Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A2M	2	ucsc.edu;bcgsc.ca	37	12	9241795	9241795	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	A2M	NM_000014	exon23	c.2770+1G>T	.	CTCTTACCTGATG	.	117.0	47.0	121.0	1.0	.	515
AP3B2	8120	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83331627	83331627	+	Silent	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	AP3B2	NM_004644	exon22	c.G2595T	p.R865R	AGCTACCCGGTGC	.	72.0	43.0	62.0	0.0	.	94
C15orf43	145645	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	45250636	45250636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	C15orf43	NM_152448	exon3	c.C212T	p.A71V	TCTCTGCGGTAGC	.	142.0	72.0	119.0	0.0	.	90
CACNA1B	774	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	140878654	140878654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CACNA1B	NM_001243812	exon13	c.T1721A	p.I574N	TTGGGATCAGTGT	.	234.0	102.0	283.0	1.0	.	138
CADPS	8618	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62502268	62502268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CADPS	NM_003716	exon15	c.C2444T	p.S815L	AAGAGTGAGAGAG	.	266.0	91.0	271.0	0.0	.	281
CAPN12	147968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39226821	39226821	+	Silent	SNP	C	C	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CAPN12	NM_144691	exon12	c.G1512C	p.P504P	GGTGCTCGGCACC	.	31.0	15.0	55.0	0.0	.	91
CEL	1056	hgsc.bcm.edu;bcgsc.ca	37	9	135944115	135944115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CEL	NM_001807	exon8	c.G961T	p.A321S	ATCCCCGCTGACC	.	650.0	122.0	834.0	1.0	.	91
CKAP5	9793	ucsc.edu;bcgsc.ca	37	11	46829629	46829629	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CKAP5	NM_001008938	exon8	c.C930T	p.P310P	CAGTTTGGGGTTT	.	225.0	97.0	199.0	1.0	.	92
COL6A6	131873	ucsc.edu;bcgsc.ca	37	3	130282159	130282159	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	COL6A6	NM_001102608	exon2	c.C312T	p.S104S	CGGGTCCCTGCAG	.	172.0	82.0	198.0	1.0	.	76
CPT1A	1374	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68530124	68530124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CPT1A	NM_001876	exon15	c.G1846A	p.V616M	CCCGCACGAAGTC	.	85.0	34.0	81.0	0.0	.	149
CSMD1	64478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3216824	3216824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CSMD1	NM_033225	exon21	c.G3154T	p.A1052S	TGAAGGCAGGGAC	.	86.0	71.0	151.0	0.0	.	86
CXCR7	57007	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237489341	237489341	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CXCR7	NM_020311	exon2	c.A233T	p.D78V	GCTATGACACGCA	.	159.0	79.0	171.0	0.0	.	1145
DCAF12L2	340578	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	125299293	125299293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DCAF12L2	NM_001013628	exon1	c.C615A	p.D205E	TACGGTGTCACTC	.	248.0	44.0	267.0	0.0	.	113
DHX29	54505	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	54563641	54563641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DHX29	NM_019030	exon22	c.G3304A	p.A1102T	CTGCAGCTAGTGT	.	70.0	32.0	66.0	0.0	.	229
DNAJC5G	285126	ucsc.edu;bcgsc.ca	37	2	27500670	27500670	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DNAJC5G	NM_173650	exon4	c.G162A	p.R54R	GGGTAGGAAACTG	.	197.0	87.0	171.0	1.0	.	226
DST	667	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56497659	56497659	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DST	NM_001723	exon14	c.A2187G	p.A729A	TCTTTCTGCAGAT	.	128.0	46.0	93.0	0.0	.	523
EPOR	2057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11491862	11491862	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	EPOR	NM_000121	exon5	c.C609A	p.T203T	ACACTCGGTGCGG	.	25.0	22.0	64.0	0.0	.	523
FBLN2	2199	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	13612069	13612069	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	FBLN2	NM_001998	exon2	c.G214C	p.D72H	TACTATGACTGCC	.	412.0	255.0	227.0	0.0	.	91
FOXE1	2304	broad.mit.edu;mdanderson.org	37	9	100616350	100616350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	FOXE1	NM_004473	exon1	c.G154A	p.G52R	CAGCGCGGGAAGC	.	22.0	7.0	28.0	0.0	.	130
GJB4	127534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35227120	35227120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	GJB4	NM_153212	exon2	c.C265A	p.L89M	CCCTCACTGCTCG	.	105.0	50.0	123.0	0.0	.	92
GPR84	53831	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54756956	54756956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	GPR84	NM_020370	exon2	c.T680C	p.V227A	CTGGCCACATGGT	.	97.0	40.0	95.0	0.0	.	523
HADH	3033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	108940796	108940796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	HADH	NM_005327	exon4	c.C520T	p.P174S	TTCAACCCAGTGC	.	114.0	55.0	121.0	0.0	.	91
HSPG2	3339	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	22183660	22183660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	HSPG2	NM_005529	exon44	c.G5423A	p.R1808H	TGCAGGCGGGTCC	.	202.0	88.0	235.0	0.0	.	141
HTRA2	27429	broad.mit.edu;mdanderson.org	37	2	74757144	74757144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	HTRA2	NM_013247	exon1	c.C11T	p.P4L	CTGCGCCGAGGGC	.	17.0	5.0	25.0	0.0	.	91
ITIH5	80760	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7608182	7608182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ITIH5	NM_030569	exon13	c.G2338T	p.V780L	CCACCACCACACT	.	158.0	64.0	198.0	0.0	.	92
IZUMO2	126123	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50666320	50666320	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	IZUMO2	NM_152358	exon1	c.C132T	p.F44F	CAACTGGAAGCGA	.	182.0	76.0	197.0	0.0	.	90
KDM6B	23135	broad.mit.edu;bcgsc.ca	37	17	7753448	7753448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	KDM6B	NM_001080424	exon13	c.G3626A	p.R1209Q	ACCCTCGAAATCC	.	81.0	5.0	163.0	0.0	.	205
KIAA1432	57589	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5742878	5742878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	KIAA1432	NM_001206557	exon9	c.A911G	p.N304S	TTTGGAATAAAAC	.	145.0	73.0	156.0	2.0	.	90
KRT84	3890	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	52771877	52771877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	KRT84	NM_033045	exon9	c.G1744T	p.G582C	TGCGGCCGCCGCT	.	163.0	72.0	210.0	0.0	.	91
MAN2A1	4124	ucsc.edu;bcgsc.ca	37	5	109091087	109091087	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MAN2A1	NM_002372	exon5	c.A765G	p.E255E	TGATGAAGCTACT	.	143.0	68.0	150.0	2.0	.	92
MED25	81857	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50333046	50333046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MED25	NM_030973	exon6	c.G529A	p.G177R	CAGCGGGGGATCC	.	167.0	83.0	147.0	0.0	.	91
MFSD5	84975	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53646714	53646714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MFSD5	NM_001170790	exon2	c.C416T	p.A139V	GAAGGGCCTGCAG	.	174.0	82.0	149.0	0.0	.	93
MSX1	4487	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	4864457	4864457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MSX1	NM_002448	exon2	c.C499T	p.R167C	ACCCTCCGCAAAC	.	91.0	37.0	83.0	0.0	.	90
MTF2	22823	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	93545089	93545089	+	Splice_Site	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MTF2	NM_001164392	exon1	c.5+1G>T	.	AATGAGGTGAGAG	.	104.0	53.0	127.0	0.0	.	92
MTTP	4547	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100532580	100532580	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MTTP	NM_000253	exon15	c.C1959T	p.Y653Y	TCAGTACATTGGG	.	142.0	68.0	144.0	0.0	.	93
MYH4	4622	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10354170	10354170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MYH4	NM_017533	exon29	c.C3908A	p.S1303Y	AGCTGAGAAACCA	.	145.0	122.0	250.0	0.0	.	102
NCF2	4688	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183532683	183532683	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NCF2	NM_001127651	exon13	c.A1064C	p.K355T	TGCACCTTGAGTG	.	301.0	57.0	135.0	0.0	.	93
NDST2	8509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75566200	75566200	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NDST2	NM_003635	exon6	c.T1281C	p.A427A	GGCCACAGCATAC	.	60.0	28.0	95.0	0.0	.	91
NEK6	10783	hgsc.bcm.edu;bcgsc.ca	37	9	127101926	127101926	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NEK6	NM_001166171	exon9	c.G801T	p.L267L	GTCCCTGGGCTGT	.	238.0	10.0	257.0	0.0	.	334
NELFA	7469	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1993397	1993397	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_005663	exon2	c.T289G	p.S97A	GGTCCGAGTCGAG	.	133.0	44.0	121.0	0.0	.	.
NLGN4X	57502	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	6069292	6069292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NLGN4X	NM_181332	exon2	c.G216T	p.Q72H	TAAGTACTGCTCC	.	305.0	138.0	382.0	0.0	.	195
NMBR	4829	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	142400004	142400004	+	Silent	SNP	C	C	T	rs149123905		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NMBR	NM_002511	exon2	c.G459A	p.T153T	CCCTGACGTCTGC	.	162.0	20.0	134.0	0.0	C|1.000;T|0.000	946
OR11G2	390439	ucsc.edu;bcgsc.ca	37	14	20666407	20666407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	OR11G2	NM_001005503	exon1	c.G913C	p.E305Q	AAGAATGAAGCTG	.	217.0	115.0	240.0	2.0	.	70
OR4C12	283093	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	50003747	50003747	+	Silent	SNP	A	A	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	OR4C12	NM_001005270	exon1	c.T291A	p.A97A	GGCTTGAGCCATA	.	210.0	99.0	226.0	0.0	.	93
OR5V1	81696	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29323162	29323162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	OR5V1	NM_030876	exon1	c.G811T	p.D271Y	ACCTATCTTTCTT	.	132.0	67.0	93.0	1.0	.	72
PARP14	54625	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122418450	122418450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	PARP14	NM_017554	exon6	c.G1049A	p.R350H	TGAGGCGTTGTCA	.	141.0	59.0	140.0	0.0	.	525
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151372542	151372542	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	PRKAG2	NM_016203	exon4	c.A648G	p.P216P	TGCCAGTGGAGGC	.	71.0	59.0	163.0	0.0	.	658
RASSF10	644943	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	13031942	13031942	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_001080521	exon1	c.G819T	p.V273V	CTACGTGCAGGAC	.	364.0	169.0	454.0	0.0	.	.
RAVER2	55225	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65243382	65243382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RAVER2	NM_018211	exon3	c.A393C	p.K131N	AGGAAAAGACTTA	.	163.0	79.0	170.0	0.0	.	135
RHBDF2	79651	hgsc.bcm.edu;bcgsc.ca	37	17	74473785	74473787	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RHBDF2	NM_024599	exon7	c.840_842del	p.280_281del	ACCACATCCTCCT	.	40.0	28.0	88.0	0.0	.	90
RP1L1	94137	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	10480350	10480350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RP1L1	NM_178857	exon2	c.A362G	p.E121G	TTTCTCTCCTGTG	.	26.0	4.0	63.0	1.0	.	139
RPS6KA3	6197	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	20194413	20194413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RPS6KA3	NM_004586	exon13	c.G1057T	p.D353Y	ATGTATCTTCAGG	.	356.0	146.0	317.0	0.0	.	1504
SCN1A	6323	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	166854614	166854614	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SCN1A	NM_001165963	exon23	c.G4410A	p.G1470G	GAAGGACCCAAAG	.	230.0	102.0	254.0	0.0	.	147
SEMA3E	9723	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83029465	83029465	+	Silent	SNP	T	T	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SEMA3E	NM_012431	exon11	c.A1245C	p.I415I	AGGTTTTATGGCC	.	178.0	157.0	403.0	0.0	.	93
SIGLEC1	6614	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	3672111	3672111	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SIGLEC1	NM_023068	exon17	c.C4467T	p.H1489H	CTCCGCGTGCAGC	.	359.0	172.0	364.0	0.0	.	167
SLITRK4	139065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	142717432	142717432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SLITRK4	NM_001184750	exon2	c.T1493C	p.L498S	CTAGCTAAGGGTG	.	245.0	114.0	274.0	0.0	.	193
SOGA1	140710	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35437068	35437068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_080627	exon8	c.C2662A	p.Q888K	ATTTCTGCTCCAG	.	61.0	25.0	88.0	0.0	.	.
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16255127	16255127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SPEN	NM_015001	exon11	c.G2392C	p.D798H	ACTTTTGATCCGG	.	43.0	16.0	45.0	0.0	.	298
SYNE1	23345	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152740820	152740820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SYNE1	NM_033071	exon40	c.C5326A	p.Q1776K	CAAATTGCTGGTG	.	247.0	79.0	189.0	0.0	.	607
TCEANC	170082	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	13681572	13681572	+	Silent	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TCEANC	NM_152634	exon4	c.T1035A	p.L345L	AACACTTTTCCTT	.	150.0	72.0	158.0	0.0	.	41
TMEM215	401498	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32784212	32784212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TMEM215	NM_212558	exon2	c.G31T	p.G11W	AGGACTGGGCTGG	.	432.0	175.0	390.0	1.0	.	90
TNR	7143	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175360557	175360557	+	Silent	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TNR	NM_003285	exon7	c.G1374T	p.V458V	AGCAATCACTCCC	.	184.0	135.0	92.0	1.0	.	324
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7577565	7577565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	TP53,NS,carcinoma,-1	TP53	NM_000546	exon7	c.A716G	p.N239S	GAACTGTTACACA	.	111.0	96.0	266.0	0.0	.	70225
TTC22	55001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55248004	55248004	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TTC22	NM_001114108	exon6	c.C1167T	p.I389I	CTGGCCGATGTCC	.	68.0	24.0	42.0	0.0	.	90
TTR	7276	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29172906	29172906	+	Silent	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TTR	NM_000371	exon2	c.T117A	p.A39A	AGATGCTGTCCGA	.	144.0	63.0	145.0	0.0	.	91
USP33	23032	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78183652	78183652	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	USP33	NM_015017	exon18	c.A1911G	p.L637L	GCCTTCTAGCGGA	.	175.0	84.0	196.0	0.0	.	659
VSX1	30813	hgsc.bcm.edu;broad.mit.edu	37	20	25057157	25057157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	VSX1	NM_014588	exon5	c.A838G	p.R280G	GCTTCCTTATCAT	.	97.0	4.0	88.0	0.0	.	90
VWA5A	4013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124013240	124013240	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	VWA5A	NM_014622	exon16	c.T2115C	p.G705G	CCTAGGTATGAGT	.	90.0	40.0	103.0	0.0	.	92
WDR44	54521	bcgsc.ca;mdanderson.org	37	X	117566745	117566745	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	WDR44	NM_001184965	exon13	c.T1739A	p.V580E	AATAGGTATGCAG	.	305.0	18.0	295.0	0.0	.	133
XYLT1	64131	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	17211555	17211555	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	XYLT1	NM_022166	exon11	c.C2505A	p.T835T	GAATTTGGTCTCT	.	216.0	106.0	218.0	0.0	.	94
ZFP42	132625	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	188924586	188924586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ZFP42	NM_174900	exon4	c.C625A	p.L209I	AAGCATCTCCTCA	.	73.0	21.0	89.0	1.0	.	228
TBC1D9B	23061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	179331759	179331760	+	Missense_Mutation	DNP	GG	GG	AA	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	.	.	.	p.P58S	GGTAAGGGGCCAC	.	135.0	64.0	186.0	0.0	.	.