Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NOS1 4842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 117669890 117669890 + Silent SNP G G A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b CCTGGAAGATGGTGCAGGGCG 0.592 19 21 NPAS3 64067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 34263252 34263252 + Splice_Site SNP T T G TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b CCTTCTTAGGTATATTTTCTA 0.333 26 44 JAG2 3714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 105615619 105615619 + Silent SNP G G A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b AGCGAGCGCCGTTCCGGCAGG 0.662 48 85 ENKD1 84080 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67700039 67700039 + Missense_Mutation SNP C C T TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b CCCGACGCCGCGCTGGCCGCG 0.662 8 52 FKBP8 23770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 18650228 18650228 + Silent SNP C C T TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b TGACCATGGCCGTCTCCCCCA 0.637 51 50 IRF2BP1 26145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 46387378 46387378 + Missense_Mutation SNP C C A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GACCAGCGGGCACTTGTCTCC 0.642 15 4 PHACTR3 116154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 58381107 58381107 + Missense_Mutation SNP C C T TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b AACACTGCCACGGAAATGCAA 0.547 69 287 KRTAP13-1 140258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 31768834 31768834 + Missense_Mutation SNP G G A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GGGCTATGGCGTTGGATTCTG 0.542 17 17 PWP2 5822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 45540355 45540355 + Missense_Mutation SNP G G A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GGACGGGACCGTGCGAGCCTT 0.597 81 101 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b ATAAGCATGACGACCTATGAT 0.393 26 62 TXK 7294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 48114404 48114404 + Silent SNP A A G TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b TTAAGGCTAAATTACAGGGTT 0.468 27 148 NPY1R 4886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 164247119 164247119 + Silent SNP G G A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b CAAAGCACACGTATTTGTCTT 0.408 35 39 PLEKHG4B 153478 hgsc.bcm.edu;broad.mit.edu 37 5 143249 143249 + Missense_Mutation SNP G G A rs115149634 byFrequency TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GTGCCTGCCCGGCAGCCACAC 0.647 22 74 ZDHHC11 79844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 814876 814876 + Splice_Site SNP C C G rs138424733 TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b ACGAACTTACCCAAGTGTAGA 0.378 26 34 DNAH8 1769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 38690599 38690599 + Missense_Mutation SNP C C T TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GAGAAGGATGCTGAAGATGGC 0.532 11 15 THEMIS 387357 hgsc.bcm.edu;broad.mit.edu 37 6 128135074 128135074 + Nonsense_Mutation SNP G G A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b ATATCTTTTCGAACTAAAAAG 0.333 40 55 ZNF782 158431 hgsc.bcm.edu;broad.mit.edu 37 9 99581580 99581580 + Missense_Mutation SNP G G C TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GAAATTGTAAGATTTTCCTTT 0.333 8 92 FRMPD4 9758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 12701668 12701668 + Missense_Mutation SNP C C T TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b TGTCAAAGTACGCTTCTCTGA 0.423 28 3 CEP104 9731 broad.mit.edu;ucsc.edu 37 1 3768869 3768869 + Missense_Mutation SNP G G A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b CTAGGTGACCGCCACCCACTG 0.622 3 21 NF1 4763 broad.mit.edu;ucsc.edu 37 17 29670155 29670155 + Splice_Site SNP T T A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b TTTTAAAAGGTAAAAAAGCCT 0.318 5 36 ZNRD1-AS1 80862 broad.mit.edu;ucsc.edu 37 6 29977359 29977359 + RNA SNP G G A rs3831361 by1000genomes TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b ATTTGTTCATGCCTTCCCTTT 0.453 7 47 TRBV7-6 28592 broad.mit.edu;ucsc.edu 37 7 142139349 142139349 + RNA SNP G G A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GAGTGGAGACGGATCCCTCAG 0.567 26 96 ZNRD1-AS1 80862 broad.mit.edu;ucsc.edu 37 6 29977358 29977358 + RNA SNP T T C rs146982767 by1000genomes TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GATTTGTTCATGCCTTCCCTT 0.448 7 47 NPTX1 4884 broad.mit.edu;ucsc.edu 37 17 78444660 78444660 + Missense_Mutation SNP C C T TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GTGGCCCCTCCGTAGATCTCG 0.662 7 51 NT5C 30833 broad.mit.edu;ucsc.edu 37 17 73126675 73126675 + Missense_Mutation SNP C C A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GGGGGCAGGACCAGGTGCCGA 0.607 30 47 SMC4 10051 broad.mit.edu;ucsc.edu 37 3 160137299 160137299 + Missense_Mutation SNP T T A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b AGAAAAAAAATCTGGCAGGAT 0.343 35 57 FUBP1 8880 broad.mit.edu;hgsc.bcm.edu 37 1 78433848 78433851 + Splice_Site DEL CAGT CAGT - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GGAATACTTACAGTCATTTTGAGG 0.319 20 11 HGD 3081 broad.mit.edu;hgsc.bcm.edu 37 3 120357338 120357338 + Frame_Shift_Del DEL C C - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b TTATCAGCAACCCCCCATCGA 0.483 23 92 WDFY3 23001 broad.mit.edu;hgsc.bcm.edu 37 4 85731329 85731331 + In_Frame_Del DEL GAA GAA - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b AACACAGTGTGAAGAAGTTCAAA 0.448 28 51 MAN2A1 4124 broad.mit.edu;hgsc.bcm.edu 37 5 109049430 109049433 + Frame_Shift_Del DEL CTGT CTGT - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b ACACTGCAGACTGTCTGTTTGCTT 0.407 38 133 HDAC2 3066 broad.mit.edu;hgsc.bcm.edu 37 6 114277842 114277844 + In_Frame_Del DEL TCT TCT - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b CACTGGACAATCTTCTCCAACAT 0.35 15 16 NOTCH1 4851 broad.mit.edu;hgsc.bcm.edu 37 9 139391997 139391998 + Frame_Shift_Del DEL AG AG - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b GGCCAGAAACAGGGGTGTCTCC 0.683 17 14 NOTCH1 4851 broad.mit.edu;hgsc.bcm.edu 37 9 139395163 139395166 + Frame_Shift_Del DEL GTCT GTCT - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b CGCCCGTGCGGTCTGTCTGGTTGT 0.686 41 136 PHLPP2 23035 broad.mit.edu;hgsc.bcm.edu 37 16 71692597 71692599 + In_Frame_Del DEL TGT TGT - rs145938775 TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b AAAATGCTGATGTTGTTGGAGTG 0.458 25 133 PLIN4 729359 broad.mit.edu;hgsc.bcm.edu 37 19 4510914 4510916 + In_Frame_Del DEL TGG TGG - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b AGCACTGTCTTGGTGGTGTCCAG 0.626 22 28 NF1 4763 broad.mit.edu 37 17 29546036 29546037 + Frame_Shift_Del DEL AG AG - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b CCAAGAAAACAGGGGCCCGAAA 0.426 7 13 PIK3R1 5295 broad.mit.edu 37 5 67591105 67591107 + In_Frame_Del DEL TAA TAA - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b TGAACAGCATTAAACCAGACCTT 0.369 16 108 NF1 4763 broad.mit.edu 37 17 29652976 29652979 + Frame_Shift_Del DEL TCTC TCTC - TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b AAACAGACTTTCTCTCTAAGTGGT 0.422 11 168 NF1 4763 broad.mit.edu 37 17 29553697 29553697 + Nonsense_Mutation SNP C C A TCGA-DU-6394-01A-11D-1705-08 TCGA-DU-6394-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 611b0bd5-fb3a-4c10-999c-e4b3f6980d0b d7371b5d-ee62-450e-bc22-082b1de3911b AATATGATGTCAACAGGTAAA 0.403 7 162