Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ACAT1 38 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 108010844 108010844 + Missense_Mutation SNP A A G novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . ACAT1 NM_000019 exon7 c.A632G p.Q211R ATGAACAGGACGC . 104.0 22.0 127.0 0.0 . 93 ARHGAP25 9938 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 69049534 69049534 + Silent SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . ARHGAP25 NM_001007231 exon10 c.C1263T p.D421D GGAGGACAGCAGC . 108.0 9.0 104.0 0.0 . 274 ARHGAP6 395 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 11162339 11162339 + Missense_Mutation SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . ARHGAP6 NM_006125 exon11 c.C1937T p.S646F GAAAAGGAAACTT . 71.0 15.0 99.0 1.0 . 227 CDK12 51755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 37619175 37619175 + Missense_Mutation SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . CDK12 NM_016507 exon1 c.C851T p.A284V CTTCGGCCTACCA . 114.0 15.0 105.0 0.0 . 1055 CELSR2 1952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 109794691 109794691 + Missense_Mutation SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . CELSR2 NM_001408 exon1 c.G1990A p.G664S AGTGGTGGTGGGC . 322.0 63.0 374.0 0.0 . 526 CHST13 166012 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 126255177 126255182 + In_Frame_Del DEL AGCTCT AGCTCT - novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 AGCTCT AGCTCT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . CHST13 NM_152889 exon2 c.161_166del p.54_56del TGCAGAAGCTCTA . 159.0 17.0 159.0 0.0 . 90 CSAD 51380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 53553482 53553482 + Silent SNP A A G novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . CSAD NM_015989 exon16 c.T1314C p.N438N ACACACATTGACA . 130.0 41.0 96.0 0.0 . 91 DCLK1 9201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 36428640 36428640 + Missense_Mutation SNP T T G novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . DCLK1 NM_004734 exon6 c.A1031C p.Q344P ACCCTCTGCTTCC . 144.0 30.0 124.0 0.0 . 826 DNHD1 144132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6588587 6588587 + Missense_Mutation SNP T T A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . DNHD1 NM_144666 exon36 c.T11848A p.S3950T AAAGCATCAGAGC . 142.0 25.0 132.0 0.0 . 24 DOPEY2 9980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 37618218 37618218 + Silent SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . DOPEY2 NM_005128 exon19 c.C3940T p.L1314L CTGGAGCTGCTCA . 117.0 28.0 101.0 0.0 . 91 DSC2 1824 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 18 28650775 28650775 + Nonsense_Mutation SNP T T A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . DSC2 NM_024422 exon14 c.A2167T p.K723X GTTGTTTAGACGT . 80.0 13.0 93.0 0.0 . 517 FOXD2 2306 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 47904363 47904363 + Missense_Mutation SNP G G C novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . FOXD2 NM_004474 exon1 c.G556C p.V186L TGCTTCGTCAAGA . 268.0 45.0 191.0 0.0 . 226 FOXRED2 80020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 36902221 36902221 + Missense_Mutation SNP C C G novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . FOXRED2 NM_001102371 exon2 c.G249C p.K83N GTACCGCTTGTTG . 119.0 33.0 95.0 0.0 . 92 G6PC2 57818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 169757874 169757874 + Silent SNP A A C novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . G6PC2 NM_021176 exon1 c.A33C p.I11I GCTCATAATTCAG . 94.0 21.0 80.0 0.0 . 91 GBAS 2631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 56049254 56049254 + Nonsense_Mutation SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . GBAS NM_001483 exon4 c.C367T p.Q123X CAGGACCAAGCTG . 184.0 64.0 144.0 0.0 . 514 GLDC 2731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 6558589 6558589 + Silent SNP C C A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . GLDC NM_000170 exon17 c.G2022T p.G674G GATATTCCCATAT . 132.0 25.0 137.0 0.0 . 92 GPR171 29909 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 150916346 150916346 + Silent SNP C C A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . GPR171 NM_013308 exon3 c.G828T p.S276S CAGGTTCGACACA . 173.0 22.0 158.0 1.0 . 90 GPX1 2876 broad.mit.edu;bcgsc.ca 37 3 49395482 49395482 + Missense_Mutation SNP G G C rs75404373 byfrequency TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . GPX1 . . . . TTGCACGGGAAGC . 19.0 7.0 21.0 0.0 G|0.333;C|0.667 68 GSE1 23199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 85697087 85697087 + Silent SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . . NM_014615 exon11 c.G2511A p.Q837Q GCGGCAGACGCCT . 107.0 26.0 112.0 0.0 . . GSTP1 2950 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 67352223 67352223 + Missense_Mutation SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . GSTP1 NM_000852 exon4 c.G212A p.R71H TCCTGCGTCACCT . 533.0 26.0 115.0 0.0 . 91 HMBS 3145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 118955777 118955777 + Splice_Site SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . HMBS NM_000190 exon1 c.33+1G>A . ACGGCGGTGAGTG . 110.0 31.0 135.0 0.0 . 90 KIAA0586 9786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 58965663 58965663 + Missense_Mutation SNP T T G novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . KIAA0586 NM_001244189 exon29 c.T4312G p.F1438V CGGCAATTTGACA . 148.0 49.0 107.0 0.0 . 23 KIAA1024 23251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 79748973 79748973 + Missense_Mutation SNP G G T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . KIAA1024 NM_015206 exon2 c.G484T p.D162Y AAGATGGACTGCA . 66.0 14.0 85.0 0.0 . 183 KRT27 342574 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38935981 38935981 + Missense_Mutation SNP T T A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . KRT27 NM_181537 exon4 c.A817T p.R273W CGTCCCTGCGGTT . 80.0 17.0 82.0 0.0 . 90 LMO7 4008 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 76382095 76382095 + Missense_Mutation SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . LMO7 NM_015842 exon7 c.G977A p.C326Y TTCTCTGTGTACT . 52.0 8.0 56.0 0.0 . 586 LPIN2 9663 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 2939526 2939526 + Silent SNP T T C novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . LPIN2 NM_014646 exon6 c.A774G p.S258S AGACTCTGATCTG . 59.0 15.0 58.0 0.0 . 227 LRRK2 120892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 40707956 40707956 + Silent SNP T T G novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . LRRK2 NM_198578 exon32 c.T4719G p.V1573V CGCAGTTCACTTT . 197.0 50.0 148.0 0.0 . 533 LRSAM1 90678 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 130242224 130242224 + Missense_Mutation SNP G G T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . LRSAM1 NM_001005373 exon14 c.G1010T p.S337I TTTCCAGCCGGAT . 174.0 34.0 176.0 1.0 . 90 LTN1 26046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 30343736 30343736 + Missense_Mutation SNP C C A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . LTN1 NM_015565 exon7 c.G979T p.A327S ACAATGCAGAGAC . 113.0 28.0 126.0 0.0 . 530 MAGI2 9863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 77885584 77885584 + Missense_Mutation SNP C C A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . MAGI2 NM_012301 exon10 c.G1723T p.D575Y GACCATCAGTTGG . 479.0 161.0 391.0 0.0 . 461 MAN2A2 4122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 91461902 91461902 + Missense_Mutation SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . MAN2A2 NM_006122 exon21 c.G3217A p.A1073T GAGACCGCACTCA . 54.0 10.0 48.0 0.0 . 136 MAP7D3 79649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 135309506 135309506 + Silent SNP T T C novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . MAP7D3 NM_024597 exon12 c.A1971G p.Q657Q ATTTTGTTGCTGC . 283.0 46.0 251.0 0.0 . 110 MYO1H 283446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 109879426 109879426 + Nonsense_Mutation SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . . NM_001101421 exon25 c.C2497T p.Q833X ATGCAGCAAAAGG . 270.0 41.0 207.0 0.0 . . MYO6 4646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 76589582 76589582 + Missense_Mutation SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . MYO6 NM_004999 exon21 c.G2123A p.R708Q CATCACGAGCTTC . 240.0 39.0 210.0 0.0 . 92 NASP 4678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 46073649 46073649 + Missense_Mutation SNP G G T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . NASP NM_002482 exon6 c.G1066T p.A356S GCCTCAGCTGTAG . 339.0 57.0 339.0 0.0 . 91 NEB 4703 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 152506778 152506778 + Missense_Mutation SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . NEB NM_004543 exon54 c.G7343A p.R2448H GGCTGACGATATT . 215.0 31.0 255.0 1.0 . 145 NPY5R 4889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 164271585 164271585 + Missense_Mutation SNP C C A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . NPY5R NM_006174 exon4 c.C160A p.L54I AGTCTTCTTGGCT . 196.0 33.0 165.0 0.0 . 523 NUMB 8650 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 73746111 73746111 + Missense_Mutation SNP A A C novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . NUMB NM_001005743 exon12 c.T1118G p.F373C ACATGGAAGGCTG . 218.0 33.0 160.0 0.0 . 1062 OR6N2 81442 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158747373 158747373 + Missense_Mutation SNP G G A rs200003269 TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . OR6N2 NM_001005278 exon1 c.C53T p.A18V ACACTGGCAAAGC . 282.0 54.0 322.0 1.0 G|0.999;A|0.001 68 OR7A10 390892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 14952139 14952139 + Missense_Mutation SNP A A G novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . OR7A10 NM_001005190 exon1 c.T551C p.V184A TGGACCACCTGAT . 189.0 20.0 169.0 0.0 . 68 OR7A5 26659 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 14938783 14938783 + Missense_Mutation SNP C C A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . OR7A5 NM_017506 exon1 c.G271T p.V91F TGATGACTTTGTT . 171.0 8.0 125.0 0.0 . 90 OR8H1 219469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 56058048 56058048 + Missense_Mutation SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . OR8H1 NM_001005199 exon1 c.G491A p.R164K TGCAGTCTGCTCA . 254.0 51.0 158.0 0.0 . 71 P2RY4 5030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 69478612 69478612 + Missense_Mutation SNP T T C novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . P2RY4 NM_002565 exon1 c.A863G p.Y288C ACTTTATAGACCA . 431.0 95.0 474.0 0.0 . 540 PAPD7 11044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 6754921 6754921 + Missense_Mutation SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . PAPD7 NM_006999 exon13 c.G1492A p.G498S GGCGGCGGCTACA . 268.0 51.0 210.0 0.0 . 69 PARP11 57097 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 3939151 3939151 + Missense_Mutation SNP T T C novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . PARP11 NM_020367 exon2 c.A52G p.K18E TTGTTTTAGAAAA . 107.0 19.0 123.0 0.0 . 523 PCDH10 57575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 134072907 134072907 + Missense_Mutation SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . PCDH10 NM_032961 exon1 c.G1612A p.D538N CTGAAGGACTTCA . 194.0 44.0 193.0 0.0 . 92 PCDHGA6 56109 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 140755726 140755726 + Silent SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . PCDHGA6 NM_018919 exon1 c.C2076T p.Y692Y TCTGTACCTGGTG . 85.0 21.0 73.0 0.0 . 67 RALGAPA2 57186 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 20621445 20621445 + Silent SNP C C A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . RALGAPA2 NM_020343 exon6 c.G450T p.L150L AAAAATCAGAACC . 284.0 43.0 222.0 1.0 . 24 RBM11 54033 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 15599354 15599354 + Missense_Mutation SNP G G T rs139439630 byfrequency;alternate_allele TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . . NM_144770 exon5 c.G586T p.D196Y CCAAGTGACTCTG . 434.0 89.0 406.0 0.0 G|0.988;A|0.012 . RGS12 6002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 3318591 3318591 + Missense_Mutation SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . RGS12 NM_002926 exon2 c.G694A p.V232M ATGATCGTGGGCT . 199.0 39.0 167.0 0.0 . 226 RNF113A 7737 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 119005302 119005302 + Missense_Mutation SNP T T A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . RNF113A NM_006978 exon1 c.A275T p.E92V TCGGGCTCATTTT . 167.0 10.0 178.0 0.0 . 129 SACS 26278 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 23912521 23912521 + Missense_Mutation SNP A A T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . SACS NM_014363 exon10 c.T5494A p.F1832I GGGAAAACTTCAG . 89.0 8.0 91.0 0.0 . 298 SEMA4A 64218 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156146462 156146462 + Missense_Mutation SNP G G C novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . SEMA4A NM_001193300 exon15 c.G1960C p.A654P GAACTGGCAGGCA . 143.0 34.0 151.0 0.0 . 228 SPRR2E 6704 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 153066128 153066128 + Missense_Mutation SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . SPRR2E NM_001024209 exon2 c.G100A p.E34K AGGGCTCAGGGCA . 184.0 44.0 179.0 1.0 . 69 SYP 6855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 49049852 49049852 + Silent SNP C C A rs140804164 alternate_allele TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . SYP NM_003179 exon5 c.G492T p.L164L ATCTGACAGCCCC . 271.0 43.0 298.0 0.0 C|1.000;T|0.000 556 TGS1 96764 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 56699053 56699053 + Frame_Shift_Del DEL A A - novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . TGS1 NM_024831 exon4 c.596delA p.E199fs AATGGGAAAAGTA . 95.0 39.0 83.0 0.0 . 227 TRPC1 7220 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 142499740 142499740 + Missense_Mutation SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . TRPC1 NM_001251845 exon6 c.C829T p.R277W CAAGCCCGGAATT . 83.0 4.0 106.0 0.0 . 92 TSPEAR 54084 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 45929169 45929169 + Missense_Mutation SNP T T G novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . TSPEAR NM_144991 exon10 c.A1667C p.N556T GAATCATTCTGGA . 225.0 42.0 268.0 2.0 . 244 TTC28 23331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 28378887 28378887 + Missense_Mutation SNP C C G novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . . NM_001145418 exon23 c.G6768C p.E2256D GGACATCTCTGAG . 185.0 66.0 141.0 0.0 . . UNC45B 146862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33486549 33486549 + Missense_Mutation SNP T T A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . UNC45B NM_001267052 exon8 c.T964A p.Y322N ACCATCTATGTGG . 76.0 16.0 71.0 0.0 . 157 USP6 9098 hgsc.bcm.edu;ucsc.edu 37 17 5042895 5042895 + Nonsense_Mutation SNP G G A novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . USP6 NM_004505 exon14 c.G1424A p.W475X TTGAATGGAGCTG . 46.0 8.0 29.0 0.0 . 662 UTP15 84135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 72874667 72874667 + Missense_Mutation SNP G G T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . UTP15 NM_032175 exon10 c.G1136T p.R379I TCGATAGAGTTCT . 151.0 47.0 116.0 0.0 . 90 WAS 7454 broad.mit.edu;mdanderson.org 37 X 48547190 48547190 + Missense_Mutation SNP G G T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . WAS NM_000377 exon10 c.G1073T p.G358V CCCGGGGACCCCC . 19.0 5.0 17.0 0.0 . 563 ZC3H7B 23264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 41752683 41752683 + Missense_Mutation SNP G G C novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . ZC3H7B NM_017590 exon22 c.G2552C p.S851T AGAACAGCAACAG . 117.0 10.0 93.0 0.0 . 90 ZFHX3 463 hgsc.bcm.edu;broad.mit.edu 37 16 72993867 72993867 + Missense_Mutation SNP G G A rs200390317 TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . ZFHX3 NM_006885 exon2 c.C178T p.R60C CGAGGCGCTCATT . 28.0 9.0 21.0 0.0 G|0.999;A|0.000 72 ZNF217 7764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 52198139 52198139 + Silent SNP G G C novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . ZNF217 NM_006526 exon1 c.C1227G p.T409T AGACATGGTGGGC . 76.0 10.0 58.0 0.0 . 723 ZNF410 57862 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 74364881 74364881 + Missense_Mutation SNP C C T novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . ZNF410 NM_001242924 exon6 c.C547T p.L183F TGGTTCCTCCGGG . 198.0 65.0 130.0 2.0 . 91 ZNF99 7652 broad.mit.edu;ucsc.edu 37 19 22940429 22940429 + Missense_Mutation SNP C C G novel TCGA-DD-A4ND-01A-11D-A25V-10 TCGA-DD-A4ND-11A-11D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d9c5493e-f969-4c04-a646-9a3134011021 40381948-7dff-4254-8b81-bb6f34579ebf . ZNF99 NM_001080409 exon4 c.G2282C p.C761S CATTTGCAGGGTT . 15.0 4.0 13.0 0.0 . 24