Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48119516	48119516	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ABCC12	NM_033226	exon27	c.C3816A	p.L1272L	ATTACGGAGAAGA	.	144.0	43.0	191.0	0.0	.	93
ACOXL	55289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111556210	111556210	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ACOXL	NM_001142807	exon6	c.T369C	p.C123C	GCCGTGTGAAAAT	.	48.0	17.0	75.0	0.0	.	90
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	148684674	148684674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	ACVR2A,NS,carcinoma,0	ACVR2A	NM_001616	exon11	c.T1373C	p.I458T	AAACCATTGAAGA	.	73.0	18.0	121.0	1.0	.	831
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77355100	77355100	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ADAMTS18	NM_199355	exon16	c.2164-1G>A	.	CACTAGCTGTGAC	.	111.0	34.0	102.0	0.0	.	1036
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77401346	77401346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ADAMTS18	NM_199355	exon4	c.G770A	p.R257H	TTCTTGCGTCGTC	.	76.0	32.0	91.0	0.0	.	1036
ADD2	119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70933425	70933425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ADD2	NM_001185055	exon2	c.C164A	p.A55E	AGGTCCGCCGCCC	.	74.0	31.0	104.0	0.0	.	93
ADPRHL1	113622	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	114107605	114107632	+	Frame_Shift_Del	DEL	GCGAGAGTACGAGGTGGTCCAGGCCCCC	GCGAGAGTACGAGGTGGTCCAGGCCCCC	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	GCGAGAGTACGAGGTGGTCCAGGCCCCC	GCGAGAGTACGAGGTGGTCCAGGCCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ADPRHL1	NM_138430	exon1	c.121_148del	p.41_50del	CTCCTGGCGAGAG	.	96.0	9.0	107.0	0.0	.	90
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	87097615	87097615	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_152336	exon20	c.G2703A	p.K901K	TGATAAGCTAGCA	.	61.0	23.0	72.0	0.0	.	.
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105413999	105413999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	AHNAK2	NM_138420	exon7	c.G7789T	p.G2597C	TGGGGCCTTTCAG	.	183.0	76.0	198.0	0.0	.	47
AKR1B15	441282	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	134262493	134262493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	AKR1B15	NM_001080538	exon11	c.C947A	p.T316N	TGGCAACCATACT	.	127.0	74.0	117.0	1.0	.	23
ALG1	56052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	5121883	5121883	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ALG1	NM_019109	exon1	c.G33A	p.L11L	GGCGCTGTGTCTG	.	18.0	14.0	29.0	0.0	.	92
AMPH	273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	38457451	38457451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	AMPH	NM_001635	exon17	c.G1372T	p.A458S	CCTCAGCCCGAGT	.	67.0	19.0	74.0	0.0	.	95
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65208032	65208032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ANKDD1A	NM_182703	exon2	c.G71A	p.R24H	CCGCCCGCCAGAA	.	43.0	13.0	57.0	0.0	.	69
ANKFN1	162282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	54559743	54559743	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ANKFN1	NM_153228	exon17	c.G2127A	p.Q709Q	CACACAGGAGGTG	.	133.0	47.0	195.0	2.0	.	136
ANKRD27	84079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33096767	33096767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ANKRD27	NM_032139	exon24	c.C2467T	p.H823Y	GCTCGTGATGGCC	.	454.0	292.0	166.0	0.0	.	95
AP5Z1	9907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4825905	4825905	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_014855	exon10	c.A1157T	p.E386V	ACTCGGAAGCCGT	.	73.0	30.0	64.0	0.0	.	.
ARHGAP17	55114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24955152	24955152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ARHGAP17	NM_001006634	exon15	c.G1273A	p.V425I	CATGGACGGATGT	.	121.0	31.0	73.0	1.0	.	227
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47424838	47424838	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_004491	exon1	c.A2906T	p.N969I	TGTTTAACTCCCC	.	130.0	68.0	111.0	0.0	.	.
ARID3B	10620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74836781	74836781	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ARID3B	NM_006465	exon2	c.C504T	p.V168V	TTCTGTCTCCACA	.	77.0	27.0	104.0	0.0	.	90
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42492257	42492257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ATP1A3	NM_001256214	exon4	c.C227A	p.A76D	TCCCGGGCCAGGA	.	63.0	49.0	96.0	0.0	.	92
BSN	8927	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49701930	49701930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	BSN	NM_003458	exon9	c.G11683A	p.V3895M	GAGAGCGTGTTCT	.	30.0	8.0	55.0	0.0	.	97
C10orf113	387638	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21414907	21414907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	C10orf113	NM_001010896	exon2	c.G313A	p.A105T	GAGCTGCCTGGAT	.	93.0	32.0	110.0	1.0	.	93
C2orf16	84226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27804122	27804122	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	C2orf16	NM_032266	exon1	c.C4683A	p.P1561P	TAACCCCTCTTGG	.	100.0	21.0	79.0	0.0	.	67
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201021743	201021743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CACNA1S	NM_000069	exon32	c.C3895A	p.Q1299K	TTATTTGGGTCCC	.	113.0	38.0	123.0	0.0	.	94
CACNA2D1	781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81591312	81591312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CACNA2D1	NM_000722	exon36	c.C2864A	p.A955D	AGGGAGGCCGTGA	.	84.0	27.0	160.0	1.0	.	96
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	90577673	90577673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CASP8AP2	NM_001137667	exon8	c.G4664A	p.G1555D	CTTCTGGCCTTAA	.	68.0	21.0	84.0	0.0	.	24
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42750569	42750569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CCDC13	NM_144719	exon16	c.G2051T	p.G684V	TCCTTTCCCCGCA	.	60.0	19.0	82.0	0.0	.	91
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179701999	179701999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CCDC141	NM_173648	exon23	c.G3947T	p.S1316I	TCAGCACTGATTC	.	81.0	28.0	117.0	0.0	.	78
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	13	103398453	103398453	+	Missense_Mutation	SNP	C	C	T	rs141118373	alternate_allele	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_001146197	exon4	c.G4594A	p.G1532S	AAGGACCCATTTG	.	81.0	25.0	84.0	0.0	C|0.991;A|0.009	.
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49201424	49201424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CCDC71	NM_022903	exon2	c.A218G	p.Y73C	GAACTATAGCCAT	.	116.0	44.0	164.0	0.0	.	91
CCDC81	60494	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	86108768	86108768	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CCDC81	NM_001156474	exon6	c.A741G	p.K247K	AGACAAAGAAGAA	.	50.0	25.0	57.0	1.0	.	91
CCDC97	90324	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41822393	41822393	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CCDC97	NM_052848	exon2	c.C151T	p.L51L	GTGGCCCTGGACA	.	100.0	70.0	142.0	1.0	.	90
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	59217241	59217241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CDH20	NM_031891	exon10	c.C1679A	p.S560Y	GGAGGTCTGGTTT	.	117.0	48.0	95.0	0.0	.	155
CELA3B	23436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22304871	22304871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CELA3B	NM_007352	exon2	c.A53G	p.Y18C	CAGGCTATGGCCC	.	108.0	42.0	102.0	0.0	.	91
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109810616	109810616	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CELSR2	NM_001408	exon17	c.G6252T	p.L2084L	GCGGCTGCTGGCC	.	32.0	9.0	45.0	0.0	.	526
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	73767615	73767615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CHST3	NM_004273	exon3	c.C826A	p.R276S	GCGGTGCGCATCC	.	25.0	10.0	19.0	0.0	.	90
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76592443	76592443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CNTNAP4	NM_138994	exon23	c.A3571G	p.I1191V	GTTCGCATTTATC	.	176.0	52.0	172.0	0.0	.	70
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	139737668	139737668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	COL22A1	NM_152888	exon24	c.C2155T	p.P719S	CACCAGGGGGTCC	.	214.0	10.0	92.0	0.0	.	103
COL23A1	91522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177669082	177669082	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	COL23A1	NM_173465	exon27	c.C1542A	p.G514G	CGGCTCGCCCTTC	.	46.0	8.0	53.0	0.0	.	91
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189850437	189850437	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	COL3A1	NM_000090	exon4	c.G380C	p.G127A	TTCCAGGACAACC	.	192.0	74.0	232.0	0.0	.	581
CPT1C	126129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50200664	50200664	+	Missense_Mutation	SNP	C	C	A	rs201792786	alternate_allele	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CPT1C	NM_001199752	exon4	c.C223A	p.L75I	TGGTTCCTCCAGC	.	128.0	22.0	99.0	1.0	C|0.999;T|0.000	92
CRELD2	79174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50312939	50312939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CRELD2	NM_024324	exon2	c.C191T	p.T64M	AAAAGACGCTGTC	.	268.0	17.0	182.0	0.0	.	90
CTBP2	1488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126715003	126715003	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	CTBP2	NM_022802	exon1	c.C1326T	p.P442P	AGGGGTGGGAGAG	.	99.0	44.0	117.0	0.0	.	90
DCN	1634	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	91558395	91558395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DCN	NM_001920	exon3	c.T311C	p.L104P	TTCTTCAGGTTCT	.	94.0	17.0	93.0	1.0	.	555
DDX12P	440081	hgsc.bcm.edu;bcgsc.ca	37	12	9580257	9580257	+	RNA	DEL	C	C	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	.	.	.	.	ATCTGGCTCTGGA	.	340.0	51.0	377.0	0.0	.	.
DGKI	9162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	137080389	137080389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DGKI	NM_004717	exon33	c.G3036T	p.Q1012H	CAGAAGCTGGCAC	.	142.0	37.0	132.0	0.0	.	228
DLGAP2	9228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1514022	1514022	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DLGAP2	NM_004745	exon3	c.G1164T	p.L388L	GCTGCTGAAGTCC	.	73.0	31.0	104.0	1.0	.	22
DLK2	65989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43418725	43418725	+	Missense_Mutation	SNP	T	T	A	rs80187636	alternate_allele	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DLK2	NM_023932	exon6	c.A704T	p.D235V	AGGCAGTCGAAGT	.	114.0	50.0	102.0	0.0	.	68
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32834720	32834720	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DMD	NM_004006	exon6	c.A395T	p.Q132L	GTTTGTTGCAATC	.	87.0	56.0	107.0	0.0	.	265
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7721980	7721980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DNAH2	NM_020877	exon69	c.T10556C	p.L3519P	AGCTGCTGGGCAT	.	24.0	13.0	47.0	0.0	.	102
DOCK10	55619	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225669789	225669789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DOCK10	NM_014689	exon37	c.C4104A	p.F1368L	GCTGAAGAAGTCG	.	253.0	95.0	377.0	1.0	.	92
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	42064797	42064797	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DSCAM	NM_001271534	exon3	c.C447T	p.S149S	CACCGAGGAGGGG	.	64.0	19.0	104.0	0.0	.	101
DTX3	196403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58002913	58002913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DTX3	NM_178502	exon7	c.C1022T	p.A341V	TGAGAGCGAAGGG	.	87.0	38.0	94.0	0.0	.	1083
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45437120	45437120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DUOX1	NM_017434	exon19	c.C2164T	p.R722W	GAAGAGCGGCAGG	.	59.0	25.0	84.0	0.0	.	142
DUS1L	64118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80019565	80019565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	DUS1L	NM_022156	exon7	c.G626A	p.G209E	ATGTTCCCGTTAG	.	50.0	18.0	81.0	0.0	.	91
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38438475	38438475	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	EGFLAM	NM_001205301	exon17	c.C2382T	p.A794A	TTGTGCCCATGGG	.	177.0	104.0	151.0	0.0	.	187
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132445446	132445446	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	EP400	NM_015409	exon2	c.G282T	p.L94L	CCCACTGCCGCTC	.	245.0	126.0	304.0	1.0	.	520
ESPNL	339768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	239010624	239010624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ESPNL	NM_194312	exon2	c.C337T	p.R113C	GCCGCCCGTTTTG	.	46.0	18.0	59.0	0.0	.	69
ESR1	2099	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	152129176	152129176	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ESR1	NM_000125	exon1	c.C129A	p.Y43X	GGTGTACCTGGAC	.	62.0	25.0	57.0	0.0	.	1042
ESR2	2100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64727461	64727461	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ESR2	NM_001214902	exon4	c.C658A	p.R220R	CTCTCCGGGAGCC	.	39.0	7.0	45.0	0.0	.	611
EVA1C	59271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33829933	33829933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_058187	exon3	c.G386A	p.R129Q	ACCAGCGGGCCTG	.	160.0	28.0	205.0	0.0	.	.
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74014602	74014602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	EVPL	NM_001988	exon12	c.G1364T	p.G455V	GTCTCCCCGCCAG	.	104.0	32.0	108.0	0.0	.	93
EVX2	344191	broad.mit.edu;mdanderson.org	37	2	176944851	176944851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	EVX2	NM_001080458	exon3	c.C1415A	p.A472D	AGCGGAGCCTCGT	.	28.0	7.0	23.0	0.0	.	70
EZR	7430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159210363	159210363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	EZR	NM_003379	exon2	c.T53A	p.F18Y	ATTGCAAACTCCA	.	126.0	36.0	140.0	0.0	.	70
FAM129C	199786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17657556	17657556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FAM129C	NM_001098524	exon14	c.G1709T	p.G570V	CTGAGGGCATCTA	.	42.0	12.0	42.0	0.0	.	90
FAM208B	54906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5803296	5803296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_017782	exon19	c.T7036C	p.F2346L	AAGTCATTTCAGA	.	35.0	13.0	54.0	0.0	.	.
FAM84A	151354	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	14774404	14774404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FAM84A	NM_145175	exon2	c.G301T	p.G101C	GTGAGCGGTGGCC	.	14.0	7.0	13.0	0.0	.	91
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125074249	125074249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FER1L6	NM_001039112	exon25	c.G3304T	p.V1102L	ACACAGGTGGATG	.	268.0	213.0	111.0	0.0	.	100
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27939760	27939760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FGR	NM_001042729	exon12	c.C1351A	p.L451I	TGATGAGCTCAGT	.	127.0	62.0	111.0	0.0	.	547
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152280060	152280060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FLG	NM_002016	exon3	c.C7302A	p.S2434R	TCCAGTGCTGGTC	.	156.0	47.0	145.0	0.0	.	106
FRMPD2	143162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49450281	49450281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FRMPD2	NM_001018071	exon5	c.G490A	p.E164K	ACACTTCTTTCTC	.	112.0	40.0	178.0	0.0	.	153
FSHB	2488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30255242	30255242	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	FSHB	NM_000510	exon3	c.A285T	p.P95P	ATACCCAGTGGCC	.	152.0	32.0	117.0	0.0	.	93
GABRA5	2558	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	27128577	27128577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GABRA5	NM_001165037	exon6	c.C370A	p.L124I	AACCTCCTTGCCA	.	89.0	40.0	119.0	0.0	.	91
GDF5	8200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34025505	34025505	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GDF5	NM_000557	exon1	c.G204C	p.G68G	GGTGGCCCCCCCA	.	89.0	38.0	60.0	0.0	.	226
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154287212	154287212	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GEMIN5	NM_015465	exon16	c.A2334G	p.S778S	TTGGTCTGACACA	.	131.0	44.0	172.0	0.0	.	228
GIMAP8	155038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150171330	150171330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GIMAP8	NM_175571	exon4	c.G913T	p.D305Y	GCTCCGGACATCT	.	138.0	74.0	105.0	1.0	.	95
GK2	2712	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	80327763	80327763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GK2	NM_033214	exon1	c.C1592T	p.P531L	CCCAAAGGCAGAC	.	189.0	45.0	266.0	1.0	.	94
GNMT	27232	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	42928679	42928679	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GNMT	NM_018960	exon1	c.C174T	p.C58C	CGGCTGCCAGCGG	.	24.0	10.0	17.0	0.0	.	514
GOLGA6L6	727832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	20740171	20740171	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_001145004	exon8	c.C1579A	p.R527R	GCTCCCGTATCTT	.	213.0	72.0	302.0	0.0	.	.
GSG1L	146395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27840186	27840186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	GSG1L	NM_001109763	exon5	c.C754T	p.R252C	CCTTGCGCTTGTG	.	145.0	41.0	159.0	0.0	.	91
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242202212	242202212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	HDLBP	NM_001243900	exon6	c.G472A	p.D158N	CTTGGTCTTTGGC	.	96.0	37.0	130.0	0.0	.	290
HIF3A	64344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46825090	46825090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	HIF3A	NM_152795	exon10	c.C1202A	p.A401D	AGGCTGCCCTGGC	.	123.0	68.0	91.0	0.0	.	228
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44218826	44218826	+	Silent	SNP	A	A	G	rs2070694	byfrequency	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	HSP90AB1	NM_007355	exon7	c.A999G	p.L333L	ATTGCTATTTATT	.	96.0	53.0	100.0	0.0	A|0.991;G|0.009	658
IGF2BP3	10643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	23509624	23509624	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	IGF2BP3	NM_006547	exon1	c.A106T	p.K36X	CAGTCTTCACCAG	.	80.0	30.0	87.0	0.0	.	92
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18743087	18743087	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	IGSF22	NM_173588	exon4	c.C373T	p.L125L	CCTTCAGCACGTG	.	101.0	30.0	83.0	0.0	.	140
ISLR	3671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74467261	74467261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ISLR	NM_201526	exon2	c.A62G	p.E21G	GCCCTGAGCCCTG	.	41.0	10.0	57.0	0.0	.	155
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31405619	31405619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ITGAD	NM_005353	exon2	c.G94T	p.A32S	GAGGATGCAGGCG	.	104.0	15.0	132.0	0.0	.	226
ITGAV	3685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	187455211	187455222	+	In_Frame_Del	DEL	TCGGCTTCGCCG	TCGGCTTCGCCG	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	TCGGCTTCGCCG	TCGGCTTCGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ITGAV	NM_001145000	exon1	c.146_157del	p.49_53del	GTTACTTCGGCTT	.	180.0	36.0	222.0	0.0	.	653
ITIH5	80760	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	7679202	7679202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ITIH5	NM_001001851	exon5	c.G641T	p.G214V	CCGCGCCCACTGC	.	37.0	15.0	51.0	1.0	.	92
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	140631020	140631020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KCNK9	NM_016601	exon2	c.C606A	p.F202L	GTCCCCGAACCCA	.	283.0	214.0	93.0	0.0	.	93
KIAA1211L	343990	broad.mit.edu;bcgsc.ca	37	2	99439605	99439605	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_207362	exon7	c.1131delC	p.P377fs	GCCTGCGGGGGGC	.	39.0	8.0	64.0	0.0	.	.
KIAA1644	85352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	44681337	44681337	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KIAA1644	NM_001099294	exon4	c.G570T	p.P190P	CATCAGCGGTGGG	.	129.0	34.0	137.0	1.0	.	23
KIAA1958	158405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115421771	115421771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KIAA1958	NM_133465	exon4	c.G1573A	p.A525T	TCGGGCGCGCGTT	.	159.0	69.0	117.0	0.0	.	91
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5923025	5923025	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KIAA2026	NM_001017969	exon8	c.T2971C	p.L991L	AATCCAATGAGGC	.	167.0	61.0	146.0	0.0	.	92
KLHL6	89857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183210427	183210427	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KLHL6	NM_130446	exon6	c.C1419A	p.I473I	TCCCCCGATCACA	.	118.0	31.0	160.0	0.0	.	93
KRT4	3851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53207647	53207647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KRT4	NM_002272	exon1	c.G196A	p.A66T	ACCCAGCCACACT	.	70.0	38.0	93.0	0.0	.	96
KRT76	51350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53170525	53170525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KRT76	NM_015848	exon1	c.G551T	p.R184L	TGTTCCCGCTCCT	.	116.0	38.0	136.0	0.0	.	154
KRTAP5-8	57830	ucsc.edu;mdanderson.org	37	11	71249152	71249152	+	Silent	SNP	C	C	T	rs112809261	byfrequency	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	KRTAP5-8	NM_021046	exon1	c.C51T	p.C17C	GGGCTGCGGCTCT	.	75.0	37.0	44.0	1.0	C|0.896;T|0.104	44
LOXL1	4016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74235272	74235272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	LOXL1	NM_005576	exon2	c.C1180T	p.R394C	TCCCTGCGCTGTG	.	91.0	29.0	136.0	0.0	.	226
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	40714888	40714889	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	LRRK2	NM_198578	exon35	c.5068_5069insT	p.I1690fs	TCTGAAATTATCA	.	74.0	33.0	108.0	0.0	.	533
MALSU1	115416	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	23338990	23338990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_138446	exon1	c.G19T	p.V7L	GGCCGTGTGGCGC	.	11.0	6.0	12.0	0.0	.	.
MAP3K1	4214	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56176951	56176951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MAP3K1	NM_005921	exon13	c.A2221G	p.I741V	AATTGTATTCTTG	.	92.0	41.0	139.0	1.0	.	956
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	161507445	161507445	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MAP3K4	NM_006724	exon8	c.G2407T	p.E803X	CTGAAGGAGCTCT	.	95.0	34.0	80.0	0.0	.	548
MAP4K1	11184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39105049	39105049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MAP4K1	NM_007181	exon5	c.T350C	p.V117A	CGGCAGACATAGC	.	206.0	23.0	63.0	0.0	.	980
MAPRE3	22924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27248563	27248563	+	Silent	SNP	C	C	T	rs113977877		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MAPRE3	NM_012326	exon5	c.C582T	p.G194G	AAATGGCGGCCAT	.	119.0	48.0	151.0	1.0	C|0.500;T|0.500	91
MARCH6	10299	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	10403615	10403615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MARCH6	NM_005885	exon15	c.G1294T	p.V432F	GTATATGTCTTCT	.	151.0	37.0	134.0	1.0	.	501
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36222992	36222992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MLL4	NM_014727	exon27	c.G5621T	p.R1874L	CATCCCGGAGGCC	.	218.0	50.0	71.0	0.0	.	697
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	58980026	58980026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MPEG1	NM_001039396	exon1	c.G313A	p.A105T	AATTTGCCCAGGA	.	83.0	7.0	84.0	0.0	.	70
MRPS2	51116	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	138392921	138392921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MRPS2	NM_016034	exon2	c.C121T	p.L41F	AGGACGCTTGGAA	.	89.0	29.0	68.0	0.0	.	90
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10534941	10534941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MYH3	NM_002470	exon36	c.A5273G	p.K1758R	ATGGCCTTCTTGG	.	48.0	25.0	122.0	0.0	.	95
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26298603	26298603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MYO18B	NM_032608	exon30	c.C4847A	p.A1616D	CCCAGGCCCTAGG	.	50.0	13.0	66.0	0.0	.	142
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8619381	8619395	+	In_Frame_Del	DEL	CTCACAGTCGATAAG	CTCACAGTCGATAAG	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	CTCACAGTCGATAAG	CTCACAGTCGATAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	MYO1F	NM_012335	exon4	c.292_306del	p.98_102del	CTGGTTCTCACAG	.	46.0	14.0	55.0	0.0	.	93
NCDN	23154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36025987	36025987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NCDN	NM_001014839	exon4	c.G235T	p.A79S	TTCGATGCTGTCG	.	109.0	36.0	129.0	0.0	.	155
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33329288	33329288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NCOA6	NM_014071	exon11	c.C4772T	p.P1591L	GGCAAGGGAGTGG	.	130.0	54.0	71.0	0.0	.	292
NEURL	9148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	105350084	105350084	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NEURL	NM_004210	exon6	c.C1680A	p.C560X	CATCTGCCGCCGC	.	63.0	17.0	77.0	0.0	.	226
NLRP5	126206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56539232	56539232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NLRP5	NM_153447	exon7	c.G1633T	p.V545L	AAGTCAGTGTTTG	.	116.0	62.0	120.0	1.0	.	162
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150696315	150696315	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NOS3	NM_001160111	exon8	c.G994C	p.A332P	TGGTACGCCCTCC	.	51.0	32.0	42.0	0.0	.	1011
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132438610	132438610	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NPHP3	NM_153240	exon2	c.A458C	p.Q153P	ATTGCTTGGTATT	.	64.0	28.0	107.0	0.0	.	91
NPTX2	4885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98256508	98256508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NPTX2	NM_002523	exon4	c.G920T	p.G307V	GTGACGGCAAGTG	.	64.0	30.0	64.0	0.0	.	515
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102334693	102334693	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	NXF3	NM_022052	exon13	c.C1158T	p.A386A	TCACGGGGCTGAG	.	77.0	58.0	108.0	0.0	.	205
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228560614	228560614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OBSCN	NM_001271223	exon105	c.G25006T	p.A8336S	CTGCTGGCAGAGG	.	58.0	19.0	72.0	1.0	.	403
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228503597	228503597	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OBSCN	NM_001271223	exon61	c.C15933A	p.G5311G	GGAGGGCGGCGAG	.	51.0	16.0	63.0	1.0	.	403
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228525079	228525079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OBSCN	NM_001271223	exon77	c.G19666A	p.G6556S	GCCCGAGGCGAGG	.	165.0	55.0	223.0	0.0	.	403
OR4D5	219875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123811018	123811018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OR4D5	NM_001001965	exon1	c.G695T	p.G232V	GGGAGGGCCGCAG	.	143.0	35.0	145.0	0.0	.	69
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4945191	4945191	+	Missense_Mutation	SNP	C	C	A	rs148836962	alternate_allele	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OR51G1	NM_001005237	exon1	c.G379T	p.A127S	AGACGGCCACGTA	.	104.0	26.0	103.0	0.0	C|0.999;T|0.001	70
OTOF	9381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	26699163	26699163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	OTOF	NM_194248	exon23	c.G2699T	p.G900V	GCCGAGCCGAAGC	.	27.0	10.0	27.0	0.0	.	135
PACSIN3	29763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47201773	47201773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PACSIN3	NM_016223	exon6	c.G567T	p.Q189H	CCGTTCCTGCAGT	.	30.0	13.0	23.0	0.0	.	68
PAN3	255967	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28794511	28794511	+	Silent	SNP	G	G	A	rs45530141	byfrequency	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PAN3	NM_175854	exon6	c.G996A	p.A332A	ATTAGCGCCAGGT	.	67.0	28.0	77.0	0.0	G|0.988;A|0.012	69
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222692	140222692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PCDHA8	NM_031856	exon1	c.G1786T	p.A596S	GTGCGCGCAGTGG	.	42.0	21.0	64.0	0.0	.	92
PCNXL3	399909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65394885	65394885	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PCNXL3	NM_032223	exon22	c.G3534A	p.A1178A	CCGGGCGCTGCTG	.	29.0	7.0	21.0	0.0	.	46
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85681082	85681082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PDE8A	NM_002605	exon22	c.G2438T	p.W813L	AATACTGGAAAGG	.	103.0	36.0	146.0	0.0	.	94
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41966302	41966302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PDZRN4	NM_001164595	exon10	c.C1721A	p.A574D	ATGCAGCCGAGGA	.	161.0	81.0	200.0	1.0	.	296
PHF21B	112885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45279146	45279146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PHF21B	NM_138415	exon13	c.G1416T	p.Q472H	GCCCCTCTGGCGG	.	38.0	10.0	29.0	0.0	.	93
PLCD3	113026	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43196348	43196348	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PLCD3	.	.	.	.	CAGCAGCCGCCGC	.	36.0	15.0	39.0	0.0	.	703
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143613	143613	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PLEKHG4B	NM_052909	exon3	c.C738A	p.I246I	TAGCATCCCCAGG	.	64.0	15.0	74.0	0.0	.	228
POLDIP3	84271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42983538	42983538	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	POLDIP3	NM_032311	exon8	c.1062delT	p.V354fs	GGTGATAACATTC	.	126.0	37.0	140.0	0.0	.	90
POLR3D	661	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	22105780	22105780	+	Nonsense_Mutation	SNP	G	G	T	rs199704064	alternate_allele	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	POLR3D	NM_001722	exon5	c.G475T	p.E159X	ATGCTGGAGAAGG	.	966.0	46.0	117.0	0.0	G|1.000;A|0.000	90
PRAMEF17	391004	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	13716967	13716967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_001099851	exon2	c.G454T	p.D152Y	TTCATAGACCTCT	.	212.0	96.0	209.0	0.0	.	.
PRKD1	5587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	30100159	30100159	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PRKD1	NM_002742	exon10	c.C1461T	p.A487A	AGGATTGGCCCCA	.	130.0	43.0	188.0	0.0	.	1534
PTGDS	5730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139873558	139873558	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PTGDS	NM_000954	exon2	c.C228A	p.G76G	TGGTGGCCTCAAC	.	79.0	28.0	67.0	0.0	.	91
PTGER4	5734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40692406	40692406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	PTGER4	NM_000958	exon3	c.C1393A	p.P465T	GCTGGGCCTGCCC	.	111.0	30.0	114.0	0.0	.	658
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80887176	80887176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_001145026	exon7	c.C966A	p.S322R	TAACAGCCATCCA	.	77.0	21.0	78.0	0.0	.	.
RNF123	63891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49744294	49744294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	RNF123	NM_022064	exon26	c.G2459T	p.R820L	TGAGCCGCCGTCT	.	92.0	25.0	115.0	0.0	.	584
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25416232	25416232	+	Missense_Mutation	SNP	C	C	T	rs140457030		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	RNF17	NM_001184993	exon19	c.C2536T	p.P846S	GGTGCTCCTGAAA	.	63.0	20.0	78.0	0.0	C|1.000;T|0.000	228
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237947437	237947437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	RYR2	NM_001035	exon90	c.C12425T	p.A4142V	GAAGCGCCAAACG	.	106.0	44.0	155.0	0.0	.	158
SCG2	7857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	224462635	224462635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SCG2	NM_003469	exon2	c.C1366A	p.P456T	TATATGGATTGGG	.	62.0	25.0	74.0	1.0	.	69
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38743417	38743417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SCN10A	NM_006514	exon26	c.G4570T	p.V1524F	TCATGACACATTC	.	97.0	28.0	111.0	0.0	.	99
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144891811	144891811	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SCRIB	NM_015356	exon14	c.C1608T	p.P536P	GCCCTCGGGCTCA	.	121.0	94.0	51.0	0.0	.	228
SLC16A12	387700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91196032	91196032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SLC16A12	NM_213606	exon7	c.G1073T	p.G358V	TCCATTCCCACGG	.	80.0	37.0	122.0	0.0	.	69
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1411361	1411361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SLC6A3	NM_001044	exon9	c.C1266A	p.S422R	CACGGCGCTGTCG	.	41.0	26.0	54.0	0.0	.	157
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	160134114	160134114	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SMC4	NM_005496	exon9	c.G1348T	p.E450X	GCCCTCGAGAAGG	.	307.0	119.0	374.0	0.0	.	291
SOCS6	9306	broad.mit.edu;ucsc.edu	37	18	67992706	67992706	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SOCS6	NM_004232	exon2	c.C802T	p.Q268X	GAGAGTCAGGTAG	.	160.0	91.0	173.0	1.0	.	721
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108431023	108431023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SORCS1	NM_001206572	exon16	c.T2161C	p.C721R	AGACACAGGGTTC	.	83.0	26.0	129.0	0.0	.	153
SORT1	6272	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109883462	109883462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SORT1	NM_002959	exon10	c.G1148T	p.G383V	ACAATGCCTCGAT	.	255.0	82.0	246.0	1.0	.	91
SSH1	54434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109192797	109192797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SSH1	NM_001161331	exon12	c.A1361G	p.Y454C	CCTTCATACTCAG	.	60.0	18.0	55.0	0.0	.	94
SSTR5	6755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1129560	1129560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	SSTR5	NM_001172560	exon2	c.C692A	p.A231E	GGGCGGCGGGCGT	.	63.0	46.0	70.0	0.0	.	522
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104077060	104077060	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	STAB2	NM_017564	exon26	c.C2883A	p.T961T	ACAAACCGGGAAA	.	183.0	59.0	141.0	0.0	.	104
SYT1	6857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	79689884	79689884	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	SYT1,NS,NS,0	SYT1	NM_001135805	exon8	c.C510T	p.P170P	ACTGCCCGCCTTG	.	71.0	28.0	107.0	1.0	.	655
TATDN3	128387	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	212965299	212965315	+	Frame_Shift_Del	DEL	CTGCCACCTCTCCGCCC	CTGCCACCTCTCCGCCC	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	CTGCCACCTCTCCGCCC	CTGCCACCTCTCCGCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TATDN3	NM_001146170	exon1	c.36_52del	p.12_18del	CTGTCACTGCCAC	.	141.0	25.0	182.0	0.0	.	22
TBX21	30009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	45820045	45820045	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TBX21	NM_013351	exon2	c.G561A	p.V187V	GTTTGTGGACGTG	.	56.0	7.0	93.0	0.0	.	90
TBX4	9496	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59560529	59560529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TBX4	NM_018488	exon8	c.C1290A	p.S430R	CTATAGCGTGCAG	.	76.0	27.0	106.0	2.0	.	227
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42608089	42608089	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TCF20	NM_181492	exon1	c.C3223G	p.P1075A	CGTTAGGGTCCCC	.	115.0	54.0	101.0	0.0	.	95
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120996428	120996428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TECTA	NM_005422	exon7	c.G1621A	p.V541M	ACTGTCGTGGACC	.	77.0	11.0	88.0	0.0	.	225
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70405127	70405127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TET1	NM_030625	exon4	c.A2641G	p.M881V	TCGTTAATGAAAG	.	62.0	24.0	71.0	0.0	.	663
TLR5	7100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223285710	223285710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TLR5	NM_003268	exon6	c.C664T	p.P222S	TGAATGGGTTCAT	.	129.0	33.0	112.0	0.0	.	525
TMPRSS11BNL	401136	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	69057145	69057145	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	NM_001129907	exon3	c.T222C	p.L74L	TTGGCTAAGATAG	.	42.0	8.0	50.0	0.0	.	.
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	50.0	22.0	87.0	0.0	C|1.000;|0.000	70225
TPK1	27010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	144150676	144150676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TPK1	NM_022445	exon9	c.G694T	p.D232Y	GGTGGTCAGTTTC	.	122.0	29.0	119.0	0.0	.	188
TPM1	7168	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	63335126	63335126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TPM1	NM_001018007	exon1	c.A98G	p.E33G	CGGCGGAAGACAG	.	165.0	30.0	151.0	1.0	.	90
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45820191	45820191	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	TRPM2	NM_003307	exon15	c.T2258A	p.L753Q	ATGGGCTGTGGCG	.	46.0	15.0	53.0	0.0	.	92
UQCRH	7388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46782226	46782226	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	UQCRH	NM_006004	exon4	c.G246T	p.V82V	CTAGGTGGCCCAC	.	228.0	118.0	217.0	0.0	.	90
VCP	7415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35068346	35068346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	VCP	NM_007126	exon2	c.G31A	p.D11N	ATAGGTCATCACC	.	93.0	34.0	57.0	0.0	.	228
WDR17	116966	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177041113	177041113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	WDR17	NM_170710	exon5	c.C475A	p.P159T	TCAGGACCAGATA	.	41.0	11.0	123.0	1.0	.	95
WDR33	55339	broad.mit.edu;bcgsc.ca	37	2	128495606	128495606	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	WDR33	NM_001006623	exon8	c.T747G	p.R249R	GTAACAACGGCAG	.	71.0	37.0	96.0	2.0	.	90
XRCC4	7518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82406962	82406962	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	XRCC4	NM_003401	exon3	c.G255C	p.T85T	ATACACGTTTAAT	.	93.0	20.0	111.0	0.0	.	229
ZBTB25	7597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64954580	64954580	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZBTB25	NM_006977	exon3	c.G369T	p.V123V	GGACTGCACAGTC	.	168.0	77.0	194.0	1.0	.	92
ZFP91	80829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58384203	58384203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZFP91	NM_053023	exon10	c.A1117G	p.I373V	GATTATATCTGTG	.	102.0	21.0	81.0	0.0	.	91
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53302982	53302982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF28	NM_006969	exon4	c.C2116G	p.L706V	ATACAAGGTTTGA	.	71.0	41.0	73.0	0.0	.	91
ZNF645	158506	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	22291221	22291221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF645	NM_152577	exon1	c.G113T	p.W38L	ACCGTTGGGGGGA	.	92.0	73.0	103.0	1.0	.	131
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53740851	53740851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF677	NM_182609	exon5	c.T1129C	p.C377R	CATTACATTTGTA	.	118.0	25.0	122.0	0.0	.	91
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57133835	57133835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF71	NM_021216	exon3	c.C1180A	p.R394S	ACGGGGCGCTCGT	.	55.0	28.0	56.0	0.0	.	91
ZNF74	7625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20749677	20749677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF74	NM_003426	exon2	c.C89G	p.S30W	ATATATCGGGTTG	.	138.0	62.0	161.0	0.0	.	91
ZNF829	374899	hgsc.bcm.edu;broad.mit.edu	37	19	37383281	37383281	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF829	NM_001171979	exon6	c.655delA	p.I219fs	GCTGAATAAAAGT	.	97.0	15.0	39.0	0.0	.	90
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57768554	57768554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	ZNF831	NM_178457	exon1	c.T2480C	p.V827A	TGAAAGTGGAGGA	.	140.0	62.0	81.0	0.0	.	126
FAM83E	54854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49104612	49104613	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	.	.	.	p.W397F	GGAGCCCCAGGAT	.	175.0	38.0	146.0	0.0	.	.
SMARCA2	6595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	2097384	2097385	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-CC-A7II-01A-11D-A33K-10	TCGA-CC-A7II-10A-01D-A33K-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	38404863-430b-43e1-9349-5e50adbe47bd	67f74191-95ad-4192-a479-4cd21b1cdfa4	.	.	.	.	.	.	TTCTTAGGGGAAA	.	84.0	38.0	50.0	0.0	.	.