Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count LDB1 8861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 103871263 103871263 + Missense_Mutation SNP G G A TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 CTCCTTCGGCGAGTACAGCTT 0.547 43 66 PLAC1L 219990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 59812148 59812148 + Missense_Mutation SNP T T C TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TCCTAGGTAGTTTCTGAGGAA 0.398 28 139 TMEM109 79073 hgsc.bcm.edu;broad.mit.edu 37 11 60687346 60687346 + Missense_Mutation SNP G G C TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 AGGTCGATCTGTGCGAGGGAC 0.542 15 266 ZW10 9183 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 113628513 113628513 + Missense_Mutation SNP T T C TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TGGCTTTCTATCACAGCATGA 0.378 16 148 STAB2 55576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 104049284 104049284 + Silent SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 GTGGACCATACACCATTTTTG 0.423 60 56 TDG 6996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 104374683 104374683 + Missense_Mutation SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TGGCATAAACCCGGGACTAAT 0.363 28 246 HS3ST4 9951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 26147367 26147367 + Missense_Mutation SNP A A T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TATTTCAACAAAACCAAGGGG 0.517 21 86 APOBR 55911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 28507468 28507468 + Missense_Mutation SNP G G A TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 GCCTCAGGAGGGGACGAGGCC 0.657 16 13 CDH19 28513 hgsc.bcm.edu;broad.mit.edu 37 18 64172539 64172539 + Splice_Site SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 AAAAATAAACCCTGATGAAGA 0.303 10 173 DOHH 83475 hgsc.bcm.edu;broad.mit.edu 37 19 3492382 3492382 + Missense_Mutation SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 CCCCACGTCACGCTCCTCAGC 0.746 3 3 C3 718 hgsc.bcm.edu;broad.mit.edu 37 19 6697496 6697496 + Silent SNP G G A rs140780068 TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 GGATGGTTACGGTCTGCTGGT 0.587 9 128 PLD3 23646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 40883897 40883897 + Silent SNP C C G TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 CTCTAGGAACCTCCAACTGGT 0.647 23 147 HCN3 57657 hgsc.bcm.edu;broad.mit.edu 37 1 155257756 155257756 + Silent SNP G G A TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TGGTACATGCGCCCCTTCAGG 0.627 9 114 OR1C1 26188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 247920937 247920937 + Missense_Mutation SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 CTGAAATAGACGGCGATGGCT 0.512 54 45 MICALL1 85377 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 38323471 38323471 + Missense_Mutation SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 CACACCATCGCCAGCGCTCAG 0.677 44 48 CLIP4 79745 hgsc.bcm.edu;broad.mit.edu 37 2 29356592 29356592 + Missense_Mutation SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TTTGCGGAGTCGCTGGACAAA 0.368 8 127 CAPN13 92291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 30966407 30966407 + Silent SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TGTTTCTGAACGAGGAAAAAA 0.473 104 138 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 ATAAGCATGACGACCTATGAT 0.393 50 103 GRM7 2917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 7188209 7188209 + Missense_Mutation SNP G G A TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TTCTTCTCTCGCGTGGTGCCA 0.522 39 191 KLHL18 23276 hgsc.bcm.edu;broad.mit.edu 37 3 47361235 47361235 + Silent SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TGATGGAGTGCAAGCAGGATG 0.493 16 296 GPR116 221395 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 46826878 46826878 + Missense_Mutation SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 CATCACTAAGCTCTCTGCAAA 0.448 49 215 MCM9 254394 hgsc.bcm.edu;broad.mit.edu 37 6 119245149 119245149 + Missense_Mutation SNP A A G TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 ACATGCTTGCATTTGTTACAC 0.458 27 369 SCRN1 9805 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 29963705 29963705 + Silent SNP G G A TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 GCTCCAGCATGGTGCTCCTCA 0.557 18 158 RNF133 168433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 122338205 122338205 + Silent SNP G G A TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 AGCAAATTACGCAGCTATCCC 0.398 138 393 CEP41 95681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 130038826 130038826 + Missense_Mutation SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 CTGAGCGCTTCGGGCACCAGG 0.577 46 490 FAM154A 158297 hgsc.bcm.edu;broad.mit.edu 37 9 18928507 18928507 + Missense_Mutation SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 AAGTGCAGGTCGGCAGGACTG 0.562 10 154 SPATA31E1 286234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 90501762 90501762 + Missense_Mutation SNP G G A TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 CCTGTGCGTCGCTCCTGGCTC 0.577 27 203 ABCA2 20 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139912486 139912486 + Missense_Mutation SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TCCACCACATCGTGCCCCACA 0.662 11 50 NDOR1 27158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 140110623 140110623 + Silent SNP A A G TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 GCCAGGGTGCATACTTCTACC 0.642 20 141 LCLAT1 253558 broad.mit.edu;ucsc.edu 37 2 30863465 30863465 + Missense_Mutation SNP A A G TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 GCCACATTTAAATTCAAAGAA 0.343 19 157 PDE1A 5136 broad.mit.edu;ucsc.edu 37 2 183095781 183095781 + Nonsense_Mutation SNP A A C TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TAAACAGTTCATAAATCATAA 0.323 39 255 MIB2 142678 broad.mit.edu;ucsc.edu 37 1 1563188 1563188 + Silent SNP C C T TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 TGTGTGAGCGCGGCTGTGACG 0.692 8 12 CELSR1 9620 broad.mit.edu;ucsc.edu 37 22 46929761 46929761 + Missense_Mutation SNP C C T rs145654024 TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 ATCTGGAAGTCGGGCAGCACA 0.607 35 359 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7577101 7577101 + Frame_Shift_Del DEL C C - TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 GCCGGTCTCTCCCAGGACAGG 0.547 90 19 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76907649 76907650 + Frame_Shift_Del DEL TC TC - TCGA-E1-5302-01A-01D-1468-08 TCGA-E1-5302-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b6552b4f-bc4b-4bad-91d7-582582c5f2f5 652a742e-454b-4aeb-81d1-4fc5fb962018 CAATACGTTTTCGTCTCTCTTC 0.386 180 59