Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA8	10351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66873752	66873752	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ABCA8	NM_007168	exon31	c.G3987A	p.A1329A	CCACAGCGCGTTC	.	120.0	23.0	42.0	0.0	.	93
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44149823	44149823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AEBP1	NM_001129	exon11	c.C1278A	p.D426E	TGAGGACGACTAC	.	138.0	14.0	57.0	0.0	.	90
AIRE	326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45712255	45712255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AIRE	NM_000383	exon9	c.C1066T	p.R356W	GAGCCCCGGCCCC	.	32.0	11.0	28.0	0.0	.	91
AJAP1	55966	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	4772503	4772503	+	Silent	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AJAP1	NM_018836	exon2	c.C573G	p.A191A	GGAGGCCCTGGAG	.	29.0	11.0	10.0	0.0	.	515
AMIGO3	386724	broad.mit.edu;ucsc.edu	37	3	49756547	49756547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AMIGO3	NM_198722	exon1	c.T352C	p.S118P	TGTTAGATGATAG	.	46.0	4.0	20.0	0.0	.	91
ANKRD13C	81573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70740488	70740488	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANKRD13C	NM_030816	exon11	c.G1309C	p.G437R	CTCTACCCAGATG	.	141.0	26.0	79.0	0.0	.	90
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94025298	94025298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANKRD32	NM_032290	exon18	c.G2406T	p.K802N	TCACAAGACTAAT	.	82.0	25.0	66.0	0.0	.	92
APOC3	345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116701502	116701502	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	APOC3	NM_000040	exon3	c.C69T	p.A23A	AGAGGCCGAGGAT	.	38.0	6.0	47.0	0.0	.	68
AQP1	358	hgsc.bcm.edu;broad.mit.edu	37	7	30951862	30951862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AQP1	NM_198098	exon1	c.C338T	p.S113L	TCCTCTCAGGCAT	.	82.0	10.0	15.0	0.0	.	514
AQP4	361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	24442273	24442273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AQP4	NM_001650	exon2	c.C320A	p.T107N	TTCCTGGTGCACA	.	51.0	13.0	37.0	0.0	.	90
ARHGAP28	79822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6887166	6887166	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGAP28	NM_001010000	exon11	c.C987T	p.H329H	GCCTCACGTCAAA	.	106.0	27.0	91.0	0.0	.	91
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	149677216	149677216	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARSI	NM_001012301	exon2	c.G1271A	p.W424X	AGCTTCCACTCAC	.	66.0	24.0	35.0	0.0	.	92
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	25959333	25959333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP10A	NM_024490	exon10	c.G1832A	p.R611Q	AACCTCCGCAGGA	.	31.0	12.0	16.0	0.0	.	139
ATP2A1	487	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	28913552	28913552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP2A1	NM_004320	exon17	c.T2369C	p.V790A	TCCCGGTGCAGCT	.	135.0	44.0	58.0	0.0	.	93
ATXN7	6314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	63975996	63975996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATXN7	NM_000333	exon10	c.G1506T	p.E502D	AGAAGAGTCTGTT	.	110.0	19.0	57.0	0.0	.	90
AXL	558	ucsc.edu;bcgsc.ca	37	19	41736911	41736911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AXL	NM_021913	exon5	c.A626G	p.N209S	CCCATAACGCCAA	.	32.0	4.0	28.0	0.0	.	1403
BACH1	571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30699058	30699058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BACH1	NM_206866	exon3	c.G913A	p.E305K	AAATCAGAAGTGA	.	23.0	9.0	36.0	0.0	.	92
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72903721	72903721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BAZ1B	NM_032408	exon6	c.A694G	p.I232V	TGATGATCTAGGT	.	229.0	120.0	92.0	0.0	.	159
BEND4	389206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	42145706	42145706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BEND4	NM_001159547	exon3	c.C793A	p.P265T	GGTTTGGAGTTGG	.	158.0	11.0	78.0	0.0	.	90
BNC1	646	ucsc.edu;bcgsc.ca	37	15	83933193	83933193	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BNC1	NM_001717	exon4	c.T810C	p.H270H	TTGGTCATGACCC	.	43.0	4.0	57.0	0.0	.	93
BTBD6	90135	ucsc.edu;bcgsc.ca	37	14	105715779	105715779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BTBD6	NM_033271	exon4	c.C389T	p.P130L	ACATTCCAGACGT	.	38.0	4.0	42.0	0.0	.	90
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98743690	98743690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C10orf12	NM_015652	exon1	c.G2543A	p.C848Y	GGAAATGTAGGAG	.	113.0	29.0	82.0	0.0	.	92
C2CD2L	9854	ucsc.edu;bcgsc.ca	37	11	118984632	118984632	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C2CD2L	NM_014807	exon12	c.C1560T	p.P520P	AGAGCCCAGTGGG	.	34.0	4.0	36.0	0.0	.	68
CBR4	84869	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169923357	169923357	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CBR4	NM_032783	exon5	c.401-1G>C	.	TGCTTCCTAGGAC	.	49.0	24.0	31.0	0.0	.	90
CC2D2A	57545	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	15601277	15601277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CC2D2A	NM_001080522	exon37	c.A4622G	p.D1541G	GAGAAGATGTAGA	.	273.0	20.0	109.0	0.0	.	25
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80136965	80136965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC57	NM_198082	exon9	c.G1312A	p.E438K	CCCTTTCAATGTC	.	123.0	24.0	49.0	0.0	.	24
CDKL5	6792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18622799	18622799	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDKL5	NM_003159	exon12	c.G1755A	p.L585L	TTCACTGTCTGCA	.	49.0	32.0	36.0	0.0	.	838
CHRDL1	91851	ucsc.edu;bcgsc.ca	37	X	109919506	109919506	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CHRDL1	NM_001143981	exon12	c.T1330C	p.L444L	TGACTAAATCTTC	.	39.0	4.0	26.0	0.0	.	130
CNTN2	6900	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205039578	205039578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNTN2	NM_005076	exon19	c.T2456C	p.V819A	CCAAGGTGTGGGC	.	35.0	7.0	21.0	0.0	.	91
CNTNAP3	79937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	39140553	39140553	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNTNAP3	NM_033655	exon12	c.C1839A	p.G613G	CAGGGGGCCACTT	.	593.0	114.0	172.0	1.0	.	91
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32151735	32151735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL16A1	NM_001856	exon28	c.G1841A	p.G614E	GGTGGCCCCTGCA	.	126.0	70.0	85.0	0.0	.	98
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	36565805	36565805	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL8A2	NM_005202	exon1	c.G39A	p.L13L	TAGCAGCAGCAGC	.	25.0	14.0	9.0	0.0	.	90
COLGALT2	23127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183944304	183944304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_015101	exon3	c.G419A	p.R140Q	GCAAACCGGGAGG	.	60.0	12.0	23.0	0.0	.	.
CPNE9	151835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9754230	9754230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPNE9	.	.	.	.	GGGGTGTACCAGG	.	35.0	5.0	34.0	0.0	.	70
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145623090	145623090	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPSF1	NM_013291	exon21	c.C2078G	p.S693C	ACCTTGGACTGCT	.	41.0	10.0	15.0	0.0	.	91
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207789962	207789962	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CR1	NM_000651	exon41	c.A6704T	p.H2235L	GGAGACACACAGG	.	173.0	42.0	111.0	0.0	.	93
CTDSPL2	51496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44811383	44811383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CTDSPL2	NM_016396	exon11	c.G1129A	p.E377K	TTCCGTGAACATT	.	109.0	27.0	75.0	0.0	.	90
CWF19L1	55280	ucsc.edu;bcgsc.ca	37	10	102003453	102003453	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CWF19L1	NM_018294	exon11	c.1044+2T>C	.	TAACTCACATGTG	.	38.0	4.0	31.0	0.0	.	90
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	83129262	83129262	+	Missense_Mutation	SNP	G	G	A	rs201228346		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CYLC1	NM_021118	exon4	c.G1546A	p.D516N	AGAAAGGACACAG	.	94.0	33.0	84.0	0.0	G|0.999;A|0.001	112
DDX46	9879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134143603	134143603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DDX46	NM_014829	exon16	c.C2120T	p.A707V	ACAGAGCAGGGCG	.	90.0	24.0	77.0	0.0	.	227
DEPDC1	55635	hgsc.bcm.edu;broad.mit.edu	37	1	68955231	68955232	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DEPDC1	NM_017779	exon3	c.375_376insA	p.N125fs	TATGTTGTTTTTT	.	333.0	29.0	157.0	0.0	.	90
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	60498943	60498943	+	Silent	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DIAPH3	NM_001042517	exon18	c.T2136G	p.L712L	AAACTTAAGTTCT	.	239.0	50.0	148.0	0.0	.	516
DLL3	10683	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39996002	39996002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DLL3	NM_016941	exon6	c.C1004G	p.S335C	CTGACTCTGCCTA	.	135.0	28.0	51.0	1.0	.	1083
DNAJB8	165721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	128181899	128181899	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DNAJB8	NM_153330	exon3	c.C190T	p.L64L	CATACAGGGAGCG	.	120.0	14.0	56.0	0.0	.	226
DOCK9	23348	broad.mit.edu;bcgsc.ca	37	13	99534228	99534228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DOCK9	NM_001130049	exon24	c.G2596T	p.A866S	AGAAGGCGATCAT	.	145.0	8.0	60.0	0.0	.	90
DSN1	79980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35383170	35383170	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DSN1	NM_001145315	exon10	c.G957A	p.Q319Q	ACCGAGCTGTACT	.	74.0	17.0	33.0	0.0	.	92
EMB	133418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	49724007	49724007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EMB	NM_198449	exon2	c.C167T	p.S56F	TCCAAGGAAAAGT	.	78.0	16.0	55.0	0.0	.	90
EPN2	22905	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19189061	19189061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EPN2	NM_014964	exon4	c.G724T	p.D242Y	AATGGCGACTGGT	.	160.0	37.0	57.0	1.0	.	91
ERC1	23085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1192560	1192560	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ERC1	NM_178039	exon3	c.G900C	p.Q300H	AAAGCAGACCCTA	.	38.0	9.0	49.0	0.0	.	660
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53670586	53670586	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ESPL1	NM_012291	exon8	c.A1883T	p.H628L	CCACCCACCTGGT	.	42.0	14.0	15.0	0.0	.	228
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72233982	72233982	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EYA1	NM_172059	exon5	c.C405A	p.G135G	GGAAATGCCGTAC	.	313.0	41.0	112.0	0.0	.	652
FAT4	79633	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	126369855	126369855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAT4	NM_024582	exon9	c.G7684A	p.A2562T	AATAAGGCCGATT	.	25.0	12.0	42.0	0.0	.	108
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126371628	126371628	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAT4	NM_024582	exon9	c.G9457C	p.D3153H	GCTCTTGATTATG	.	67.0	11.0	75.0	0.0	.	108
FBXW5	54461	ucsc.edu;bcgsc.ca	37	9	139836046	139836046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FBXW5	NM_018998	exon7	c.A1187G	p.D396G	ACGTGGTCCAGCG	.	32.0	4.0	23.0	0.0	.	226
FMR1NB	158521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	147084806	147084806	+	Silent	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FMR1NB	NM_152578	exon2	c.A363C	p.A121A	TTCCGCATTGGAA	.	204.0	13.0	113.0	0.0	.	131
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39265592	39265592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FREM2	NM_207361	exon1	c.A4111G	p.T1371A	AATTTTACCCAGG	.	91.0	10.0	76.0	0.0	.	100
FZD9	8326	hgsc.bcm.edu;broad.mit.edu	37	7	72849249	72849250	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FZD9	NM_003508	exon1	c.912_913insCAG	p.I304delinsIQ	CGTGATCCAGGAG	.	108.0	20.0	36.0	0.0	.	1082
GABBR1	2550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29574930	29574930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GABBR1	NM_001470	exon17	c.G2058T	p.W686C	GACCCACCAAATC	.	183.0	18.0	65.0	0.0	.	521
GALNTL5	168391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151664464	151664464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GALNTL5	NM_145292	exon2	c.G133A	p.A45T	CTGTCAGCTTGGT	.	170.0	116.0	97.0	0.0	.	92
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	121726310	121726310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GLI2	NM_005270	exon5	c.C664T	p.R222W	AGCCCGCGGGTGA	.	102.0	11.0	30.0	0.0	.	954
GLIPR1	11010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75875766	75875766	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GLIPR1	NM_006851	exon2	c.T327A	p.S109S	TTTTTCTGTGTCT	.	143.0	32.0	77.0	0.0	.	159
GRAMD3	65983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	125759319	125759319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRAMD3	NM_001146321	exon1	c.T2C	p.M1T	GCAAGATGTGGAA	.	114.0	63.0	56.0	0.0	.	90
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10132262	10132262	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRHL1	NM_198182	exon11	c.G1449A	p.Q483Q	CTTGCAGCGGGGC	.	162.0	65.0	66.0	0.0	.	92
GSK3B	2932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	119635000	119635000	+	Nonsense_Mutation	SNP	G	G	A	rs201787969		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GSK3B	NM_002093	exon5	c.C499T	p.R167X	AACTTCGGAACAG	.	77.0	8.0	47.0	0.0	.	978
GTF2IRD2	84163	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	74212425	74212425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GTF2IRD2	NM_173537	exon16	c.C1426A	p.Q476K	TATACTGGTCATA	.	2107.0	101.0	197.0	0.0	.	23
HDGFL1	154150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	22570186	22570186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HDGFL1	NM_138574	exon1	c.G382A	p.E128K	GGCGACGAATTGG	.	94.0	38.0	28.0	0.0	.	90
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	15	28457606	28457606	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HERC2	NM_004667	exon43	c.A6910T	p.K2304X	CCTGTTTAGTCGA	.	921.0	161.0	185.0	0.0	.	234
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89591339	89591339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HERC3	NM_014606	exon16	c.A1847T	p.E616V	TTCCTGAGATTTC	.	89.0	31.0	82.0	0.0	.	660
HIST1H2BD	3017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26158595	26158595	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HIST1H2BD	NM_021063	exon1	c.C198T	p.F66F	TTCCTTCGTCAAC	.	202.0	26.0	106.0	0.0	.	70
HLA-DPB1	3115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33053656	33053656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HLA-DPB1	NM_002121	exon4	c.G747T	p.R249S	CAGGAGGAGCAAG	.	116.0	8.0	51.0	0.0	.	515
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18339305	18339305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HPS5	NM_181507	exon2	c.G101A	p.R34H	TTTAGACGACTGG	.	96.0	22.0	59.0	0.0	.	133
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31778842	31778842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HSPA1L	NM_005527	exon2	c.G908A	p.R303Q	TCAAATCGAGCTC	.	113.0	60.0	58.0	0.0	.	230
HUNK	30811	ucsc.edu;bcgsc.ca	37	21	33340660	33340660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HUNK	NM_014586	exon6	c.A973G	p.T325A	AATTACACGGGCA	.	43.0	4.0	57.0	0.0	.	334
IGFBP2	3485	ucsc.edu;bcgsc.ca	37	2	217526707	217526707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IGFBP2	NM_000597	exon3	c.T799C	p.Y267H	GGCCTGTACAACC	.	28.0	4.0	30.0	0.0	.	946
IGSF11	152404	broad.mit.edu;bcgsc.ca	37	3	118649063	118649063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IGSF11	NM_001015887	exon2	c.C112A	p.Q38K	CTGGCTGACCCCG	.	121.0	7.0	62.0	0.0	.	90
IKBKAP	8518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	111658811	111658811	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IKBKAP	NM_003640	exon25	c.G2701C	p.D901H	CCAAATCAAAGTC	.	93.0	31.0	82.0	0.0	.	318
IL21	59067	ucsc.edu;bcgsc.ca	37	4	123534071	123534071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IL21	NM_001207006	exon4	c.T373C	p.C125R	AATCACATGAAGG	.	44.0	4.0	54.0	0.0	.	90
INSL5	10022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	67266850	67266850	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	INSL5	NM_005478	exon1	c.G55T	p.E19X	GCACTTCTGAGAT	.	58.0	25.0	64.0	0.0	.	90
ITGBL1	9358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	102366888	102366888	+	Silent	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITGBL1	NM_004791	exon10	c.T1380G	p.G460G	TGATGGTCTCATT	.	208.0	50.0	105.0	0.0	.	92
KIAA1161	57462	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	34371283	34371283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1161	.	.	.	.	GCCCACCATATCG	.	54.0	33.0	16.0	0.0	.	136
KIAA1462	57608	ucsc.edu;bcgsc.ca	37	10	30316258	30316258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1462	NM_020848	exon3	c.G2819A	p.G940D	CCGCCACCTTCTT	.	38.0	4.0	34.0	0.0	.	72
KIAA1731	85459	ucsc.edu;bcgsc.ca	37	11	93430323	93430323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1731	NM_033395	exon15	c.A2245G	p.R749G	GATGCTAGAAAAA	.	42.0	4.0	68.0	0.0	.	22
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245862258	245862258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIF26B	NM_018012	exon14	c.G6097A	p.A2033T	GTCCGCGCGAAGT	.	97.0	72.0	46.0	0.0	.	25
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47371491	47371491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KLHL18	NM_025010	exon4	c.T452C	p.M151T	CAATGATGTGTGC	.	123.0	19.0	49.0	0.0	.	90
KLHL9	55958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21334288	21334288	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KLHL9	NM_018847	exon1	c.C571T	p.L191L	GTTTTAGAAACTC	.	40.0	9.0	42.0	0.0	.	94
KRT35	3886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39635729	39635729	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRT35	NM_002280	exon3	c.A581T	p.Q194L	ACCAGCTGCCGCA	.	184.0	16.0	75.0	0.0	.	92
KRTAP5-11	440051	broad.mit.edu;bcgsc.ca	37	11	71293828	71293834	+	Frame_Shift_Del	DEL	GAGCCAC	GAGCCAC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GAGCCAC	GAGCCAC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRTAP5-11	NM_001005405	exon1	c.50_56del	p.17_19del	CTGCCGGAGCCAC	.	237.0	10.0	71.0	0.0	.	90
LALBA	3906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48963012	48963012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LALBA	NM_002289	exon2	c.A145G	p.M49V	GAAACATGGTACA	.	109.0	18.0	66.0	0.0	.	90
LAMC1	3915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183111719	183111719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LAMC1	NM_002293	exon28	c.C4624G	p.L1542V	GGCACCCTAAACA	.	51.0	8.0	20.0	0.0	.	252
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141264466	141264466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRP1B	NM_018557	exon53	c.A8420C	p.E2807A	GCATTTTCATCAC	.	185.0	79.0	99.0	0.0	.	311
LRRIQ1	84125	broad.mit.edu;mdanderson.org	37	12	85449370	85449370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRRIQ1	NM_001079910	exon8	c.A799G	p.R267G	AGAACAAGATTTA	.	80.0	7.0	60.0	0.0	.	95
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17831786	17831786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP1S	NM_018174	exon2	c.G160C	p.D54H	AACCTTGATGAAC	.	104.0	23.0	65.0	0.0	.	90
MAP3K5	4217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	136913604	136913604	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP3K5	NM_005923	exon22	c.T3027C	p.D1009D	CTTGACATCTCTT	.	99.0	16.0	66.0	0.0	.	982
MAP9	79884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156289738	156289738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP9	NM_001039580	exon5	c.G708T	p.E236D	GCTAACCTCAGGA	.	88.0	29.0	110.0	0.0	.	91
MOCS1	4337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39895091	39895091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MOCS1	NM_005943	exon1	c.T227C	p.L76P	TCTGTGAGGGAGA	.	101.0	17.0	33.0	0.0	.	92
MOCS2	4338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	52405551	52405551	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MOCS2	NM_176806	exon1	c.G9A	p.P3P	GCACAGCGGCACC	.	49.0	19.0	31.0	0.0	.	90
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60757607	60757607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MRC2	NM_006039	exon15	c.C2375T	p.S792F	TGGCCTCCCTGCA	.	131.0	30.0	46.0	0.0	.	117
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49936589	49936589	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MST1R	NM_001244937	exon2	c.A1338G	p.V446V	GACCTGTACTGGT	.	109.0	12.0	63.0	0.0	.	1406
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11169374	11169374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MTOR	NM_004958	exon56	c.A7501T	p.I2501F	TGTTAATAATCTG	.	119.0	9.0	92.0	0.0	.	1439
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	18058480	18058480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO15A	NM_016239	exon45	c.G8281A	p.V2761M	CGGGCCGTGGTCA	.	48.0	25.0	19.0	0.0	.	97
MYO15A	51168	ucsc.edu;bcgsc.ca	37	17	18045411	18045411	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO15A	NM_016239	exon23	c.C5668G	p.L1890V	GAACACCTATACC	.	44.0	4.0	27.0	0.0	.	97
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59464100	59464100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO1E	NM_004998	exon22	c.C2476T	p.L826F	ACCTGAGGGACAC	.	87.0	19.0	49.0	0.0	.	514
MYO9B	4650	ucsc.edu;bcgsc.ca	37	19	17264818	17264818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO9B	NM_001130065	exon5	c.A1040G	p.E347G	TCAGCGAGGAAGA	.	46.0	4.0	51.0	0.0	.	67
NBPF9	400818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	144828583	144828583	+	Silent	SNP	G	G	A	rs76717388		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	AGTCTTGCAGGAC	.	101.0	32.0	82.0	0.0	G|0.500;A|0.500	.
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71039123	71039123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NCOA2	NM_006540	exon19	c.G3841A	p.G1281S	GCATACCACTAGG	.	149.0	23.0	71.0	0.0	.	639
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152552146	152552146	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NEB	NM_004543	exon18	c.C1620G	p.P540P	ATCAGGGGGGATA	.	167.0	16.0	111.0	0.0	.	145
NET1	10276	ucsc.edu;bcgsc.ca	37	10	5496968	5496968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NET1	NM_001047160	exon10	c.T1084C	p.C362R	TCCGAGTGCCAGT	.	43.0	4.0	56.0	0.0	.	290
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32466120	32466120	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NLRC4	NM_001199138	exon5	c.G2332C	p.E778Q	CATCTTCTTCATT	.	130.0	14.0	54.0	0.0	.	276
NPSR1	387129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34698055	34698055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	NPSR1,NS,malignant_melanoma,0	NPSR1	NM_207172	exon1	c.G31A	p.D11N	AGCTTCGATTCCA	.	106.0	38.0	60.0	0.0	.	94
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228511096	228511096	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OBSCN	NM_001271223	exon67	c.C18312T	p.C6104C	TGACTGCGTGGTG	.	141.0	27.0	54.0	0.0	.	403
OPN5	221391	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	47763244	47763244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OPN5	NM_181744	exon4	c.C701A	p.A234D	AAGTAGCTCATTT	.	220.0	18.0	97.0	1.0	.	69
OPRL1	4987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62729669	62729676	+	Frame_Shift_Del	DEL	CTGGGGCC	CTGGGGCC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CTGGGGCC	CTGGGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OPRL1	NM_000913	exon4	c.630_637del	p.210_213del	GGATTACTGGGGC	.	257.0	19.0	117.0	0.0	.	69
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	248112614	248112614	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2L8	NM_001001963	exon1	c.C455A	p.S152X	TAGGCTCGATCAA	.	529.0	117.0	156.0	0.0	.	70
OR2T33	391195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248436686	248436686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2T33	NM_001004695	exon1	c.T431C	p.M144T	CACGACATGGTCA	.	647.0	176.0	175.0	0.0	.	114
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55111334	55111334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR4A16	NM_001005274	exon1	c.C658A	p.L220I	GTCATCCTAAACT	.	342.0	76.0	138.0	0.0	.	69
OR8H2	390151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	55872714	55872714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR8H2	NM_001005200	exon1	c.C196A	p.H66N	CTTACTCACCTGT	.	184.0	18.0	99.0	0.0	.	70
OR9A2	135924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142724155	142724155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR9A2	NM_001001658	exon1	c.T65G	p.L22R	TGGTGTAGTCCTT	.	146.0	51.0	82.0	0.0	.	69
OSBPL1A	114876	ucsc.edu;bcgsc.ca	37	18	21776105	21776105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OSBPL1A	NM_080597	exon18	c.G1661A	p.R554K	CATTTTCTGAGGA	.	34.0	4.0	39.0	0.0	.	94
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25835782	25835782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OXSM	NM_017897	exon3	c.G1177T	p.V393F	GGGGCAGTCGAGG	.	122.0	18.0	89.0	0.0	.	132
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164781342	164781342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PBX1	NM_001204963	exon6	c.C953A	p.A318D	TGTCAGCCCATGG	.	180.0	26.0	87.0	0.0	.	659
PCDH7	5099	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	31144428	31144428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PCDH7	NM_001173523	exon3	c.C3725T	p.P1242L	ATAAGCCATCTCC	.	20.0	4.0	14.0	0.0	.	229
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82583266	82583266	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PCLO	NM_014510	exon5	c.T7003C	p.L2335L	CGGATAAGCTACT	.	360.0	82.0	120.0	0.0	.	29
PDCD2L	84306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34916969	34916969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PDCD2L	NM_032346	exon7	c.C1021G	p.P341A	CAGACTCCCATGG	.	67.0	23.0	67.0	0.0	.	91
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169846627	169846627	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PHC3	NM_024947	exon8	c.C1633G	p.Q545E	GGCCCTGGGACAG	.	86.0	31.0	64.0	0.0	.	227
PHF21A	51317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45975168	45975168	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PHF21A	NM_016621	exon10	c.A1005G	p.K335K	GTGAGATTTAACT	.	396.0	190.0	126.0	0.0	.	92
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21161719	21161719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PI4KA	NM_058004	exon10	c.A1099G	p.T367A	AGGAAGTGTAGTA	.	54.0	28.0	45.0	0.0	.	454
PI4KA	5297	ucsc.edu;bcgsc.ca	37	22	21174845	21174845	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PI4KA	NM_058004	exon5	c.T511C	p.L171L	TCTCCAAGGCCTG	.	41.0	4.0	38.0	0.0	.	454
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94353216	94353216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PIWIL4	NM_152431	exon19	c.C2348A	p.T783N	GTCCTACCTACTA	.	89.0	13.0	88.0	0.0	.	91
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129303388	129303388	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLXND1	NM_015103	exon6	c.C1869T	p.I623I	GCCCGAGATCTGC	.	92.0	41.0	35.0	0.0	.	90
PNMA3	29944	ucsc.edu;bcgsc.ca	37	X	152226798	152226798	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PNMA3	NM_013364	exon2	c.C1386T	p.A462A	CAAGGCCAAGTAG	.	37.0	4.0	31.0	0.0	.	600
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	23815325	23815325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPARGC1A	NM_013261	exon8	c.G1781T	p.R594I	GAGGATCTACTGC	.	52.0	9.0	52.0	0.0	.	230
PPIL1	51645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36823793	36823793	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPIL1	NM_016059	exon4	c.A297G	p.A99A	GGCCATTGCGAGA	.	63.0	35.0	28.0	0.0	.	91
PPP2R1B	5519	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111624197	111624197	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPP2R1B	NM_002716	exon9	c.A1134G	p.L378L	AAGAGGTAGAAGA	.	55.0	11.0	56.0	1.0	.	658
PRDM7	11105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90126813	90126813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRDM7	NM_001098173	exon9	c.G1169C	p.S390T	GCCATACTCATCC	.	181.0	63.0	122.0	0.0	.	92
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	64084858	64084858	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRICKLE2	NM_198859	exon8	c.C2404A	p.R802R	CGTATCGCAGGCG	.	119.0	19.0	80.0	0.0	.	95
PRKCDBP	112464	broad.mit.edu;bcgsc.ca	37	11	6340705	6340705	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRKCDBP	NM_145040	exon2	c.G474A	p.L158L	GGCCTCCAGCTGC	.	47.0	5.0	34.0	0.0	.	115
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6553138	6553138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRKCQ	NM_006257	exon3	c.T137A	p.I46N	TTCTGGATATACA	.	98.0	46.0	98.0	0.0	.	1380
PRSS50	29122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46755769	46755769	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRSS50	NM_013270	exon4	c.C693T	p.D231D	CACATAGTCCGTG	.	86.0	61.0	50.0	0.0	.	90
PTDSS1	9791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	97345763	97345763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTDSS1	NM_014754	exon13	c.C1391T	p.S464L	CCAAGTCAAAAGT	.	113.0	17.0	64.0	0.0	.	91
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70954625	70954625	+	Missense_Mutation	SNP	C	C	G	rs112738980	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTPRB	NM_001109754	exon17	c.G4258C	p.D1420H	AAAAGTCAAAGTC	.	138.0	15.0	90.0	0.0	.	226
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70984008	70984008	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTPRB	NM_001109754	exon8	c.G1786C	p.D596H	CTTTGTCTGGAAC	.	227.0	25.0	99.0	0.0	.	226
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25435486	25435486	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RNF17	NM_031277	exon27	c.C3855T	p.P1285P	TATACCCCAGTTT	.	216.0	28.0	114.0	0.0	.	228
SEMA3D	223117	broad.mit.edu;bcgsc.ca	37	7	84666204	84666204	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SEMA3D	NM_152754	exon11	c.1191+1G>A	.	TACATACTGTACC	.	69.0	6.0	59.0	0.0	.	138
SEMA3D	223117	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	84697509	84697509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SEMA3D	NM_152754	exon5	c.C587A	p.T196K	TTACCTGTCATTA	.	109.0	12.0	56.0	1.0	.	138
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2282393	2282393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SGSM2	NM_014853	exon23	c.C2963T	p.S988L	TCTCATCGGAGCA	.	155.0	60.0	114.0	0.0	.	68
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17795714	17795714	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SH3GL2	NM_003026	exon9	c.G1032A	p.V344V	TTATGTGGAAATT	.	277.0	59.0	109.0	0.0	.	91
SLC13A4	26266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	135390908	135390908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC13A4	NM_012450	exon4	c.G506A	p.G169D	GAGTTGCCCGCCA	.	108.0	13.0	41.0	0.0	.	90
SLC18A1	6570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	20004896	20004896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC18A1	NM_003053	exon15	c.C1337A	p.S446Y	CCGGTGGATGGAC	.	79.0	13.0	54.0	0.0	.	92
SLC25A23	79085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	6458301	6458301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC25A23	NM_024103	exon2	c.G191A	p.G64D	AGCCCGCCATCTG	.	13.0	12.0	13.0	0.0	.	92
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17421125	17421125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC7A2	NM_001164771	exon11	c.C1805A	p.P602Q	TCTTACCATTTTT	.	343.0	73.0	127.0	0.0	.	93
SLCO2A1	6578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133673915	133673915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLCO2A1	NM_005630	exon4	c.G520A	p.V174M	CAACCACCATCAG	.	131.0	56.0	59.0	0.0	.	90
SMCR8	140775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18221376	18221376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SMCR8	NM_144775	exon1	c.G2273T	p.G758V	GCTATGGCTGCTA	.	101.0	26.0	53.0	0.0	.	91
SPAG7	9552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4864100	4864100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPAG7	NM_004890	exon2	c.A134G	p.K45R	TCCACTTTCTGTT	.	198.0	151.0	136.0	0.0	.	91
SPAM1	6677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	123594436	123594436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPAM1	NM_153189	exon3	c.C812T	p.P271L	AGTCTCCTGTAGC	.	107.0	12.0	71.0	0.0	.	94
SPIRE2	84501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89924764	89924764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPIRE2	NM_032451	exon8	c.G1121T	p.C374F	TGCCCTGCATCCT	.	60.0	24.0	41.0	0.0	.	90
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64505683	64505683	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SRGAP1	NM_020762	exon17	c.C2061T	p.I687I	CATCATCATCCAC	.	150.0	18.0	96.0	0.0	.	653
ST3GAL3	6487	ucsc.edu;bcgsc.ca	37	1	44363938	44363938	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ST3GAL3	NM_174963	exon8	c.C636A	p.T212T	AGTCACCAAAGAG	.	39.0	4.0	28.0	0.0	.	93
STRC	161497	broad.mit.edu;bcgsc.ca	37	15	43895454	43895454	+	Missense_Mutation	SNP	C	C	T	rs141841779	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	STRC	NM_153700	exon23	c.G4531A	p.G1511S	CTTTGCCCATGGC	.	99.0	5.0	67.0	0.0	C|1.000;G|0.000	90
SUPT20H	55578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37619483	37619483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_017569	exon6	c.G196A	p.E66K	GCTTCTCTAACAA	.	60.0	19.0	67.0	0.0	.	.
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42607990	42607990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TCF20	NM_181492	exon1	c.G3322C	p.V1108L	CAATTACTCCCTG	.	52.0	7.0	38.0	0.0	.	95
TDRD1	56165	ucsc.edu;bcgsc.ca	37	10	115991247	115991247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TDRD1	NM_198795	exon26	c.A3541G	p.T1181A	TCAGAAACAGCAT	.	41.0	4.0	58.0	1.0	.	90
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179631316	179631316	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TDRD5	NM_001199085	exon15	c.T2400A	p.P800P	GTTACCTCTACAG	.	76.0	43.0	36.0	0.0	.	94
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137928455	137928455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	THSD7B	.	.	.	.	ATCATGGAAAATG	.	136.0	27.0	63.0	0.0	.	75
TMCO5A	145942	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38229051	38229051	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMCO5A	NM_152453	exon3	c.G144A	p.L48L	CAGGCTGGAAAGT	.	21.0	5.0	15.0	0.0	.	514
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	129028648	129028648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMEM132C	NM_001136103	exon3	c.G1121A	p.R374K	GCAACAGGTAAGC	.	25.0	15.0	16.0	0.0	.	68
TNC	3371	ucsc.edu;bcgsc.ca	37	9	117848511	117848511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TNC	NM_002160	exon3	c.A1499G	p.Q500R	GGGCATTGGCGAT	.	43.0	4.0	34.0	0.0	.	517
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25665077	25665077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TOP2B	NM_001068	exon21	c.C2641T	p.P881S	AGTTGGGTAGTTT	.	277.0	65.0	135.0	0.0	.	273
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18188782	18188782	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TOP3A	NM_004618	exon14	c.C1650T	p.Y550Y	GCCCACGTACATC	.	169.0	82.0	63.0	0.0	.	228
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7578454	7578455	+	In_Frame_Ins	INS	-	-	CGCGGA	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	TP53,NS,carcinoma,-1	TP53	NM_001126112	exon5	c.476_477insTCCGCG	p.A159delinsVRA	GCCATGGCGCGGA	.	32.0	13.0	32.0	0.0	.	70225
TPH1	7166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18050909	18050909	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TPH1	NM_004179	exon6	c.471-1G>C	.	TCTCCACTAATGA	.	63.0	17.0	60.0	0.0	.	90
TSEN34	79042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54695669	54695669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TSEN34	NM_024075	exon3	c.A341G	p.E114G	TCCTGGAGAAGAT	.	46.0	10.0	30.0	0.0	.	90
TTC28	23331	broad.mit.edu;bcgsc.ca	37	22	28501558	28501558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001145418	exon8	c.G3016A	p.V1006I	GGTAAACGCCCCC	.	125.0	6.0	90.0	0.0	.	.
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179588199	179588199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon74	c.G21628A	p.V7210M	AAACCACACAGGT	.	118.0	38.0	93.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179638382	179638382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon32	c.G7401T	p.K2467N	TGACACCTTACAT	.	263.0	15.0	126.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179659228	179659228	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon8	c.C1296G	p.A432A	ATCAACGGCAGCA	.	100.0	38.0	71.0	0.0	.	636
TVP23C	201158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15449210	15449210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_145301	exon5	c.A351C	p.K117N	CACAGTTTTATTC	.	266.0	99.0	114.0	0.0	.	.
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41854881	41854881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TYRO3	NM_006293	exon4	c.G545A	p.G182E	TCGGGGGACCCGC	.	47.0	31.0	42.0	0.0	.	1388
UBE2Q1	55585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154527970	154527970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UBE2Q1	NM_017582	exon3	c.T471G	p.C157W	GAGTTTACACAGG	.	126.0	50.0	66.0	0.0	.	226
WDR7	23335	ucsc.edu;bcgsc.ca	37	18	54483320	54483320	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	WDR7	NM_015285	exon20	c.T3249C	p.P1083P	AGGGCCTGAAGCA	.	39.0	4.0	55.0	0.0	.	93
ZC3H3	23144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144550407	144550407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZC3H3	NM_015117	exon8	c.C2147A	p.P716H	GAGAAGGGGCAGG	.	58.0	20.0	24.0	0.0	.	91
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	35852772	35852772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZMYM4	NM_005095	exon12	c.C2005T	p.L669F	CAGCGTCTCGCTG	.	87.0	8.0	68.0	0.0	.	291
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44739856	44739856	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF227	NM_182490	exon6	c.A1273T	p.I425F	TTTCACATCCATC	.	46.0	11.0	40.0	0.0	.	91
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53014087	53014087	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001099694	exon6	c.T453A	p.P151P	CAAGCCTATTAAA	.	168.0	50.0	121.0	0.0	.	.
ZNF843	283933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31448157	31448157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF843	NM_001136509	exon2	c.C14T	p.P5L	GCAAAGGGGAGGC	.	41.0	10.0	15.0	0.0	.	68
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53854648	53854648	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_138374	exon4	c.G720A	p.A240A	AGGAGCGAAACAA	.	149.0	8.0	110.0	0.0	.	.