Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ADAM33 80332 ucsc.edu;bcgsc.ca 37 20 3655233 3655233 + Missense_Mutation SNP A A G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ADAM33 NM_025220 exon6 c.T518C p.L173P CAGGTGAGCAGCT . 47.0 5.0 32.0 0.0 . 291 ARHGAP18 93663 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 129927037 129927037 + Silent SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ARHGAP18 NM_033515 exon10 c.C1350T p.N450N GTCCCTGTTTGCA . 89.0 65.0 68.0 0.0 . 230 ARID1A 8289 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 27106893 27106894 + Frame_Shift_Ins INS - - T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ARID1A NM_006015 exon20 c.6504_6505insT p.V2168fs GGCTGTGGTACTG . 73.0 16.0 49.0 0.0 . 584 ARID1A 8289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 27105550 27105550 + Nonsense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 ARID1A,NS,carcinoma,0 ARID1A NM_006015 exon20 c.C5161T p.R1721X TATTTCCGACGAT . 234.0 117.0 122.0 0.0 . 584 ASAH2 56624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 52008360 52008360 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ASAH2 NM_001143974 exon1 c.G11A p.R4H AAGGTGCGTTTGG . 104.0 37.0 65.0 0.0 . 90 AXIN1 8312 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 347071 347072 + Frame_Shift_Ins INS - - G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . AXIN1 NM_003502 exon7 c.1940_1941insC p.R647fs GTCCTGCGGTGCC . 66.0 49.0 36.0 0.0 . 684 BRD7 29117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 16 50357576 50357576 + Nonsense_Mutation SNP A A C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . BRD7 NM_013263 exon12 c.T1365G p.Y455X ATACGGATAATCT . 68.0 46.0 55.0 0.0 . 90 C11orf16 56673 broad.mit.edu;bcgsc.ca 37 11 8947522 8947522 + Missense_Mutation SNP C C T rs148052847 TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . C11orf16 NM_020643 exon5 c.G692A p.R231K TGCTCCCTGGTGA . 80.0 5.0 43.0 0.0 C|1.000;T|0.000 92 C11orf74 119710 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 36669639 36669642 + Frame_Shift_Del DEL CCAG CCAG - novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 CCAG CCAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . C11orf74 NM_138787 exon5 c.432_435del p.144_145del TGTGGCCCAGCCT . 75.0 14.0 35.0 0.0 . 68 C11orf74 119710 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 36669648 36669649 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . C11orf74 NM_138787 exon5 c.441_442insC p.D147fs GCCTCCTACCTGT . 65.0 18.0 30.0 0.0 . 68 COL12A1 1303 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 75893307 75893307 + Missense_Mutation SNP G G T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . COL12A1 NM_004370 exon10 c.C1350A p.S450R CCCAATGCTATAG . 94.0 58.0 88.0 1.0 . 142 COL25A1 84570 ucsc.edu;bcgsc.ca 37 4 109740482 109740482 + Missense_Mutation SNP A A G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . COL25A1 NM_198721 exon35 c.T1849C p.F617L CACGGAATCCCTG . 24.0 4.0 20.0 0.0 . 92 DCSTAMP 81501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 105361088 105361088 + Missense_Mutation SNP C C A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . . NM_001257317 exon2 c.C308A p.T103K CTGGCACAGGGAT . 222.0 89.0 90.0 0.0 . . EIF4G2 1982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 10821282 10821282 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . EIF4G2 NM_001172705 exon19 c.G2141A p.R714H AACATGCGGTCCT . 112.0 18.0 55.0 0.0 . 91 EPN3 55040 hgsc.bcm.edu;ucsc.edu 37 17 48614425 48614425 + Missense_Mutation SNP C C T rs146173668 TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . EPN3 NM_017957 exon2 c.C508T p.R170C TTCAGCCGCCGCT . 44.0 19.0 14.0 0.0 C|1.000;T|0.000 91 FAM186A 121006 ucsc.edu;bcgsc.ca 37 12 50745924 50745924 + Missense_Mutation SNP T T C rs34283706 TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . FAM186A NM_001145475 exon4 c.A4691G p.E1564G GGGATCTCCAATT . 157.0 27.0 46.0 0.0 . 68 FBN2 2201 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 127681089 127681089 + Silent SNP A A T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . FBN2 NM_001999 exon24 c.T3177A p.A1059A TCGGTTAGCAAAG . 93.0 26.0 45.0 0.0 . 146 GMEB2 26205 broad.mit.edu;bcgsc.ca 37 20 62221645 62221645 + Missense_Mutation SNP C C G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . GMEB2 NM_012384 exon10 c.G1390C p.D464H TACCGTCCTGCAC . 99.0 6.0 41.0 0.0 . 90 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 12125147 12125148 + Frame_Shift_Ins INS - - A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . HIVEP1 NM_002114 exon4 c.5119_5120insA p.E1707fs CTATGTGAAAATG . 246.0 43.0 63.0 0.0 . 139 IL18RAP 8807 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 103068506 103068506 + Missense_Mutation SNP G G T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . IL18RAP NM_003853 exon12 c.G1665T p.M555I CAAAATGCGCTAC . 152.0 61.0 67.0 0.0 . 95 INHBA 3624 bcgsc.ca;mdanderson.org 37 7 41729607 41729607 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . INHBA NM_002192 exon3 c.C922T p.R308C GCCGACGCCGGCG . 65.0 38.0 32.0 1.0 . 703 IQCA1 79781 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 237300683 237300683 + Frame_Shift_Del DEL T T - novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . IQCA1 NM_001270585 exon11 c.1370delA p.N457fs TTTAAGTTTTTAA . 344.0 149.0 114.0 0.0 . 23 IRF2 3660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 4 185320192 185320192 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . IRF2 NM_002199 exon7 c.G571T p.E191X CAATCTCTTGATT . 104.0 88.0 73.0 0.0 . 91 ITGB3 3690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 45387555 45387555 + Silent SNP G G C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ITGB3 NM_000212 exon15 c.G2352C p.T784T TATCACGTACCGG . 237.0 100.0 76.0 0.0 . 714 LCE1B 353132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152785040 152785040 + Missense_Mutation SNP G G T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . LCE1B NM_178349 exon1 c.G118T p.V40F CCTCCAGTCTCTT . 839.0 180.0 100.0 0.0 . 68 MAPK4 5596 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 18 48190630 48190630 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . MAPK4 NM_002747 exon2 c.C302T p.A101V GCGTGGCGTACAT . 36.0 14.0 15.0 0.0 . 1404 MYO7A 4647 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 76917166 76917166 + Silent SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . MYO7A NM_000260 exon41 c.G5661A p.P1887P CCCTCCGCACCTG . 84.0 32.0 37.0 0.0 . 138 NCAPD3 23310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 134029862 134029862 + Silent SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . NCAPD3 NM_015261 exon29 c.C3792T p.V1264V CTCCTGGACCAGC . 117.0 60.0 43.0 0.0 . 229 NFIA 4774 broad.mit.edu;bcgsc.ca 37 1 61920983 61920983 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . NFIA NM_005595 exon10 c.C1429T p.P477S CTGGTACCTGGGA . 120.0 8.0 77.0 0.0 . 92 NOL11 25926 ucsc.edu;bcgsc.ca 37 17 65720207 65720207 + Missense_Mutation SNP A A G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . NOL11 NM_015462 exon6 c.A562G p.I188V TCACGTATCTTAA . 43.0 4.0 29.0 0.0 . 90 NXF1 10482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 62566040 62566040 + Missense_Mutation SNP G G C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . NXF1 NM_006362 exon11 c.C1024G p.R342G GTTCGCGAATGGC . 99.0 49.0 49.0 0.0 . 228 OCSTAMP 128506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 45174216 45174216 + Missense_Mutation SNP C C T rs76943342 TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . . NM_080721 exon2 c.G797A p.R266Q GCCAACCGCTGGG . 89.0 25.0 36.0 0.0 C|0.997;T|0.003 . OR2M3 127062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248366773 248366773 + Missense_Mutation SNP T T C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . OR2M3 NM_001004689 exon1 c.T404C p.L135P CCAATCTCATGAG . 911.0 202.0 147.0 0.0 . 70 OR4N3P 390539 bcgsc.ca;mdanderson.org 37 15 22413859 22413859 + RNA SNP C C G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . . . . . . AGTATTCAACTGT . 1233.0 233.0 175.0 0.0 . . OR6B1 135946 ucsc.edu;bcgsc.ca 37 7 143701970 143701970 + Missense_Mutation SNP A A G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . OR6B1 NM_001005281 exon1 c.A881G p.E294G ACCGAGAGGTCAA . 68.0 6.0 38.0 0.0 . 91 OR8U1 219417 ucsc.edu;bcgsc.ca 37 11 56143699 56143699 + Missense_Mutation SNP T T G rs4990121 bycluster;byfrequency TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . OR8U1 NM_001005204 exon1 c.T600G p.F200L GATCTTTGCCTGT . 910.0 98.0 164.0 2.0 T|0.500;G|0.500 72 PACS2 23241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105858084 105858084 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . PACS2 NM_001100913 exon22 c.G2236A p.G746R GTGAGCGGAGGCC . 80.0 28.0 19.0 0.0 . 69 PLA2R1 22925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 160833216 160833216 + Missense_Mutation SNP A A G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . PLA2R1 NM_001195641 exon16 c.T2417C p.I806T AACGGAATCTTGG . 250.0 115.0 121.0 0.0 . 93 PSMC5 5705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 61908431 61908431 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . PSMC5 NM_002805 exon8 c.C715T p.R239W ATGGCACGGGAAC . 118.0 34.0 51.0 0.0 . 178 RBM27 54439 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 145641135 145641135 + Silent SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . RBM27 NM_018989 exon13 c.G1956A p.R652R GGCCAGGAAAGCC . 236.0 83.0 95.0 1.0 . 70 ROBO4 54538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 124763622 124763622 + Silent SNP C C A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ROBO4 NM_019055 exon10 c.G1509T p.L503L TCTGTACAGACCT . 283.0 106.0 93.0 0.0 . 92 RPS6KA3 6197 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 20252926 20252926 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . RPS6KA3 NM_004586 exon2 c.C76T p.Q26X TTTGCTGTCCATT . 243.0 204.0 108.0 0.0 . 1504 RTL1 388015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 101348750 101348750 + Silent SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . RTL1 NM_001134888 exon1 c.C2376T p.N792N CATGACGTTCTTG . 159.0 69.0 56.0 0.0 . 46 SI 6476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 164750329 164750329 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . SI NM_001041 exon24 c.C2717T p.T906I TCATAAGTGAAAT . 96.0 35.0 49.0 0.0 . 104 SLC26A4 5172 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 107315471 107315471 + Missense_Mutation SNP G G T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . SLC26A4 NM_000441 exon6 c.G682T p.A228S GCTGCTGCCTTCC . 310.0 23.0 108.0 0.0 . 96 SPATA3 130560 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 231865207 231865207 + Missense_Mutation SNP A A T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . . NM_139073 exon2 c.A428T p.Q143L ACTGGCAGATGGC . 133.0 53.0 62.0 0.0 . . STON2 85439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 81744756 81744756 + Missense_Mutation SNP G G A rs201611443 TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . STON2 NM_001256430 exon6 c.C899T p.T300M GAAGGCGTGCGGT . 118.0 15.0 61.0 0.0 . 95 SZT2 23334 ucsc.edu;bcgsc.ca 37 1 43893354 43893354 + Missense_Mutation SNP A A G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . SZT2 NM_015284 exon25 c.A3581G p.E1194G TGAGGGAACAAAT . 31.0 4.0 27.0 0.0 . 144 TJP1 7082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 30012108 30012108 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . TJP1 NM_003257 exon20 c.C2876T p.P959L GGGGTGGGCTCCT . 268.0 119.0 93.0 0.0 . 95 TNS1 7145 hgsc.bcm.edu;ucsc.edu 37 2 218696257 218696257 + Silent SNP C C T rs146820371 TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . TNS1 NM_022648 exon20 c.G2919A p.P973P CAGACCCGGGGGG . 35.0 18.0 16.0 0.0 C|1.000;T|0.000 156 TOM1L1 10040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 52991114 52991114 + Missense_Mutation SNP G G C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . TOM1L1 NM_005486 exon5 c.G378C p.W126C GACTTGGTCACAG . 146.0 69.0 69.0 0.0 . 91 TPD52L1 7164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 125584076 125584076 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . TPD52L1 NM_003287 exon7 c.C583T p.R195W GGCTCCCGGCGGA . 18.0 10.0 16.0 0.0 . 90 TRPM6 140803 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 77339554 77339554 + Missense_Mutation SNP G G T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . TRPM6 NM_017662 exon39 c.C6044A p.S2015Y TCTGGGGAATTTC . 265.0 98.0 107.0 1.0 . 335 UBE2J1 51465 ucsc.edu;bcgsc.ca 37 6 90053415 90053415 + Missense_Mutation SNP G G T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . UBE2J1 NM_016021 exon2 c.C92A p.A31E GGCTGCGCATGGT . 38.0 4.0 38.0 0.0 . 226 VCAN 1462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 82833574 82833574 + Silent SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . VCAN NM_004385 exon8 c.C4752T p.P1584P CACTCCCACTATA . 119.0 30.0 77.0 0.0 . 238 VPS13A 23230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 79867172 79867172 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . VPS13A NM_001018038 exon22 c.G2192A p.R731Q AAGCACGAAAACT . 139.0 64.0 61.0 0.0 . 161 ZBTB1 22890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 64989700 64989700 + Missense_Mutation SNP A A G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ZBTB1 NM_014950 exon2 c.A1478G p.N493S AAGAGAATCCTGA . 98.0 44.0 50.0 0.0 . 91 ZDHHC22 283576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 77606003 77606003 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . . NM_174976 exon2 c.C79T p.L27F GGAAGAGCTGCAG . 57.0 20.0 26.0 0.0 . . ZNF107 51427 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 64167564 64167564 + Silent SNP T T C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ZNF107 NM_016220 exon7 c.T882C p.H294H AATTCATACTGGA . 81.0 40.0 43.0 0.0 . 69