Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ALAD	210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116152930	116152930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ALAD	NM_000031	exon6	c.C424T	p.R142W	CAGCCCGGAATGC	.	15.0	9.0	37.0	0.0	.	90
APOBEC4	403314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183617170	183617170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	APOBEC4	NM_203454	exon2	c.T747A	p.N249K	GTTTGGATTCCTT	.	688.0	180.0	731.0	0.0	.	90
ASIC1	41	broad.mit.edu;bcgsc.ca	37	12	50452876	50452876	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_020039	exon2	c.T327C	p.Y109Y	CCTGTATCATGCT	.	58.0	4.0	154.0	0.0	.	.
ATP13A3	79572	broad.mit.edu;bcgsc.ca	37	3	194180577	194180577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ATP13A3	NM_024524	exon4	c.A349G	p.N117D	TGGGATTCTCAAT	.	98.0	6.0	201.0	0.0	.	69
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	348180	348180	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	AXIN1	NM_181050	exon6	c.1326delC	p.P442fs	CCAAGCGGGGGCG	.	12.0	10.0	53.0	0.0	.	684
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15350762	15350762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	BRD4	NM_058243	exon15	c.C3241T	p.H1081Y	ACTGGTGGGTCAG	.	96.0	43.0	199.0	0.0	.	767
C11orf24	53838	ucsc.edu;bcgsc.ca	37	11	68031184	68031184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C11orf24	NM_022338	exon3	c.A52G	p.S18G	CATGGCTTTCAGA	.	32.0	4.0	77.0	0.0	.	90
C1orf226	400793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162353415	162353415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C1orf226	NM_001135240	exon3	c.C890T	p.A297V	CTCAGGCACGGAC	.	42.0	14.0	36.0	0.0	.	1
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6682236	6682236	+	Missense_Mutation	SNP	G	G	C	rs148227405	alternate_allele	TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C3	NM_000064	exon34	c.C4177G	p.R1393G	CTCCCCGGTACCT	.	55.0	20.0	148.0	0.0	G|1.000;A|0.000	95
C6	729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41201723	41201723	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C6	NM_001115131	exon3	c.C237T	p.P79P	GTTGATGGGGCAT	.	183.0	79.0	343.0	0.0	.	95
CCDC105	126402	ucsc.edu;bcgsc.ca	37	19	15122125	15122125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CCDC105	NM_173482	exon1	c.A488G	p.H163R	CCGACCACAGGCT	.	43.0	4.0	41.0	1.0	.	91
CCDC40	55036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78011929	78011929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CCDC40	NM_017950	exon2	c.C37T	p.P13S	TCCCATCCGGAAG	.	73.0	35.0	107.0	0.0	.	71
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	80971304	80971304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CEP128	NM_152446	exon23	c.G3132T	p.W1044C	ATCCTGCCAAGAG	.	23.0	7.0	68.0	0.0	.	91
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57738828	57738828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CLTC	NM_004859	exon8	c.A1192G	p.I398V	GACACTATCCGTC	.	83.0	32.0	141.0	0.0	.	835
CPLX4	339302	ucsc.edu;bcgsc.ca	37	18	56979978	56979978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CPLX4	NM_181654	exon2	c.A194G	p.Q65R	TTTTTCTGTGTAA	.	38.0	4.0	190.0	0.0	.	91
DNAH9	1770	broad.mit.edu;bcgsc.ca	37	17	11795184	11795184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DNAH9	NM_001372	exon58	c.A11203G	p.T3735A	AGCATAACCTTCT	.	81.0	5.0	188.0	0.0	.	168
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167095694	167095694	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DUSP27	NM_001080426	exon5	c.C1326T	p.S442S	GGAGAGCGTGAGC	.	55.0	19.0	35.0	0.0	.	71
EGFR	1956	ucsc.edu;bcgsc.ca	37	7	55270298	55270298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EGFR	NM_005228	exon27	c.A3251G	p.D1084G	TAGACGACACCTT	.	46.0	4.0	78.0	0.0	.	44910
ENTPD3	956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	40442397	40442397	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ENTPD3	NM_001248	exon4	c.C181T	p.L61L	ATTGTGCTGGATG	.	157.0	68.0	381.0	0.0	.	91
EPHA2	1969	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16464912	16464912	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EPHA2	NM_004431	exon4	c.A837G	p.G279G	AAAAAATCCAGGC	.	8.0	3.0	69.0	0.0	.	1419
FAM104B	90736	ucsc.edu;bcgsc.ca	37	X	55172691	55172691	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FAM104B	NM_001166699	exon3	c.A177G	p.R59R	ACTTGCTCTCTCT	.	38.0	4.0	55.0	0.0	.	130
FANCM	57697	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	45658561	45658561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FANCM	NM_020937	exon20	c.A5336G	p.Q1779R	TTCCACAGAAGGT	.	72.0	23.0	88.0	0.0	.	569
FOXO3	2309	ucsc.edu;bcgsc.ca	37	6	108985092	108985092	+	Silent	SNP	C	C	G	rs200866771		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FOXO3	NM_001455	exon2	c.C1056G	p.A352A	CTCAGCCAGCCTG	.	85.0	11.0	108.0	2.0	C|0.999;G|0.001	1295
HDAC10	83933	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50688345	50688345	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	HDAC10	NM_032019	exon5	c.G438T	p.V146V	GTTGAACACACAG	.	63.0	29.0	77.0	2.0	.	226
HERC1	8925	broad.mit.edu;bcgsc.ca	37	15	63932493	63932493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	HERC1	NM_003922	exon61	c.A11759G	p.N3920S	TTTGGATTCCAGG	.	78.0	6.0	167.0	0.0	.	666
KAZN	23254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	14925544	14925544	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KAZN	NM_015209	exon1	c.G51C	p.Q17H	GGTCCAGTCGGCC	.	67.0	50.0	196.0	0.0	.	91
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu	37	19	34791642	34791642	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KIAA0355	NM_014686	exon2	c.C264T	p.N88N	CCTGAACGTCTTC	.	72.0	5.0	135.0	0.0	.	91
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39688230	39688230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KIF21A	NM_001173464	exon38	c.A5021G	p.N1674S	GTTTAATTACTGG	.	104.0	36.0	314.0	0.0	.	97
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	107704297	107704298	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	LAMB4	NM_007356	exon22	c.2969_2970del	p.990_990del	AAGGCACTCCCCT	.	181.0	0.0	438.0	0.0	.	140
MAST1	22983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12975699	12975699	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MAST1	NM_014975	exon13	c.G1443T	p.T481T	TGAGACGGTGCTA	.	54.0	26.0	143.0	0.0	.	523
MFSD3	113655	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145735131	145735131	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MFSD3	NM_138431	exon1	c.C415T	p.Q139X	ACCGTGCAGGTGG	.	60.0	27.0	44.0	0.0	.	69
MIS12	79003	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	5392627	5392627	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MIS12	NM_001258220	exon2	c.C445T	p.Q149X	ATTGTTCAGGCCA	.	102.0	9.0	168.0	0.0	.	90
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36211168	36211168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MLL4	NM_014727	exon3	c.T919C	p.F307L	ATCAAGTTTGTTT	.	66.0	27.0	54.0	0.0	.	697
MN1	4330	broad.mit.edu;mdanderson.org	37	22	28194927	28194927	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MN1	NM_002430	exon1	c.G1605A	p.Q535Q	CTGCTGCTGCTGT	.	36.0	9.0	20.0	1.0	.	993
MORN3	283385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122097220	122097220	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MORN3	NM_173855	exon2	c.C180T	p.A60A	ATAGATGGCTCCT	.	94.0	33.0	233.0	0.0	.	90
MTM1	4534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149814213	149814213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MTM1	NM_000252	exon9	c.C736T	p.L246F	CAGCCTCTTGTCG	.	119.0	104.0	177.0	0.0	.	228
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1096485	1096485	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MUC2	NM_002457	exon35	c.6498delG	p.K2166fs	CGACAAGGTGTCC	.	50.0	23.0	110.0	0.0	.	90
NCKAP5	344148	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133538773	133538773	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_207363	exon15	c.A4901C	p.E1634A	CCACTTTCTGTCT	.	275.0	124.0	423.0	2.0	.	.
NOC2L	26155	ucsc.edu;bcgsc.ca	37	1	883916	883916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NOC2L	NM_015658	exon13	c.T1511C	p.V504A	AGGATCACGGAGA	.	28.0	4.0	116.0	0.0	.	92
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9792677	9792677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	OGG1	NM_016819	exon2	c.A186C	p.Q62H	GGATCAAGTATGG	.	71.0	24.0	177.0	0.0	.	660
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29597095	29597095	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	OVCH1	NM_183378	exon24	c.T3000C	p.S1000S	TCTGTGAGAATTT	.	73.0	25.0	102.0	0.0	.	210
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	4925135	4925135	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_032972	exon1	c.A271T	p.T91S	TTGACAACTACTA	.	219.0	11.0	275.0	0.0	.	.
PHB2	11331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7078680	7078680	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PHB2	.	.	.	.	AGGGGAGGAGATT	.	62.0	31.0	142.0	1.0	.	48
PIGC	5279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172413127	172413127	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PIGC	.	.	.	.	CACCTACCCGAGA	.	71.0	43.0	61.0	0.0	.	226
PLAC8L1	153770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145483862	145483862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PLAC8L1	NM_001029869	exon1	c.G13A	p.G5R	TACTTCCAAACCA	.	135.0	52.0	296.0	0.0	.	90
PLXNA1	5361	broad.mit.edu;bcgsc.ca	37	3	126723964	126723964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PLXNA1	NM_032242	exon6	c.T1775C	p.L592P	CTGACCTCTCAGC	.	69.0	4.0	169.0	0.0	.	93
RAB2A	5862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61496802	61496802	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RAB2A	NM_002865	exon4	c.G222T	p.S74S	AAGGTCGTATTAC	.	115.0	39.0	177.0	0.0	.	659
RAP1GAP	5909	ucsc.edu;bcgsc.ca	37	1	21940577	21940577	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RAP1GAP	NM_001145658	exon8	c.T489C	p.H163H	ATTGAAATGCTCC	.	28.0	4.0	99.0	1.0	.	245
RGL3	57139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11517408	11517408	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RGL3	NM_001035223	exon6	c.T770A	p.L257H	TCTATGAGGGTCA	.	30.0	18.0	69.0	0.0	.	227
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5681008	5681008	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RNF216	NM_207116	exon16	c.1989-1G>T	.	TCTTCACTGAAAT	.	90.0	42.0	105.0	0.0	.	274
S1PR3	1903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	91616620	91616620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	S1PR3	NM_005226	exon2	c.G505T	p.G169C	ACGCTGGGCGCCC	.	50.0	39.0	85.0	0.0	.	949
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	51171120	51171120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SALL1	NM_002968	exon3	c.C3878T	p.P1293L	GCCAGGGGAGCAT	.	44.0	29.0	172.0	0.0	.	98
SALL2	6297	ucsc.edu;bcgsc.ca	37	14	21991026	21991026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SALL2	NM_005407	exon2	c.A2836G	p.R946G	CCTGCCTGCAGAA	.	29.0	4.0	65.0	0.0	.	92
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180036920	180036920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SESTD1	NM_178123	exon5	c.A296G	p.K99R	TCTGGCTTTACCA	.	195.0	77.0	304.0	0.0	.	228
SKIV2L	6499	ucsc.edu;bcgsc.ca	37	6	31929371	31929371	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SKIV2L	NM_006929	exon9	c.T837C	p.S279S	TCCATCTCAGGAG	.	30.0	4.0	95.0	0.0	.	290
SLC12A7	10723	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1079607	1079607	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC12A7	NM_006598	exon10	c.C1302T	p.I434I	CGCCATGATACCT	.	45.0	16.0	108.0	0.0	.	138
SLC2A6	11182	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136339125	136339125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC2A6	NM_017585	exon7	c.G1013T	p.R338L	ACCTTGCGGCCTG	.	24.0	15.0	96.0	1.0	.	90
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164907129	164907129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLITRK3	NM_014926	exon2	c.C1490T	p.P497L	GCTGCAGGCTGGA	.	43.0	23.0	69.0	0.0	.	100
SOX6	55553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	15994640	15994640	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SOX6	NM_001145819	exon16	c.A2241T	p.P747P	GGTGATTGGAATC	.	125.0	60.0	160.0	0.0	.	93
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17719328	17719328	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SREBF1	NM_001005291	exon13	c.C2319T	p.S773S	GGCACTGCTCAGG	.	57.0	21.0	106.0	0.0	.	91
SSRP1	6749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57100232	57100232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SSRP1	NM_003146	exon6	c.G635A	p.G212D	TAACGACCACGAG	.	83.0	41.0	114.0	1.0	.	228
STAR	6770	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38008314	38008314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	STAR	NM_000349	exon1	c.T23C	p.L8P	GCGCACAGCTTGA	.	21.0	9.0	56.0	1.0	.	91
STK11	6794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1221320	1221320	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	STK11,NS,carcinoma,+1	STK11	NM_000455	exon6	c.G843A	p.P281P	CCCCCCGCTCTCT	.	43.0	16.0	45.0	0.0	.	5227
SYT8	90019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1856575	1856575	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SYT8	NM_138567	exon3	c.C186A	p.L62L	CCTCCTCGTCTCC	.	34.0	13.0	38.0	0.0	.	91
TARS2	80222	ucsc.edu;bcgsc.ca	37	1	150470188	150470188	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TARS2	NM_025150	exon10	c.A1203G	p.T401T	AGATACACTCGCC	.	42.0	4.0	65.0	0.0	.	91
TECPR1	25851	broad.mit.edu;bcgsc.ca	37	7	97851027	97851027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TECPR1	NM_015395	exon23	c.A3103G	p.R1035G	TCAGCCTCTGTCT	.	70.0	4.0	191.0	0.0	.	91
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	202245372	202245372	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TRAK2	NM_015049	exon16	c.T2639A	p.L880X	CCTAATAAACTGC	.	127.0	52.0	189.0	0.0	.	90
TRIM15	89870	ucsc.edu;bcgsc.ca	37	6	30138279	30138279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TRIM15	NM_033229	exon5	c.T733C	p.C245R	TGCAGGTGTGAGA	.	43.0	4.0	111.0	1.0	.	90
TRPC1	7220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142525018	142525018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TRPC1	NM_001251845	exon13	c.A2323G	p.I775V	AATGAAATAAGGG	.	219.0	95.0	256.0	0.0	.	92
TSC22D1	8848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	45147977	45147977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TSC22D1	NM_183422	exon1	c.C2234T	p.P745L	GTAGAGGGCTGCT	.	88.0	34.0	119.0	0.0	.	90
TTC14	151613	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180320104	180320104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TTC14	NM_001042601	exon1	c.T55G	p.S19A	TTGCTCTCTCTAC	.	22.0	9.0	44.0	0.0	.	91
TTC24	164118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156552954	156552954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TTC24	NM_001105669	exon4	c.G1031T	p.R344L	CTGCCCGGGACTC	.	253.0	70.0	300.0	0.0	.	46
VANGL2	57216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	160388964	160388964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	VANGL2	NM_020335	exon4	c.C365T	p.T122M	TCCTCACGCCTCT	.	66.0	17.0	48.0	0.0	.	91
VEZF1	7716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56052168	56052168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	VEZF1	NM_007146	exon6	c.C1232G	p.T411S	GACATAGTCCCAG	.	176.0	74.0	268.0	0.0	.	136
ZNF302	55900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35174079	35174079	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_018443	exon4	c.A150G	p.P50P	TAAGCCATATGTG	.	108.0	44.0	181.0	0.0	.	.
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22364225	22364225	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZNF676	NM_001001411	exon3	c.294delT	p.Y98X	TTTATTATAACCT	.	171.0	78.0	465.0	0.0	.	90
ZNF683	257101	broad.mit.edu;bcgsc.ca	37	1	26694190	26694190	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_173574	exon3	c.T213C	p.S71S	CAGTGCAGACCTG	.	55.0	4.0	162.0	0.0	.	.
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227627	74227628	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	p.T432L	GCAACTGTCTGTC	.	114.0	40.0	201.0	0.0	.	.