Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
PLXNA3	0	genome.wustl.edu	36	X	153344975	153344975	+	Silent	SNP	C	C	T			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	X	153344975	153344975	C	T	SNP	PLXNA3	NM_017514.3	human	genbank	54_36p	+1	validated	silent	c.1365	p.P455	0.183	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,superfamily_Rho_GAP,HMMPfam_Plexin_cytopl,superfamily_Ig_E-set,superfamily_Plexin-like_fold	-	no_errors	93	3	3.12	23	92	80.00	NA	NA	NA
ZNF687	0	genome.wustl.edu	36	1	149526479	149526479	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	1	149526479	149526479	C	G	SNP	ZNF687	NM_020832.1	human	genbank	54_36p	+1	provisional	missense	c.1088	p.A363G	0.478	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	235	10	4.08	231	175	43.10	31	35	53.03
DDR2	0	genome.wustl.edu	36	1	160992176	160992176	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	1	160992176	160992176	G	A	SNP	DDR2	NM_001014796.1	human	genbank	54_36p	+1	reviewed	missense	c.664	p.G222R	0.972	NULL	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,PatternScan_PROTEIN_KINASE_TYR,superfamily_Gal_bind_like,superfamily_Kinase_like	-	no_errors	283	5	1.74	198	112	36.13	NA	NA	NA
CAPG	0	genome.wustl.edu	36	2	85482483	85482483	+	Silent	SNP	C	C	G			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	2	85482483	85482483	C	G	SNP	CAPG	NM_001747.2	human	genbank	54_36p	-1	reviewed	silent	c.132	p.S44	0.472	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	-	no_errors	246	13	5.02	171	114	40.00	3	12	80.00
SULT1C2	0	genome.wustl.edu	36	2	108283798	108283798	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	2	108283798	108283798	C	T	SNP	SULT1C2	NM_176825.3	human	genbank	54_36p	+1	reviewed	missense	c.383	p.P128L	0.728	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	334	13	3.74	290	178	38.03	3	4	57.14
PTPRN	0	genome.wustl.edu	36	2	219874632	219874632	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	2	219874632	219874632	G	A	SNP	PTPRN	NM_002846.2	human	genbank	54_36p	-1	reviewed	missense	c.1048	p.R350C	0.966	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors	274	13	4.53	355	258	42.09	NA	NA	NA
TRPC1	0	genome.wustl.edu	36	3	143986570	143986570	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	3	143986570	143986570	T	C	SNP	TRPC1	NM_003304.4	human	genbank	54_36p	+1	validated	missense	c.1193	p.I398T	1.000	NULL	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2	-	no_errors	91	0	0.00	80	57	41.61	NA	NA	NA
TET2	0	genome.wustl.edu	36	4	106413341	106413341	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	4	106413341	106413341	C	T	SNP	TET2	ENST00000265149	human	ensembl	54_36p	+1	known	nonsense	c.760	p.R254*	0.839	NULL	NULL	-	no_start_codon	191	6	3.03	249	158	38.82	38	25	39.68
TRAM1L1	0	genome.wustl.edu	36	4	118225696	118225696	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	4	118225696	118225696	A	T	SNP	TRAM1L1	NM_152402.2	human	genbank	54_36p	-1	validated	missense	c.302	p.V101E	1.000	HMMPfam_TRAM1	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC,HMMPfam_TRAM1	-	no_errors	113	2	1.74	187	136	42.11	NA	NA	NA
MIER3	0	genome.wustl.edu	36	5	56260413	56260413	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	5	56260413	56260413	G	C	SNP	MIER3	NM_152622.3	human	genbank	54_36p	-1	validated	missense	c.859	p.R287G	1.000	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding	HMMPfam_ELM2,HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding,PatternScan_EF_HAND_1	-	no_errors	258	7	2.64	182	87	32.34	13	12	48.00
MAP1B	0	genome.wustl.edu	36	5	71527714	71527714	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	5	71527714	71527714	T	C	SNP	MAP1B	NM_005909.3	human	genbank	54_36p	+1	validated	missense	c.2776	p.F926L	1.000	NULL	HMMPfam_MAP1B_neuraxin,PatternScan_MAP1B_NEURAXIN	-	no_errors	464	17	3.52	471	349	42.41	NA	NA	NA
PCDHA4	0	genome.wustl.edu	36	5	140168251	140168251	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	5	140168251	140168251	C	T	SNP	PCDHA4	NM_018907.2	human	genbank	54_36p	+1	reviewed	missense	c.1295	p.S432L	0.781	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors	44	0	0.00	127	101	44.10	NA	NA	NA
GRM8	0	genome.wustl.edu	36	7	125960487	125960487	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	7	125960487	125960487	G	A	SNP	GRM8	NM_000845.2	human	genbank	54_36p	-1	reviewed	missense	c.2185	p.R729W	0.995	HMMPfam_7tm_3	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I	-	no_errors	378	3	0.79	187	129	40.69	NA	NA	NA
ZNF485	0	genome.wustl.edu	36	10	43432541	43432541	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	10	43432541	43432541	C	G	SNP	ZNF485	NM_145312.3	human	genbank	54_36p	+1	validated	missense	c.927	p.H309Q	0.995	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMSmart_KRAB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors	165	0	0.00	143	100	41.15	6	9	60.00
B4GALNT1	0	genome.wustl.edu	36	12	56312117	56312117	+	Silent	SNP	G	G	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	12	56312117	56312117	G	A	SNP	B4GALNT1	NM_001478.3	human	genbank	54_36p	-1	reviewed	silent	c.66	p.L22	0.988	NULL	HMMPfam_Glycos_transf_2,superfamily_SSF53448	-	no_errors	216	4	1.82	118	84	41.58	NA	NA	NA
USP44	0	genome.wustl.edu	36	12	94451003	94451003	+	Silent	SNP	A	A	G			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	12	94451003	94451003	A	G	SNP	USP44	NM_001042403.1	human	genbank	54_36p	-1	validated	silent	c.1161	p.T387	0.997	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,HMMPfam_zf-UBP,HMMSmart_SM00290,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors	172	5	2.82	258	158	37.98	12	9	42.86
CACNA1G	0	genome.wustl.edu	36	17	46022948	46022948	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	17	46022948	46022948	T	C	SNP	CACNA1G	NM_018896.3	human	genbank	54_36p	+1	validated	missense	c.2419	p.Y807H	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors	383	1	0.26	425	297	41.02	NA	NA	NA
ATP9B	0	genome.wustl.edu	36	18	75114470	75114470	+	Silent	SNP	T	T	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	18	75114470	75114470	T	A	SNP	ATP9B	NM_198531.3	human	genbank	54_36p	+1	validated	silent	c.1209	p.G403	0.999	HMMPfam_E1-E2_ATPase	HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	75	3	3.85	168	118	41.11	21	21	50.00
NDUFA13	0	genome.wustl.edu	36	19	19487967	19487967	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	19	19487967	19487967	T	C	SNP	NDUFA13	NM_015965.5	human	genbank	54_36p	+1	validated	missense	c.169	p.S57P	0.000	NULL	HMMPfam_GRIM-19	-	no_errors	250	5	1.96	186	138	42.59	2	3	60.00
FLT3	0	genome.wustl.edu	36	13	27506262	27506263	+	In_Frame_Ins	INS	-	-	TCATATTCTCTGAAATCAACGTAGAAGTACTCA			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	-	-	-	TCATATTCTCTGAAATCAACGTAGAAGTACTCA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	852e4100-27a4-4253-b1ae-089fe0fec4c3	3ecb6bf3-b4c8-43ad-9928-411550ebc27c	13	27506262	27506263	-	TCATATTCTCTGAAATCAACGTAGAAGTACTCA	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1793	p.598in_frame_insDEYFYVDFREY	0.821	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA