Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ACBD5	91452	broad.mit.edu	37	10	27499972	27499972	+	Silent	SNP	C	C	T			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr10:27499972C>T	ENST00000396271.3	-	9	1101	c.975G>A	c.(973-975)caG>caA	p.Q325Q	ACBD5_ENST00000375897.3_Silent_p.Q148Q|ACBD5_ENST00000375901.1_Silent_p.Q216Q|ACBD5_ENST00000476758.1_5'UTR|ACBD5_ENST00000375905.4_Silent_p.Q290Q|ACBD5_ENST00000375888.1_Silent_p.Q334Q	NM_145698.3	NP_663736.2	Q5T8D3	ACBD5_HUMAN	acyl-CoA binding domain containing 5	334					transport	integral to membrane|peroxisomal membrane	fatty-acyl-CoA binding			breast(1)|endometrium(1)|large_intestine(3)|lung(7)|prostate(1)	13						CCAAGTAATACTGAAATGGTC	0.373000													8	68					0	0	1	0	0
FAM65A	79567	broad.mit.edu	37	16	67575406	67575406	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr16:67575406C>T	ENST00000540839.3	+	12	1155	c.935C>T	c.(934-936)gCc>gTc	p.A312V	FAM65A_ENST00000422602.2_Missense_Mutation_p.A312V|FAM65A_ENST00000428437.2_Missense_Mutation_p.A306V|FAM65A_ENST00000379312.3_Missense_Mutation_p.A296V|FAM65A_ENST00000042381.4_Missense_Mutation_p.A292V			Q6ZS17	FA65A_HUMAN	family with sequence similarity 65, member A	296						cytoplasm	binding			central_nervous_system(2)|endometrium(3)|kidney(2)|large_intestine(12)|lung(12)|ovary(2)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	39		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		GACCTGTTTGCCGCCCTGCCC	0.572000													4	163					0	0	1	0	0
RASGRP3	25780	broad.mit.edu	37	2	33747057	33747057	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr2:33747057G>A	ENST00000403687.3	+	7	1144	c.404G>A	c.(403-405)aGg>aAg	p.R135K	RASGRP3_ENST00000402538.3_Missense_Mutation_p.R135K|RASGRP3_ENST00000407811.1_Missense_Mutation_p.R135K	NM_001139488.1	NP_001132960.1	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	135					MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			large_intestine(3)|lung(3)|ovary(2)|pancreas(1)|stomach(2)	11	all_hematologic(175;0.115)					GTCACACAGAGGAAAAAAGTA	0.418000													8	86					0	0	1	0	0
CIC	23152	broad.mit.edu	37	19	42791715	42791715	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr19:42791715C>T	ENST00000572681.2	+	6	3396	c.3328C>T	c.(3328-3330)Cgg>Tgg	p.R1110W	CIC_ENST00000575354.2_Missense_Mutation_p.R201W|CIC_ENST00000160740.3_Missense_Mutation_p.R201W			Q96RK0	CIC_HUMAN	capicua transcriptional repressor	201	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding	p.R201W(1)		autonomic_ganglia(1)|breast(5)|central_nervous_system(32)|endometrium(10)|kidney(2)|large_intestine(7)|lung(9)|ovary(7)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	82		Prostate(69;0.00682)				GGACCACATCCGGCGGCCCAT	0.622000			"""Mis, F, S"""		oligodendroglioma								4	37					0	0	1	0	0
AMMECR1	9949	broad.mit.edu	37	X	109459810	109459810	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chrX:109459810C>T	ENST00000262844.5	-	3	802	c.635G>A	c.(634-636)cGg>cAg	p.R212Q	AMMECR1_ENST00000372057.1_Missense_Mutation_p.R89Q|AMMECR1_ENST00000372059.2_Missense_Mutation_p.R175Q	NM_015365.2	NP_056180.1	Q9Y4X0	AMER1_HUMAN	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	212	AMMECR1.									large_intestine(1)|lung(4)|ovary(1)|stomach(1)	7						GCAGAAAAGCCGTGGCAGCTC	0.378000													3	58					0	0	1	0	0
TAOK2	9344	broad.mit.edu	37	16	29994404	29994404	+	Silent	SNP	C	C	G			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr16:29994404C>G	ENST00000308893.4	+	12	2054	c.1011C>G	c.(1009-1011)ccC>ccG	p.P337P	TAOK2_ENST00000543033.1_Silent_p.P337P|TAOK2_ENST00000416441.2_Silent_p.P164P|TAOK2_ENST00000279394.3_Silent_p.P337P	NM_001252043.1|NM_016151.3	NP_001238972.1|NP_057235.2	Q9UL54	TAOK2_HUMAN	TAO kinase 2	337					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			breast(1)|endometrium(3)|large_intestine(5)|lung(8)|ovary(1)|prostate(3)|skin(1)	22						AGGCCGAGCCCTACATGCACC	0.632000													8	143					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164393861	164393861	+	Silent	SNP	C	C	A			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr4:164393861C>A	ENST00000280605.3	-	1	1186	c.1026G>T	c.(1024-1026)ctG>ctT	p.L342L		NM_032136.4	NP_115512.3	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	342						cytoplasm	metal ion binding|transketolase activity			breast(1)|endometrium(4)|kidney(2)|large_intestine(9)|lung(42)|ovary(3)|pancreas(1)|prostate(1)|skin(6)|upper_aerodigestive_tract(1)	70	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGTCACCACTCAGaacaataa	0.428000													5	100					0.0215528	0.0227501	1	1	0
KRCC1	51315	broad.mit.edu	37	2	88327833	88327833	+	Missense_Mutation	SNP	G	G	A	rs148657110		TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr2:88327833G>A	ENST00000347055.3	-	4	643	c.250C>T	c.(250-252)Cgg>Tgg	p.R84W		NM_016618.1	NP_057702.1	Q9NPI7	KRCC1_HUMAN	lysine-rich coiled-coil 1	84										cervix(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(3)|ovary(1)	7						TGAGGCAACCGATTTTCCACT	0.463000													3	69					0	0	1	0	0
UNC79	57578	broad.mit.edu	37	14	94160680	94160680	+	Splice_Site	SNP	G	G	T			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr14:94160680G>T	ENST00000553484.1	+	49	7807		c.e49-1		UNC79_ENST00000393151.2_Splice_Site|UNC79_ENST00000256339.4_Splice_Site|UNC79_ENST00000555664.1_Splice_Site			Q9P2D8	UNC79_HUMAN	unc-79 homolog (C. elegans)							integral to membrane				breast(3)|cervix(2)|endometrium(10)|kidney(7)|large_intestine(18)|liver(1)|lung(64)|ovary(1)|prostate(5)|skin(3)|urinary_tract(4)	118						TGTTGTTTCAGATGGTAGAAA	0.398000													10	47					0.000442599	0.00049467	1	1	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr2:209113112C>T	ENST00000415913.1	-	4	776	c.395G>A	c.(394-396)cGt>cAt	p.R132H	IDH1_ENST00000446179.1_Missense_Mutation_p.R132H|IDH1_ENST00000345146.2_Missense_Mutation_p.R132H			O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132			R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).|R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2774)|p.R132L(59)|p.R132V(1)|p.G131_R132>VL(1)		NS(1)|autonomic_ganglia(2)|biliary_tract(24)|bone(237)|central_nervous_system(3764)|endometrium(3)|haematopoietic_and_lymphoid_tissue(794)|kidney(2)|large_intestine(7)|lung(7)|prostate(6)|skin(5)|soft_tissue(12)|thyroid(22)|urinary_tract(1)	4887				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma								10	64					0	0	1	0	0
CHRNA1	1134	broad.mit.edu	37	2	175618969	175618969	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr2:175618969C>T	ENST00000348749.5	-	5	595	c.518G>A	c.(517-519)gGc>gAc	p.G173D	CHRNA1_ENST00000409323.1_Missense_Mutation_p.G173D|CHRNA1_ENST00000409219.1_Missense_Mutation_p.G173D|AC018890.6_ENST00000442996.1_RNA|CHRNA1_ENST00000409542.1_Missense_Mutation_p.G91D|CHRNA1_ENST00000261007.5_Missense_Mutation_p.G198D	NM_000079.3	NP_000070.1	P02708	ACHA_HUMAN	cholinergic receptor, nicotinic, alpha 1 (muscle)	198					muscle cell homeostasis|neuromuscular junction development|neuromuscular process|neuromuscular synaptic transmission|neuron homeostasis|regulation of action potential in neuron|skeletal muscle contraction|skeletal muscle tissue growth	cell junction|cell surface|neuromuscular junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			breast(3)|central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(5)|lung(15)|ovary(3)|prostate(3)|skin(4)	37						CACGACAGAGCCGTCGTAGGT	0.502000													3	49					0	0	1	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274415	39274415	+	Silent	SNP	C	C	T	rs425487	by1000genomes	TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr17:39274415C>T	ENST00000391413.2	-	1	191	c.153G>A	c.(151-153)agG>agA	p.R51R		NM_033059.3	NP_149048.2	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	51	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].		Missing (in allele KAP4.14).			keratin filament		p.R51R(6)		endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|lung(8)|prostate(5)|skin(1)	33		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGCACTGGGGCCTGCAGCAGC	0.667000													4	44					0	0	1	0	0
REG3G	130120	broad.mit.edu	37	2	79255361	79255361	+	Missense_Mutation	SNP	T	T	A			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr2:79255361T>A	ENST00000272324.5	+	6	671	c.487T>A	c.(487-489)Tgt>Agt	p.C163S	REG3G_ENST00000409471.1_Missense_Mutation_p.C117S|REG3G_ENST00000393897.2_Missense_Mutation_p.C163S	NM_001008387.2	NP_001008388.1	Q6UW15	REG3G_HUMAN	regenerating islet-derived 3 gamma	163	C-type lectin.				acute-phase response	extracellular region	sugar binding			NS(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(3)|lung(27)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	38						AGATTATAACTGTGATGCAAA	0.488000													3	52					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81953130	81953130	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr16:81953130G>A	ENST00000359376.3	+	20	2310	c.2096G>A	c.(2095-2097)gGc>gAc	p.G699D		NM_002661.3	NP_002652.2	P16885	PLCG2_HUMAN	phospholipase C, gamma 2 (phosphatidylinositol-specific)	699	SH2 2.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			NS(1)|breast(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(18)|lung(21)|ovary(1)|prostate(2)|skin(2)|urinary_tract(1)	58						AACCGGGACGGCCGGCACTTT	0.532000													7	76					0	0	1	0	0
HOXD1	3231	broad.mit.edu	37	2	177054653	177054653	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr2:177054653C>T	ENST00000331462.4	+	2	993	c.770C>T	c.(769-771)gCc>gTc	p.A257V		NM_024501.1	NP_078777.1	Q9GZZ0	HXD1_HUMAN	homeobox D1	257						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			kidney(1)|large_intestine(3)|lung(5)|upper_aerodigestive_tract(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.0226)		TTAACTCGAGCCCGGCGCATC	0.502000													8	134					0	0	1	0	0
MAGI1	9223	broad.mit.edu	37	3	65372850	65372851	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr3:65372850_65372851delTC	ENST00000330909.8	-	15	2466_2467	c.2467_2468delGA	c.(2467-2469)afs	p.E823fs	MAGI1_ENST00000402939.2_Intron|MAGI1_ENST00000497477.2_Intron|MAGI1_ENST00000483466.1_Frame_Shift_Del_p.E823fs	NM_015520.1	NP_056335.1	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ domain containing 1	823	PDZ 4.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			breast(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(11)|liver(1)|lung(21)|pancreas(1)|skin(5)	51		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		GGAATTGATTTCTCTCTCTCTC	0.401													8	42	---	---	---	---					
SLC12A7	10723	broad.mit.edu	37	5	1078124	1078125	+	Splice_Site	INS	-	-	GCAG			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr5:1078124_1078125insGCAG	ENST00000264930.5	-	12	1498		c.e12-2			NM_006598.2	NP_006589.2	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride transporter), member 7						potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			breast(1)|endometrium(3)|kidney(2)|large_intestine(3)|lung(14)|ovary(2)|prostate(1)|skin(4)|urinary_tract(2)	32	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	TCCCCGAACCTgcaggcaggcg	0.673													3	3	---	---	---	---					
DNM1P47	0	broad.mit.edu	37	15	102299886	102299887	+	RNA	INS	-	-	G			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr15:102299886_102299887insG	ENST00000561463.1	+	0	7932_7933																											AACCTGTACTCGCGTCGGAACC	0.589													4	5	---	---	---	---					
PRR12	57479	broad.mit.edu	37	19	50100465	50100465	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chr19:50100465delC	ENST00000418929.2	+	4	2885	c.2873delC	c.(2872-2874)gcfs	p.A959fs		NM_020719.1	NP_065770.1	Q9ULL5	PRR12_HUMAN	proline rich 12	138							DNA binding			NS(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(1)|lung(2)|pancreas(1)|prostate(2)	11		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GGTGGAGGGGCCGCGGACGAC	0.672													2	4	---	---	---	---					
WDR44	54521	broad.mit.edu	37	X	117582883	117582885	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-E1-A7YY-01A-11D-A34J-08	TCGA-E1-A7YY-10A-01D-A34M-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2415587-d4b6-4b6b-983f-8c3017ba2f09	ac126c0b-e17f-481c-8331-dc355f8ae993	g.chrX:117582883_117582885delTTC	ENST00000254029.3	+	20	3070_3072	c.2675_2677delTTC	c.(2674-2679)gtt>g	p.VL892del	WDR44_ENST00000371822.5_In_Frame_Del_p.VL803del|WDR44_ENST00000371825.3_In_Frame_Del_p.VL884del	NM_019045.4	NP_061918.3	Q5JSH3	WDR44_HUMAN	WD repeat domain 44	892						cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				breast(4)|endometrium(2)|kidney(1)|large_intestine(4)|lung(16)|ovary(1)|pancreas(1)|prostate(1)|stomach(2)|upper_aerodigestive_tract(1)	33						AACACAGAAGTTCTTCTCTCTGC	0.286													7	61	---	---	---	---