Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ADAMTSL4 54507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150532541 150532541 + Missense_Mutation SNP C C A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ADAMTSL4 NM_019032 exon19 c.C3094A p.Q1032K GATGATCAATGCA . 188.0 46.0 184.0 0.0 . 92 AFF1 4299 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 88012960 88012963 + Frame_Shift_Del DEL AGTT AGTT - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 AGTT AGTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . AFF1 NM_001166693 exon7 c.1207_1210del p.403_404del CATGTCAGTTCTG . 114.0 18.0 124.0 0.0 . 289 BAG6 7917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 31610883 31610883 + Missense_Mutation SNP G G A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . BAG6 NM_004639 exon14 c.C1676T p.T559I CCTGGGGTCCCCT . 12.0 5.0 14.0 0.0 . 154 CASP8 841 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 202131436 202131437 + Frame_Shift_Ins INS - - AG novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . CASP8 NM_001080125 exon2 c.404_405insAG p.I135fs TGCTGATTACCTA . 154.0 29.0 150.0 0.0 . 660 CPS1 1373 hgsc.bcm.edu;broad.mit.edu 37 2 211507320 211507322 + In_Frame_Del DEL TGA TGA - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 TGA TGA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . CPS1 NM_001122633 exon26 c.3090_3092del p.1030_1031del AGACTTTGATGAG . 303.0 24.0 384.0 0.0 . 162 FEZF2 55079 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 62356899 62356899 + Missense_Mutation SNP G G T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . FEZF2 NM_018008 exon4 c.C1113A p.H371Q TTTTTGGTGAAAG . 130.0 16.0 177.0 2.0 . 278 FOCAD 54914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 20740268 20740268 + Silent SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . . NM_017794 exon7 c.C321T p.H107H TATGCACTTACTA . 226.0 53.0 232.0 0.0 . . FPGS 2356 broad.mit.edu;ucsc.edu 37 9 130569921 130569921 + Missense_Mutation SNP G G T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . FPGS NM_004957 exon8 c.G698T p.G233V TCCTGGGGGATAC . 70.0 5.0 100.0 1.0 . 90 HIST1H2AG 8969 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 27100892 27100892 + Silent SNP G G A rs201354380 TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . HIST1H2AG NM_021064 exon1 c.G42A p.K14K CGCTAAGGCCAAG . 74.0 7.0 99.0 0.0 G|0.999;A|0.001 68 ITGA1 3672 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 52193327 52193327 + Missense_Mutation SNP T T C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ITGA1 NM_181501 exon10 c.T1132C p.S378P GAAATGTCTCAGA . 90.0 15.0 94.0 0.0 . 228 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25380255 25380255 + Missense_Mutation SNP C C A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b KRAS,NS,carcinoma,+1 KRAS NM_004985 exon3 c.G203T p.R68M TGGTCCCTCATTG . 149.0 32.0 144.0 0.0 . 92875 MAP3K10 4294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 40698304 40698304 + Silent SNP G G A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . MAP3K10 NM_002446 exon1 c.G366A p.V122V GGAGGTGGCAGTC . 31.0 14.0 38.0 0.0 . 981 MGAT4B 11282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 179226059 179226059 + Silent SNP G G A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . MGAT4B NM_054013 exon10 c.C1257T p.S419S GCTCGTGCTCACC . 367.0 42.0 348.0 0.0 . 90 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 1263483 1263484 + Frame_Shift_Del DEL AG AG - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . . NM_002458 exon31 c.5373_5374del p.1791_1792del GTGGACAGAGTGG . 235.0 42.0 292.0 0.0 . . MYH15 22989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 108203986 108203986 + Missense_Mutation SNP A A G novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . MYH15 NM_014981 exon12 c.T1126C p.F376L GTTTAAATTTCAT . 150.0 38.0 173.0 0.0 . 73 MYT1L 23040 broad.mit.edu;bcgsc.ca 37 2 1915796 1915796 + Missense_Mutation SNP G G C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . MYT1L NM_015025 exon12 c.C1699G p.R567G ACCTTCGGTGGGA . 101.0 7.0 135.0 1.0 . 95 NEUROD1 4760 hgsc.bcm.edu;bcgsc.ca 37 2 182542873 182542885 + Frame_Shift_Del DEL CATGGGAGCTGTC CATGGGAGCTGTC - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 CATGGGAGCTGTC CATGGGAGCTGTC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . NEUROD1 NM_002500 exon2 c.703_715del p.235_239del GGAAGACATGGGA . 100.0 10.0 142.0 0.0 . 91 PAX5 5079 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 37002701 37002701 + Missense_Mutation SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . PAX5 NM_016734 exon5 c.G548A p.G183D AGGATGCCGCTGA . 132.0 6.0 182.0 0.0 . 1851 PIGQ 9091 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 633549 633549 + Frame_Shift_Del DEL C C - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . PIGQ NM_148920 exon10 c.2198delC p.T733fs CGCTGACCCCCGT . 112.0 19.0 93.0 0.0 . 226 PLEKHG4B 153478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 161903 161903 + Silent SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . PLEKHG4B NM_052909 exon10 c.C1425T p.S475S GCAATCCTGCCAG . 111.0 16.0 129.0 0.0 . 228 PTPRM 5797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 7888162 7888162 + Silent SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . PTPRM NM_001105244 exon3 c.C255T p.L85L CCTGCTCTTACCC . 147.0 37.0 186.0 0.0 . 228 RNU6-71 100873774 ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56510699 56510699 + RNA SNP T T C rs80241715 byfrequency;by1000genomes TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . . . . . . TCTCTCTAGCATG . 264.0 48.0 294.0 0.0 T|0.993;C|0.007 . SAMD9 54809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 92734353 92734353 + Missense_Mutation SNP G G A rs138478808 byfrequency TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . SAMD9 NM_001193307 exon2 c.C1058T p.T353M TTTTTCGTAATGT . 69.0 13.0 98.0 0.0 G|0.999;A|0.001 140 SCN3A 6328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 165946841 165946841 + Missense_Mutation SNP T T C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . SCN3A NM_006922 exon28 c.A5822G p.K1941R TCTTGTTTTATAG . 335.0 84.0 271.0 0.0 . 141 SLC35F3 148641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 234041461 234041461 + Silent SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . SLC35F3 NM_173508 exon2 c.C240T p.I80I GCGCATCACTGGC . 292.0 75.0 230.0 0.0 . 92 SYT16 83851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 62547559 62547559 + Missense_Mutation SNP A A G novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . SYT16 NM_031914 exon4 c.A1001G p.D334G AACAGGACAGGAC . 159.0 39.0 214.0 0.0 . 23 UGT1A3 54659 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 234638003 234638003 + Silent SNP G G T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . UGT1A3 NM_019093 exon1 c.G231T p.L77L CACCCTGACAACC . 225.0 46.0 214.0 1.0 . 24 UNC79 57578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 94038399 94038399 + Missense_Mutation SNP A A T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . . NM_020818 exon15 c.A1384T p.N462Y CCAGATAATCAGT . 42.0 15.0 62.0 0.0 . . ZNF426 79088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9643591 9643591 + Missense_Mutation SNP G G C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ZNF426 NM_024106 exon6 c.C255G p.I85M TTTGATGATCTGA . 97.0 20.0 96.0 0.0 . 91 ZNF585A 199704 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 37643714 37643714 + Missense_Mutation SNP A A C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ZNF585A NM_199126 exon6 c.T922G p.F308V AGGTAAAGGCCTT . 207.0 45.0 180.0 0.0 . 92 ZNF83 55769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 53117500 53117500 + Silent SNP T T C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ZNF83 NM_018300 exon3 c.A318G p.L106L AAAATGTAAGCCT . 232.0 31.0 219.0 0.0 . 91 ZNF841 284371 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 52569235 52569235 + Missense_Mutation SNP A A T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . . NM_001136499 exon7 c.T1900A p.F634I AACTGAAGACCTT . 220.0 20.0 199.0 0.0 . .