Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAM23	8745	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207437884	207437884	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ADAM23	NM_003812	exon18	c.G1702C	p.D568H	GAGTGTGATATTA	.	102.0	12.0	165.0	1.0	.	228
ADCY3	109	broad.mit.edu;ucsc.edu	37	2	25057765	25057765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ADCY3	NM_004036	exon9	c.G1703A	p.R568H	TGCAGGCGCAGCC	.	40.0	7.0	72.0	1.0	.	94
AEBP1	165	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44151907	44151907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	AEBP1	NM_001129	exon17	c.C2204T	p.S735L	ACCTTTCGCCAGA	.	52.0	19.0	86.0	1.0	.	90
ALDH1L1	10840	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	125844550	125844550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ALDH1L1	NM_001270364	exon15	c.T1739C	p.I580T	GGGATGATGATGC	.	131.0	19.0	153.0	1.0	.	156
ALG3	10195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183963596	183963596	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	NM_005787	exon2	c.A201G	p.T67T	AATCTCTGTGTCT	.	73.0	32.0	76.0	1.0	.	.
ALKBH7	84266	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6374593	6374593	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ALKBH7	NM_032306	exon3	c.A496C	p.I166L	CTCTACATCCTTA	.	29.0	15.0	69.0	2.0	.	90
AMMECR1L	83607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128628831	128628831	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	AMMECR1L	NM_031445	exon4	c.G510A	p.T170T	GGTTAACGTGTAT	.	44.0	10.0	74.0	0.0	.	90
ANTXR1	84168	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	69379336	69379336	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ANTXR1	NM_032208	exon13	c.C987T	p.I329I	GCTGATCCTGTTC	.	35.0	19.0	64.0	1.0	.	94
ARHGEF18	23370	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7535139	7535139	+	Silent	SNP	C	C	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ARHGEF18	NM_001130955	exon19	c.C3477G	p.L1159L	ACCACTCAGCGCC	.	51.0	27.0	115.0	1.0	.	228
ART3	419	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77025763	77025763	+	Silent	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ART3	NM_001130016	exon10	c.A984G	p.P328P	AATTCCAGAACCT	.	47.0	36.0	97.0	1.0	.	92
ATP13A2	23400	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17331296	17331296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ATP13A2	NM_001141973	exon5	c.C368T	p.S123F	GCCTGGGACTGTG	.	59.0	6.0	125.0	0.0	.	93
ATP1A2	477	ucsc.edu;bcgsc.ca	37	1	160106381	160106381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ATP1A2	NM_000702	exon19	c.G2585T	p.G862V	TGGGTGGCTTCTT	.	87.0	32.0	105.0	2.0	.	518
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10417206	10417206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ATP2B2	NM_001001331	exon11	c.A1324G	p.K442E	AGAACTTGACAAA	.	126.0	13.0	135.0	0.0	.	95
BAI3	577	ucsc.edu;bcgsc.ca	37	6	69349266	69349266	+	Missense_Mutation	SNP	G	G	T	rs146475807	alternate_allele	TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	BAI3	NM_001704	exon3	c.G699T	p.E233D	CCAGGAGCTGCAA	.	23.0	15.0	61.0	2.0	G|1.000;A|0.000	1148
CCDC144C	348254	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	20224663	20224663	+	RNA	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	.	.	.	.	GGAGGGGCTGAGG	.	48.0	16.0	105.0	0.0	.	.
CCNJL	79616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159686508	159686508	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CCNJL	NM_024565	exon5	c.A695C	p.Y232S	TGGGCATACTCCT	.	31.0	7.0	48.0	0.0	.	90
CILP2	148113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19655201	19655201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CILP2	NM_153221	exon8	c.C1847A	p.T616N	ACCTCACCTCGGC	.	41.0	17.0	71.0	0.0	.	91
COL5A2	1290	broad.mit.edu;bcgsc.ca	37	2	190044308	190044308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	COL5A2	NM_000393	exon1	c.C23A	p.A8E	GGTCTTGCTTCCG	.	64.0	5.0	83.0	0.0	.	92
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17040002	17040002	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CPAMD8	NM_015692	exon24	c.A3035T	p.Q1012L	GGCCGCTGCACAT	.	30.0	5.0	37.0	0.0	.	141
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu	37	8	3165845	3165845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CSMD1	NM_033225	exon24	c.C3812A	p.P1271H	CACGAAGGTAGTG	.	22.0	4.0	71.0	0.0	.	86
CTNNB1	1499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41274909	41274909	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CTNNB1	NM_001098209	exon8	c.A1159T	p.N387Y	CTCAGGAATCTTT	.	170.0	64.0	173.0	1.0	.	24361
CTSD	1509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1778644	1778644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CTSD	NM_001909	exon5	c.G614A	p.R205H	GAGATGCGGGGGT	.	68.0	34.0	61.0	0.0	.	90
CYLD	1540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50815217	50815217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	CYLD	NM_015247	exon11	c.G1579A	p.A527T	ACCTGTGCCCTGA	.	55.0	17.0	105.0	0.0	.	2444
DDX19B	11269	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70366883	70366883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	DDX19B	NM_007242	exon11	c.A1199C	p.E400A	ATGTTGAACAAGT	.	256.0	36.0	495.0	1.0	.	226
DHTKD1	55526	ucsc.edu;bcgsc.ca	37	10	12131085	12131085	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	DHTKD1	NM_018706	exon5	c.T818G	p.F273C	TGTACTTTGGGGC	.	53.0	19.0	114.0	2.0	.	515
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	42080424	42080424	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	DSCAM	NM_001271534	exon2	c.A317T	p.N106I	GAAGGATTTTCAG	.	46.0	15.0	69.0	0.0	.	101
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93205205	93205205	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	EEA1	NM_003566	exon17	c.A2049G	p.L683L	CTTATTTAACTCC	.	43.0	11.0	48.0	0.0	.	229
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65612320	65612320	+	Silent	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	EYS	NM_001142800	exon17	c.T2715C	p.C905C	ATCTTCACAGTCA	.	121.0	26.0	203.0	0.0	.	660
FAM5C	339479	ucsc.edu;bcgsc.ca	37	1	190423871	190423871	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FAM5C	NM_199051	exon2	c.T150A	p.D50E	TCCCTTATCAGAG	.	119.0	22.0	156.0	2.0	.	228
FAM78A	286336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134136583	134136583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FAM78A	NM_033387	exon2	c.G478A	p.D160N	AGTTGTCATTCAT	.	30.0	7.0	57.0	0.0	.	91
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80051623	80051623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FASN	NM_004104	exon4	c.G305A	p.G102E	TGTGTTCCTCGGA	.	68.0	40.0	45.0	0.0	.	90
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	1807577	1807577	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FGFR3	NM_001163213	exon13	c.C1752T	p.C584C	CACCTGCAAGCCG	.	54.0	16.0	76.0	0.0	.	9542
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	153896514	153896514	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FHDC1	NM_033393	exon11	c.G2071T	p.E691X	GGCATGGAGGAGA	.	29.0	12.0	71.0	0.0	.	136
FOS	2353	broad.mit.edu;mdanderson.org	37	14	75747795	75747795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	FOS	NM_005252	exon4	c.G811A	p.D271N	TTTGATGACTTCC	.	13.0	6.0	20.0	1.0	.	847
GLRA4	441509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102978843	102978843	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	GLRA4	NM_001024452	exon5	c.T518G	p.L173R	TCCATCAGGCAGG	.	102.0	69.0	280.0	1.0	.	108
GPR158	57512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25464385	25464385	+	Silent	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	GPR158	NM_020752	exon1	c.C36A	p.L12L	CTGCCTCCTGCTT	.	57.0	19.0	61.0	1.0	.	141
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104499796	104499796	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	GRIN3A	NM_133445	exon1	c.G466C	p.A156P	GGCCTGCCTCGAT	.	54.0	19.0	108.0	0.0	.	96
GRXCR1	389207	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42895456	42895456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	GRXCR1	NM_001080476	exon1	c.C173A	p.S58Y	GTGATTCCGATGG	.	91.0	58.0	134.0	1.0	.	23
HGS	9146	hgsc.bcm.edu;broad.mit.edu	37	17	79660939	79660939	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	HGS	NM_004712	exon11	c.880delC	p.P294fs	GCGGAGCCCATGC	.	54.0	15.0	28.0	0.0	.	91
HNRNPUL1	11100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41785002	41785002	+	Silent	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	HNRNPUL1	NM_007040	exon6	c.G807A	p.V269V	CTCCGTGAAGCAC	.	39.0	14.0	64.0	1.0	.	69
IL5RA	3568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	3137002	3137002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	IL5RA	NM_001243099	exon8	c.C836A	p.T279K	TTCCTTGTATTGT	.	116.0	51.0	161.0	0.0	.	91
IL9R	3581	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	155233210	155233210	+	Missense_Mutation	SNP	G	G	T	rs182426355	by1000genomes;alternate_allele	TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	IL9R	NM_176786	exon4	c.G380T	p.W127L	GCCCCTGGCTCCT	.	76.0	37.0	150.0	1.0	G|1.000;A|0.000	40
IQCE	23288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2625881	2625881	+	Silent	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	IQCE	NM_152558	exon12	c.G864A	p.K288K	GCAGAAGAAGATG	.	45.0	9.0	61.0	1.0	.	226
KAT6B	23522	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	76789864	76789864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	NM_012330	exon18	c.G5282A	p.S1761N	CTCCGAGCAGCAG	.	31.0	12.0	57.0	1.0	.	.
KCNA5	3741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	5154790	5154790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	KCNA5	NM_002234	exon1	c.G1477A	p.G493S	GTTGGGGGCAAGA	.	67.0	28.0	112.0	2.0	.	715
KRTAP4-8	728224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39254310	39254310	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	NM_031960	exon1	c.G27A	p.V9V	AGAGCACACGGAG	.	165.0	26.0	192.0	1.0	.	.
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7002349	7002349	+	Silent	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	LAMA1	NM_005559	exon30	c.T4296C	p.D1432D	ACACACATCACAA	.	37.0	9.0	52.0	0.0	.	149
LAMA1	284217	ucsc.edu;bcgsc.ca	37	18	6958596	6958596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	LAMA1	NM_005559	exon55	c.G7844A	p.S2615N	GTCCTGCTTTCTA	.	125.0	24.0	206.0	2.0	.	149
MAP4K5	11183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50911780	50911780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	MAP4K5	NM_006575	exon18	c.G1318T	p.V440L	CTGCCACAGGCCC	.	73.0	16.0	122.0	0.0	.	546
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141755415	141755415	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	MGAM	NM_004668	exon28	c.C3372T	p.T1124T	CTCCACCCGCCTT	.	72.0	14.0	93.0	1.0	.	70
MTMR7	9108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17163407	17163407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	MTMR7	NM_004686	exon11	c.A1211C	p.E404A	ACACACTCAATGA	.	33.0	14.0	142.0	0.0	.	91
MYO9B	4650	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17283665	17283665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	MYO9B	NM_001130065	exon13	c.A2033G	p.D678G	GCATGGACCCCGT	.	16.0	7.0	44.0	2.0	.	67
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152476269	152476269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	NEB	NM_001271208	exon73	c.A10568G	p.Y3523C	TCTTTGTATTTGT	.	76.0	28.0	132.0	1.0	.	145
NLRX1	79671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119052990	119052990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	NLRX1	NM_024618	exon9	c.G2542A	p.G848S	GGTGCTGGTGACA	.	25.0	7.0	56.0	0.0	.	92
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64434901	64434901	+	Missense_Mutation	SNP	C	C	A	rs143130600	alternate_allele	TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	NRXN2	NM_015080	exon9	c.G1619T	p.G540V	GCTCCACCCCCAG	.	49.0	11.0	81.0	0.0	C|1.000;T|0.000	232
OBSCN	84033	ucsc.edu;bcgsc.ca	37	1	228451857	228451857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	OBSCN	NM_001271223	exon18	c.G5178T	p.R1726S	GAGCAGGGAGGTG	.	157.0	57.0	210.0	2.0	.	403
OR2M7	391196	ucsc.edu;bcgsc.ca	37	1	248487600	248487600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	OR2M7	NM_001004691	exon1	c.T271C	p.S91P	AAATGGACTTGCT	.	163.0	76.0	206.0	2.0	.	70
OR52N4	390072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5776243	5776243	+	Silent	SNP	C	C	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	OR52N4	NM_001005175	exon1	c.C273G	p.L91L	TCATCTCAAGGAC	.	74.0	12.0	123.0	0.0	.	2
OR7D2	162998	broad.mit.edu;mdanderson.org	37	19	9296842	9296842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	OR7D2	NM_175883	exon1	c.C385A	p.P129T	TGCCACCCTCTGC	.	18.0	3.0	75.0	0.0	.	71
P2RY1	5028	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	152553754	152553754	+	Silent	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	P2RY1	NM_002563	exon1	c.A183G	p.V61V	CTTGGTATTCATC	.	159.0	17.0	209.0	1.0	.	500
PABPC5	140886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	90690699	90690699	+	Silent	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PABPC5	NM_080832	exon2	c.T123A	p.A41A	GCCTGCTGGCCCT	.	16.0	10.0	53.0	0.0	.	110
PAX6	5080	ucsc.edu;bcgsc.ca	37	11	31815289	31815289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PAX6	NM_001604	exon11	c.G869T	p.R290I	GCCTGTCTTCTCT	.	134.0	53.0	160.0	2.0	.	1086
PKP1	5317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201294914	201294914	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PKP1	NM_000299	exon13	c.T2117C	p.L706P	CCCGGCTTCTCCT	.	116.0	25.0	139.0	0.0	.	92
PLAA	9373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	26905887	26905887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PLAA	NM_001031689	exon14	c.G2010C	p.Q670H	TCCTGCCTGGCCA	.	93.0	22.0	198.0	0.0	.	514
PORCN	64840	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	48375573	48375573	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PORCN	NM_203475	exon13	c.C1176T	p.G392G	ACAGGGCCTGGGG	.	10.0	8.0	50.0	1.0	.	133
POU2F1	5451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167384897	167384897	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	POU2F1	NM_002697	exon16	c.T2151C	p.S717S	GGTCTCTGCCGCC	.	80.0	21.0	133.0	0.0	.	579
PRMT1	3276	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50180570	50180570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PRMT1	NM_001207042	exon1	c.G33A	p.M11I	CATCATGGAGGTG	.	18.0	4.0	31.0	0.0	.	91
PRPF8	10594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1576479	1576479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PRPF8	NM_006445	exon24	c.C3670T	p.R1224C	CTGTGCGCTCCTT	.	21.0	15.0	63.0	1.0	.	525
PRSS41	360226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2854526	2854526	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	NM_001135086	exon4	c.T717C	p.D239D	TGAGGATGGCAGT	.	53.0	10.0	75.0	0.0	.	.
PTOV1	53635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50361895	50361895	+	Silent	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PTOV1	NM_017432	exon10	c.C1026A	p.I342I	CCGGATCATGGAC	.	52.0	25.0	81.0	0.0	.	226
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2988018	2988018	+	Silent	SNP	G	G	A	rs142755718		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PTPRA	NM_002836	exon15	c.G858A	p.P286P	GACACCGGTTGAA	.	106.0	14.0	106.0	0.0	G|1.000;A|0.000	227
PTPRC	5788	ucsc.edu;bcgsc.ca	37	1	198721765	198721765	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PTPRC	NM_002838	exon31	c.T3373A	p.W1125R	ACAAACTGGAGTG	.	111.0	27.0	158.0	2.0	.	295
PXK	54899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58395296	58395296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	PXK	NM_017771	exon15	c.A1346G	p.H449R	AGTCCCACCATGG	.	196.0	92.0	253.0	1.0	.	334
RAB9B	51209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	103080318	103080318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RAB9B	NM_016370	exon3	c.G397A	p.V133M	TAGTCACTTGCCT	.	24.0	17.0	91.0	0.0	.	659
RBM42	79171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36120133	36120133	+	Silent	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RBM42	NM_024321	exon1	c.G78T	p.P26P	CATCCCGGGCAAA	.	27.0	11.0	35.0	0.0	.	90
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48389747	48389747	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RBP3	NM_002900	exon1	c.G1131A	p.Q377Q	CGCAGCCTGCAGG	.	41.0	15.0	57.0	0.0	.	153
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43600449	43600449	+	Silent	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RET	NM_020975	exon4	c.G675A	p.T225T	GAGCACGCGCTGG	.	40.0	13.0	59.0	0.0	.	4507
RFX3	5991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	3247979	3247979	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RFX3	NM_002919	exon16	c.A2021T	p.E674V	TGTAATTCTGGCT	.	32.0	12.0	66.0	0.0	.	93
RTKN2	219790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63957724	63957724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RTKN2	NM_145307	exon12	c.G1773T	p.R591S	TTTCTGCCTTGGA	.	104.0	37.0	173.0	2.0	.	68
RXRG	6258	ucsc.edu;bcgsc.ca	37	1	165398166	165398166	+	Silent	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	RXRG	NM_006917	exon2	c.A87T	p.P29P	TGCTGATGGGCTC	.	72.0	31.0	76.0	2.0	.	186
SERPINA6	866	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94772500	94772500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SERPINA6	NM_001756	exon4	c.G940T	p.D314Y	GCACATCTCCGAG	.	78.0	30.0	118.0	1.0	.	653
SH3BP2	6452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2829348	2829348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SH3BP2	NM_001145856	exon7	c.A704G	p.D235G	ACGACGATGAGGA	.	67.0	30.0	127.0	0.0	.	514
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50350826	50350826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SHROOM4	NM_020717	exon6	c.C3316A	p.P1106T	TGGGAGGAGGAGG	.	30.0	17.0	92.0	0.0	.	131
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44841639	44841639	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SIK1	NM_173354	exon5	c.G378A	p.A126A	CTTCCGCGCCTCG	.	78.0	24.0	111.0	0.0	.	346
SLC5A5	6528	ucsc.edu;bcgsc.ca	37	19	18004537	18004537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SLC5A5	NM_000453	exon15	c.C1783T	p.P595S	GAACTCCCCACTG	.	96.0	35.0	137.0	2.0	.	93
SNF8	11267	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47014463	47014463	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SNF8	NM_007241	exon4	c.A268T	p.M90L	CCAGCATCTCAGA	.	124.0	32.0	135.0	2.0	.	90
SORBS1	10580	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97101323	97101323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SORBS1	NM_001034955	exon25	c.G2608A	p.E870K	GTACCTCGATGTA	.	61.0	25.0	86.0	1.0	.	155
SPECC1	92521	ucsc.edu;bcgsc.ca	37	17	20107972	20107972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SPECC1	NM_001033553	exon4	c.G610T	p.G204W	GCTGAGGGGACTG	.	81.0	60.0	204.0	2.0	.	639
STIP1	10963	broad.mit.edu;bcgsc.ca	37	11	63964989	63964989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	STIP1	NM_006819	exon7	c.A824G	p.Y275C	GCGACTACAATAA	.	66.0	13.0	104.0	2.0	.	93
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113312149	113312149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SVEP1	NM_153366	exon2	c.C767G	p.A256G	CGGCGAGCTAAAG	.	83.0	16.0	171.0	0.0	.	75
SYNDIG1	79953	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	24565510	24565510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SYNDIG1	NM_024893	exon3	c.A499G	p.T167A	AGCGACACAGAGA	.	64.0	29.0	60.0	1.0	.	91
SYNE2	23224	ucsc.edu;bcgsc.ca	37	14	64518505	64518505	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	SYNE2	NM_182914	exon48	c.A7874T	p.Y2625F	TGGAATATGATGA	.	225.0	87.0	331.0	2.0	.	164
TAF1C	9013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84214736	84214736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	TAF1C	NM_005679	exon11	c.G1299T	p.Q433H	CCCTTTCTGGCAC	.	54.0	28.0	114.0	0.0	.	91
TBC1D10B	26000	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30370140	30370140	+	Splice_Site	SNP	T	T	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	NM_015527	exon9	c.1643-2A>T	.	AACGCCTGCAGGG	.	56.0	16.0	83.0	1.0	.	.
TEK	7010	broad.mit.edu;ucsc.edu	37	9	27212818	27212818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	TEK	NM_000459	exon17	c.T2800C	p.S934P	ACCGCGTCCACAC	.	23.0	6.0	55.0	1.0	.	1584
TEP1	7011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20874511	20874511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	TEP1	NM_007110	exon3	c.C616T	p.P206S	AAGAAGGCATTTG	.	29.0	7.0	48.0	1.0	.	95
TMEM38B	55151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	108536210	108536210	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	TMEM38B	NM_018112	exon6	c.G725A	p.W242X	TGAGTTGGATGCT	.	95.0	34.0	158.0	0.0	.	92
TP53	7157	hgsc.bcm.edu;bcgsc.ca	37	17	7579389	7579399	+	Frame_Shift_Del	DEL	GGGAAGGGACA	GGGAAGGGACA	-	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	GGGAAGGGACA	GGGAAGGGACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon4	c.288_298del	p.96_100del	TTTTCTGGGAAGG	.	65.0	23.0	195.0	0.0	.	70225
TUBGCP2	10844	ucsc.edu;bcgsc.ca	37	10	135113524	135113524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	TUBGCP2	NM_001256617	exon3	c.G244A	p.V82M	GGTACACCAGCGG	.	115.0	52.0	124.0	2.0	.	90
UBXN1	51035	ucsc.edu;mdanderson.org	37	11	62445985	62445985	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	UBXN1	NM_015853	exon3	c.G202T	p.E68X	CTTGCTCTGAGGA	.	59.0	11.0	124.0	2.0	.	90
ULK4	54986	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41954356	41954356	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ULK4	NM_017886	exon9	c.G839C	p.W280S	TTCTTCCAAAATG	.	76.0	25.0	119.0	2.0	.	297
UNKL	64718	ucsc.edu;bcgsc.ca	37	16	1417119	1417119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	UNKL	NM_023076	exon5	c.C517T	p.R173C	CCAGGCGCAGCTG	.	44.0	4.0	64.0	0.0	.	90
URB2	9816	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229770867	229770867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	URB2	NM_014777	exon4	c.G507T	p.L169F	CCAGTTGTTTGAG	.	81.0	27.0	104.0	1.0	.	174
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215802343	215802343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	USH2A	NM_206933	exon71	c.C15332T	p.T5111I	ACAGGTGTCCCAG	.	109.0	13.0	164.0	0.0	.	115
VWDE	221806	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12409323	12409323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	VWDE	NM_001135924	exon12	c.G2609T	p.G870V	TATTTCCCCTCCT	.	116.0	37.0	167.0	1.0	.	68
WDFY4	57705	broad.mit.edu;mdanderson.org	37	10	50022037	50022037	+	Silent	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	WDFY4	NM_020945	exon31	c.G5250A	p.Q1750Q	CCTGCAGAGGCAC	.	16.0	4.0	37.0	0.0	.	22
WDR91	29062	broad.mit.edu;bcgsc.ca	37	7	134894445	134894445	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	WDR91	NM_014149	exon2	c.G186A	p.R62R	ATAATCCCGAAGG	.	53.0	23.0	102.0	2.0	.	137
ZBTB32	27033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36207170	36207170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ZBTB32	NM_014383	exon5	c.A1160T	p.Q387L	AGCATCAGATGGA	.	81.0	27.0	82.0	0.0	.	92
ZNF845	91664	ucsc.edu;bcgsc.ca	37	19	53854400	53854400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	NM_138374	exon4	c.G472T	p.G158W	ACCGAAGGGAAAA	.	199.0	78.0	289.0	2.0	.	.
ZNF85	7639	broad.mit.edu;ucsc.edu	37	19	21132332	21132332	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ZNF85	NM_001256171	exon5	c.G1102T	p.G368X	CATACTGGAGAGA	.	47.0	12.0	87.0	1.0	.	514
ZNF85	7639	ucsc.edu;bcgsc.ca	37	19	21132585	21132585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	ZNF85	NM_001256171	exon5	c.G1355A	p.G452E	ATACTGGAGAGAA	.	79.0	22.0	123.0	2.0	.	514
C15orf55	0	ucsc.edu;bcgsc.ca	37	15	34642906	34642907	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-BC-A69H-01A-11D-A30V-10	TCGA-BC-A69H-10A-01D-A30V-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e0f3c4-dcff-4718-8461-381609521e4f	371b4d98-49a4-4605-a24e-d7b92923da58	.	.	.	.	.	p.P271K	TTTAGCCCAGTGC	.	68.0	25.0	114.0	2.0	.	.