Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MASTL 84930 hgsc.bcm.edu;broad.mit.edu 37 10 27459597 27459597 + Missense_Mutation SNP A A G TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 ATGAACTCTGATTCATCTTTT 0.323 4 70 TBATA 219793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 72541755 72541755 + Missense_Mutation SNP G G A TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 CTTGGCTTGCGCCCTGACTTC 0.587 40 55 PHRF1 57661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 608555 608555 + Silent SNP G G A TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 CGAGGTCAGCGTCACCATCAG 0.662 8 21 OR52D1 390066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5510502 5510502 + Missense_Mutation SNP G G C rs74379370 by1000genomes TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 GGCATTGCCCGACTGGCCTGT 0.522 78 88 SLC17A6 57084 hgsc.bcm.edu;broad.mit.edu 37 11 22363146 22363146 + Silent SNP C C T TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 TAGAGGTGCCCGAGAGGAAGG 0.642 4 38 CHST1 8534 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 45671624 45671624 + Missense_Mutation SNP A A G TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 AGGCCGGTGGACACGGAGTTG 0.622 8 63 OR5B21 219968 hgsc.bcm.edu;broad.mit.edu 37 11 58275443 58275443 + Missense_Mutation SNP T T C TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 GAGTGGATGATCACCATCATT 0.478 7 72 CCDC153 283152 hgsc.bcm.edu;broad.mit.edu 37 11 119063944 119063944 + Missense_Mutation SNP C C T TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 ATGGCACTGGCGACTCATCTC 0.592 5 83 GNPTAB 79158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 102142925 102142925 + Missense_Mutation SNP A A G TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 CAATGTTGCTAGTACACAATG 0.338 38 108 RBM23 55147 hgsc.bcm.edu;ucsc.edu 37 14 23371258 23371258 + Missense_Mutation SNP C C T TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 GCAGCCTGGgcggcggcggca 0.557 36 62 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578265 7578265 + Missense_Mutation SNP A A G TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 TTCCACTCGGATAAGATGCTG 0.552 34 11 MYH4 4622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10351193 10351193 + Missense_Mutation SNP G G T TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 CTGGCGGTTGGCATGGTTCAG 0.453 80 132 ALDH3A1 218 hgsc.bcm.edu;broad.mit.edu 37 17 19641635 19641635 + Splice_Site SNP C C T TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 CCCCCTCTCACCTTGGCCGGG 0.632 4 62 C3 718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 6707865 6707865 + Missense_Mutation SNP C C T TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 AGCCCTGCGTCGGAGAAGACA 0.682 21 44 PDCD2L 84306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 34900075 34900075 + Missense_Mutation SNP A A G TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 GAAACAGGGAAACAGCCTTGC 0.522 30 58 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 186105910 186105910 + Missense_Mutation SNP C C T TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 TACATGGTCCCGTCAAGGGCA 0.428 66 55 ADNP 23394 hgsc.bcm.edu;broad.mit.edu 37 20 49508437 49508437 + Silent SNP A A G TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 TCAAATGAATAGTTTCGTATT 0.423 13 169 ORC4 5000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 148716409 148716409 + Silent SNP G G A TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 CTATTTCCATGAGTTCTTTCA 0.264 17 22 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 ATAAGCATGACGACCTATGAT 0.393 28 44 B3GNT5 84002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 182987919 182987919 + Nonsense_Mutation SNP G G A TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 GAAGGACGTGGGGCAATGAAA 0.428 28 67 PRKAA1 5562 hgsc.bcm.edu;broad.mit.edu 37 5 40765101 40765101 + Missense_Mutation SNP G G A TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 TGGGCTTGTCGCCAAATAGAA 0.438 6 60 GRIA1 2890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 153026583 153026583 + Missense_Mutation SNP G G A rs138238382 TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 GGCCCTCCACGTCTGCTTCAT 0.502 14 113 COL12A1 1303 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 75834890 75834890 + Missense_Mutation SNP T T C TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 AGAATCATATTGAGCATAAAC 0.413 22 30 SYBU 55638 hgsc.bcm.edu;broad.mit.edu 37 8 110655043 110655043 + Missense_Mutation SNP G G A TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 CTCAGAGAAAGGAGACTCAGA 0.552 6 92 SYBU 55638 hgsc.bcm.edu;broad.mit.edu 37 8 110655044 110655044 + Missense_Mutation SNP G G A TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 TCAGAGAAAGGAGACTCAGAG 0.552 6 93 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu 37 8 113277704 113277704 + Silent SNP A A G TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 TTCTGGAGCCATTCAATTCCA 0.403 9 117 TG 7038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 133961128 133961128 + Missense_Mutation SNP A A T TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 TCCTGGTGTGACATATGACCA 0.468 25 175 WWC3 55841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 10085416 10085416 + Missense_Mutation SNP G G T TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 TCCACAAGCAGAGGCGGTCCC 0.672 13 34 EDA 1896 hgsc.bcm.edu;broad.mit.edu 37 X 68836453 68836453 + Missense_Mutation SNP C C T rs41539891 TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 CCCTGACAGCCCCATCACCAG 0.677 26 9 ACBD3 64746 broad.mit.edu;ucsc.edu 37 1 226349374 226349374 + Nonsense_Mutation SNP G G A TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 cgccgccttcgctcctcttcc 0.458 14 11 ZAP70 7535 broad.mit.edu;ucsc.edu 37 2 98354504 98354504 + Missense_Mutation SNP G G A TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 CAGGGCAAGCGGATGGAGTGC 0.607 3 4 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939957 76939957 + Frame_Shift_Del DEL T T - TCGA-DU-7015-01A-11D-2024-08 TCGA-DU-7015-10B-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0a50aaa7-8539-4a6a-83a3-92dc92614388 9eb0f222-3de6-4ad6-b286-4c12998c1536 AATGTAGCAATACCATTGGTT 0.398 121 57