Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ARHGAP22	58504	ucsc.edu;bcgsc.ca	37	10	49667742	49667742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	ARHGAP22	NM_001256024	exon5	c.A692G	p.K231R	AGTGGCTTCTCCC	.	48.0	4.0	54.0	0.0	.	228
BBS9	27241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	33192380	33192380	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	BBS9	NM_014451	exon3	c.A180G	p.G60G	AACAGGAGATGGA	.	51.0	5.0	62.0	0.0	.	230
DOK7	285489	broad.mit.edu;bcgsc.ca	37	4	3487277	3487277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	DOK7	NM_173660	exon5	c.T544C	p.F182L	GGCGTCTTCTTCC	.	104.0	8.0	197.0	1.0	.	91
ERBB4	2066	broad.mit.edu;bcgsc.ca	37	2	212251837	212251837	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	ERBB4	NM_005235	exon27	c.A3222G	p.E1074E	TCCTTGTTCAGCA	.	247.0	11.0	330.0	2.0	.	1461
FCGBP	8857	ucsc.edu;bcgsc.ca	37	19	40424149	40424149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	FCGBP	NM_003890	exon4	c.C2054T	p.A685V	CAGACAGCGAAGG	.	66.0	6.0	81.0	1.0	.	98
GDAP2	54834	broad.mit.edu;bcgsc.ca	37	1	118441791	118441791	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	GDAP2	NM_017686	exon7	c.A684G	p.K228K	CTCCTCTTTTAAT	.	147.0	6.0	183.0	0.0	.	92
KIAA0195	9772	broad.mit.edu;bcgsc.ca	37	17	73488633	73488633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	KIAA0195	NM_014738	exon15	c.T1675C	p.S559P	AGCCTGTCCCAGG	.	84.0	8.0	91.0	0.0	.	91
OR10K1	391109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158435869	158435869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	OR10K1	NM_001004473	exon1	c.A518G	p.Q173R	CCAACCAGCTCCA	.	447.0	18.0	538.0	0.0	.	69
OR2C3	81472	hgsc.bcm.edu;broad.mit.edu	37	1	247694952	247694952	+	Missense_Mutation	SNP	G	G	T	rs201468915	alternate_allele	TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	OR2C3	NM_198074	exon2	c.C862A	p.P288T	TAAGTGGGTTCAG	.	147.0	7.0	145.0	0.0	G|0.999;A|0.000	70
OR2M3	127062	broad.mit.edu;bcgsc.ca	37	1	248366692	248366692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	OR2M3	NM_001004689	exon1	c.T323C	p.L108P	CACTGCTTGGCTC	.	372.0	23.0	453.0	2.0	.	70
TTBK1	84630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43223474	43223474	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	TTBK1	NM_032538	exon9	c.G741A	p.Q247Q	GGAACAGGTAGGG	.	53.0	6.0	78.0	0.0	.	353
WDFY3	23001	broad.mit.edu;bcgsc.ca	37	4	85687056	85687056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10X-01A-11D-A12Z-10	TCGA-BC-A10X-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36938443-c826-4abe-aaf6-dd7217b07f51	4285989b-f8d8-4ced-99a1-894ff2b37cf3	.	WDFY3	NM_014991	exon32	c.T5095C	p.S1699P	GAATAGACTGATT	.	124.0	6.0	149.0	1.0	.	93