Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count TMX2 51075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 57480129 57480129 + Silent SNP G G A TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a TCGTGTATTCGGTGCCGCGAC 0.627 7 40 THBS1 7057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 39884880 39884880 + Nonsense_Mutation SNP C C T TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a CAATGCCAACCAGGCTGACCA 0.502 18 36 SPINT1 6692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 41146276 41146276 + Missense_Mutation SNP G G A rs138167951 TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a ATGGAAAGGCGCCATCCAGGT 0.592 52 126 ANKRD13B 124930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 27939276 27939276 + Missense_Mutation SNP T T G TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a GCCTCCTGGCTTCCCAGTTAA 0.622 32 86 ABCA9 10350 hgsc.bcm.edu;broad.mit.edu 37 17 66982397 66982397 + Silent SNP C C T TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a TGGGCCACAGCGCATTCTCCT 0.547 8 119 DSG2 1829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 29126141 29126141 + Missense_Mutation SNP G G C TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a ATGGCTTCTAGAAATGTGATA 0.473 66 78 RTTN 25914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 67695981 67695981 + Silent SNP A A C TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a CATTTTGATAAAGACAGTTTC 0.308 5 20 PRODH2 58510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 36293163 36293163 + Silent SNP G G T TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a CCAGAGGAATGCCCAGCTCCC 0.542 13 148 KCNA7 3743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 49573516 49573516 + Missense_Mutation SNP A A G TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a GGAGACAATGACGGGCACTGG 0.567 26 43 PRR12 57479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 50123629 50123629 + Silent SNP C C T TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a ACCTGGGCGTCTGCTCAAAAC 0.567 7 16 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179453926 179453926 + Silent SNP A A G TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a CCGTAACTACATATTTACCCC 0.413 54 67 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179579894 179579894 + Silent SNP G G A TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a ACCAAGAAACGTGAAATGGGG 0.443 62 105 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a ATAAGCATGACGACCTATGAT 0.393 16 51 CCDC54 84692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 107096617 107096617 + Silent SNP C C T rs144553244 TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a ATAGTTATGACGGAAAAATGA 0.363 29 85 CAPN11 11131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 44143857 44143857 + Missense_Mutation SNP G G A TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a CTGGTGAGAGGGCACGCTTAC 0.557 8 28 MAGEB4 4115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 30260295 30260295 + Missense_Mutation SNP C C T TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a CCGTGAGAAACGCCAGCGGAC 0.567 16 52 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76939697 76939697 + Nonsense_Mutation SNP C C A TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a TTAATCATCTCTTTGGGCACA 0.353 39 71 RGAG1 57529 hgsc.bcm.edu;broad.mit.edu 37 X 109694050 109694050 + Missense_Mutation SNP C C G TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a GATGACATCTCCAGTCTTTGA 0.517 26 316 MCF2 4168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 138711938 138711938 + Missense_Mutation SNP T T A TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a TCTCAGCCAGTTCAGTTCCAA 0.398 82 147 CD99L2 83692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 149938823 149938823 + Silent SNP G G A rs147156476 byFrequency TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a CTCCCTTCACGTAGTCTGCGT 0.537 20 39 HMGB3 3149 hgsc.bcm.edu;broad.mit.edu 37 X 150156360 150156360 + Silent SNP G G A TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a aggaagaagaggaggaggagg 0.443 5 62 KIAA1324 57535 broad.mit.edu;ucsc.edu 37 1 109741239 109741239 + Missense_Mutation SNP C C G TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a AGATCAACCACCATCCGCGTC 0.532 3 17 CCAR1 55749 broad.mit.edu;hgsc.bcm.edu 37 10 70513778 70513779 + Frame_Shift_Ins INS - - A TCGA-HT-A616-01A-11D-A29Q-08 TCGA-HT-A616-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5e41fcb0-82bf-4e09-99ba-ff6f56d6f18c eb5310fc-1426-4b59-b41b-47302c259a6a AGAGTCCTTAGAAAAAAATATG 0.381 32 69