Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCD1	215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153001604	153001604	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ABCD1	NM_000033	exon3	c.G1120C	p.E374Q	AAGAAGGAGGAGG	.	129.0	29.0	193.0	0.0	.	130
ABHD14B	84836	broad.mit.edu;bcgsc.ca	37	3	52003453	52003453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ABHD14B	NM_032750	exon4	c.G622A	p.G208R	GGAGCCCCTGCAG	.	86.0	5.0	129.0	0.0	.	90
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109637260	109637260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ACACB	NM_001093	exon17	c.C2681T	p.P894L	ACGATCCTACAGT	.	83.0	15.0	91.0	0.0	.	98
ACTR3	10096	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	114691952	114691952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ACTR3	NM_005721	exon6	c.G529T	p.D177Y	ACTCATGTCATTC	.	40.0	8.0	86.0	1.0	.	91
AKAP6	9472	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	33165314	33165314	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	AKAP6	NM_004274	exon9	c.A2998T	p.K1000X	CTTTACAAGGTTA	.	143.0	44.0	225.0	1.0	.	733
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37505198	37505198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ANKRD30A	NM_052997	exon32	c.G2791C	p.G931R	CGTACAGGAAAAA	.	576.0	57.0	475.0	0.0	.	161
ARFGAP2	84364	broad.mit.edu;bcgsc.ca	37	11	47195386	47195387	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ARFGAP2	NM_032389	exon6	c.486_487insC	p.P162fs	CCAGGCAGGGGGC	.	28.0	14.0	39.0	0.0	.	69
ARNTL	406	ucsc.edu;bcgsc.ca	37	11	13398211	13398211	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ARNTL	NM_001030272	exon15	c.C1347T	p.D449D	CGGGGACCCAACC	.	35.0	4.0	29.0	0.0	.	90
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42580401	42580401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ATP8A1	NM_001105529	exon12	c.G1004A	p.G335D	GCGCCACCATCTG	.	91.0	14.0	117.0	0.0	.	92
ATP9B	374868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	77108133	77108134	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ATP9B	NM_198531	exon25	c.2840_2841insTG	p.A947fs	TCCAGGCTGTGTT	.	240.0	62.0	392.0	0.0	.	93
BAIAP2	10458	ucsc.edu;bcgsc.ca	37	17	79060379	79060379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	BAIAP2	NM_001144888	exon6	c.A488G	p.Q163R	AGCTGCAGGTAGG	.	49.0	6.0	92.0	1.0	.	90
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52436687	52436688	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	BAP1	NM_004656	exon16	c.1987_1988insT	p.D663_D664delinsX	GGTCATCAATCTG	.	89.0	65.0	226.0	0.0	.	1032
BLOC1S4	55330	broad.mit.edu;mdanderson.org	37	4	6718242	6718242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_018366	exon1	c.G306T	p.M102I	GGGCATGCTGGAC	.	15.0	4.0	11.0	0.0	.	.
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	756999	756999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	C19orf21	NM_173481	exon2	c.G53C	p.G18A	ACCGTGGCACCGG	.	116.0	15.0	113.0	0.0	.	91
C19orf80	55908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11350899	11350899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_018687	exon2	c.G386T	p.S129I	GGGACAGCGTGCA	.	65.0	26.0	89.0	0.0	.	.
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3735113	3735113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	C20orf27	NM_001039140	exon5	c.G430A	p.E144K	GTATCTCCTCTTT	.	83.0	30.0	61.0	0.0	.	90
C5orf22	55322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31534433	31534433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	C5orf22	NM_018356	exon2	c.G136C	p.V46L	AGTAATGTAAGTT	.	328.0	64.0	505.0	0.0	.	92
CAMTA2	23125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4883278	4883278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CAMTA2	NM_001171167	exon9	c.G1408A	p.D470N	TGTCATCATCTTG	.	29.0	9.0	49.0	0.0	.	91
CASP9	842	broad.mit.edu;bcgsc.ca	37	1	15821775	15821775	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CASP9	NM_001229	exon7	c.T1041C	p.T347T	TGGGAAAGTAGAG	.	110.0	6.0	151.0	0.0	.	1083
CCDC39	339829	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180332768	180332768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CCDC39	NM_181426	exon20	c.A2767G	p.R923G	ATGGCCTAGAAGG	.	102.0	38.0	140.0	1.0	.	72
CDC5L	988	broad.mit.edu;bcgsc.ca	37	6	44397460	44397460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CDC5L	NM_001253	exon14	c.T1904C	p.V635A	AGGATGTTTTGGT	.	113.0	6.0	182.0	0.0	.	229
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85955343	85955343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CDHR1	NM_001171971	exon2	c.T149C	p.V50A	CCCCTGTAGGTGA	.	66.0	17.0	96.0	0.0	.	91
CENPJ	55835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25459431	25459431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CENPJ	NM_018451	exon13	c.A3460T	p.S1154C	GATGACTGATTTC	.	115.0	31.0	258.0	0.0	.	92
CENPN	55839	ucsc.edu;bcgsc.ca	37	16	81058329	81058329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CENPN	NM_001100624	exon8	c.A643G	p.T215A	TTTGAAACTCACA	.	38.0	4.0	91.0	0.0	.	90
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135107050	135107050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CNOT4	NM_001190850	exon3	c.A227G	p.Q76R	ATCCTTTGCAGCT	.	206.0	34.0	272.0	0.0	.	90
COL6A6	131873	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130368255	130368255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	COL6A6	NM_001102608	exon32	c.C5582A	p.A1861E	CGGGGGCACACAC	.	139.0	21.0	115.0	1.0	.	76
COMMD3	23412	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	22606865	22606866	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	COMMD3	NM_012071	exon2	c.192_193insG	p.A64fs	TCATGCAGCAGCT	.	368.0	63.0	305.0	0.0	.	115
CRMP1	1400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5837733	5837733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CRMP1	NM_001014809	exon11	c.G1532A	p.R511K	CCTTTCCTTGGGT	.	91.0	18.0	142.0	0.0	.	92
CRTC2	200186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153924495	153924495	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CRTC2	NM_181715	exon10	c.A996G	p.P332P	CTCACCTGGTGCA	.	65.0	21.0	77.0	1.0	.	228
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75968322	75968322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CSPG4	NM_001897	exon10	c.G6538A	p.E2180K	CGGCCTCGGGGAC	.	33.0	12.0	23.0	0.0	.	229
CYP7A1	1581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	59409293	59409293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CYP7A1	NM_000780	exon3	c.C778T	p.R260C	ACATGCGCAGGCT	.	172.0	41.0	203.0	0.0	.	91
DDB2	1643	ucsc.edu;bcgsc.ca	37	11	47260382	47260382	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	DDB2	NM_000107	exon10	c.A1266G	p.E422E	GGAGGAAGCCAGG	.	38.0	4.0	43.0	0.0	.	971
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31496394	31496394	+	Silent	SNP	G	G	A	rs149776669		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	DMD	NM_004006	exon59	c.C8766T	p.S2922S	GTCAGCGGAGTGC	.	285.0	47.0	246.0	1.0	G|1.000;A|0.000	265
DUSP10	11221	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	221912367	221912367	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	DUSP10	NM_007207	exon2	c.C720T	p.T240T	TTCATTGGTATTC	.	156.0	19.0	234.0	0.0	.	659
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	184039489	184039489	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	EIF4G1	NM_001194946	exon11	c.G1138T	p.E380X	GAACCAGAGGTGG	.	135.0	21.0	163.0	0.0	.	344
ENPP7	339221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77711821	77711821	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ENPP7	NM_178543	exon5	c.G1353A	p.V451V	GACCGTGATTCTT	.	38.0	16.0	43.0	0.0	.	92
FAHD2A	51011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96072737	96072737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FAHD2A	NM_016044	exon3	c.C294A	p.F98L	AACCTTCCTGGCT	.	391.0	51.0	547.0	1.0	.	91
FAM133A	286499	broad.mit.edu;bcgsc.ca	37	X	92965114	92965114	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FAM133A	NM_173698	exon4	c.A696G	p.K232K	CAAGAAACATAGT	.	91.0	4.0	238.0	0.0	.	130
FAM134B	54463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16474884	16474884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FAM134B	NM_001034850	exon9	c.C1460T	p.S487L	AAACCTGAAGACT	.	115.0	54.0	135.0	0.0	.	137
FAM160B2	64760	ucsc.edu;bcgsc.ca	37	8	21958157	21958157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_022749	exon11	c.A1394G	p.E465G	CCCACGAGGGGAT	.	52.0	4.0	71.0	2.0	.	.
FBXO40	51725	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121341432	121341432	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FBXO40	NM_016298	exon3	c.A1156T	p.T386S	GGGATCACTGTGG	.	99.0	8.0	130.0	0.0	.	273
FBXO9	26268	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52957296	52957296	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FBXO9	NM_012347	exon7	c.C753T	p.Y251Y	TCCGTACACGTCC	.	257.0	49.0	398.0	2.0	.	227
FLNA	2316	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153595782	153595782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FLNA	NM_001456	exon5	c.C851T	p.A284V	GCACGGGCTTTCT	.	35.0	9.0	60.0	0.0	.	599
FLNC	2318	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128489494	128489494	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FLNC	NM_001127487	exon30	c.G5061A	p.G1687G	GGATGGGGCAGAG	.	73.0	10.0	94.0	0.0	.	141
FOXH1	8928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145700607	145700607	+	Missense_Mutation	SNP	C	C	A	rs150426097	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FOXH1	NM_003923	exon2	c.G212T	p.R71M	TCTTCCCTGAAGA	.	58.0	13.0	59.0	0.0	C|1.000;T|0.000	226
FZD10	11211	broad.mit.edu;bcgsc.ca	37	12	130648989	130648989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FZD10	NM_007197	exon1	c.T1502C	p.V501A	CCGCCGTGGAGAT	.	55.0	7.0	73.0	0.0	.	658
GABRA5	2558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	27114447	27114447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GABRA5	NM_001165037	exon3	c.T52G	p.F18V	CTTCTCTTTTGTA	.	234.0	48.0	409.0	1.0	.	91
GALNT5	11227	ucsc.edu;bcgsc.ca	37	2	158167786	158167786	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GALNT5	NM_014568	exon10	c.A2749T	p.I917F	CAAAAGATCCTGA	.	58.0	9.0	88.0	2.0	.	290
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	147380863	147380863	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GJA8	NM_005267	exon2	c.C781T	p.Q261X	TCCATCCAGAAAG	.	66.0	31.0	74.0	0.0	.	138
GLO1	2739	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	38670784	38670784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GLO1	NM_006708	exon1	c.C47T	p.A16V	CTGAGGGCGGCCT	.	51.0	9.0	76.0	0.0	.	227
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155723018	155723018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GON4L	NM_001037533	exon29	c.G5819A	p.R1940K	CCCTTTCTGGTGG	.	223.0	28.0	264.0	0.0	.	93
GRN	2896	ucsc.edu;bcgsc.ca	37	17	42428482	42428482	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GRN	NM_002087	exon8	c.C786T	p.S262S	CCTCTCCAAGGAG	.	42.0	4.0	73.0	0.0	.	517
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142964755	142964755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GSTK1	NM_001143679	exon5	c.C634A	p.L212M	GGACTTCTGGAAA	.	108.0	42.0	103.0	0.0	.	90
HPD	3242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122284995	122284995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	HPD	NM_002150	exon10	c.A722G	p.N241S	GGCTCATTGATGG	.	105.0	14.0	125.0	0.0	.	90
IFNW1	3467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21141286	21141286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	IFNW1	NM_002177	exon1	c.G284T	p.R95L	GAGGAGCGCTCTG	.	30.0	9.0	113.0	0.0	.	90
IMPG2	50939	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100972618	100972618	+	Silent	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	IMPG2	NM_016247	exon11	c.A1161T	p.G387G	CAAAACTCCTCTC	.	57.0	18.0	74.0	1.0	.	93
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62330235	62330235	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	INADL	NM_176877	exon20	c.A2765C	p.Q922P	AGTCTCAAGAGGC	.	35.0	19.0	83.0	0.0	.	94
INF2	64423	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105175658	105175658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	INF2	NM_022489	exon11	c.A1990G	p.T664A	GGAGATACCACCA	.	37.0	4.0	63.0	0.0	.	492
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41377743	41377743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	INO80	NM_017553	exon7	c.G697A	p.E233K	GTTCTTCATCTCT	.	315.0	62.0	548.0	0.0	.	72
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5154891	5154891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	KCNA5	NM_002234	exon1	c.A1578T	p.E526D	CCGGGAAACGGAT	.	64.0	14.0	114.0	0.0	.	715
KLF8	11279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	56291629	56291629	+	Missense_Mutation	SNP	G	G	A	rs144407506		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	KLF8	NM_001159296	exon4	c.G98A	p.R33Q	CTGTTCGGAACAG	.	108.0	17.0	175.0	0.0	G|1.000;A|0.000	131
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135025036	135025036	+	Missense_Mutation	SNP	G	G	T	rs151235501	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	KNDC1	NM_152643	exon22	c.G4019T	p.G1340V	ACAGCGGGCTGCT	.	65.0	23.0	74.0	0.0	G|1.000;A|0.000	229
LILRB4	11006	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55175343	55175343	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	LILRB4	NM_006847	exon3	c.C202G	p.P68A	CCAGCACCCTGGG	.	351.0	69.0	397.0	1.0	.	93
LMTK3	114783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49013717	49013717	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	LMTK3	NM_001080434	exon3	c.A296C	p.K99T	CTCACCTTGAAGC	.	125.0	19.0	143.0	0.0	.	1357
MAK16	84549	ucsc.edu;bcgsc.ca	37	8	33354202	33354202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MAK16	NM_032509	exon8	c.G582T	p.E194D	ACAGGAGGCAGAG	.	41.0	4.0	83.0	0.0	.	69
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13212934	13212934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MCM10	NM_018518	exon3	c.A20G	p.N7S	AAGACAATCTGTC	.	247.0	127.0	168.0	0.0	.	653
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38189358	38189358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MED24	NM_014815	exon8	c.G773A	p.G258D	GTCTCGCCTGTCA	.	37.0	18.0	87.0	0.0	.	187
METTL2A	339175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	60501620	60501620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	METTL2A	NM_181725	exon2	c.G151A	p.E51K	GCGGCGGAGAGAA	.	76.0	20.0	127.0	0.0	.	248
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18358243	18358243	+	Silent	SNP	G	G	A	rs201286172		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MICAL3	NM_001136004	exon19	c.C2475T	p.P825P	AGAGGCGGGGCGG	.	59.0	12.0	73.0	0.0	.	68
MROH2B	133558	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	41055918	41055918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_173489	exon10	c.A959C	p.E320A	ACTTGTTCATCAA	.	122.0	12.0	157.0	1.0	.	.
MRPS22	56945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139062905	139062905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MRPS22	NM_020191	exon1	c.C37T	p.L13F	TGGAGCCTCTTGA	.	54.0	16.0	49.0	0.0	.	93
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56582147	56582147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MTMR4	NM_004687	exon12	c.C1292T	p.T431M	TCCAACGTCCTGT	.	47.0	12.0	81.0	0.0	.	91
MYBPC2	4606	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	50957533	50957533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MYBPC2	NM_004533	exon18	c.C1921A	p.P641T	CCAGACCCCCCGG	.	74.0	15.0	59.0	1.0	.	67
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23851737	23851737	+	Missense_Mutation	SNP	C	C	A	rs61731171	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MYH6	NM_002471	exon38	c.G5696T	p.R1899L	ACCTTGCGGAACT	.	132.0	26.0	199.0	0.0	C|0.986;T|0.014	94
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27449219	27449219	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MYO18A	NM_078471	exon3	c.A1052C	p.K351T	CACACCTTCTCCG	.	126.0	74.0	262.0	0.0	.	22
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	12666487	12666487	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MYOCD	NM_001146312	exon14	c.C2487T	p.P829P	CAAGCCCTCGGCT	.	56.0	34.0	121.0	0.0	.	93
N4BP2L1	90634	ucsc.edu;bcgsc.ca	37	13	32981893	32981893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	N4BP2L1	NM_052818	exon2	c.T196C	p.F66L	TGGGAAAGTCATG	.	33.0	4.0	47.0	0.0	.	91
NOL6	65083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33468831	33468831	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	NOL6	NM_022917	exon8	c.G1066C	p.V356L	AGACAACCAGCAT	.	63.0	22.0	114.0	0.0	.	92
NPLOC4	55666	ucsc.edu;bcgsc.ca	37	17	79567437	79567437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	NPLOC4	NM_017921	exon9	c.G851A	p.S284N	TCCAAGCTGTTCT	.	25.0	4.0	62.0	0.0	.	24
OR2G6	391211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248684959	248684959	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR2G6	NM_001013355	exon1	c.C12T	p.T4T	GGAAACCAACAAC	.	215.0	74.0	250.0	0.0	.	71
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248756794	248756794	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR2T10	NM_001004693	exon1	c.C276A	p.I92I	GACCGAGATGGTC	.	175.0	30.0	219.0	0.0	.	69
OR2T4	127074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248525606	248525606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR2T4	NM_001004696	exon1	c.C724A	p.P242T	CTCATCCCTGTGG	.	1004.0	67.0	1155.0	0.0	.	68
OR2T6	254879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248551626	248551626	+	Silent	SNP	C	C	T	rs148186126		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	OR2T6,arm,malignant_melanoma,0	OR2T6	NM_001005471	exon1	c.C717T	p.A239A	CTTTGCCACCTGC	.	310.0	86.0	307.0	0.0	.	71
OR52E8	390079	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5878726	5878726	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR52E8	NM_001005168	exon1	c.G207T	p.L69L	CATGGCCAGGAAG	.	111.0	21.0	235.0	1.0	.	70
OR5R1	219479	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	56185374	56185374	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR5R1	NM_001004744	exon1	c.G335C	p.C112S	AGGAAACACTCAG	.	23.0	7.0	67.0	1.0	.	70
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80732951	80732951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_173591	exon42	c.G4930A	p.G1644R	CCAGCTGGACTAA	.	105.0	14.0	186.0	0.0	.	.
PABPC4L	132430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	135121364	135121364	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_001114734	exon2	c.C985T	p.R329X	CCTGTCGCTCGAC	.	41.0	7.0	94.0	0.0	.	.
PARP2	10038	ucsc.edu;bcgsc.ca	37	14	20820418	20820418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PARP2	NM_005484	exon7	c.C551T	p.T184M	ACAAAACGAAAAA	.	25.0	4.0	34.0	0.0	.	661
PCDH19	57526	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99658623	99658623	+	Silent	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCDH19	NM_001184880	exon2	c.A2187T	p.I729I	TCCTTTTATAAAA	.	169.0	42.0	278.0	1.0	.	110
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237874	140237874	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCDHA10	NM_031859	exon1	c.T2241C	p.S747S	CTGGTCTTACTCG	.	134.0	29.0	285.0	0.0	.	99
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140746244	140746244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCDHGA5	NM_032054	exon1	c.G2347A	p.E783K	AGTGAAGAGAGCT	.	81.0	16.0	161.0	0.0	.	35
PCNXL4	64430	ucsc.edu;bcgsc.ca	37	14	60592539	60592539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_022495	exon9	c.A2563G	p.M855V	TCTAATATGGTAA	.	39.0	4.0	115.0	0.0	.	.
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1484101	1484101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCSK4	NM_017573	exon9	c.G1094A	p.C365Y	TCTGTGCACCCGT	.	128.0	71.0	68.0	0.0	.	90
PDE6B	5158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	651215	651215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PDE6B	NM_001145291	exon10	c.A1333G	p.K445E	AACCGCAAGGACA	.	192.0	32.0	173.0	0.0	.	90
PDE8A	5151	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85666356	85666356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PDE8A	NM_002605	exon19	c.C2017T	p.H673Y	ACAAAGCACTTTG	.	86.0	17.0	138.0	2.0	.	94
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	18972509	18972509	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PHKA2	NM_000292	exon2	c.T100G	p.S34A	TGGCTGACAGCAG	.	60.0	14.0	95.0	0.0	.	131
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160807990	160807990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PLA2R1	NM_001195641	exon24	c.C3401A	p.T1134N	TACCAAGTCATAT	.	434.0	137.0	574.0	0.0	.	93
PLS1	5357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142388293	142388293	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PLS1	NM_001172312	exon3	c.C132T	p.S44S	AGCAAGCCTTCCT	.	79.0	9.0	107.0	0.0	.	91
PRICKLE2	166336	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64145681	64145681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PRICKLE2	NM_198859	exon4	c.G331A	p.E111K	AGTTTTCGCGTTT	.	146.0	35.0	224.0	2.0	.	95
PRICKLE3	4007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49032070	49032070	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PRICKLE3	NM_006150	exon9	c.C1800T	p.R600R	CCCTGCGCGAGAG	.	94.0	19.0	102.0	0.0	.	193
PRR12	57479	broad.mit.edu;mdanderson.org	37	19	50124861	50124861	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PRR12	NM_020719	exon11	c.G5703A	p.S1901S	GCTGTCGCTAAGC	.	31.0	5.0	26.0	0.0	.	70
PSG11	5680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	43529064	43529064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_002785	exon2	c.G209A	p.G70E	ATTTGCCCTTTGT	.	203.0	27.0	250.0	0.0	.	.
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43763032	43763032	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PSG9	NM_002784	exon4	c.A965C	p.N322T	ACTGGGTTACTGC	.	124.0	29.0	96.0	0.0	.	92
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114380695	114380695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PTPN22	NM_015967	exon13	c.C1327A	p.P443T	TTATTGGCACCTT	.	38.0	14.0	129.0	0.0	.	227
RAPGEF3	10411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48135289	48135289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RAPGEF3	NM_001098531	exon19	c.T1922C	p.L641P	CCTACCAGCTCAT	.	143.0	30.0	141.0	0.0	.	660
RNASEL	6041	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182554500	182554500	+	Missense_Mutation	SNP	T	T	C	rs200144732		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RNASEL	NM_021133	exon2	c.A1442G	p.Y481C	TGGGTGTATCCAC	.	223.0	42.0	374.0	1.0	T|0.999;C|0.001	336
RPL13	6137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89629361	89629361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RPL13	NM_000977	exon6	c.C547T	p.R183C	AGTCTCCGTATGG	.	120.0	13.0	165.0	0.0	.	90
RTFDC1	51507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	55048453	55048453	+	Splice_Site	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_016407	exon2	c.164+2T>A	.	GGCAGGTATGGTT	.	48.0	11.0	84.0	0.0	.	.
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	237948157	237948157	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RYR2	NM_001035	exon90	c.T13145A	p.L4382Q	TTGGCCTGGATCT	.	77.0	23.0	84.0	0.0	.	158
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	34105063	34105063	+	Splice_Site	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RYR3	NM_001243996	exon72	c.10243-1G>C	.	TTTTCAGTCTGAT	.	56.0	11.0	87.0	0.0	.	520
SCML2	10389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18283818	18283818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SCML2	NM_006089	exon8	c.C835G	p.Q279E	TGACCTGCTGTGT	.	289.0	62.0	461.0	0.0	.	226
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84666319	84666319	+	Silent	SNP	C	C	G	rs143217112	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SEMA3D	NM_152754	exon10	c.G1077C	p.V359V	GCTATACACACAA	.	66.0	15.0	117.0	0.0	C|1.000;T|0.000	138
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50220186	50220186	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SEMA3F	NM_004186	exon9	c.G873T	p.A291A	CCCCGCGGTGTAC	.	24.0	11.0	47.0	0.0	.	279
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7285628	7285628	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SFMBT2	NM_001029880	exon9	c.C1012T	p.L338L	GTCTTAGGTCATC	.	104.0	11.0	93.0	0.0	.	141
SIPA1L1	26037	ucsc.edu;bcgsc.ca	37	14	72139334	72139334	+	Silent	SNP	G	G	T	rs144855084	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SIPA1L1	NM_015556	exon9	c.G3099T	p.P1033P	CACCCCGCGGAGG	.	41.0	4.0	74.0	0.0	G|0.999;A|0.000	156
SIRPG	55423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1629885	1629885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SIRPG	NM_001039508	exon2	c.A243C	p.K81N	GCCTTCTTTTTGA	.	816.0	294.0	1118.0	2.0	.	23
SLC17A9	63910	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61588131	61588131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SLC17A9	NM_022082	exon2	c.C74T	p.A25V	GCCAGGCATGGAC	.	28.0	9.0	47.0	0.0	.	92
SLC9A5	6553	broad.mit.edu;mdanderson.org	37	16	67282983	67282983	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SLC9A5	NM_004594	exon1	c.G66A	p.Q22Q	CACCCAGAAGCCA	.	10.0	6.0	13.0	0.0	.	92
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	11143994	11143994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SMARCA4	NM_003072	exon26	c.G3575A	p.R1192H	CCCACCGCATCGG	.	77.0	15.0	90.0	0.0	.	1523
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	130930247	130930247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SMPD4	NM_017751	exon7	c.C575A	p.P192Q	TCGAACGGATCTG	.	158.0	34.0	184.0	0.0	.	90
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	67992724	67992724	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SOCS6	NM_004232	exon2	c.G820C	p.V274L	GACCTAGTTGTCG	.	164.0	55.0	279.0	0.0	.	721
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41073984	41073984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SPTBN4	NM_020971	exon31	c.G6752A	p.R2251Q	CTGAGCGGCAAGA	.	50.0	15.0	41.0	0.0	.	94
SSX7	280658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	52677345	52677345	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SSX7	NM_173358	exon6	c.A432G	p.K144K	ACTTGGTTTTCCT	.	1049.0	178.0	1399.0	1.0	.	91
ST18	9705	ucsc.edu;bcgsc.ca	37	8	53124658	53124658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ST18	NM_014682	exon8	c.T67C	p.S23P	TTAGTGAATCCAT	.	36.0	4.0	48.0	0.0	.	95
STAG3	10734	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	99800188	99800188	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	STAG3	NM_012447	exon25	c.C2675A	p.S892X	CAGCCTCAGATGT	.	46.0	6.0	71.0	0.0	.	543
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34022586	34022586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SYNJ1	NM_203446	exon23	c.G3062A	p.S1021N	TCTAAACTCATTT	.	237.0	77.0	406.0	0.0	.	232
SYT2	127833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202572235	202572235	+	Silent	SNP	G	G	A	rs141305662	byfrequency	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SYT2	NM_177402	exon4	c.C357T	p.D119D	CTCTGCGTCGTCG	.	95.0	19.0	115.0	0.0	G|0.999;A|0.001	93
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	42606748	42606748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TCF20	NM_181492	exon1	c.T4564A	p.S1522T	TCGGTGAAATCGT	.	323.0	22.0	352.0	0.0	.	95
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104488538	104488538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TDRD9	NM_153046	exon24	c.C2477T	p.T826I	TTAAAACCCTTCC	.	123.0	39.0	268.0	0.0	.	70
TECR	9524	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14676612	14676612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TECR	NM_138501	exon13	c.C856A	p.H286N	GGCAAGCACCGCA	.	104.0	11.0	104.0	1.0	.	90
TFPT	29844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54611472	54611472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TFPT	NM_013342	exon5	c.C503T	p.P168L	CTGGGCGGGGACA	.	93.0	16.0	106.0	0.0	.	658
TM2D2	83877	ucsc.edu;bcgsc.ca	37	8	38851171	38851171	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TM2D2	NM_078473	exon3	c.T324C	p.G108G	GGCCTGACCGCCG	.	29.0	4.0	64.0	0.0	.	90
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138855859	138855859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TMEM173	NM_198282	exon8	c.C1127A	p.T376K	AAATCCGTGCGGA	.	67.0	30.0	116.0	0.0	.	69
TNRC18	84629	ucsc.edu;bcgsc.ca	37	7	5391483	5391483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TNRC18	NM_001080495	exon17	c.T5437C	p.F1813L	CGCTGAAGGAGGA	.	47.0	5.0	65.0	0.0	.	46
TOP3A	7156	ucsc.edu;bcgsc.ca	37	17	18206022	18206022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TOP3A	NM_004618	exon6	c.A515G	p.Q172R	AACACCTGCAGAT	.	35.0	5.0	75.0	0.0	.	228
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7578524	7578524	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	TP53,head_neck,carcinoma,+2	TP53	NM_000546	exon5	c.C406T	p.Q136X	CCAGTTGGCAAAA	.	35.0	21.0	48.0	0.0	.	70225
TRAF3IP1	26146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	239237694	239237694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TRAF3IP1	NM_015650	exon5	c.G626T	p.G209V	ATGGCGGAAACAG	.	203.0	34.0	217.0	0.0	.	228
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31295063	31295063	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TRPM1	NM_001252020	exon27	c.T3891G	p.L1297L	CCGGAGAAGATAC	.	82.0	17.0	138.0	0.0	.	94
TTC5	91875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20763925	20763925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TTC5	NM_138376	exon7	c.A785G	p.Q262R	TCTCGTTGCCGGG	.	106.0	18.0	138.0	0.0	.	91
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	94052959	94052959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_020818	exon21	c.G2290A	p.E764K	GATACCGAAAGAA	.	69.0	19.0	208.0	0.0	.	.
UNC80	285175	broad.mit.edu;bcgsc.ca	37	2	210752981	210752981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	UNC80	NM_032504	exon26	c.A4279G	p.K1427E	GAGAAGAAAGGTA	.	142.0	6.0	199.0	0.0	.	90
URM1	81605	ucsc.edu;bcgsc.ca	37	9	131151971	131151971	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	URM1	NM_030914	exon5	c.C264T	p.D88D	TCAGGACCAGGAC	.	29.0	4.0	57.0	0.0	.	90
WBP11	51729	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14947913	14947913	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	WBP11	NM_016312	exon6	c.A513G	p.S171S	ATAGGCTGAGGTT	.	160.0	36.0	272.0	1.0	.	92
WDR87	83889	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38377028	38377028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_031951	exon6	c.C7166A	p.P2389H	TTCAAAGGGCTTT	.	276.0	61.0	427.0	1.0	.	.
ZNF263	10127	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3335685	3335685	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ZNF263	NM_005741	exon3	c.A573T	p.L191F	AGCATTATCTGCT	.	179.0	32.0	209.0	1.0	.	94
ZNF57	126295	ucsc.edu;bcgsc.ca	37	19	2917541	2917541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ZNF57	NM_173480	exon4	c.T922A	p.Y308N	AAGCCCTATGAAT	.	41.0	4.0	107.0	0.0	.	71
ZSCAN25	221785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99227217	99227217	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_145115	exon8	c.C1209T	p.Y403Y	GCCCTACGTGTGC	.	46.0	11.0	77.0	0.0	.	.
HOXA4	3201	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27168891	27168892	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	GA	GA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	.	.	.	p.HP305QS	GGTGGGGATGGAG	.	343.0	56.0	321.0	1.0	.	.