1399A	p.D467N	CCTCATCCTGAGA	.	338.0	98.0	171.0	2.0	.	521
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	10352333	10352333	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	MYH4	NM_017533	exon31	c.G4213T	p.E1405X	GTTCTTCTGCATC	.	75.0	24.0	55.0	0.0	.	102
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10304673	10304673	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	MYH8	NM_002472	exon24	c.C3027T	p.T1009T	ATCCAGGGTCTGC	.	111.0	51.0	80.0	0.0	.	101
MYOZ1	58529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	75391726	75391726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	MYOZ1	NM_021245	exon6	c.A862G	p.I288V	TGCCAATATCCAC	.	166.0	7.0	115.0	0.0	.	92
NCF4	4689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37271708	37271708	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	NCF4	NM_000631	exon8	c.G641C	p.G214A	TCCGGGGAGCCAC	.	41.0	20.0	36.0	0.0	.	91
OR10S1	219873	broad.mit.edu;bcgsc.ca	37	11	123847554	123847554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	OR10S1	NM_001004474	exon1	c.G845A	p.G282E	CCAGCTCCTGCCT	.	49.0	5.0	46.0	1.0	.	70
OR4C6	219432	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55433208	55433208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	OR4C6	NM_001004704	exon1	c.A566G	p.D189G	GCACGGACACCCA	.	123.0	40.0	67.0	1.0	.	70
OR5M3	219482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56237770	56237770	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	OR5M3	NM_001004742	exon1	c.T204C	p.D68D	CCACACATCAACA	.	435.0	67.0	247.0	0.0	.	70
PIK3CA	5290	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	178952100	178952100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	PIK3CA,NS,carcinoma,0	PIK3CA	NM_006218	exon21	c.C3155A	p.T1052K	GCTGGACAACAAA	.	71.0	30.0	102.0	2.0	.	27752
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160807872	160807872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	PLA2R1	NM_001195641	exon24	c.G3519T	p.W1173C	TCCAATCCAGTGG	.	200.0	86.0	182.0	0.0	.	93
PRDM13	59336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	100062539	100062539	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	PRDM13	NM_021620	exon4	c.T2028C	p.P676P	GGAGCCTGGGGAT	.	28.0	6.0	32.0	0.0	.	135
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	89717712	89717712	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	PTEN,leg,malignant_melanoma,0	PTEN	NM_000314	exon7	c.C737G	p.P246R	CTCAGCCGTTACC	.	139.0	110.0	193.0	0.0	.	17735
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48919320	48919321	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	RB1,retina,retinoblastoma,+1	RB1	NM_000321	exon4	c.485_486insA	p.F162fs	CACTCTTCAGCAA	.	32.0	26.0	40.0	0.0	.	3784
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	6257754	6257754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	RPL22	NM_000983	exon2	c.C75A	p.C25X	GTGGGTGCAATCA	.	57.0	36.0	42.0	0.0	.	650
RTEL1	51750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62324187	62324187	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	RTEL1	NM_032957	exon29	c.C2754T	p.D918D	GACGGACAGGGCC	.	86.0	44.0	65.0	0.0	.	44
SDK1	221935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	4014121	4014121	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SDK1	NM_152744	exon13	c.C1938T	p.S646S	CTACAGCTGCGAG	.	260.0	123.0	195.0	2.0	.	138
SENP2	59343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185332412	185332412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SENP2	NM_021627	exon11	c.G994C	p.G332R	CGCCTGGGCAGTG	.	225.0	91.0	150.0	0.0	.	658
SEPHS2	22928	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30456131	30456131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SEPHS2	.	.	.	.	TGTGTGCATTAAA	.	181.0	82.0	125.0	0.0	.	138
SHOX2	6474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	157820590	157820590	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SHOX2	NM_003030	exon3	c.G504C	p.R168R	ATTGGTCCGACTT	.	225.0	110.0	178.0	0.0	.	90
SLCO6A1	133482	ucsc.edu;bcgsc.ca	37	5	101795411	101795411	+	Missense_Mutation	SNP	C	C	T	rs140682140	byfrequency	TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SLCO6A1	NM_173488	exon5	c.G970A	p.V324I	ATGCAACGACAGC	.	309.0	116.0	242.0	1.0	C|0.994;T|0.006	96
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	22700061	22700070	+	Frame_Shift_Del	DEL	ATACATCAAC	ATACATCAAC	-	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	ATACATCAAC	ATACATCAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SPAG6	NM_012443	exon10	c.1416_1425del	p.472_475del	TCAAGAATACATC	.	60.0	17.0	76.0	0.0	.	153
SPAST	6683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32341263	32341263	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SPAST	NM_014946	exon7	c.T1080C	p.L360L	TATTCTTCCTTCT	.	54.0	21.0	68.0	0.0	.	153
SSH3	54961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67077629	67077629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	SSH3	NM_017857	exon13	c.C1502T	p.P501L	CTCTTCCGCCAGA	.	120.0	38.0	53.0	0.0	.	91
STEAP3	55240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120005536	120005536	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	STEAP3	NM_182915	exon4	c.A804T	p.T268T	CACCACACTGCCG	.	57.0	27.0	43.0	0.0	.	91
THAP3	90326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6688628	6688628	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	THAP3	NM_001195752	exon2	c.C144T	p.P48P	CAAGCCCAAGCAG	.	188.0	84.0	116.0	0.0	.	514
TLL2	7093	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	98144387	98144387	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	TLL2	NM_012465	exon16	c.C2151T	p.D717D	GGTGTTGTCGGAC	.	111.0	46.0	130.0	2.0	.	93
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175105078	175105078	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	TNN	NM_022093	exon16	c.3427+1G>C	.	GGCTTGGTATGAT	.	191.0	41.0	61.0	0.0	.	138
TSR3	115939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1400190	1400190	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	.	NM_001001410	exon4	c.G572C	p.G191A	CCCTTGCCCCATT	.	26.0	11.0	19.0	0.0	.	.
UNC13A	23025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17758169	17758169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	UNC13A	NM_001080421	exon16	c.C1949T	p.A650V	GTCACCGCGAAGA	.	106.0	59.0	77.0	0.0	.	25
VIT	5212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36982183	36982183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	VIT	NM_001177969	exon5	c.C395T	p.S132F	GAGAATCCTTTAT	.	244.0	87.0	202.0	0.0	.	92
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77618153	77618153	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ZFHX4	NM_024721	exon2	c.C1830T	p.G610G	ACCGGGCAGTGGC	.	110.0	60.0	92.0	0.0	.	98
ZNF385D	79750	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	21467010	21467010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ZNF385D	NM_024697	exon6	c.G826A	p.V276I	AGTTGACGTGCAC	.	215.0	69.0	173.0	1.0	.	156
ZSWIM4	65249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13936368	13936368	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	ZSWIM4	NM_023072	exon11	c.C1869T	p.D623D	AGGAGACCCCAAG	.	112.0	55.0	73.0	0.0	.	90
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10286294	10286295	+	Splice_Site	DNP	GC	GC	AA	novel		TCGA-DD-A4NE-01A-11D-A27I-10	TCGA-DD-A4NE-11A-11D-A27I-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	343fcbc2-f30c-4ffa-a0b3-f5bb21e5e70b	2f595b57-7cf4-4499-bec6-497a4e241e01	.	.	.	.	.	.	GGCAGGGCTGTCA	.	158.0	62.0	94.0	0.0	.	.