Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACTR8	93973	broad.mit.edu;ucsc.edu	37	3	53911741	53911741	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ACTR8	NM_022899	exon4	c.T443G	p.L148X	TGATCTAAAATTG	.	126.0	53.0	154.0	2.0	.	91
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	9255937	9255939	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ANKRD12	NM_015208	exon9	c.2672_2674del	p.891_892del	AAAATACTGCTGC	.	49.0	12.0	45.0	0.0	.	92
ANO10	55129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43618347	43618347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ANO10	NM_018075	exon6	c.G999A	p.M333I	AATCATCATGACA	.	202.0	92.0	288.0	0.0	.	92
ARL9	132946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57389953	57389953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ARL9	NM_206919	exon4	c.A283G	p.T95A	TTTGGAACCTACC	.	91.0	80.0	201.0	0.0	.	22
ARMC9	80210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232087516	232087516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ARMC9	NM_025139	exon6	c.A580G	p.K194E	ACGCCAAAGCTTT	.	125.0	56.0	131.0	0.0	.	91
B4GALNT4	338707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	373809	373809	+	Missense_Mutation	SNP	C	C	T	rs144647644	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	B4GALNT4	NM_178537	exon8	c.C764T	p.S255L	GCGGCTCGGACCA	.	41.0	18.0	106.0	0.0	C|1.000;T|0.000	91
BAX	581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49464295	49464295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	BAX	NM_004324	exon5	c.C598T	p.P200S	TGGTGCCCTCTCC	.	28.0	14.0	22.0	0.0	.	1271
BMP2	650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	6759153	6759153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	BMP2	NM_001200	exon3	c.G608T	p.R203M	CAAGCAGGTGGGA	.	96.0	44.0	100.0	0.0	.	1044
BPGM	669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	134346580	134346580	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	BPGM	NM_199186	exon3	c.T321C	p.H107H	GAATCATGGTGAA	.	294.0	120.0	301.0	1.0	.	226
C1orf213	148898	ucsc.edu;mdanderson.org	37	1	23698088	23698088	+	RNA	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	C1orf213	.	.	.	.	TTGGCCAGGGTCT	.	90.0	24.0	101.0	0.0	.	68
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2229596	2229596	+	Silent	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CACNA1C	NM_001129831	exon3	c.G477T	p.L159L	CAACCTGGTAAGT	.	101.0	86.0	224.0	1.0	.	34
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49200783	49200783	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CCDC71	NM_022903	exon2	c.C859G	p.R287G	GTGTTCGAGCTAC	.	23.0	12.0	34.0	0.0	.	91
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	130898811	130898811	+	Silent	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CCDC74B	NM_207310	exon4	c.C603A	p.P201P	CTTCTGGGGGACG	.	158.0	75.0	230.0	1.0	.	90
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109814047	109814047	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CELSR2	NM_001408	exon27	c.G7716A	p.L2572L	GCTGCTGAGCGCC	.	154.0	75.0	179.0	0.0	.	526
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40045242	40045242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CHD6	NM_032221	exon33	c.G6472A	p.A2158T	TCTGGGCCGCCAA	.	64.0	20.0	89.0	0.0	.	238
COL11A1	1301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	103480065	103480065	+	Splice_Site	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	COL11A1	NM_001190709	exon13	c.1455+2T>A	.	TGTCTTACCCGAG	.	151.0	65.0	181.0	1.0	.	586
CTNNB1	1499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41274853	41274853	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CTNNB1	NM_001098209	exon8	c.T1103A	p.L368H	TAGGACTTCACCT	.	191.0	92.0	200.0	1.0	.	24361
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36700222	36700222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	DCLK1	NM_004734	exon2	c.C53T	p.A18V	CTCTGCGCCTTAT	.	22.0	21.0	69.0	0.0	.	826
EMC7	56851	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34393819	34393819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_020154	exon1	c.C222G	p.H74Q	ACCGACGTGCTCT	.	89.0	15.0	145.0	0.0	.	.
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5428441	5428441	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	EPB41L3	NM_012307	exon9	c.G936C	p.M312I	TCCTAACATAATT	.	79.0	35.0	94.0	0.0	.	95
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97194245	97194245	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	EPHA6	NM_001080448	exon8	c.C1944T	p.A648A	CACCGCCGCTGTT	.	83.0	14.0	89.0	0.0	.	1561
FAM205B	389715	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34837695	34837695	+	RNA	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	.	.	.	.	TGGTGACGCTTAA	.	135.0	76.0	172.0	1.0	.	.
FAT2	2196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150948080	150948080	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FAT2	NM_001447	exon1	c.T413G	p.I138S	TCCAGGATGTGGA	.	218.0	99.0	296.0	2.0	.	96
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58107094	58107094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FLNB	NM_001457	exon20	c.C2990G	p.T997R	CTGTGACAGGCCG	.	103.0	52.0	153.0	0.0	.	593
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180048543	180048543	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FLT4	NM_182925	exon13	c.G2019A	p.Q673Q	CTCACCCTGCACC	.	59.0	18.0	164.0	0.0	.	1490
FYN	2534	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111982951	111982951	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FYN	NM_002037	exon14	c.A1605C	p.E535D	CAGGTTTTCACCA	.	33.0	32.0	72.0	1.0	.	1000
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42004352	42004352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	GLI3	NM_000168	exon15	c.C4319A	p.S1440Y	TGACCAGAGTAAT	.	196.0	88.0	222.0	0.0	.	1149
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18869095	18869095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	HDAC9	NM_178425	exon18	c.T2390A	p.F797Y	TCTGCTTTTTTAA	.	67.0	15.0	70.0	0.0	.	227
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	44219604	44219604	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	HSP90AB1	NM_007355	exon9	c.1445delC	p.S482fs	AGAAGTCCATCTA	.	46.0	30.0	160.0	0.0	.	658
ITGB6	3694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	161055767	161055767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ITGB6	NM_000888	exon2	c.G64A	p.G22S	CACAGCCACCTAG	.	474.0	92.0	587.0	1.0	.	227
ITSN2	50618	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24509193	24509193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ITSN2	NM_147152	exon16	c.A1751C	p.K584T	AATGATTTTTTAT	.	269.0	27.0	157.0	2.0	.	539
KCNN1	3780	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18099244	18099244	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KCNN1	NM_002248	exon7	c.C1080T	p.L360L	CGCGCTCGTGGTG	.	59.0	23.0	137.0	1.0	.	22
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	86669229	86669229	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KDM3A	NM_001146688	exon2	c.59delT	p.L20fs	TCAGTCTGTCCGC	.	92.0	58.0	160.0	0.0	.	291
KIR3DL2	3812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55378066	55378066	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KIR3DL2	NM_006737	exon9	c.G1248A	p.Q416Q	TTCTCAGAGGCCC	.	213.0	36.0	195.0	1.0	.	92
LCMT2	9836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43622043	43622043	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	LCMT2	NM_014793	exon1	c.C645G	p.F215L	GACCACGAAAAGG	.	101.0	53.0	256.0	0.0	.	90
LRRC33	375387	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	196386948	196386948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	LRRC33	NM_198565	exon3	c.C434T	p.T145M	CCCTGACGGAGGA	.	43.0	7.0	97.0	1.0	.	92
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95111015	95111015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	MYOF	NM_013451	exon35	c.C3860T	p.A1287V	TTTGGCGCCCTTT	.	71.0	15.0	208.0	0.0	.	93
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56321586	56321586	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	NLRP11	NM_145007	exon5	c.C390T	p.Y130Y	AAGTATGTAGAAC	.	107.0	55.0	131.0	0.0	.	169
NUP133	55746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229586330	229586330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	NUP133	NM_018230	exon23	c.G3122A	p.R1041K	GCTCTTCTATTTT	.	236.0	81.0	183.0	2.0	.	271
OMG	4974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29622317	29622317	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	OMG	NM_002544	exon2	c.T1033A	p.S345T	CATGTGAATTGAT	.	136.0	42.0	170.0	0.0	.	493
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu	37	11	56468748	56468748	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001013358	exon1	c.T885C	p.D295D	TAAGGATGTGAAA	.	36.0	5.0	49.0	0.0	.	.
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82585867	82585867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PCLO	NM_014510	exon5	c.A4402G	p.I1468V	CTTTGATCTCCTC	.	78.0	35.0	59.0	1.0	.	29
PDZRN3	23024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73433851	73433851	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PDZRN3	NM_015009	exon10	c.C1866T	p.N622N	AGACTCGTTGCTG	.	55.0	26.0	111.0	1.0	.	232
PIN4	5303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71401594	71401594	+	Silent	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PIN4	NM_001170747	exon1	c.C34A	p.R12R	CTTGTACGGCAAC	.	170.0	163.0	243.0	2.0	.	130
PLCB4	5332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9365037	9365037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PLCB4	NM_182797	exon12	c.A1043G	p.Q348R	ACAGACAGGTTCT	.	153.0	75.0	177.0	2.0	.	274
PRCP	5547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82571056	82571056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PRCP	NM_199418	exon3	c.G335T	p.G112V	TCATTACCAGTGT	.	125.0	31.0	155.0	0.0	.	91
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	42853904	42853904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PRICKLE1	NM_001144882	exon8	c.G2203A	p.A735T	CATGGGCGTACTG	.	78.0	27.0	92.0	0.0	.	518
PRKD1	5587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	30066720	30066720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PRKD1	NM_002742	exon16	c.C2411A	p.P804H	TTCCAGGGATTTG	.	78.0	41.0	87.0	0.0	.	1534
PTK2B	2185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	27255270	27255270	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PTK2B	NM_173174	exon7	c.A169T	p.K57X	AACTTCAAACTGG	.	236.0	97.0	286.0	0.0	.	1378
SIGLEC14	100049587	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52149062	52149062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SIGLEC14	NM_001098612	exon3	c.G673A	p.E225K	TTCTCTCCGTGGT	.	441.0	196.0	695.0	1.0	.	23
SIPA1L3	23094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38633281	38633281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SIPA1L3	NM_015073	exon12	c.G3464C	p.R1155P	CCTACCGACAGCC	.	102.0	43.0	110.0	2.0	.	91
SKAP2	8935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	26765154	26765154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SKAP2	NM_003930	exon9	c.A689G	p.Y230C	TCATCATAATCCT	.	44.0	24.0	64.0	0.0	.	91
SLC45A1	50651	bcgsc.ca;mdanderson.org	37	1	8384368	8384368	+	Silent	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SLC45A1	.	.	.	.	ACAGGGACGCCCA	.	32.0	9.0	61.0	0.0	.	494
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1371215	1371215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SNTG2	NM_018968	exon17	c.G1589T	p.S530I	GTCAGAGTCTTGC	.	235.0	53.0	157.0	0.0	.	136
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17890006	17890006	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SNX13	NM_015132	exon11	c.A1029G	p.V343V	GTCACATACCTTC	.	62.0	27.0	78.0	0.0	.	650
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118535171	118535171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SPAG17	NM_206996	exon36	c.C5279T	p.P1760L	ACACTGGGGCTCT	.	119.0	58.0	151.0	0.0	.	158
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77528719	77528719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ST6GALNAC5	NM_030965	exon5	c.G839A	p.C280Y	ATGAATGTACAAT	.	142.0	70.0	176.0	0.0	.	92
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113173839	113173839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SVEP1	NM_153366	exon37	c.A6152G	p.Y2051C	AGGCTGTAACCAT	.	64.0	43.0	80.0	0.0	.	75
TAF9B	51616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	77392438	77392438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TAF9B	NM_015975	exon5	c.G455T	p.S152I	TTGCTACTAACAG	.	83.0	5.0	107.0	0.0	.	40
TEK	7010	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27157964	27157964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TEK	NM_000459	exon2	c.C188A	p.A63D	TTGAAGCCTTAAT	.	181.0	58.0	273.0	1.0	.	1584
THADA	63892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	43779386	43779386	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	THADA	NM_001083953	exon18	c.C2767T	p.R923X	GGACTCGCCCATA	.	319.0	229.0	179.0	0.0	.	228
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	128134854	128134854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	THEMIS	NM_001010923	exon4	c.A932G	p.K311R	TACTTTTTGTGGA	.	59.0	46.0	118.0	0.0	.	94
TICAM1	148022	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4817368	4817368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TICAM1	NM_182919	exon2	c.C1022A	p.T341N	GAGGTGGTATCTT	.	172.0	76.0	155.0	1.0	.	153
TLE1	7088	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84208091	84208091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TLE1	NM_005077	exon15	c.A1430G	p.Q477R	TTGATCTGGCGAG	.	135.0	46.0	233.0	1.0	.	92
TLE1	7088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84208095	84208095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TLE1	NM_005077	exon15	c.C1426A	p.R476S	TCTGGCGAGCATG	.	136.0	50.0	237.0	0.0	.	92
TMEM110-MUSTN1	100526772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52867655	52867655	+	Silent	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001198974	exon9	c.C990A	p.T330T	CTGGTAGGTCTTG	.	99.0	43.0	96.0	0.0	.	.
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577111	7577111	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	TP53,NS,carcinoma,0	TP53	NM_000546	exon8	c.C827G	p.A276G	GGACAGGCACAAA	.	46.0	41.0	128.0	0.0	.	70225
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31294718	31294718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TRPM1	NM_001252020	exon27	c.A4236T	p.K1412N	TTCTTCTTTTTTA	.	43.0	18.0	50.0	0.0	.	94
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130493535	130493535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TTC16	NM_144965	exon14	c.G2473C	p.G825R	GGCCAGGGCCAGA	.	186.0	51.0	297.0	0.0	.	90
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179494983	179494983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TTN	NM_001267550	exon239	c.C44266A	p.H14756N	GGAGGTGGGCACT	.	106.0	52.0	137.0	1.0	.	636
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10475628	10475628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TYK2	NM_003331	exon8	c.C1108T	p.R370W	GCTCCCGCGGCCT	.	68.0	14.0	95.0	0.0	.	1009
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4924702	4924702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	UBN1	NM_001079514	exon15	c.C2291A	p.S764Y	AGCTGTCCTGCCA	.	24.0	4.0	49.0	0.0	.	92
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82835447	82835447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	VCAN	NM_004385	exon8	c.A6625C	p.T2209P	TTAGCTACTGCAT	.	109.0	58.0	123.0	0.0	.	238
WDR1	9948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10077080	10077080	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	WDR1	NM_017491	exon15	c.C1743T	p.S581S	GGCCAGGCTGCTG	.	200.0	68.0	387.0	1.0	.	48
ZDHHC12	84885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131483968	131483968	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZDHHC12	NM_032799	exon4	c.G444A	p.L148L	CAGCTGCAGCGCC	.	267.0	31.0	618.0	0.0	.	90
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57466587	57466587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZDHHC5	NM_015457	exon11	c.G1679T	p.R560L	CGGGCCGTGAGGA	.	63.0	15.0	92.0	0.0	.	226
ZFP62	643836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180276821	180276821	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001172638	exon2	c.A1674G	p.E558E	AGGTCGTTCCCCA	.	66.0	19.0	66.0	0.0	.	.
ZNF469	84627	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88502790	88502790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001127464	exon2	c.C8828T	p.A2943V	CTGGTGCAGAGAA	.	41.0	15.0	92.0	1.0	.	.
ZNF687	57592	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151258940	151258940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZNF687	NM_020832	exon2	c.C173T	p.S58F	CAGCCTCTGCTGG	.	74.0	37.0	86.0	1.0	.	92
ZNF710	374655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90611162	90611162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZNF710	NM_198526	exon2	c.C793T	p.R265C	GTGGAACGCCACA	.	94.0	51.0	196.0	0.0	.	90
ZNF76	7629	hgsc.bcm.edu;broad.mit.edu	37	6	35262247	35262247	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZNF76	NM_003427	exon13	c.C1509T	p.T503T	CATTACCTCTGGG	.	104.0	5.0	332.0	0.0	.	90