Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PSMC3 5702 hgsc.bcm.edu;broad.mit.edu 37 11 47444498 47444498 + Missense_Mutation SNP C C T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CCTTGTGGTTCATTGGCAAGA 0.592 19 238 PCNXL3 399909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 65393163 65393163 + Missense_Mutation SNP T T G TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d TGTGTGGTGATCGCCGTGCTC 0.627 13 22 GPR83 10888 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 94113592 94113592 + Missense_Mutation SNP C C A TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CATGGCAAACCAGTGGAAGGC 0.517 73 168 KRT71 112802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 52946764 52946764 + Missense_Mutation SNP C C T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d GCTCCCTGCCCGGAAGGAGGA 0.652 19 167 FGD6 55785 hgsc.bcm.edu;broad.mit.edu 37 12 95604123 95604123 + Missense_Mutation SNP G G A TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d TTGGGAGTTGGAAATTTTGGG 0.413 12 151 PDE8A 5151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 85681058 85681058 + Missense_Mutation SNP A A G TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d TTAATGCAGCATCTTGACAAC 0.463 10 44 OR1A1 8383 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 3119139 3119139 + Silent SNP G G A rs113780617 TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d TCTTCTCATCGGTAACCATCC 0.483 20 197 OR4D2 124538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 56247641 56247641 + Missense_Mutation SNP G G A rs149114670 TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d GCTGGATGTCGTCTGGTTCTT 0.527 18 74 SMARCA4 6597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11144121 11144121 + Missense_Mutation SNP C C G TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CCGGCATGTTCGACCAGAAGT 0.637 26 73 ZNF91 7644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 23543197 23543197 + Missense_Mutation SNP C C T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d TGATTAAAAGCTTTGCCACAT 0.358 6 40 GPBP1L1 60313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 46120875 46120875 + Silent SNP T T C TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CTGCAGTTCGTAGGGGACCAT 0.453 14 59 SOAT1 6646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 179320474 179320474 + Silent SNP T T C TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d TCATTGTCAATGATAGTCGGA 0.408 21 208 EDEM2 55741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 33722668 33722668 + Missense_Mutation SNP G G A TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d AATCCCTGCCGTACAGGTGAC 0.542 10 58 APOBEC3B 9582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 39387537 39387537 + Silent SNP C C T rs144471703 TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d TGCGCATCTTCGCTGCCCGCA 0.572 36 204 SMYD1 150572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 88393054 88393054 + Silent SNP C C G TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CAGTGAAATCCATGTTTCATA 0.493 18 83 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d ATAAGCATGACGACCTATGAT 0.393 48 50 CPS1 1373 hgsc.bcm.edu;ucsc.edu 37 2 211515094 211515094 + Missense_Mutation SNP G G A TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CAGTGGGTCTGCTATGAATGT 0.408 8 73 RUFY4 285180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 218954072 218954072 + Missense_Mutation SNP C C T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d ATTTTCTCGGCGGTATCCATG 0.602 6 35 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178936082 178936082 + Missense_Mutation SNP G G A rs121913273 TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d TCCTCTCTCTGAAATCACTGA 0.333 7 45 DAB2 1601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 39381673 39381673 + Missense_Mutation SNP C C T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d GGTTCTGAGACGGGAGGAGCA 0.542 23 106 CPEB4 80315 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 173317440 173317440 + Missense_Mutation SNP A A T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CACCACCCACATCACCCTCAT 0.537 18 107 NKAPL 222698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 28228259 28228259 + Silent SNP A A G TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d GAGCTCTTGCATCCTTTAACC 0.443 47 59 PPP1R3A 5506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 113517991 113517991 + Silent SNP A A G TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CAGGAAGACTAGTAGAAGCAG 0.368 111 146 MYOM2 9172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 2021511 2021511 + Missense_Mutation SNP G G T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d GGACGACGAGGGCCTGTACAC 0.602 13 46 PRDM14 63978 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 70978498 70978498 + Silent SNP C C T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d GCTGCTTCCCCGGCTCTGTGA 0.537 9 88 VPS13B 157680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 100589785 100589785 + Missense_Mutation SNP T T C TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d TTCCTAAGTGTGGCTCAAGTT 0.388 11 92 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu 37 9 139392000 139392000 + Missense_Mutation SNP G G A TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CAGAAACAGGGGTGTCTCCTC 0.677 3 20 OTUD5 55593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 48791845 48791845 + Silent SNP G G A TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d GAATGGGTTCGTCCTCGTTTT 0.507 13 130 ESX1 80712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 103499230 103499230 + Missense_Mutation SNP C C A TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CTCCCCTTGCCATCAGCGAGG 0.602 25 239 SASH3 54440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 128914084 128914084 + Missense_Mutation SNP G G A rs140091268 TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d ATGCTGCGCCGCAAGCCCTCC 0.577 12 31 HS3ST6 64711 broad.mit.edu;ucsc.edu 37 16 1962181 1962181 + Missense_Mutation SNP C C T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d GTGATCTGCCCATCCAGGGTT 0.687 6 12 KRTCAP3 200634 broad.mit.edu;ucsc.edu 37 2 27666916 27666916 + Nonsense_Mutation SNP G G A TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d CAGAGAAGTTGGGTTTAGGAC 0.483 3 21 ITPRIPL1 150771 broad.mit.edu;ucsc.edu 37 2 96993753 96993753 + Missense_Mutation SNP C C T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d ACGGCTGCCCCTCACGGACTG 0.567 17 87 PLCD3 113026 broad.mit.edu;ucsc.edu 37 17 43194022 43194022 + Missense_Mutation SNP G G T TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d AGCTCCTCGGGATTTGGGGAG 0.692 31 36 MRPL15 29088 broad.mit.edu;hgsc.bcm.edu 37 8 55049886 55049889 + Frame_Shift_Del DEL GGTC GGTC - rs144260791 TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d TATTGATTTGGGTCGTGTTGATCC 0.426 28 60 TCF12 6938 broad.mit.edu;hgsc.bcm.edu 37 15 57555366 57555369 + Frame_Shift_Del DEL AAAG AAAG - TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d GACTGAAAACAAAGAAAAGGATGA 0.382 22 28 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42791372 42791373 + Frame_Shift_Del DEL AG AG - TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d ACAGTGAGACAGAGAGTGACCA 0.663 19 8 NOTCH1 4851 ucsc.edu 37 9 139412597 139412597 + Missense_Mutation SNP C C G TCGA-DU-7018-01A-11D-2024-08 TCGA-DU-7018-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 29c55a80-cd55-4297-b433-00d0e2b1e08d 453998d9-d9f9-479d-86c0-d889a58b836d ACCCAGCGAGCACTCATCCAC 0.672 1 11