Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA4	24	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94496008	94496008	+	Missense_Mutation	SNP	C	C	T	rs61750142		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ABCA4	NM_000350	exon29	c.G4328A	p.R1443H	AGGCAGCGGTTGC	.	36.0	5.0	66.0	1.0	.	162
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	175898867	175898867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAM29	NM_001130703	exon4	c.C2191A	p.Q731K	CCTCCCCAGAGTC	.	58.0	50.0	143.0	0.0	.	729
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	175898869	175898869	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAM29	NM_001130703	exon4	c.G2193A	p.Q731Q	TCCCCAGAGTCAA	.	58.0	50.0	142.0	1.0	.	729
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43860553	43860553	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAMTS20	NM_025003	exon9	c.A1269G	p.K423K	TGTAACTTTCATT	.	54.0	17.0	79.0	0.0	.	795
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7709399	7709399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADCY2	NM_020546	exon10	c.C1477T	p.R493C	TCGGTCCGCATGA	.	85.0	29.0	94.0	0.0	.	97
AGER	177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32149151	32149151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	AGER	NM_172197	exon9	c.G940A	p.A314T	TTGCCGCCTTTGC	.	57.0	21.0	55.0	0.0	.	226
AQP11	282679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77301269	77301269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	AQP11	NM_173039	exon1	c.A232T	p.T78S	ACCTGGACGCTGA	.	46.0	19.0	51.0	0.0	.	90
ARHGAP23	57636	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36619596	36619596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ARHGAP23	NM_001199417	exon6	c.G456A	p.M152I	TATCATGCCCAAG	.	33.0	5.0	75.0	0.0	.	205
ASTL	431705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96799781	96799781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ASTL	NM_001002036	exon4	c.T260G	p.L87R	GCTGACAGCAGTC	.	36.0	13.0	67.0	0.0	.	90
BAG5	9529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104026264	104026264	+	Missense_Mutation	SNP	T	T	C	rs143892215	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BAG5	NM_001015049	exon2	c.A1361G	p.D454G	TGCGGATCAACAG	.	98.0	44.0	121.0	0.0	T|1.000;A|0.000	229
BCAT1	586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25002861	25002861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BCAT1	NM_001178093	exon6	c.C569A	p.P190H	TTGGTAGGCTTCT	.	79.0	36.0	102.0	0.0	.	522
BSG	682	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	579633	579633	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BSG	NM_001728	exon3	c.G549A	p.L183L	CGCGCTGCCCGGC	.	25.0	9.0	46.0	0.0	.	90
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93720042	93720042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BTBD7	NM_001002860	exon7	c.G1703A	p.G568D	TAGATGCCAGCAT	.	62.0	20.0	61.0	0.0	.	91
BUD13	84811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116628662	116628662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BUD13	NM_032725	exon8	c.G1504A	p.A502T	TCTGGGCAAGCCT	.	35.0	13.0	42.0	0.0	.	154
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3739248	3739248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	C20orf27	NM_001039140	exon3	c.G172T	p.D58Y	TCTCATCAAAGTG	.	23.0	18.0	46.0	0.0	.	90
CACNA2D1	781	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	81964563	81964563	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CACNA2D1	NM_000722	exon3	c.A182T	p.Y61F	TTCTCATAAATCT	.	69.0	29.0	84.0	2.0	.	96
CACNB1	782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37347830	37347830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CACNB1	NM_199248	exon3	c.A188G	p.Y63C	CTGGTGTAGGACT	.	46.0	12.0	64.0	0.0	.	154
CALD1	800	broad.mit.edu;bcgsc.ca	37	7	134642970	134642970	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CALD1	NM_033138	exon11	c.1990delA	p.K664fs	GGTGTCAAATCGA	.	70.0	8.0	103.0	0.0	.	226
CALR	811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13054713	13054713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CALR	NM_004343	exon9	c.A1240G	p.K414E	CAGGCCAAGGACG	.	109.0	37.0	181.0	0.0	.	91
CARD8	22900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48734194	48734194	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CARD8	NM_001184900	exon6	c.G612A	p.E204E	TGTGACCTCATCC	.	98.0	68.0	135.0	0.0	.	227
CATSPERB	79820	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92058310	92058310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CATSPERB	NM_024764	exon23	c.A2746G	p.T916A	CCCGAGTGGAAAC	.	88.0	34.0	118.0	2.0	.	138
CCDC53	51019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102433674	102433674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_016053	exon5	c.A407G	p.Y136C	CTGGCATATCTTG	.	64.0	36.0	67.0	0.0	.	.
CCDC93	54520	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118703151	118703151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCDC93	NM_019044	exon17	c.C1304T	p.S435F	CCACTGGAGAGGG	.	27.0	9.0	36.0	0.0	.	154
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	2499459	2499459	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCNF	NM_001761	exon12	c.G1395T	p.G465G	GCACGGGCAGAGT	.	13.0	6.0	14.0	0.0	.	658
CCSER2	54462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	86131217	86131217	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_018999	exon2	c.G409T	p.E137X	ACAGAGGAGTTAA	.	163.0	72.0	173.0	0.0	.	.
CCT5	22948	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10258415	10258415	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCT5	NM_012073	exon5	c.A723C	p.K241N	GCCAAAAGTGAGC	.	121.0	20.0	147.0	1.0	.	92
CD68	968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7483022	7483022	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CD68	NM_001040059	exon1	c.G27C	p.G9G	CTCGGGGGCCCTG	.	22.0	12.0	55.0	0.0	.	90
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63511191	63511191	+	Silent	SNP	T	T	A	rs139333396	byfrequency;alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CDH7	NM_004361	exon7	c.T1125A	p.P375P	GCCCCCTGTGTTC	.	137.0	48.0	183.0	0.0	T|0.999;C|0.001	94
CHPT1	56994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102108302	102108302	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CHPT1	NM_020244	exon3	c.T442G	p.S148A	GGAGCTTCAATTG	.	28.0	10.0	38.0	0.0	.	90
CLCA1	1179	broad.mit.edu;bcgsc.ca	37	1	86939514	86939514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CLCA1	NM_001285	exon3	c.C406A	p.P136T	CTCACTCCTGATT	.	131.0	12.0	187.0	0.0	.	91
COG3	83548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46083887	46083887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	COG3	NM_031431	exon15	c.G1655T	p.G552V	TTCATGGAATGTG	.	83.0	30.0	200.0	0.0	.	154
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113418769	113418769	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CSMD3	NM_198123	exon35	c.C5793A	p.S1931S	AGGTAAGGAATCA	.	222.0	85.0	170.0	0.0	.	1132
CSTF2T	23283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	53458521	53458521	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CSTF2T	NM_015235	exon1	c.A789T	p.P263P	TGGAGCTGGAATT	.	48.0	23.0	49.0	0.0	.	91
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99270218	99270218	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CYP3A5	NM_001190484	exon4	c.C303A	p.V101V	TGTGAAGACAGAA	.	131.0	48.0	149.0	0.0	.	90
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155412382	155412382	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DCHS2	NM_001142552	exon1	c.G126A	p.R42R	CTGCGTCCTGGCG	.	63.0	14.0	86.0	0.0	.	94
DEPDC4	120863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	100660786	100660786	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DEPDC4	NM_152317	exon1	c.T69A	p.L23L	ACTGACAAGTCTA	.	60.0	21.0	77.0	0.0	.	90
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13917343	13917343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAH5	NM_001369	exon8	c.G998A	p.R333Q	GTGATTCGAATAT	.	63.0	26.0	64.0	0.0	.	182
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38858481	38858481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAH8	NM_001206927	exon58	c.T8527C	p.C2843R	CAAATATGTGAGA	.	62.0	30.0	87.0	0.0	.	615
DNAJA2	10294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47005262	47005262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAJA2	NM_005880	exon3	c.A361C	p.K121Q	TTCACTTGAGTGG	.	225.0	158.0	99.0	0.0	.	226
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225688292	225688292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DOCK10	NM_014689	exon28	c.C3109A	p.H1037N	TCACATGGTCGGA	.	89.0	44.0	91.0	0.0	.	92
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103018556	103018556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DYNC2H1	NM_001377	exon19	c.G2758A	p.D920N	GTGATTGATGATC	.	46.0	14.0	61.0	0.0	.	68
DYRK4	8798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4722680	4722680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DYRK4	NM_003845	exon13	c.G1324A	p.D442N	TTAGCAGATGAGA	.	174.0	60.0	228.0	1.0	.	360
EBNA1BP2	10969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43637963	43637963	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EBNA1BP2	NM_001159936	exon1	c.T130C	p.L44L	TGCTCAACTTTTG	.	49.0	13.0	93.0	0.0	.	90
EFHD2	79180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15753664	15753664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EFHD2	NM_024329	exon3	c.A475G	p.K159E	TTCCGCAAGGCGG	.	67.0	30.0	131.0	0.0	.	90
EMP2	2013	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	10631874	10631874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EMP2	NM_001424	exon4	c.G227T	p.C76F	GCGATGCAGCAGA	.	65.0	25.0	81.0	1.0	.	90
FAM179A	165186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29259514	29259514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FAM179A	NM_199280	exon18	c.C2526A	p.H842Q	CTTACACCCCATG	.	90.0	36.0	98.0	0.0	.	26
FAM220A	84792	hgsc.bcm.edu;bcgsc.ca	37	7	6370320	6370355	+	In_Frame_Del	DEL	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001037163	exon2	c.431_466del	p.144_156del	GGCGTGGCAGTCG	.	50.0	5.0	105.0	0.0	.	.
FAM69B	138311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	139612124	139612124	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FAM69B	NM_152421	exon2	c.C159A	p.Y53X	GTCCTACTCGGAG	.	27.0	15.0	28.0	0.0	.	90
FBXL18	80028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5541166	5541166	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FBXL18	NM_024963	exon3	c.A734T	p.E245V	ACCACCTCCTGGT	.	70.0	33.0	87.0	0.0	.	651
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14816776	14816776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FREM1	NM_144966	exon16	c.G2640T	p.E880D	ACCCACCTCAACA	.	40.0	25.0	63.0	0.0	.	138
GFI1B	8328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135862139	135862139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GFI1B	NM_001135031	exon2	c.C74T	p.P25L	ATGAACCGCTCTG	.	34.0	17.0	64.0	0.0	.	154
GIMAP1-GIMAP5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150416151	150416151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001199577	exon2	c.A16C	p.M6L	AGGAAGATGGCGA	.	49.0	22.0	73.0	0.0	.	.
GNE	10020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36246477	36246477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GNE	NM_001128227	exon3	c.A260G	p.N87S	TATGTATTTCTAA	.	33.0	22.0	47.0	0.0	.	115
GPR119	139760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129518890	129518890	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GPR119	NM_178471	exon1	c.A532T	p.M178L	GGAGCATGGCTGG	.	38.0	32.0	54.0	0.0	.	132
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154146446	154146446	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GPR149	NM_001038705	exon1	c.T959A	p.V320D	AGGACGACTTTTG	.	114.0	47.0	189.0	0.0	.	96
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42895442	42895442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GRXCR1	NM_001080476	exon1	c.T159A	p.D53E	GATAGATGGACTA	.	89.0	47.0	119.0	0.0	.	23
HPX	3263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6453022	6453022	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	HPX	NM_000613	exon9	c.A978G	p.V326V	GACATATACCTGG	.	42.0	20.0	45.0	0.0	.	90
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154862937	154862937	+	Missense_Mutation	SNP	G	G	T	rs141719500	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	HTR5A	NM_024012	exon1	c.G328T	p.G110C	CAGCTAGGTCGGA	.	14.0	6.0	26.0	0.0	G|1.000;C|0.000	155
IL12RB2	3595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67833704	67833704	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IL12RB2	NM_001559	exon10	c.T1455C	p.I485I	TCTGATTTCAGGT	.	47.0	6.0	53.0	0.0	.	92
IMPAD1	54928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57892756	57892756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IMPAD1	NM_017813	exon2	c.A388G	p.I130V	TATTAATCTGCAT	.	66.0	38.0	96.0	0.0	.	91
IRF4	3662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	393203	393203	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IRF4	NM_001195286	exon2	c.G51A	p.V17V	CGCGGTGAGCTGC	.	123.0	51.0	134.0	0.0	.	659
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68657110	68657110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ITGA11	NM_001004439	exon4	c.G292A	p.E98K	TCCGCTCGGACAC	.	123.0	28.0	118.0	0.0	.	538
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88707142	88707142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNK10	NM_138318	exon3	c.C425T	p.A142V	ACTCCCGCATTGT	.	29.0	12.0	49.0	0.0	.	95
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	138676396	138676396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNT1	NM_020822	exon26	c.T2959A	p.Y987N	AAGGACTACATGA	.	62.0	24.0	114.0	0.0	.	137
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6986628	6986628	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KDM4C	NM_001146696	exon11	c.G1705C	p.V569L	CCAGCGGTCCCCA	.	61.0	11.0	100.0	0.0	.	228
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55964415	55964415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KDR	NM_002253	exon17	c.G2398C	p.G800R	AGTAGCCTGTCTT	.	83.0	21.0	139.0	0.0	.	2298
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5462512	5462512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KIAA0947	NM_015325	exon13	c.G3065C	p.G1022A	GCTGTGGAGACAC	.	67.0	15.0	102.0	0.0	.	48
LGI2	55203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25005095	25005095	+	Missense_Mutation	SNP	A	A	G	rs150163590		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	LGI2	NM_018176	exon8	c.T1616C	p.I539T	ACAATTATATGTT	.	105.0	43.0	147.0	0.0	A|1.000;G|0.000	90
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117944848	117944848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAN1A2	NM_006699	exon2	c.C343T	p.H115Y	GCTGATCATGAGA	.	122.0	27.0	186.0	0.0	.	90
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210588377	210588377	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP2	NM_001039538	exon12	c.A1235T	p.K412M	GTTCCAAGGATAA	.	167.0	74.0	234.0	0.0	.	591
MAP3K14	9020	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	43366633	43366633	+	RNA	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP3K14	.	.	.	.	AAATGCGTTCTGA	.	135.0	77.0	115.0	0.0	.	1453
MAP7	9053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	136704840	136704840	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP7	NM_001198609	exon6	c.A672T	p.S224S	TGCAGATGAAGAG	.	46.0	35.0	84.0	0.0	.	90
MAPK7	5598	bcgsc.ca;mdanderson.org	37	17	19285377	19285377	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAPK7	NM_002749	exon5	c.G1761T	p.P587P	TGTGCCGGCCCCT	.	68.0	53.0	116.0	2.0	.	1402
MEX3C	51320	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48702884	48702884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MEX3C	NM_016626	exon2	c.A1817C	p.H606P	CAGTCGTGCTTTC	.	128.0	42.0	200.0	1.0	.	659
MFSD1	64747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	158525238	158525238	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MFSD1	NM_022736	exon5	c.A573C	p.G191G	ATTTGGAAGATTT	.	71.0	29.0	116.0	0.0	.	90
MIR122	406906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56118316	56118316	+	RNA	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	.	AGCAGAGCTGTGG	.	51.0	21.0	48.0	0.0	.	.
MIR490	574443	ucsc.edu;mdanderson.org	37	7	136587968	136587968	+	RNA	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	.	CCAGGTGGGTCAA	.	57.0	25.0	99.0	0.0	.	.
MN1	4330	broad.mit.edu;mdanderson.org	37	22	28196151	28196151	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MN1	NM_002430	exon1	c.C381T	p.C127C	GTGCAGGCACGAG	.	15.0	6.0	15.0	0.0	.	993
MRPL13	28998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	121444294	121444294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MRPL13	NM_014078	exon3	c.A221G	p.Q74R	ACTTTTTGTTCCC	.	207.0	21.0	138.0	0.0	.	226
MSGN1	343930	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	17998144	17998144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MSGN1	NM_001105569	exon1	c.G359A	p.R120K	AAGTCAGGATGTC	.	148.0	51.0	217.0	2.0	.	69
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9059979	9059979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MUC16	NM_024690	exon3	c.C27467A	p.S9156Y	GGAGAAGATGAGG	.	66.0	19.0	95.0	0.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9084032	9084032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MUC16	NM_024690	exon1	c.A7783T	p.S2595C	AAAGGCTCTCAGG	.	96.0	23.0	128.0	0.0	.	566
MYPOP	339344	broad.mit.edu;bcgsc.ca	37	19	46404577	46404577	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MYPOP	NM_001012643	exon2	c.A455T	p.Q152L	TAGCGCTGAGGGC	.	27.0	9.0	45.0	0.0	.	90
NFE2	4778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54686660	54686660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NFE2	NM_001261461	exon4	c.C620T	p.P207L	GAGGAGGGCTCTA	.	103.0	26.0	151.0	0.0	.	226
NMBR	4829	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	142409548	142409548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NMBR	NM_002511	exon1	c.C248A	p.S83Y	AGGTTAGAGATGA	.	36.0	29.0	74.0	2.0	.	946
NOVA2	4858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46457041	46457041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NOVA2	NM_002516	exon3	c.G393T	p.K131N	GACCTGCTTGGCT	.	67.0	25.0	140.0	0.0	.	226
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	34269611	34269611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NPAS3	NM_001164749	exon12	c.G2098T	p.G700W	GGCGGTGGGGGTG	.	74.0	16.0	92.0	0.0	.	93
NWD1	284434	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	16890277	16890277	+	Splice_Site	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NWD1	NM_001007525	exon12	c.2731+1G>C	.	ACACAGGTGAGAC	.	11.0	4.0	21.0	0.0	.	7
OLFML1	283298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7530924	7530924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OLFML1	NM_198474	exon3	c.A714C	p.K238N	AATCAAATATAAC	.	81.0	31.0	116.0	0.0	.	70
OR14I1	401994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248844793	248844793	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OR14I1	NM_001004734	exon1	c.G813T	p.V271V	AGCAATCACTAAA	.	65.0	14.0	64.0	0.0	.	46
OR8G2	26492	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124095697	124095697	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001007249	exon1	c.A300C	p.T100T	TGTGACAGAGAAG	.	68.0	21.0	103.0	0.0	.	.
OR8J1	219477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56127868	56127868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OR8J1	NM_001005205	exon1	c.C146A	p.T49N	CCCTCACCAGTGT	.	145.0	71.0	168.0	0.0	.	70
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	34558586	34558586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PARD3	NM_019619	exon22	c.A3427G	p.S1143G	CCTACCTGTCTAC	.	77.0	28.0	96.0	0.0	.	92
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	55582876	55582876	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PCDH15	NM_001142763	exon35	c.C4631A	p.S1544X	TTTGTTGATACTT	.	53.0	22.0	65.0	0.0	.	193
PCDHB1	29930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140433011	140433011	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PCDHB1	NM_013340	exon1	c.T1956A	p.A652A	ACCAGCTCTTTCC	.	81.0	33.0	108.0	0.0	.	90
PJA2	9867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	108714271	108714271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PJA2	NM_014819	exon4	c.A917G	p.H306R	CTTCCATGGTTCT	.	86.0	18.0	90.0	0.0	.	92
PNISR	25957	broad.mit.edu;bcgsc.ca	37	6	99856060	99856060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PNISR	NM_015491	exon6	c.A761G	p.E254G	ATTCTTTCTTTCT	.	87.0	7.0	86.0	0.0	.	22
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79322771	79322771	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PRUNE2	NM_015225	exon8	c.G4419A	p.E1473E	CTCTGGCTCTAGA	.	37.0	19.0	65.0	0.0	.	157
PSAT1	29968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	80923477	80923477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PSAT1	NM_021154	exon6	c.T718C	p.Y240H	TCCTTGTACAACA	.	31.0	18.0	40.0	0.0	.	91
PXDNL	137902	broad.mit.edu;bcgsc.ca	37	8	52233381	52233381	+	Missense_Mutation	SNP	C	C	G	rs201816215		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PXDNL	NM_144651	exon22	c.G4223C	p.R1408P	ATCCAGCGCTCCT	.	51.0	7.0	76.0	0.0	C|0.998;G|0.002	70
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	160243510	160243510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RAPGEF2	NM_014247	exon4	c.G382T	p.E128X	CTCTTGGAATTTA	.	71.0	53.0	152.0	0.0	.	637
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38794569	38794569	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RASGRP1	NM_005739	exon12	c.A1482C	p.E494D	TTCAAATTCTTCC	.	78.0	43.0	88.0	0.0	.	697
RASGRP4	115727	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38907809	38907809	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RASGRP4	NM_001146202	exon9	c.796-1G>T	.	GAGCCTCTAGGAA	.	16.0	9.0	62.0	0.0	.	660
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48954325	48954326	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RB1	NM_000321	exon16	c.1446_1447del	p.482_483del	CATTTTTCATATG	.	44.0	20.0	204.0	0.0	.	3784
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48954328	48954334	+	Frame_Shift_Del	DEL	TATGTCT	TATGTCT	-	rs5803433	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	TATGTCT	TATGTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RB1	NM_000321	exon16	c.1449_1455del	p.483_485del	TTTTCATATGTCT	.	36.0	20.0	206.0	0.0	.	3784
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	24579152	24579152	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RBBP6	NM_006910	exon16	c.T1992G	p.D664E	AAATGATTTTGCT	.	178.0	15.0	250.0	0.0	.	230
RBMXL2	27288	broad.mit.edu;mdanderson.org	37	11	7110658	7110658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RBMXL2	NM_014469	exon1	c.G307A	p.G103S	AGCCGCGGTCGCC	.	20.0	4.0	17.0	0.0	.	68
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	167666394	167666394	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RCSD1	NM_052862	exon6	c.A533C	p.Q178P	GGTCACAGTCAGA	.	167.0	12.0	167.0	0.0	.	517
RHOXF1	158800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119243261	119243261	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RHOXF1	NM_139282	exon4	c.445-1G>C	.	CCAAACCTACAAT	.	39.0	35.0	64.0	0.0	.	130
RNF175	285533	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154636682	154636682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RNF175	NM_173662	exon7	c.G763A	p.V255I	GATACACATGATT	.	49.0	17.0	72.0	1.0	.	47
RPS4Y1	6192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	2722723	2722724	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RPS4Y1	NM_001008	exon5	c.443_444insCT	p.R148fs	CCATCCGCTACCC	.	122.0	99.0	141.0	0.0	.	424
RYR3	6263	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34109089	34109089	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RYR3	NM_001036	exon75	c.A10529T	p.H3510L	TCCTCCATGGCTA	.	94.0	29.0	112.0	1.0	.	520
SGSM1	129049	bcgsc.ca;mdanderson.org	37	22	25270403	25270403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SGSM1	NM_133454	exon13	c.G1313A	p.S438N	TGGGCAGCACTTC	.	64.0	29.0	80.0	2.0	.	27
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22380971	22380971	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SLC17A6	NM_020346	exon4	c.T471G	p.A157A	CGGAGCTGCCATA	.	47.0	20.0	62.0	0.0	.	580
SLC27A3	11000	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153752329	153752329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SLC27A3	NM_024330	exon10	c.A2044G	p.K682E	ACCTTCAAACAGC	.	70.0	38.0	105.0	2.0	.	91
SSTR4	6754	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23016896	23016896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SSTR4	NM_001052	exon1	c.G776A	p.R259K	TCACCAGGCTGGT	.	33.0	10.0	44.0	0.0	.	522
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	107423271	107423271	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ST6GAL2	NM_032528	exon6	c.C1453T	p.L485L	AGAGTAGTGGGTG	.	75.0	35.0	89.0	0.0	.	191
STX10	8677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	13259885	13259886	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	STX10	NM_003765	exon4	c.321_322insT	p.V107fs	TGGGCTGACCATA	.	71.0	16.0	139.0	0.0	.	90
SUFU	51684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104268937	104268937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SUFU	NM_001178133	exon2	c.C194A	p.P65Q	GTGGCCCAGACCC	.	62.0	21.0	81.0	0.0	.	2246
TBC1D25	4943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48418242	48418242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TBC1D25	NM_002536	exon6	c.G946T	p.D316Y	CTGCACGACCTGC	.	63.0	53.0	77.0	0.0	.	131
TEX36	387718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127350498	127350498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001128202	exon2	c.G100T	p.A34S	ACGTAGCACTGGT	.	64.0	25.0	82.0	0.0	.	.
TMEM74	157753	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109796877	109796877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TMEM74	NM_153015	exon2	c.G451T	p.A151S	TGGCAGCCTCTTG	.	240.0	114.0	143.0	0.0	.	228
TRHR	7201	broad.mit.edu;mdanderson.org	37	8	110099964	110099964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRHR	NM_003301	exon1	c.T223A	p.L75M	ATGGTCTTGGTGG	.	131.0	10.0	79.0	1.0	.	620
TRIM26	7726	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30154170	30154170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRIM26	NM_001242783	exon9	c.T1103A	p.V368D	CAGTAGACCTTGC	.	65.0	25.0	61.0	1.0	.	206
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248024000	248024000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRIM58	NM_015431	exon2	c.A502G	p.T168A	AAAAAGACTGTCA	.	140.0	67.0	163.0	0.0	.	96
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73442764	73442764	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRPM3	NM_001007471	exon6	c.A972T	p.T324T	CTTACTTGTGTTT	.	81.0	20.0	80.0	0.0	.	521
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73479369	73479369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRPM3	NM_001007471	exon2	c.C236G	p.P79R	GTGCTGGGTATGA	.	38.0	12.0	51.0	0.0	.	521
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98552830	98552830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRRAP	NM_001244580	exon40	c.A5819T	p.Q1940L	GGCACCAGATGCT	.	69.0	35.0	83.0	0.0	.	923
UBC	7316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125397123	125397123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UBC	NM_021009	exon2	c.C1195T	p.P399S	CACTCGGCTCCAC	.	238.0	87.0	310.0	0.0	.	46
UGGT2	55757	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	13	96555132	96555132	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UGGT2	NM_020121	exon21	c.T2478C	p.D826D	AATTTTATCTCCA	.	94.0	20.0	83.0	0.0	.	92
UGT2A3	79799	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69816874	69816874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UGT2A3	NM_024743	exon1	c.G605T	p.R202I	GTCATTCTGTCTG	.	137.0	60.0	171.0	2.0	.	92
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216040477	216040477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	USH2A	NM_206933	exon44	c.A8717G	p.N2906S	ACACTGTTGTGTA	.	134.0	57.0	129.0	0.0	.	115
VPS13C	54832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62201321	62201321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	VPS13C	NM_020821	exon65	c.G8848A	p.G2950R	TACCCCCATTCTA	.	81.0	10.0	73.0	0.0	.	92
VPS8	23355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184646286	184646286	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	VPS8	NM_001009921	exon31	c.G2679C	p.E893D	TGAAGAGAGTCGA	.	96.0	44.0	116.0	0.0	.	91
ZCCHC2	54877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60242216	60242216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZCCHC2	NM_017742	exon13	c.C2902G	p.P968A	CCAGGCCCTGCCC	.	52.0	21.0	58.0	0.0	.	432
ZMYM1	79830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35578710	35578710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZMYM1	NM_024772	exon10	c.A1279G	p.N427D	AAAGACAATATGA	.	144.0	31.0	238.0	0.0	.	90
ZNF135	7694	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58579143	58579143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF135	NM_007134	exon4	c.A1363G	p.I455V	CGGAGGATTCACA	.	74.0	9.0	111.0	0.0	.	91
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97916530	97916530	+	RNA	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF518A	.	.	.	.	TCATATCCTTGTG	.	82.0	28.0	161.0	0.0	.	23
ZNF669	79862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	247264138	247264138	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF669	NM_024804	exon4	c.933delT	p.C311fs	TTTCCCACATTCC	.	92.0	22.0	85.0	0.0	.	90
ZNF680	340252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	63982871	63982872	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF680	NM_178558	exon4	c.260_261del	p.87_87del	ATGAGAATATATA	.	46.0	14.0	55.0	0.0	.	91
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149152414	149152414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF777	NM_015694	exon2	c.C700A	p.L234M	TCTCCAGATGGTT	.	66.0	26.0	73.0	0.0	.	136
ARMCX1	51309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100808723	100808724	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	p.L271I	CAATGCCCTTAAT	.	33.0	27.0	34.0	0.0	.	.