Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCB5 340273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 20698148 20698148 + Missense_Mutation SNP G G T rs199505251 alternate_allele TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ABCB5 NM_001163941 exon14 c.G1556T p.G519V TGGTAGGGGAAAA . 25.0 11.0 55.0 0.0 G|0.999;A|0.001 158 ABCB5 340273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 20762841 20762841 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ABCB5 NM_001163941 exon21 c.A2624T p.K875M CTGGAAAGGTAAA . 44.0 6.0 77.0 0.0 . 158 ABCC4 10257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 95822825 95822825 + Missense_Mutation SNP C C G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ABCC4 NM_005845 exon14 c.G1785C p.Q595H GAGGTACTGCAAC . 44.0 19.0 47.0 0.0 . 515 ABHD16A 7920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31660873 31660873 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ABHD16A NM_021160 exon7 c.A557T p.E186V AGGGGCTCTGGGC . 69.0 53.0 80.0 0.0 . 91 ADAMTSL1 92949 broad.mit.edu;bcgsc.ca 37 9 18776974 18776974 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ADAMTSL1 NM_001040272 exon19 c.A2747T p.Q916L ACGGCCAGCACCT . 69.0 54.0 89.0 2.0 . 230 ADCY3 109 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 25141705 25141705 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ADCY3 NM_004036 exon1 c.G152T p.R51L ATGAAGCGAGGCA . 138.0 41.0 146.0 1.0 . 94 ADORA3 140 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 112045693 112045693 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ADORA3 NM_020683 exon1 c.A284T p.H95L GAGGCGTGGGTAA . 201.0 84.0 339.0 2.0 . 156 AKAP17A 8227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 1718233 1718233 + Nonsense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . AKAP17A NM_005088 exon4 c.G1060T p.E354X CTGCAGGAGAAGA . 65.0 40.0 178.0 0.0 . 40 ALMS1 7840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 73678026 73678026 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ALMS1 NM_015120 exon8 c.G4369T p.A1457S TCAGTTGCTCCTG . 124.0 75.0 91.0 0.0 . 142 ANKHD1 54882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 139909162 139909162 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ANKHD1 NM_017747 exon29 c.A6631T p.N2211Y CTTTTCAATCACT . 93.0 41.0 123.0 0.0 . 185 ANO9 338440 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 428381 428381 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ANO9 NM_001012302 exon14 c.T1199A p.V400E AGGGCCACGCACC . 101.0 30.0 133.0 1.0 . 227 ARID1A 8289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 27107029 27107029 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ARID1A NM_006015 exon20 c.A6640T p.S2214C CAGGCCAGCCTCC . 90.0 38.0 124.0 0.0 . 584 ARX 170302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 25033712 25033712 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ARX NM_139058 exon1 c.A143T p.Q48L AAGCTCTGCGCGG . 48.0 40.0 132.0 0.0 . 130 ASH1L 55870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 155449286 155449286 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ASH1L NM_018489 exon3 c.A3375T p.A1125A AAAACCTGCATCA . 186.0 52.0 142.0 0.0 . 234 ASNS 440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 97484710 97484710 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ASNS NM_133436 exon9 c.A1092T p.G364G TCCTTCTCCAGAG . 45.0 13.0 32.0 0.0 . 91 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 31320038 31320038 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ASXL3 NM_030632 exon11 c.A2670T p.T890T AGGGACAGATAAT . 50.0 21.0 53.0 0.0 . 49 ATAD2 29028 broad.mit.edu;ucsc.edu 37 8 124361592 124361592 + Missense_Mutation SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ATAD2 NM_014109 exon14 c.T1739C p.I580T GGATCTATAGAAT . 127.0 18.0 73.0 1.0 . 92 ATM 472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 108114838 108114838 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ATM NM_000051 exon6 c.T655A p.C219S ATTCAGTGTGCGA . 39.0 14.0 54.0 0.0 . 3419 B3GALNT1 8706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 160803895 160803895 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . B3GALNT1 NM_001038628 exon8 c.A648T p.R216S AAATCCTCTATAG . 26.0 5.0 28.0 0.0 . 91 BRWD3 254065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 79989645 79989645 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . BRWD3 NM_153252 exon11 c.A1058T p.E353V ATTTTCTCAGGAA . 63.0 6.0 81.0 0.0 . 134 C17orf47 284083 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 56621179 56621179 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . C17orf47 NM_001038704 exon1 c.T369A p.V123V TGGACTAACTTTC . 165.0 103.0 158.0 1.0 . 135 C19orf69 100170765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 41949136 41949136 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_001130514 exon1 c.C62A p.P21H CACCCCCCCAGGC . 24.0 10.0 26.0 0.0 . . C8orf58 541565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 22458397 22458397 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . C8orf58 NM_001013842 exon2 c.G43T p.G15W GCAGATGGGGCTG . 64.0 42.0 76.0 0.0 . 91 C9orf84 158401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 114500592 114500592 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . C9orf84 NM_173521 exon10 c.T1193A p.I398K AAAAATATCTCAA . 63.0 29.0 43.0 0.0 . 92 CACNA1S 779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 201060850 201060850 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CACNA1S NM_000069 exon5 c.C612T p.L204L CATAAAGAGGACC . 220.0 32.0 211.0 0.0 . 94 CALCOCO1 57658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54118967 54118967 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CALCOCO1 NM_020898 exon2 c.A60T p.V20V CCGGGCTACATTG . 246.0 146.0 230.0 0.0 . 91 CARD11 84433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 2984108 2984108 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CARD11 NM_032415 exon5 c.A422T p.Q141L TTCATCTGCTGCT . 79.0 33.0 102.0 0.0 . 870 CCDC30 728621 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 43055011 43055011 + Missense_Mutation SNP G G A rs145632548 TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CCDC30 NM_001080850 exon9 c.G1240A p.V414I CAGAACGTAGATG . 46.0 18.0 67.0 0.0 G|1.000;A|0.000 90 CCDC42B 387885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113587689 113587689 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_001144872 exon1 c.C27T p.F9F ATATTTCCGACTG . 82.0 48.0 62.0 0.0 . . CCDC88C 440193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 91787522 91787522 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CCDC88C NM_001080414 exon13 c.A1469T p.E490V CTCTCCTCCAACA . 97.0 22.0 110.0 0.0 . 25 CCR1 1230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 46244963 46244963 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CCR1 NM_001295 exon2 c.T842A p.L281Q ACAGCCAGGTCCA . 131.0 77.0 114.0 0.0 . 660 CCR7 1236 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 38711550 38711550 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CCR7 NM_001838 exon3 c.T581A p.L194H TACAGGAGCTCTG . 139.0 76.0 120.0 2.0 . 659 CEP128 145508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 80997175 80997175 + Missense_Mutation SNP A A C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CEP128 NM_152446 exon21 c.T2936G p.L979R TCTTCTAGTAGGC . 68.0 38.0 71.0 0.0 . 91 CHADL 150356 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 41632548 41632548 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CHADL NM_138481 exon4 c.A2003T p.E668V ATGAGCTCCAGCT . 108.0 41.0 164.0 0.0 . 68 CHD7 55636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 61765635 61765635 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CHD7 NM_017780 exon31 c.C6351T p.L2117L CATCCTCAATGAC . 182.0 50.0 176.0 0.0 . 141 CHEK1 1111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 11 125514071 125514071 + Nonsense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CHEK1 NM_001244846 exon10 c.A1009T p.K337X ATTGATAAATTGG . 77.0 39.0 66.0 0.0 . 1509 CHL1 10752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 383657 383657 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CHL1 NM_001253388 exon5 c.G571T p.A191S TACTTCGCAAACG . 340.0 174.0 229.0 0.0 . 583 CLCN7 1186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 1511413 1511413 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CLCN7 NM_001287 exon4 c.A344T p.N115I GTGTGATTGATCC . 59.0 26.0 68.0 0.0 . 92 CMYA5 202333 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 79057643 79057643 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CMYA5 NM_153610 exon8 c.A11270T p.E3757V TGGTAGAAGAATA . 70.0 37.0 100.0 1.0 . 77 CNOT4 4850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 135095305 135095305 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CNOT4 NM_001190850 exon7 c.A781T p.K261X TATTTTTATCAAC . 63.0 30.0 78.0 0.0 . 90 COL6A3 1293 ucsc.edu;bcgsc.ca 37 2 238275833 238275833 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . COL6A3 NM_004369 exon11 c.T4997A p.V1666E GTGTCCACTATTT . 123.0 79.0 134.0 2.0 . 526 CRABP2 1382 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156670823 156670823 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CRABP2 NM_001199723 exon3 c.A92T p.K31M GCAATCTTCCTCA . 116.0 31.0 77.0 0.0 . 91 CSMD2 114784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 34038176 34038176 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CSMD2 NM_052896 exon51 c.C7698T p.G2566G CTCAGCGCCTGCC . 87.0 35.0 107.0 0.0 . 103 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41266101 41266101 + Missense_Mutation SNP C C A rs121913400 bycluster TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 CTNNB1,gallbladder,other,0 CTNNB1 NM_001098209 exon3 c.C98A p.S33Y TGGACTCTGGAAT . 145.0 44.0 139.0 0.0 . 24361 CUBN 8029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 16877186 16877186 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CUBN NM_001081 exon64 c.A10189T p.R3397X AGTCTCTGTTGCA . 242.0 68.0 80.0 0.0 . 166 CYLC1 1538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 83126557 83126557 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . CYLC1 NM_021118 exon3 c.G156A p.L52L ACCTTTGAAATCA . 58.0 35.0 99.0 0.0 . 112 DEF6 50619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 35280290 35280290 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . DEF6 NM_022047 exon4 c.A635T p.E212V ACCAGGAGCTCAT . 93.0 76.0 167.0 0.0 . 227 DNAH2 146754 broad.mit.edu;bcgsc.ca 37 17 7699791 7699791 + Missense_Mutation SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . DNAH2 NM_020877 exon49 c.A7684G p.I2562V TCCCAGATCATCC . 70.0 60.0 95.0 1.0 . 102 DNAH5 1767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 13830159 13830159 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . DNAH5 NM_001369 exon37 c.T6225A p.P2075P AAATTCAGGGTTC . 233.0 44.0 163.0 0.0 . 182 DTNB 1838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 25705696 25705696 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . DTNB NM_021907 exon10 c.A1048G p.M350V AGGACATGTGGCT . 111.0 76.0 96.0 0.0 . 137 EIF2B2 8892 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 75469779 75469779 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . EIF2B2 NM_014239 exon1 c.G86C p.R29P GGCCGCGCAGCTC . 222.0 67.0 202.0 2.0 . 91 EIF3F 8665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 8017529 8017529 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . EIF3F NM_003754 exon8 c.A1034T p.Q345L TCACACAGTCACA . 62.0 16.0 57.0 0.0 . 500 EIF4G1 1981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 184039550 184039550 + Missense_Mutation SNP C C G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . EIF4G1 NM_001194946 exon11 c.C1199G p.P400R CTGTGCCCATTGC . 155.0 96.0 195.0 0.0 . 344 ELFN2 114794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 37771020 37771020 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ELFN2 NM_052906 exon3 c.C555A p.N185K GAAGGGGTTGCCG . 118.0 43.0 181.0 0.0 . 70 ELL2 22936 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 95242487 95242487 + Splice_Site SNP C C G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ELL2 NM_012081 exon6 c.482-1G>C . TTTTCCCTAAAGT . 88.0 34.0 104.0 1.0 . 90 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 144943295 144943295 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . EPPK1 NM_031308 exon1 c.A4127T p.Q1376L GCCGCCTGGGGCA . 100.0 41.0 51.0 0.0 . 25 ERBB4 2066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 212812232 212812232 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ERBB4 NM_001042599 exon3 c.A344T p.Y115F AAGGCATATCGAT . 94.0 58.0 97.0 0.0 . 1461 ERCC6L 54821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 71425152 71425152 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ERCC6L NM_017669 exon2 c.C3465A p.N1155K GGACTTGTTTTCT . 49.0 39.0 59.0 0.0 . 93 ERN2 10595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 23711862 23711862 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ERN2 NM_033266 exon13 c.A1667T p.E556V TCACCTTCAGGGT . 59.0 34.0 58.0 0.0 . 322 FASN 2194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 80049390 80049390 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FASN NM_004104 exon9 c.G1200A p.V400V GATGTGCACGTTG . 128.0 36.0 157.0 0.0 . 90 FBLN2 2199 hgsc.bcm.edu;bcgsc.ca 37 3 13670761 13670761 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FBLN2 NM_001004019 exon13 c.T2811C p.F937F CGGCTTTCAGCGG . 107.0 60.0 112.0 0.0 . 91 FBLN2 2199 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 13670764 13670765 + Frame_Shift_Del DEL GC GC - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FBLN2 NM_001004019 exon13 c.2814_2815del p.938_939del CTTTCAGCGGGAT . 107.0 54.0 110.0 0.0 . 91 FBXL7 23194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 15928539 15928539 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FBXL7 NM_012304 exon3 c.A668T p.Y223F GCTGTTACAATAT . 246.0 53.0 153.0 0.0 . 228 FCRL1 115350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 157767574 157767574 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FCRL1 NM_001159397 exon8 c.A1034T p.Q345L TGCTGTTGTCTGC . 202.0 33.0 125.0 0.0 . 153 FLG 2312 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 152279631 152279631 + Silent SNP T T G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FLG NM_002016 exon3 c.A7731C p.S2577S GTCTTCTGAGTGT . 327.0 76.0 213.0 1.0 . 106 FMN1 342184 bcgsc.ca;mdanderson.org 37 15 33194233 33194233 + Missense_Mutation SNP T T A rs199507823 TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FMN1 NM_001103184 exon9 c.A2717T p.H906L AACTCATGTAAAA . 32.0 26.0 35.0 1.0 . 23 FOLR3 2352 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 71847147 71847147 + Missense_Mutation SNP A A C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . . . . . GCCCCGAGGACGA . 206.0 71.0 354.0 0.0 . . FOLR3 2352 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 71850783 71850783 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . . . . . TTTGACTCAGCCC . 128.0 54.0 174.0 0.0 . . FOXJ3 22887 ucsc.edu;bcgsc.ca 37 1 42657316 42657316 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FOXJ3 NM_001198851 exon11 c.A1009T p.T337S TCACTGTACTGCT . 153.0 52.0 226.0 2.0 . 228 FRK 2444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 116277657 116277657 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FRK NM_002031 exon5 c.A916T p.T306S ACTCTGTAATAAT . 31.0 12.0 63.0 0.0 . 948 FRYL 285527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 48529665 48529665 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FRYL NM_015030 exon53 c.A7146G p.V2382V AGAAAATACAACC . 50.0 27.0 41.0 0.0 . 69 FSCB 84075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 44975744 44975744 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . FSCB NM_032135 exon1 c.A447G p.E149E CACTTTTTCTACA . 167.0 107.0 146.0 0.0 . 587 GALK1 2584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 73760089 73760089 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GALK1 NM_000154 exon2 c.G244T p.A82S CATCGGCACCCTC . 57.0 17.0 69.0 0.0 . 90 GLI3 2737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 42088201 42088201 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GLI3 NM_000168 exon5 c.T568A p.F190I GGCTGAAGGGAGA . 167.0 55.0 240.0 0.0 . 1149 GLT8D2 83468 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 104396987 104396987 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GLT8D2 NM_031302 exon5 c.T210A p.N70K GATGCTATTGATG . 151.0 89.0 115.0 1.0 . 92 GLUL 2752 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 182353642 182353642 + Silent SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GLUL NM_001033056 exon7 c.T1020C p.R340R GGGGCGACGATCT . 200.0 41.0 136.0 0.0 . 90 GPR158 57512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 25701321 25701321 + Silent SNP T T G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GPR158 NM_020752 exon4 c.T1254G p.L418L ACGACTTGCCATC . 296.0 82.0 115.0 0.0 . 141 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 89971058 89971058 + Splice_Site SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GPR98 NM_032119 exon24 c.5111-2A>T . TCCACTAGGCTTG . 59.0 23.0 82.0 0.0 . 103 GRIN2A 2903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 10032379 10032379 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GRIN2A NM_000833 exon4 c.A444T p.G148G GGACGCTCCAAAC . 29.0 18.0 26.0 0.0 . 349 GRXCR1 389207 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 43032457 43032457 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . GRXCR1 NM_001080476 exon4 c.T773A p.M258K GCAAGATGTCCAT . 118.0 32.0 75.0 1.0 . 23 HAPLN2 60484 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 156594457 156594457 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . HAPLN2 NM_021817 exon6 c.T621A p.P207P CTACCCTGTGCTC . 30.0 7.0 31.0 0.0 . 90 HDHD3 81932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 116135994 116135994 + Missense_Mutation SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . HDHD3 NM_031219 exon2 c.C641T p.P214L GCCTGTGGGCCAA . 105.0 64.0 90.0 0.0 . 90 HECTD4 283450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 112685903 112685903 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_001109662 exon27 c.A3814T p.M1272L AAGGCATGTTGTT . 80.0 16.0 67.0 0.0 . . HIVEP2 3097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 143092423 143092423 + Silent SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . HIVEP2 NM_006734 exon5 c.G3453T p.L1151L CAGGTGCAGTGGC . 91.0 35.0 88.0 0.0 . 95 HMGXB3 22993 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 149431544 149431544 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . HMGXB3 NM_014983 exon20 c.A3668T p.D1223V CCTTCGACAATGC . 68.0 28.0 88.0 0.0 . 24 HYDIN 54768 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 71007743 71007743 + Missense_Mutation SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . HYDIN NM_001270974 exon34 c.C5218T p.P1740S CAACAGGCTTTTG . 191.0 23.0 162.0 0.0 . 92 IFIH1 64135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 163124064 163124064 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . IFIH1 NM_022168 exon15 c.A2823G p.V941V TTCTCTTACAATG . 34.0 15.0 43.0 0.0 . 91 IFNW1 3467 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 21141360 21141360 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . IFNW1 NM_002177 exon1 c.G210T p.Q70H CTGCAACTGGCTC . 53.0 42.0 82.0 1.0 . 90 IL18BP 10068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 71712350 71712350 + Silent SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . IL18BP NM_001145057 exon4 c.A339G p.R113R AGGCCGACTGTGG . 85.0 36.0 108.0 0.0 . 90 IPO7 10527 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 9462080 9462080 + Frame_Shift_Del DEL A A - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . IPO7 NM_006391 exon23 c.2774delA p.E925fs CTGGTGAAGATGG . 155.0 48.0 138.0 0.0 . 271 ITGA9 3680 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 37860441 37860441 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ITGA9 NM_002207 exon28 c.G3069C p.E1023D GAAAGAGAATGAA . 163.0 51.0 181.0 2.0 . 715 ITIH4 3700 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52861120 52861120 + Silent SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ITIH4 NM_001166449 exon3 c.T345C p.A115A GAGGCCAGCGCTC . 177.0 82.0 157.0 1.0 . 46 ITIH4 3700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52848087 52848087 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ITIH4 NM_002218 exon23 c.G2627T p.G876V AACTGGCCTGAGA . 99.0 27.0 111.0 0.0 . 46 ITSN2 50618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 24438936 24438936 + Silent SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ITSN2 NM_006277 exon32 c.T3972C p.D1324D TTTGAAATCTGTG . 87.0 16.0 60.0 0.0 . 539 KCNT2 343450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 196197434 196197434 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KCNT2 NM_198503 exon28 c.C3328G p.L1110V TTGGAAGGTAGGC . 87.0 17.0 60.0 0.0 . 159 KIAA1549 57670 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 138602195 138602195 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KIAA1549 NM_020910 exon2 c.C2177A p.S726Y TCGAGAGAATCAG . 63.0 24.0 71.0 1.0 . 369 KIF15 56992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 44879894 44879894 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KIF15 NM_020242 exon27 c.T3299A p.I1100N CCCTGATTCAGGA . 150.0 86.0 155.0 0.0 . 91 KIF19 124602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72351437 72351437 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KIF19 NM_153209 exon20 c.T2983C p.S995P GGATGCTCCCGGC . 53.0 10.0 52.0 0.0 . 90 KIF1B 23095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 10384901 10384901 + Missense_Mutation SNP A A C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KIF1B NM_015074 exon24 c.A2485C p.T829P ACTGTGACTGGCA . 83.0 35.0 78.0 0.0 . 93 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55593652 55593652 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 KIT,fibrous_tissue_and_uncertain_origin,gastrointestinal_stromal_tumour,0 KIT NM_000222 exon11 c.C1718A p.P573Q TAGACCCAACACA . 138.0 77.0 91.0 0.0 . 20166 KLRC4 8302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 10561527 10561527 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KLRC4 NM_013431 exon2 c.A270T p.T90T AACTATTGTTTTT . 317.0 180.0 344.0 0.0 . 90 KPRP 448834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152732782 152732782 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . KPRP NM_001025231 exon2 c.T718A p.Y240N GGCTCCTATGGGA . 146.0 35.0 80.0 0.0 . 95 LCE1B 353132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 152785001 152785001 + Missense_Mutation SNP C C G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LCE1B NM_178349 exon1 c.C79G p.P27A CTCACCCCTAGAT . 367.0 174.0 245.0 1.0 . 68 LDB2 9079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 16510279 16510279 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LDB2 NM_001290 exon7 c.G770A p.R257Q TTTCTCCGTTTGG . 108.0 52.0 97.0 0.0 . 90 LEP 3952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 127894794 127894794 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LEP NM_000230 exon3 c.T482A p.L161Q GGCAGCTGGACCT . 25.0 13.0 40.0 0.0 . 90 LGALS9B 284194 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 20358665 20358665 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LGALS9B NM_001042685 exon5 c.T491A p.F164Y TGGGAGAACGGCA . 479.0 121.0 679.0 1.0 . 23 LGR5 8549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 71960645 71960645 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LGR5 NM_003667 exon11 c.A1023T p.S341S GATCTCATCTCTT . 176.0 91.0 125.0 0.0 . 527 LMOD2 442721 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 123302237 123302237 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LMOD2 NM_207163 exon2 c.T597A p.I199I AGTGATTGAGGAC . 85.0 38.0 97.0 0.0 . 68 LOC100133286 0 broad.mit.edu;bcgsc.ca 37 21 37444696 37444696 + RNA SNP C C T rs2835265 byfrequency TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . . . . . TCTCTACGGGATT . 50.0 4.0 118.0 0.0 C|0.875;T|0.125 . LRIG2 9860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 113655151 113655151 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LRIG2 NM_014813 exon14 c.G1849T p.A617S ACTGGTGCCATGG . 79.0 17.0 123.0 0.0 . 229 LRRC48 83450 broad.mit.edu;bcgsc.ca 37 17 17910349 17910349 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LRRC48 NM_031294 exon12 c.G1214C p.C405S CTCAGTGCCGGGA . 193.0 40.0 183.0 2.0 . 46 LRRC4C 57689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 40137322 40137322 + Missense_Mutation SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LRRC4C NM_001258419 exon7 c.T521C p.L174S CGGCGCAAAGAAG . 76.0 18.0 52.0 0.0 . 521 LRRC6 23639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 133595953 133595953 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LRRC6 NM_012472 exon11 c.A1214T p.Q405L TTTGTTTGTTCTC . 289.0 44.0 95.0 0.0 . 92 LRRK1 79705 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 101606245 101606246 + Frame_Shift_Del DEL GT GT - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LRRK1 NM_024652 exon32 c.5603_5604del p.1868_1868del CTTCCAGTGTGCC . 70.0 57.0 107.0 0.0 . 602 LZTS1 11178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 20112615 20112615 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . LZTS1 NM_021020 exon1 c.C78T p.R26R GGACTTGCGCAGC . 105.0 27.0 99.0 0.0 . 91 MAATS1 89876 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 119462964 119462964 + Missense_Mutation SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_033364 exon14 c.G1823A p.R608Q AGCGGCGGGTACG . 125.0 36.0 120.0 1.0 . . MAP1B 4131 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 71494849 71494849 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MAP1B NM_005909 exon5 c.T5667C p.Y1889Y TGACTATGAGTCT . 48.0 27.0 54.0 0.0 . 155 MAP2K2 5605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 4110509 4110509 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MAP2K2 NM_030662 exon3 c.A448T p.M150L TCACCATGTGTTC . 17.0 8.0 59.0 0.0 . 510 MAP3K6 9064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 27684710 27684710 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MAP3K6 NM_004672 exon21 c.G2877A p.P959P GCGCTTCGGGGGG . 96.0 43.0 128.0 0.0 . 1523 MAPK10 5602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 86989078 86989078 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MAPK10 NM_002753 exon10 c.A833T p.Q278L CCTAGTTGTTCAA . 92.0 67.0 100.0 0.0 . 1402 MC2R 4158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 13885429 13885429 + Missense_Mutation SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MC2R NM_000529 exon2 c.T89C p.I30T AAAAATATCTCCT . 65.0 23.0 62.0 0.0 . 95 METTL1 4234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 58163625 58163625 + Missense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . METTL1 NM_005371 exon3 c.G389T p.G130V TGGAAGCCACCTG . 135.0 77.0 157.0 0.0 . 492 MFSD4 148808 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 205553249 205553249 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MFSD4 NM_181644 exon4 c.T857A p.L286Q CACACCTAGGTAG . 46.0 12.0 54.0 0.0 . 92 MFSD6 54842 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 191301292 191301292 + Silent SNP G G A rs115585862 byfrequency;alternate_allele TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MFSD6 NM_017694 exon3 c.G537A p.L179L TATCCTGCCAACA . 93.0 32.0 86.0 0.0 G|0.996;T|0.004 92 MGAM 8972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 141765270 141765270 + Splice_Site SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MGAM NM_004668 exon38 c.4618+2T>A . CATTGGTGCGTGG . 64.0 37.0 90.0 0.0 . 70 MGAT1 4245 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 180218676 180218676 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MGAT1 NM_001114617 exon3 c.G1296A p.A432A TGGGGGCGCCAGG . 213.0 96.0 282.0 0.0 . 91 MIR662 724032 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 819494 819494 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . . . . . TGCACCTGACCCC . 106.0 29.0 164.0 0.0 . . MLL 4297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 11 118347664 118347664 + Nonsense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MLL NM_001197104 exon4 c.C3301T p.R1101X GAAGAACGAGAAA . 121.0 44.0 151.0 0.0 . 1255 MRPL45 84311 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 36478426 36478426 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MRPL45 NM_032351 exon8 c.A869T p.E290V AACCAGAAGAAGA . 50.0 11.0 86.0 0.0 . 90 MSLN 10232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 813260 813260 + Missense_Mutation SNP C C T rs200684663 TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MSLN NM_005823 exon4 c.C113T p.A38V CCCTGGCTGGAGA . 169.0 49.0 228.0 0.0 C|0.999;T|0.000 91 MTF1 4520 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 38287832 38287832 + Missense_Mutation SNP T T G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MTF1 NM_005955 exon9 c.A1728C p.L576F ACCATTTAATATC . 163.0 78.0 233.0 0.0 . 92 MUC4 4585 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 195513058 195513058 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MUC4 NM_018406 exon2 c.T5393A p.V1798D GAGGAAACGTCGG . 1859.0 369.0 1820.0 1.0 . 90 MXD4 10608 broad.mit.edu;mdanderson.org 37 4 2252295 2252295 + Silent SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MXD4 NM_006454 exon6 c.G606T p.R202R GCCCAGCCGCCGG . 16.0 8.0 14.0 0.0 . 226 MYO10 4651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 16704767 16704767 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . MYO10 NM_012334 exon22 c.A2197T p.K733X CCAGTTTCTGTTC . 64.0 16.0 58.0 0.0 . 3 N4BP2L2 10443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 33092036 33092036 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . N4BP2L2 NM_014887 exon6 c.A1655G p.H552R CTTTTGTGTGATG . 77.0 43.0 74.0 0.0 . 68 NBEA 26960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 13 35923307 35923307 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NBEA NM_015678 exon37 c.T5966A p.L1989X TTATTTTGAACAG . 102.0 30.0 130.0 0.0 . 144 NCKAP5L 57701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 50190491 50190491 + Silent SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NCKAP5L NM_001037806 exon8 c.T1152C p.G384G TGGGGTACCCCCA . 37.0 8.0 43.0 0.0 . 68 NCR2 9436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 41309647 41309647 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NCR2 NM_004828 exon3 c.T510C p.S170S TCCATCTACCATC . 63.0 50.0 106.0 0.0 . 91 NCS1 23413 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 132980139 132980139 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NCS1 NM_014286 exon3 c.A118T p.S40C TGCCCCAGTGGGC . 139.0 39.0 123.0 0.0 . 90 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152539201 152539201 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NEB NM_004543 exon29 c.A2918T p.K973M GCTCGCTTTGCCT . 109.0 31.0 77.0 0.0 . 145 NEIL3 55247 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 178231110 178231110 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NEIL3 NM_018248 exon1 c.G3C p.M1I AGAGATGGTGGAA . 264.0 15.0 273.0 0.0 . 660 NEIL3 55247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 178256896 178256896 + Silent SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NEIL3 NM_018248 exon3 c.T333C p.Y111Y TAAATATAAAAAT . 91.0 79.0 108.0 0.0 . 660 NLRP2 55655 broad.mit.edu;bcgsc.ca 37 19 55496458 55496458 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NLRP2 NM_017852 exon7 c.T2074A p.C692S GACCTTTGTTCCA . 51.0 24.0 85.0 2.0 . 120 NME6 10201 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 48339972 48339972 + Frame_Shift_Del DEL T T - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NME6 NM_005793 exon2 c.59delA p.Q20fs GTGAGCTGGAGAG . 98.0 27.0 109.0 0.0 . 115 NOL12 79159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 38082401 38082401 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NOL12 NM_024313 exon1 c.T2A p.M1K CTGCTATGGGCCG . 50.0 20.0 66.0 0.0 . 90 NOS1 4842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 117669901 117669901 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NOS1 NM_001204218 exon23 c.C3373G p.P1125A AGGGCGGGAGGCG . 158.0 54.0 190.0 0.0 . 154 NOV 4856 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 120431542 120431542 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NOV NM_002514 exon4 c.T734A p.M245K TCTGCATGGTGCG . 192.0 75.0 100.0 1.0 . 228 NUF2 83540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 163295880 163295880 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NUF2 NM_145697 exon2 c.G39C p.E13D AGCTGAGATTGTG . 93.0 18.0 58.0 0.0 . 231 NUP153 9972 broad.mit.edu;ucsc.edu 37 6 17637902 17637902 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NUP153 NM_005124 exon16 c.G1946A p.G649E CCAATTCCACTAG . 14.0 5.0 16.0 0.0 . 637 NUP62 23636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50412454 50412454 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . NUP62 NM_153719 exon3 c.A611G p.Q204R GCTGGCTGTGTGG . 86.0 38.0 106.0 0.0 . 615 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 228563447 228563447 + Missense_Mutation SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . OBSCN NM_001271223 exon109 c.G25579A p.A8527T GTGTACGCGGATG . 171.0 41.0 184.0 0.0 . 403 OR11H4 390442 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 20711071 20711071 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . OR11H4 NM_001004479 exon1 c.T121C p.F41L TCATTGTTTTTGG . 174.0 54.0 150.0 1.0 . 69 OR4D9 390199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 59283045 59283045 + Silent SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . OR4D9 NM_001004711 exon1 c.C660A p.V220V CACGGTCATCTTG . 78.0 36.0 94.0 0.0 . 68 OR51D1 390038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4661967 4661967 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . OR51D1 NM_001004751 exon1 c.T947A p.L316H GGGTCCTCTGTAT . 100.0 25.0 67.0 0.0 . 68 OR5R1 219479 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 56185421 56185421 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . OR5R1 NM_001004744 exon1 c.T288A p.A96A TGCACAAGCATGG . 93.0 46.0 111.0 2.0 . 70 OR8K5 219453 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 11 55926911 55926911 + Nonsense_Mutation SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . OR8K5 NM_001004058 exon1 c.G883T p.E295X CCTCTTCGTTTCT . 39.0 13.0 81.0 0.0 . 72 P4HA1 5033 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 74803644 74803660 + Frame_Shift_Del DEL CCTCTTAGATACTCTGT CCTCTTAGATACTCTGT - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 CCTCTTAGATACTCTGT CCTCTTAGATACTCTGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . P4HA1 NM_001142596 exon9 c.1133_1148del p.378_383del CCCTTACCTCTTA . 24.0 13.0 76.0 0.0 . 69 P4HTM 54681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49042389 49042389 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . P4HTM NM_177938 exon6 c.A983T p.H328L ATGCCCACGTGGA . 102.0 58.0 110.0 0.0 . 205 PAN3 255967 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 28748529 28748529 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PAN3 NM_175854 exon2 c.A551T p.Q184L TGATGCAGGTATC . 29.0 20.0 33.0 0.0 . 69 PCDHAC1 56135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140308516 140308516 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PCDHAC1 NM_031882 exon1 c.A2039T p.Q680L CTGCCCAGAACTT . 52.0 24.0 79.0 0.0 . 28 PCDHB2 56133 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 140475814 140475814 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PCDHB2 NM_018936 exon1 c.A1440T p.R480S AGACAGAGACTCG . 164.0 58.0 249.0 0.0 . 96 PCOLCE2 26577 broad.mit.edu;ucsc.edu 37 3 142542413 142542413 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PCOLCE2 NM_013363 exon7 c.A910G p.T304A TCCCCGTCCGTCT . 99.0 20.0 112.0 2.0 . 93 PDE4DIP 9659 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 144854658 144854658 + Splice_Site SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PDE4DIP NM_001198834 exon43 c.6814-2A>T . TCTCCCTGGATAA . 145.0 9.0 126.0 0.0 . 663 PILRA 29992 ucsc.edu;bcgsc.ca 37 7 99987596 99987596 + Silent SNP C C G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PILRA NM_013439 exon3 c.C540G p.V180V CAGGGTCACACAG . 147.0 51.0 261.0 2.0 . 91 PITX1 5307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 134364795 134364795 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PITX1 NM_002653 exon3 c.C619G p.P207A ACAGCGGGCTCAT . 122.0 46.0 193.0 0.0 . 227 PLA2G2F 64600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 20474788 20474788 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PLA2G2F NM_022819 exon5 c.T530A p.L177H GCTTCCTCAATGT . 193.0 81.0 310.0 1.0 . 91 PLEKHG3 26030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 65209799 65209799 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PLEKHG3 NM_015549 exon15 c.A2870T p.Q957L CACCACAGCGTTT . 73.0 22.0 92.0 0.0 . 91 PLXNB1 5364 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 48457128 48457128 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PLXNB1 NM_001130082 exon19 c.A3658T p.S1220C GTGGGCTGGTCTC . 104.0 30.0 125.0 1.0 . 293 PMEPA1 56937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 56227157 56227157 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PMEPA1 NM_020182 exon4 c.A816T p.A272A GATGGCTGCGCTC . 37.0 12.0 27.0 0.0 . 227 PRDM16 63976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 3328344 3328344 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PRDM16 NM_022114 exon9 c.T1583A p.L528Q CGCCTCTGCTACC . 27.0 10.0 50.0 0.0 . 660 PRSS38 339501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 228003457 228003457 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PRSS38 NM_183062 exon1 c.T40A p.S14T GGGCCCTCTGCCC . 129.0 43.0 131.0 0.0 . 92 PSD2 84249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 139189340 139189340 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PSD2 NM_032289 exon2 c.A315T p.A105A GCTGGCAGAGGGG . 59.0 32.0 90.0 0.0 . 91 PSMB9 5698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 32826201 32826201 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PSMB9 NM_002800 exon5 c.A451T p.S151C TCCGGCAGCACCT . 75.0 31.0 94.0 0.0 . 90 PTCH2 8643 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 45307528 45307528 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . PTCH2 NM_001166292 exon2 c.T256A p.W86R CTACCCAGAGCTG . 140.0 56.0 228.0 1.0 . 851 PTEN 5728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 89712017 89712017 + Splice_Site SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 PTEN,NS,carcinoma,0 PTEN NM_000314 exon6 c.634+1G>T . CTTGCAGTAAGTG . 16.0 12.0 39.0 0.0 . 17735 PUF60 22827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 144899155 144899155 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_078480 exon11 c.C1305T p.S435S CTGCTCGCTCAGC . 128.0 10.0 111.0 0.0 . . RAB3D 9545 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 11447930 11447930 + Missense_Mutation SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RAB3D NM_004283 exon2 c.C146T p.P49L AAGGCGGGAGTGA . 71.0 53.0 259.0 2.0 . 653 RALGAPA2 57186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 20585826 20585826 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RALGAPA2 NM_020343 exon15 c.A2031T p.R677R TTTGCCTCGTTGC . 97.0 23.0 99.0 0.0 . 24 RAPGEF1 2889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 134525525 134525525 + Missense_Mutation SNP T T G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RAPGEF1 NM_198679 exon3 c.A309C p.Q103H CTGCCTTTGAGAC . 89.0 67.0 95.0 0.0 . 849 RFTN2 130132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 198508920 198508920 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RFTN2 NM_144629 exon3 c.G400A p.A134T TTTGTGCCTCAGA . 130.0 73.0 104.0 0.0 . 90 RHBDL3 162494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 30616020 30616020 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RHBDL3 NM_138328 exon4 c.A504T p.T168T GATCACAGTCACG . 180.0 106.0 246.0 0.0 . 91 RNF115 27246 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 145688137 145688137 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . RNF115 NM_014455 exon9 c.A832T p.T278S GACTCTACTCGGC . 242.0 61.0 166.0 0.0 . 91 ROBO1 6091 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 78717373 78717373 + Silent SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ROBO1 NM_002941 exon13 c.A1710T p.T570T GACATCTGTCACT . 116.0 34.0 112.0 1.0 . 67 SAGE1 55511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 134994077 134994077 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SAGE1 NM_018666 exon18 c.A2486T p.Y829F TAAAATATCAATT . 37.0 31.0 55.0 0.0 . 133 SAMD14 201191 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48191392 48191392 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SAMD14 NM_174920 exon10 c.G1078A p.G360S ACTGGCCCACCTG . 139.0 41.0 168.0 1.0 . 68 SCN11A 11280 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 38951586 38951586 + Frame_Shift_Del DEL G G - novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SCN11A NM_014139 exon8 c.1072delC p.Q358fs AATCTTGGGTCAT . 94.0 23.0 60.0 0.0 . 99 SCNN1D 6339 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 1223365 1223365 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SCNN1D NM_001130413 exon12 c.G1610T p.G537V CCGCCGGCGGGGA . 105.0 52.0 150.0 0.0 . 90 SDK1 221935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 4188918 4188918 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SDK1 NM_152744 exon30 c.T4448A p.L1483H GAGAGCTCCTGGT . 54.0 16.0 75.0 0.0 . 138 SDK1 221935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 4201422 4201422 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SDK1 NM_152744 exon32 c.A4734T p.P1578P AGTTCCAGGAGAG . 90.0 39.0 134.0 0.0 . 138 SEPT2 4735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 242283230 242283230 + Nonsense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SEPT2 NM_001008491 exon10 c.A760T p.R254X AAGGTCAGAGGCC . 162.0 44.0 123.0 0.0 . 68 SIAH1 6477 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 48395767 48395767 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SIAH1 NM_001006610 exon2 c.A666T p.L222F TAAGACTAACATG . 73.0 59.0 131.0 2.0 . 415 SLC12A7 10723 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 1053526 1053526 + Missense_Mutation SNP T T C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC12A7 NM_006598 exon23 c.A3098G p.D1033G TGCGCATCCTGGG . 211.0 36.0 164.0 0.0 . 138 SLC24A2 25769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 19786418 19786418 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC24A2 NM_001193288 exon1 c.A447T p.L149F AATGGCTAAGGCT . 33.0 27.0 31.0 0.0 . 517 SLC24A5 283652 broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 48427084 48427084 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC24A5 NM_205850 exon5 c.T493A p.S165T CAGGTCTCAACAC . 62.0 51.0 69.0 0.0 . 90 SLC36A3 285641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 150663626 150663626 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC36A3 NM_001145017 exon9 c.C1076A p.T359N TTGAGGGTGATGC . 111.0 49.0 145.0 0.0 . 93 SLC39A12 221074 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 18282139 18282139 + Silent SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC39A12 NM_001145195 exon9 c.G1452A p.V484V GCACGTGGGTCAT . 303.0 43.0 141.0 1.0 . 154 SLC39A4 55630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145640635 145640635 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC39A4 NM_130849 exon3 c.A643T p.S215C CCTCGCTGCTGTG . 273.0 34.0 161.0 0.0 . 90 SLC52A1 55065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 4936947 4936947 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_017986 exon3 c.T837A p.G279G GAAGGCACCATGG . 84.0 72.0 108.0 0.0 . . SLC8A1 6546 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 40655701 40655701 + Missense_Mutation SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SLC8A1 NM_001252624 exon1 c.T1720C p.Y574H TTTTATATGGAAC . 100.0 57.0 109.0 1.0 . 93 SMCR7L 54471 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 39909580 39909580 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SMCR7L NM_019008 exon6 c.G644T p.W215L ACCTGTGGTCATG . 72.0 29.0 112.0 0.0 . 90 SP7 121340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 53723037 53723037 + Silent SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_152860 exon2 c.T189A p.A63A TGGATAAGCATCC . 63.0 24.0 67.0 0.0 . . SPATA31C1 441452 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 9 90535600 90535600 + Missense_Mutation SNP G G C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_001145124 exon4 c.G778C p.D260H CCACTGGACACCG . 191.0 50.0 167.0 0.0 . . SSPO 23145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 149529876 149529876 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_198455 exon109 c.A15290T p.Q5097L AGAGCCAGTGTGA . 40.0 17.0 86.0 0.0 . . SULT1C4 27233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 108999919 108999919 + Nonsense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . SULT1C4 NM_006588 exon5 c.A568T p.K190X GAAGCCAAAGACA . 93.0 55.0 82.0 0.0 . 22 TBR1 10716 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 162279937 162279937 + Silent SNP C C A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TBR1 NM_006593 exon6 c.C1248A p.R416R GCCGCGCTCGCAG . 98.0 33.0 189.0 1.0 . 91 TBX20 57057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 35293206 35293206 + Missense_Mutation SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TBX20 NM_001077653 exon1 c.C26A p.P9H AGTTGGGGCTTGG . 29.0 12.0 46.0 0.0 . 90 TCF7 6932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 133480499 133480499 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TCF7 NM_201634 exon9 c.C742T p.P248S GGCTCGCCTAAGA . 107.0 38.0 218.0 0.0 . 90 TDRD5 163589 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 179562787 179562787 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TDRD5 NM_173533 exon3 c.T425A p.L142Q AGGACCTGTTGGC . 336.0 82.0 212.0 1.0 . 94 TEX35 84066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 178490806 178490806 + Splice_Site SNP G G T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_001170723 exon9 c.587-1G>T . AACCTAGCGCAGC . 189.0 38.0 149.0 0.0 . . TIAM2 26230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 155569180 155569180 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TIAM2 NM_012454 exon19 c.C3699T p.P1233P GAACCCCACCAAG . 83.0 69.0 125.0 0.0 . 93 TLE4 7091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 82333727 82333727 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TLE4 NM_007005 exon15 c.T1431A p.H477Q CCGGCATGCTCGC . 156.0 36.0 168.0 0.0 . 524 TMEM245 23731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 9 111853343 111853343 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_032012 exon5 c.A1009T p.R337X TTCGTCTGCCCAG . 90.0 57.0 66.0 0.0 . . TMTC3 160418 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 88548085 88548085 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TMTC3 NM_181783 exon4 c.A429T p.R143S TGGAAGAGCAGAA . 26.0 5.0 40.0 0.0 . 91 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7578461 7578461 + Missense_Mutation SNP C C A rs121912654 TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 TP53,head_neck,carcinoma,0 TP53 NM_000546 exon5 c.G469T p.V157F CGCGGACGCGGGT . 82.0 61.0 199.0 2.0 . 70225 TRMT2A 27037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 20102931 20102931 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TRMT2A NM_001257994 exon4 c.G748A p.G250R CCACCCCGACGCC . 58.0 21.0 75.0 0.0 . 153 TRPS1 7227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 116599393 116599393 + Missense_Mutation SNP A A C novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . TRPS1 NM_014112 exon5 c.T2535G p.N845K CTCCACATTGGGA . 117.0 19.0 51.0 0.0 . 229 UNC13C 440279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 54306838 54306838 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . UNC13C NM_001080534 exon1 c.T1738A p.S580T CTCCTGTCATCTT . 35.0 28.0 44.0 0.0 . 51 UNC5D 137970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 35542098 35542098 + Splice_Site SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . UNC5D NM_080872 exon6 c.752-2A>T . TCTCTCAGTGAAT . 85.0 16.0 109.0 0.0 . 96 USH2A 7399 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 216420052 216420052 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . USH2A NM_007123 exon13 c.A2684T p.Q895L CAGTGTTGAAAAT . 238.0 62.0 184.0 1.0 . 115 USP44 84101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 95927304 95927304 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . USP44 NM_032147 exon2 c.T729A p.D243E TACTTTATCTTTT . 72.0 19.0 63.0 0.0 . 658 VCAN 1462 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 82834673 82834673 + Missense_Mutation SNP G G A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . VCAN NM_004385 exon8 c.G5851A p.E1951K GCAAAAGAAGAAA . 56.0 14.0 66.0 0.0 . 238 VWA5B2 90113 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 183957516 183957516 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_138345 exon15 c.T2432A p.L811Q ACATGCTGATGGA . 99.0 24.0 105.0 1.0 . . WASL 8976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 123332584 123332584 + Silent SNP C C T rs138588268 byfrequency;alternate_allele TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . WASL NM_003941 exon9 c.G1164A p.P388P GCCAGGCGGGGGC . 26.0 10.0 40.0 0.0 C|0.999;A|0.001 90 WDR60 55112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 158672638 158672638 + Silent SNP A A G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . WDR60 NM_018051 exon5 c.A837G p.K279K TAGAAAAGAGAAA . 189.0 72.0 213.0 0.0 . 92 WHSC1L1 54904 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 38133854 38133854 + Silent SNP T T G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . WHSC1L1 NM_023034 exon23 c.A4032C p.A1344A GTGGTATGCTTTG . 321.0 80.0 248.0 1.0 . 658 XDH 7498 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 31571159 31571159 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . XDH NM_000379 exon28 c.A3122T p.Q1041L AGGCCTTGGCCCA . 188.0 121.0 212.0 2.0 . 158 ZBBX 79740 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 166960387 166960387 + Missense_Mutation SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ZBBX NM_001199201 exon21 c.G2299A p.D767N TGAAATCTGGGAA . 48.0 16.0 29.0 0.0 . 92 ZNF286A 57335 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 17 15619693 15619693 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ZNF286A NM_020652 exon6 c.A655T p.T219S TTCCATACACTTG . 96.0 49.0 86.0 1.0 . 90 ZNF470 388566 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 57088220 57088220 + Missense_Mutation SNP T T G novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ZNF470 NM_001001668 exon6 c.T423G p.C141W GAAATGTGAAGAC . 63.0 25.0 76.0 2.0 . 92 ZNF581 51545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56156253 56156253 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ZNF581 NM_016535 exon2 c.A316T p.S106C CGACACAGCATCA . 170.0 85.0 229.0 0.0 . 44 ZNF629 23361 broad.mit.edu;ucsc.edu;mdanderson.org 37 16 30793273 30793273 + Silent SNP C C T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_001080417 exon3 c.G2376A p.Q792Q TTTTTCCTGGGTG . 23.0 9.0 30.0 1.0 . . ZNF835 90485 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 57175003 57175003 + Missense_Mutation SNP A A T novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ZNF835 NM_001005850 exon2 c.T1564A p.C522S GTTGACAGGTTTC . 143.0 56.0 188.0 0.0 . 72 ZNF841 284371 broad.mit.edu;ucsc.edu 37 19 52570324 52570324 + Nonsense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . . NM_001136499 exon7 c.A811T p.R271X ACACTCTGAAGGC . 88.0 36.0 128.0 1.0 . . ZNF91 7644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 23543010 23543010 + Missense_Mutation SNP T T A novel TCGA-CC-A5UD-01A-11D-A28X-10 TCGA-CC-A5UD-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 6b1d8861-8326-40ac-b595-5862822407d8 c0bd90d9-4ca2-40af-af50-d23f00558550 . ZNF91 NM_003430 exon4 c.A2771T p.H924L GTAAGGTGTGAAG . 28.0 9.0 22.0 0.0 . 90