Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9027104	9027104	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	A2ML1	NM_144670	exon34	c.C4305T	p.V1435V	CAAGGTCTATGAC	.	97.0	26.0	92.0	0.0	.	93
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146029198	146029198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ABCE1	NM_002940	exon4	c.A221G	p.N74S	TTGTCAATCTACC	.	152.0	26.0	86.0	0.0	.	91
ACO1	48	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32418350	32418350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ACO1	NM_002197	exon6	c.A499G	p.M167V	CACAACATGCGGA	.	379.0	62.0	365.0	0.0	.	226
ADAM10	102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58902701	58902701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADAM10	NM_001110	exon14	c.G1820T	p.C607F	CTGGCACAAGTTG	.	115.0	23.0	96.0	0.0	.	227
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72468471	72468471	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADAMTS14	NM_139155	exon4	c.C807G	p.D269E	GGACGACTCGGTG	.	123.0	31.0	130.0	0.0	.	232
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64599095	64599095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADAMTS9	NM_182920	exon22	c.G3280C	p.E1094Q	TGGTCTCAGGGTC	.	162.0	34.0	153.0	0.0	.	230
ALPK1	80216	broad.mit.edu;bcgsc.ca	37	4	113352530	113352530	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ALPK1	NM_001102406	exon11	c.A1827G	p.K609K	CAGAAAAGAGCCT	.	163.0	7.0	165.0	1.0	.	337
AMER2	219287	broad.mit.edu;mdanderson.org	37	13	25743761	25743761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_152704	exon1	c.A1997G	p.D666G	GCACTGTCGTGGC	.	65.0	14.0	103.0	1.0	.	.
ANKRD18A	253650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	38596174	38596174	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ANKRD18A	NM_147195	exon9	c.C1163A	p.S388X	TGTTGCGAATACC	.	1008.0	189.0	698.0	1.0	.	92
APCDD1L	164284	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57035986	57035986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	APCDD1L	NM_153360	exon4	c.C1366A	p.H456N	CCCCATGACAGAG	.	74.0	18.0	84.0	1.0	.	227
ARHGEF33	100271715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39158314	39158314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ARHGEF33	NM_001145451	exon5	c.C427T	p.R143C	CCTTTTCGTTCTA	.	232.0	38.0	173.0	0.0	.	46
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	27099008	27099008	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ARID1A	NM_006015	exon13	c.C3424T	p.Q1142X	TCTATGCAGGGGC	.	248.0	45.0	207.0	0.0	.	584
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu	37	1	160104352	160104352	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ATP1A2	NM_000702	exon14	c.G1906T	p.E636X	GGTAACGAGACTG	.	223.0	11.0	196.0	0.0	.	518
ATP1B4	23439	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119505028	119505028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ATP1B4	NM_001142447	exon4	c.G525T	p.W175C	CACTTGGCAGCAT	.	146.0	55.0	96.0	1.0	.	131
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	60688381	60688381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	BCL11A	NM_018014	exon4	c.C1666A	p.Q556K	AGTGCTGCATGGA	.	58.0	9.0	73.0	0.0	.	1149
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	50533357	50533357	+	Silent	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C10orf71	NM_001135196	exon3	c.C2767A	p.R923R	AACACACGGGGCA	.	90.0	22.0	75.0	0.0	.	90
C1orf213	148898	ucsc.edu;mdanderson.org	37	1	23697598	23697598	+	RNA	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C1orf213	.	.	.	.	AGCCCTTCTTTGT	.	588.0	98.0	526.0	1.0	.	68
C1orf68	100129271	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152692577	152692577	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C1orf68	NM_001024679	exon1	c.A580T	p.N194Y	AACTGCAACACAG	.	330.0	47.0	263.0	1.0	.	69
C20orf173	140873	ucsc.edu;bcgsc.ca	37	20	34117117	34117117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001145350	exon2	c.A86G	p.E29G	GCTGATTCAGGTG	.	38.0	4.0	55.0	0.0	.	.
CAPN9	10753	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230914798	230914798	+	Missense_Mutation	SNP	G	G	A	rs145648359		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CAPN9	NM_006615	exon9	c.G1033A	p.A345T	GAAGACGCGATCC	.	116.0	23.0	85.0	1.0	G|1.000;A|0.000	91
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42787466	42787466	+	Silent	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CCDC13	NM_144719	exon7	c.G774T	p.S258S	CCCTGGCGAAGAT	.	107.0	14.0	77.0	0.0	.	91
CCDC93	54520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118716046	118716046	+	Silent	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CCDC93	NM_019044	exon12	c.A900C	p.L300L	AGCTGATAGCTCA	.	365.0	73.0	282.0	0.0	.	154
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35823581	35823581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CD22	NM_001185100	exon3	c.T166C	p.F56L	GAAAGCTTCATCC	.	230.0	44.0	165.0	0.0	.	526
CIC	23152	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	42797899	42797899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CIC	NM_015125	exon16	c.C3951A	p.D1317E	CGGGGACACCCCG	.	29.0	6.0	39.0	0.0	.	591
CIC	23152	broad.mit.edu;ucsc.edu	37	19	42797912	42797912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CIC	NM_015125	exon16	c.A3964C	p.K1322Q	GAGCGCAAGGAGG	.	24.0	4.0	49.0	0.0	.	591
CNNM2	54805	ucsc.edu;bcgsc.ca	37	10	104679476	104679476	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CNNM2	NM_199076	exon1	c.A1239G	p.K413K	GGAAAAACTGCTG	.	52.0	5.0	51.0	0.0	.	515
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	75853093	75853093	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	COL12A1	NM_004370	exon26	c.A4702T	p.R1568X	GAGGTCTGGGTAA	.	214.0	32.0	128.0	0.0	.	142
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	211456588	211456589	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CPS1	NM_001122633	exon11	c.999_1000insA	p.N333fs	CACAAACAAACAG	.	261.0	50.0	179.0	0.0	.	162
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34003090	34003090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CSMD2	NM_052896	exon60	c.C9319A	p.R3107S	ACCTGCGTGGAGA	.	105.0	24.0	91.0	1.0	.	103
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34003089	34003089	+	Missense_Mutation	SNP	C	C	T	rs149230645		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CSMD2	NM_052896	exon60	c.G9320A	p.R3107H	AACCTGCGTGGAG	.	106.0	25.0	90.0	0.0	C|1.000;T|0.000	103
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75983035	75983035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CSPG4	NM_001897	exon3	c.C371T	p.S124L	TCGACTGACAACG	.	260.0	58.0	225.0	0.0	.	229
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274899	41274899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CTNNB1	NM_001098209	exon8	c.G1149C	p.W383C	TCTTTGGACTCTC	.	260.0	56.0	194.0	0.0	.	24361
DDHD1	80821	broad.mit.edu;bcgsc.ca	37	14	53522391	53522391	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DDHD1	NM_001160147	exon11	c.A2253G	p.K751K	GCTTGCTTTGCCT	.	137.0	6.0	102.0	0.0	.	92
DENND4C	55667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19325935	19325935	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DENND4C	NM_017925	exon14	c.1954-2A>G	.	TTTTCTAGTTGTT	.	410.0	74.0	289.0	1.0	.	92
DERL1	79139	ucsc.edu;bcgsc.ca	37	8	124054284	124054284	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DERL1	NM_001134671	exon1	c.T79C	p.L27L	CGACCAAGGGCAC	.	47.0	6.0	36.0	0.0	.	226
DLX6	1750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96639126	96639126	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DLX6	NM_005222	exon3	c.A649T	p.N217Y	TTTCAGAACAAAC	.	246.0	33.0	190.0	0.0	.	92
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57438657	57438657	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DNAH12	NM_178504	exon25	c.T3630C	p.N1210N	ATTGCAATTAATG	.	134.0	30.0	112.0	0.0	.	47
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57443514	57443514	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DNAH12	NM_178504	exon22	c.G3201A	p.K1067K	GAGCCACTTTTCC	.	175.0	42.0	127.0	0.0	.	47
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21031159	21031159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DNAH3	NM_017539	exon41	c.G5809A	p.E1937K	CTAATTCCATTTC	.	434.0	93.0	481.0	0.0	.	167
EI24	9538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125448940	125448940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EI24	NM_001007277	exon7	c.G537T	p.L179F	CCTTTTGCTGCAG	.	179.0	15.0	152.0	0.0	.	91
ELMOD1	55531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	107518278	107518278	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_018712	exon7	c.505delC	p.P169fs	GATGATCCTAAAA	.	173.0	41.0	154.0	0.0	.	.
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43532588	43532588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EPG5	NM_020964	exon3	c.A1030G	p.K344E	AAACTTTCACTTG	.	430.0	71.0	341.0	0.0	.	580
EPHX2	2053	ucsc.edu;bcgsc.ca	37	8	27361175	27361175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EPHX2	NM_001979	exon3	c.T241C	p.C81R	AAAGTCTGCCTCC	.	43.0	5.0	47.0	0.0	.	91
EPM2A	7957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146007291	146007291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EPM2A	NM_005670	exon2	c.A443C	p.N148T	GCAATATTAAAAT	.	227.0	36.0	196.0	1.0	.	415
EVC2	132884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5578157	5578157	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EVC2	NM_147127	exon18	c.C3082T	p.L1028L	CCTCCAGCTTCCT	.	54.0	20.0	47.0	0.0	.	155
EVX2	344191	broad.mit.edu;bcgsc.ca	37	2	176948182	176948182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EVX2	NM_001080458	exon1	c.C323A	p.A108E	GCGGCCGCCTCTG	.	57.0	10.0	61.0	1.0	.	70
FAM134C	162427	ucsc.edu;bcgsc.ca	37	17	40737144	40737144	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FAM134C	NM_178126	exon6	c.A726G	p.Q242Q	CTTACATTGTCTC	.	49.0	4.0	47.0	0.0	.	70
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177250229	177250229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FAM5B	NM_021165	exon8	c.T1917A	p.F639L	TTTCTTTGAGACA	.	259.0	41.0	177.0	0.0	.	28
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144812668	144812668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FAM83H	NM_198488	exon2	c.C85T	p.R29C	CCAGGCGGTAGTA	.	29.0	11.0	30.0	0.0	.	92
FBXL19	54620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30939817	30939817	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FBXL19	NM_001099784	exon6	c.G717A	p.K239K	CCTGAAGAAGGTG	.	121.0	18.0	116.0	1.0	.	661
GAD1	2571	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171685987	171685987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GAD1	NM_000817	exon4	c.T148G	p.F50V	ATAGGCTTCTTGC	.	94.0	20.0	97.0	0.0	.	91
GNL2	29889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	38034740	38034740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GNL2	NM_013285	exon13	c.C1580A	p.T527K	ACTCGTGTGAGAA	.	369.0	15.0	344.0	0.0	.	91
GPM6A	2823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	176556173	176556173	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GPM6A	NM_201591	exon7	c.C720T	p.A240A	CACATAGGCCCAG	.	216.0	41.0	141.0	0.0	.	90
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154055824	154055824	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GPR149	NM_001038705	exon4	c.G1860A	p.E620E	AAGAACCTCCAAG	.	513.0	49.0	457.0	0.0	.	96
HAS2	3037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	122627257	122627257	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HAS2	NM_005328	exon4	c.T751A	p.W251R	AGATCCAGGAATC	.	174.0	28.0	94.0	0.0	.	236
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18833076	18833076	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HDAC9	NM_178423	exon17	c.2313+1G>A	.	CTGAAGGTGAGGT	.	157.0	33.0	155.0	0.0	.	227
HHLA1	10086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	133090141	133090141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001145095	exon11	c.G1003A	p.A335T	TCTGAGCCCAGGG	.	220.0	23.0	130.0	0.0	.	.
HK2	3099	broad.mit.edu;mdanderson.org	37	2	75107697	75107697	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HK2	NM_000189	exon10	c.1570+1G>T	.	GCACAGGTACACG	.	84.0	13.0	87.0	0.0	.	252
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22222416	22222416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HSPG2	NM_005529	exon3	c.G243A	p.M81I	CTTACCCATCTGG	.	94.0	18.0	108.0	0.0	.	141
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154862969	154862969	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HTR5A	NM_024012	exon1	c.C360T	p.C120C	CGCGTGCGACGTG	.	40.0	8.0	33.0	0.0	.	155
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99251033	99251033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IGF1R	NM_000875	exon2	c.T337C	p.Y113H	CTCTTCTACAACT	.	183.0	28.0	139.0	0.0	.	1490
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99459277	99459277	+	Missense_Mutation	SNP	A	A	G	rs144533252		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IGF1R	NM_000875	exon9	c.A1913G	p.N638S	TGCCCAACGGCAA	.	269.0	35.0	233.0	1.0	A|1.000;G|0.000	1490
IMPAD1	54928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57876515	57876515	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IMPAD1	NM_017813	exon5	c.C917G	p.A306G	AAGATGGCATTAC	.	320.0	69.0	260.0	0.0	.	91
INPP5F	22876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121556404	121556404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	INPP5F	NM_014937	exon7	c.C847T	p.R283C	ATTTCACGCCGAA	.	319.0	67.0	211.0	0.0	.	229
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123092919	123092919	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IQUB	NM_178827	exon13	c.T2254A	p.F752I	GAGAAAAATAGTT	.	359.0	76.0	300.0	0.0	.	156
IRF4	3662	broad.mit.edu;mdanderson.org	37	6	393366	393366	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IRF4	NM_001195286	exon2	c.A214T	p.K72X	CTCTTCAAGGTCT	.	33.0	6.0	37.0	0.0	.	659
KHNYN	23351	broad.mit.edu;bcgsc.ca	37	14	24905604	24905604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KHNYN	NM_015299	exon7	c.T1696G	p.F566V	CTGCCCTTTACCT	.	105.0	10.0	102.0	0.0	.	93
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105538197	105538197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIAA1033	NM_015275	exon21	c.C2143A	p.P715T	CTGAATCCAATTC	.	422.0	75.0	367.0	0.0	.	91
KIF18A	81930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	28116264	28116264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIF18A	NM_031217	exon3	c.A409C	p.M137L	GTAACATTGTTAG	.	277.0	46.0	226.0	0.0	.	92
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	134339676	134339676	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	KY,NS,carcinoma,0	KY	NM_178554	exon7	c.C507T	p.D169D	CAGTTCGTCTAGG	.	155.0	36.0	110.0	1.0	.	24
LILRB4	11006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55175420	55175420	+	Silent	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LILRB4	NM_006847	exon3	c.A279T	p.A93A	CTATGCAGGGAGA	.	549.0	102.0	557.0	0.0	.	93
LRG1	116844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4538064	4538064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LRG1	NM_052972	exon2	c.A932G	p.Y311C	CAACGATAGAGGT	.	101.0	15.0	91.0	0.0	.	91
LRRC28	123355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99796167	99796167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LRRC28	NM_144598	exon2	c.C5T	p.A2V	TCATGGCGTCCGA	.	191.0	19.0	141.0	0.0	.	90
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33174004	33174004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LTBP1	NM_206943	exon2	c.G557C	p.C186S	AGAGGTGCACCAA	.	189.0	38.0	144.0	0.0	.	230
MAP4	4134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47957722	47957722	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MAP4	NM_001134364	exon7	c.A1595C	p.K532T	ACGTTCTTGATGA	.	393.0	85.0	345.0	0.0	.	93
MB21D2	151963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	192516896	192516896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MB21D2	NM_178496	exon2	c.T755A	p.L252H	TCCATGAGCCAGC	.	99.0	19.0	107.0	0.0	.	70
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	149247524	149247524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MBD5	NM_018328	exon12	c.C3624A	p.N1208K	GCGAAACAGGTGG	.	109.0	11.0	108.0	0.0	.	95
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40572166	40572166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MED14	NM_004229	exon6	c.G781A	p.D261N	ATTTACCTCCTGT	.	357.0	140.0	268.0	0.0	.	289
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128119312	128119312	+	Silent	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	METTL2B	NM_018396	exon3	c.T303G	p.P101P	ATTCCCTGAGCTG	.	713.0	130.0	565.0	0.0	.	23
MGEA5	10724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103550822	103550822	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MGEA5	NM_012215	exon14	c.T2285A	p.L762H	AGGCTGAGGGAAA	.	289.0	60.0	234.0	0.0	.	93
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	60744895	60744895	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MRC2	NM_006039	exon6	c.1117+1G>T	.	CTCCAGGTGAGCC	.	32.0	7.0	34.0	0.0	.	117
MROH5	389690	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	142445230	142445230	+	RNA	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	.	CACCAGGCAGGTC	.	250.0	38.0	215.0	2.0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9020787	9020787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MUC16	NM_024690	exon20	c.G37315T	p.G12439C	TGCAGCCAGAGTA	.	327.0	71.0	325.0	0.0	.	566
NAGLU	4669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40696106	40696106	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NAGLU	NM_000263	exon6	c.G2082A	p.Q694Q	CCAACAGCACCAG	.	63.0	16.0	70.0	0.0	.	90
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71068895	71068895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NCOA2	NM_006540	exon11	c.A1705G	p.M569V	GATTCATATTAAC	.	164.0	28.0	153.0	0.0	.	639
NLRP1	22861	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5433881	5433881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NLRP1	NM_001033053	exon12	c.T3452C	p.V1151A	CCTGCCACCATCC	.	105.0	16.0	121.0	1.0	.	274
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15297927	15297927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NOTCH3	NM_000435	exon11	c.C1829A	p.S610Y	GTCCCAGAAGGGC	.	173.0	35.0	216.0	0.0	.	855
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228465514	228465514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OBSCN	NM_001271223	exon30	c.T8101C	p.F2701L	ATCCAATTTGTAG	.	328.0	34.0	230.0	0.0	.	403
OR10Z1	128368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576423	158576423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR10Z1	NM_001004478	exon1	c.C195A	p.F65L	TTCCTTCCTATCC	.	522.0	86.0	443.0	1.0	.	70
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248263522	248263522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR2L13	NM_175911	exon3	c.C845A	p.P282H	TTACCCCCATGCT	.	181.0	25.0	113.0	0.0	.	70
OR4N5	390437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20612277	20612277	+	Missense_Mutation	SNP	G	G	A	rs139546094		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR4N5	NM_001004724	exon1	c.G383A	p.R128Q	TCTGCCGGCCTTT	.	416.0	100.0	347.0	0.0	G|1.000;A|0.000	69
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158517119	158517119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR6Y1	NM_001005189	exon1	c.G777T	p.M259I	AAGTGTCATGGAA	.	184.0	32.0	146.0	0.0	.	69
PAN3	255967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28794510	28794510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PAN3	NM_175854	exon6	c.C995T	p.A332V	GATTAGCGCCAGG	.	127.0	27.0	86.0	0.0	.	69
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237567	140237567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PCDHA10	NM_031859	exon1	c.G1934T	p.R645L	GCCAGCGCCTACT	.	121.0	26.0	211.0	0.0	.	99
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140755534	140755534	+	Silent	SNP	G	G	A	rs200712802	byfrequency	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PCDHGA6	NM_018919	exon1	c.G1884A	p.T628T	GCGCACGGCGCGC	.	108.0	19.0	129.0	0.0	G|0.996;A|0.004	67
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169820663	169820663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PHC3	NM_024947	exon13	c.A2528T	p.N843I	CTTTGATTATCAG	.	297.0	44.0	248.0	0.0	.	227
PHF16	9767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46844301	46844301	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PHF16	NM_001077445	exon2	c.A6G	p.K2K	GATGAAACGCCAT	.	215.0	67.0	209.0	0.0	.	130
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110432768	110432768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PKHD1L1	NM_177531	exon23	c.C2546A	p.P849H	GACTTCCTGCATT	.	334.0	107.0	176.0	0.0	.	145
PLEKHF2	79666	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	96166845	96166845	+	Missense_Mutation	SNP	T	T	G	rs200210769	alternate_allele	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PLEKHF2	NM_024613	exon2	c.T573G	p.F191L	GAGATTTCTTCTT	.	598.0	102.0	421.0	2.0	T|0.999;C|0.001	92
PON1	5444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	94947702	94947702	+	Silent	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PON1	NM_000446	exon2	c.A78C	p.T26T	AAGTCGTGTTCTG	.	145.0	26.0	148.0	0.0	.	91
PPIP5K2	23262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102494240	102494240	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PPIP5K2	NM_015216	exon15	c.A1700T	p.E567V	CTGATGAAGGACG	.	544.0	108.0	343.0	0.0	.	92
PRDM2	7799	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	14075887	14075887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRDM2	NM_015866	exon6	c.G416T	p.W139L	TGGTCTGGTACAA	.	64.0	12.0	54.0	1.0	.	116
PRF1	5551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	72358776	72358776	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRF1	NM_001083116	exon3	c.C701A	p.S234X	AGGGCCGATATGC	.	77.0	11.0	98.0	0.0	.	578
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	42858905	42858905	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRICKLE1	NM_001144882	exon7	c.G931C	p.D311H	GGACGTCTTCACC	.	150.0	40.0	148.0	0.0	.	518
PROM2	150696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95952937	95952937	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PROM2	NM_001165977	exon19	c.C2151T	p.A717A	GCCTGCCTGGGCA	.	100.0	23.0	85.0	0.0	.	91
PTCHD4	442213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47846352	47846352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001013732	exon3	c.C2228A	p.T743N	GTTCGGGTGTGCT	.	251.0	51.0	252.0	0.0	.	.
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44069658	44069658	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PTPRF	NM_002840	exon16	c.C2835T	p.N945N	GAGGAACGGGCGC	.	119.0	28.0	117.0	0.0	.	232
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1664717	1664717	+	Silent	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PXDN	NM_012293	exon14	c.C1773A	p.R591R	CTCATAGCGACCT	.	98.0	12.0	74.0	0.0	.	166
PXDNL	137902	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52366111	52366111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PXDNL	NM_144651	exon10	c.C1217A	p.T406N	TGAACAGTGCCGT	.	364.0	109.0	344.0	1.0	.	70
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170305242	170305242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RANBP17	NM_022897	exon2	c.G160C	p.G54R	GAACAAGGAACAG	.	304.0	58.0	283.0	0.0	.	524
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	204354662	204354662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RAPH1	NM_213589	exon4	c.A377G	p.H126R	AATGTATGTCGGC	.	569.0	34.0	433.0	0.0	.	1151
RHAG	6005	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49604389	49604389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RHAG	NM_000324	exon1	c.T137C	p.I46T	AAGAATATGCCCA	.	371.0	82.0	224.0	2.0	.	154
RHBDL1	9028	broad.mit.edu;bcgsc.ca	37	16	727801	727802	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RHBDL1	NM_003961	exon7	c.1066_1067insA	p.A356fs	GGCCGGGCCGTGT	.	10.0	4.0	44.0	0.0	.	90
RPS4Y2	140032	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	22941543	22941543	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001039567	exon6	c.C681T	p.V227V	TTTTGTCATTGGC	.	305.0	128.0	339.0	0.0	.	.
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78704429	78704429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	RPTOR,NS,carcinoma,0	RPTOR	NM_001163034	exon5	c.G577A	p.V193I	ATCTTCGTCTACG	.	131.0	16.0	134.0	0.0	.	847
RSAD1	55316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48557383	48557383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RSAD1	NM_018346	exon3	c.C412G	p.P138A	TCAGCTCCGGGCT	.	131.0	20.0	144.0	0.0	.	90
RTP1	132112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	186915400	186915400	+	Missense_Mutation	SNP	A	A	T	rs41469544	alternate_allele	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RTP1	NM_153708	exon1	c.A97T	p.T33S	CTCACTACTGACG	.	255.0	46.0	244.0	0.0	.	155
RWDD2A	112611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	83904246	83904249	+	Frame_Shift_Del	DEL	CAAG	CAAG	-	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	CAAG	CAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RWDD2A	NM_033411	exon2	c.76_79del	p.26_27del	CCTAACCAAGGAG	.	132.0	16.0	124.0	0.0	.	68
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62018994	62018994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SCN4A	NM_000334	exon24	c.C4648A	p.P1550T	CTGGGGGCCCGCT	.	92.0	21.0	115.0	0.0	.	93
SERTAD4	56256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210415122	210415122	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SERTAD4	NM_019605	exon4	c.C511G	p.P171A	GACTGCCCTTACC	.	200.0	30.0	138.0	0.0	.	92
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31979928	31979928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SFI1	NM_001007467	exon13	c.C1316A	p.P439H	TGCTCCCCTTACT	.	151.0	29.0	109.0	0.0	.	90
SH3D19	152503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152058972	152058972	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SH3D19	NM_001009555	exon15	c.A1568T	p.Y523F	AGAAGATAAACAA	.	134.0	30.0	95.0	0.0	.	92
SH3GLB1	51100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	87189994	87189994	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SH3GLB1	NM_001206653	exon4	c.178-2A>G	.	ATTTATAGAAAGA	.	452.0	93.0	254.0	0.0	.	90
SLC13A3	64849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45194931	45194931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC13A3	NM_022829	exon11	c.C1431A	p.F477L	AGTGAAGAAGGCG	.	139.0	19.0	140.0	0.0	.	91
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172749745	172749745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC25A12	NM_003705	exon2	c.T36A	p.D12E	ATGAGGATCCCCT	.	333.0	55.0	264.0	0.0	.	90
SLC4A7	9497	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	27473077	27473077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC4A7	NM_003615	exon7	c.T835G	p.S279A	GAAGAGATAAAGG	.	225.0	50.0	183.0	1.0	.	94
SLC9C2	284525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	173570862	173570862	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_178527	exon2	c.C54A	p.C18X	CTGCCCGCAGAGT	.	425.0	66.0	305.0	0.0	.	.
SLC9C2	284525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173570863	173570863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_178527	exon2	c.G53A	p.C18Y	TGCCCGCAGAGTA	.	429.0	69.0	302.0	0.0	.	.
SMARCE1	6605	broad.mit.edu;bcgsc.ca	37	17	38787170	38787170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SMARCE1	NM_003079	exon10	c.G823A	p.G275S	TCAGACCGCACAA	.	107.0	5.0	95.0	0.0	.	227
SMYD2	56950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214501025	214501025	+	Silent	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SMYD2	NM_020197	exon7	c.G663T	p.L221L	GACCCTGGCAGAA	.	187.0	65.0	149.0	0.0	.	227
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172835457	172835457	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SPATA16	NM_031955	exon2	c.T65G	p.V22G	TTTGGAACAAGCT	.	783.0	165.0	698.0	1.0	.	94
STAT2	6773	broad.mit.edu;bcgsc.ca	37	12	56742939	56742954	+	Frame_Shift_Del	DEL	TCCCCTACCTGAAGGT	TCCCCTACCTGAAGGT	-	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	TCCCCTACCTGAAGGT	TCCCCTACCTGAAGGT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STAT2	NM_005419	exon16	c.1433_1440del	p.478_480del	CCCCACTCCCCTA	.	99.0	9.0	90.0	0.0	.	847
STC1	6781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23712004	23712004	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STC1	NM_003155	exon1	c.G33A	p.L11L	GATCACCAGCACC	.	273.0	67.0	232.0	0.0	.	94
STEAP1B	256227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22533400	22533400	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001164460	exon3	c.A140T	p.Q47L	GTTTGCTGCAAAT	.	574.0	114.0	498.0	0.0	.	.
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61788154	61788154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STRADA	NM_001003787	exon7	c.G391T	p.V131L	ATGGCACGATATT	.	156.0	28.0	127.0	0.0	.	547
STUB1	10273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	732214	732214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STUB1	NM_005861	exon6	c.T719C	p.M240T	AGCTGATGCGGGA	.	56.0	22.0	96.0	0.0	.	226
SYT10	341359	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	33592365	33592365	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SYT10	NM_198992	exon1	c.G93A	p.W31X	CTTCTCCCACTCC	.	144.0	12.0	130.0	0.0	.	92
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123843041	123843041	+	Silent	SNP	G	G	T	rs201912981	alternate_allele	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TACC2	NM_206862	exon4	c.G1026T	p.P342P	TCTGCCGCACGCA	.	80.0	18.0	83.0	0.0	G|0.999;A|0.001	296
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19166175	19166175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TAS1R2	NM_152232	exon6	c.A2438G	p.Y813C	ATCATGTAGCACT	.	266.0	29.0	259.0	0.0	.	93
TEKT3	64518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15211984	15211984	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TEKT3	NM_031898	exon8	c.T1253A	p.L418Q	TACCGTAGCTGAG	.	110.0	20.0	163.0	0.0	.	92
TESK2	10420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	45810698	45810699	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TESK2	NM_007170	exon11	c.1530_1531insCA	p.H510fs	AGCCTCATGGGCT	.	151.0	21.0	148.0	0.0	.	624
TNFRSF10D	8793	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23002148	23002148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TNFRSF10D	NM_003840	exon7	c.G769T	p.V257F	AAAGGACCTTGGG	.	83.0	15.0	103.0	1.0	.	651
TRMT44	152992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	8469997	8469997	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_152544	exon9	c.G1851A	p.A617A	AGTAGCGAATTTA	.	145.0	13.0	138.0	0.0	.	.
TRPM8	79054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234878427	234878427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TRPM8	NM_024080	exon16	c.T2114A	p.V705E	CCTTGGTGGGCTG	.	642.0	108.0	583.0	1.0	.	94
URB1	9875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33691583	33691583	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_014825	exon36	c.C5736T	p.A1912A	GTGCAGGGCAAGC	.	99.0	26.0	114.0	0.0	.	.
VCAN	1462	broad.mit.edu;bcgsc.ca	37	5	82816737	82816737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	VCAN	NM_004385	exon7	c.A2612G	p.E871G	CTGATGAAGACAT	.	180.0	9.0	144.0	0.0	.	238
WBP11	51729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14943652	14943652	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	WBP11	NM_016312	exon10	c.A1047G	p.V349V	TTCCTCTACTTCC	.	372.0	67.0	308.0	0.0	.	92
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85707240	85707240	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	WDFY3	NM_014991	exon24	c.A3954G	p.P1318P	CTCCTCTGGTACT	.	244.0	44.0	207.0	0.0	.	93
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	38378259	38378259	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_031951	exon6	c.G5935T	p.E1979X	TTCCCTCAACCAG	.	799.0	152.0	628.0	1.0	.	.
ZNF221	7638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44471487	44471487	+	Silent	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF221	NM_013359	exon6	c.A1833C	p.L611L	AAGTCTATGTGGG	.	98.0	18.0	66.0	0.0	.	91
ZNF318	24149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43306777	43306777	+	Silent	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF318	NM_014345	exon10	c.A4959T	p.L1653L	TTTCCCTAGGGCC	.	295.0	60.0	240.0	2.0	.	157
ZNF331	55422	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54080469	54080469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF331	NM_001253801	exon5	c.G655T	p.D219Y	TGTAAAGACTGTG	.	152.0	25.0	136.0	1.0	.	663
ZNF768	79724	broad.mit.edu;mdanderson.org	37	16	30536127	30536127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF768	NM_024671	exon2	c.C1334G	p.A445G	TGGATGGCCAGCA	.	62.0	14.0	80.0	0.0	.	90
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7404886	7404887	+	Missense_Mutation	DNP	AG	AG	GT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	p.G730W	CACCCCAGGGAAC	.	95.0	32.0	86.0	0.0	.	.
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	164906413	164906414	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	p.V736M	GACCCACGGGAGG	.	109.0	20.0	100.0	0.0	.	.
TBX18	9096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	85446949	85446950	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	p.T426N	GTTGAGGGTGAGG	.	189.0	30.0	195.0	0.0	.	.