Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
GSTM3	0	genome.wustl.edu	36	1	110082336	110082336	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2995-03A-01D-0739-09	TCGA-AB-2995-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10a026ec-f343-4b63-b67e-59938e0cffac	ce73c6c8-40ab-4a3c-acd6-c22444da3567	1	110082336	110082336	C	A	SNP	GSTM3	NM_000849.4	human	genbank	54_36p	-1	reviewed	missense	c.272	p.C91F	1.000	superfamily_Glutathione S-transferase (GST) C-terminal domain	HMMPfam_GST_N,HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain,superfamily_Thioredoxin-like	-	no_errors	324	0	0.00	917	207	18.40	16	26	61.90
DDX41	0	genome.wustl.edu	36	5	176871976	176871976	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2995-03A-01D-0739-09	TCGA-AB-2995-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10a026ec-f343-4b63-b67e-59938e0cffac	ce73c6c8-40ab-4a3c-acd6-c22444da3567	5	176871976	176871976	C	T	SNP	DDX41	NM_016222.2	human	genbank	54_36p	-1	reviewed	missense	c.1574	p.R525H	1.000	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_zf-CCHC,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	94	0	0.00	222	61	21.48	77	48	38.40
ZNF37A	0	genome.wustl.edu	36	10	38446452	38446452	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2995-03A-01D-0739-09	TCGA-AB-2995-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10a026ec-f343-4b63-b67e-59938e0cffac	ce73c6c8-40ab-4a3c-acd6-c22444da3567	10	38446452	38446452	A	G	SNP	ZNF37A	NM_001007094.1	human	genbank	54_36p	+1	validated	missense	c.367	p.N123D	0.808	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	135	0	0.00	536	156	22.48	8	8	50.00
KCNH5	0	genome.wustl.edu	36	14	62517600	62517600	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2995-03A-01D-0739-09	TCGA-AB-2995-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10a026ec-f343-4b63-b67e-59938e0cffac	ce73c6c8-40ab-4a3c-acd6-c22444da3567	14	62517600	62517600	C	T	SNP	KCNH5	NM_139318.3	human	genbank	54_36p	-1	reviewed	missense	c.685	p.A229T	1.000	superfamily_Voltage-gated potassium channels	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,HMMPfam_PAS,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors	217	0	0.00	1499	443	22.66	NA	NA	NA
DNAH9	0	genome.wustl.edu	36	17	11513510	11513510	+	Silent	SNP	C	C	T			TCGA-AB-2995-03A-01D-0739-09	TCGA-AB-2995-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10a026ec-f343-4b63-b67e-59938e0cffac	ce73c6c8-40ab-4a3c-acd6-c22444da3567	17	11513510	11513510	C	T	SNP	DNAH9	NM_001372.3	human	genbank	54_36p	+1	reviewed	silent	c.3027	p.T1009	0.907	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	314	0	0.00	1210	325	21.10	NA	NA	NA
MYLK2	0	genome.wustl.edu	36	20	29882538	29882538	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2995-03A-01D-0739-09	TCGA-AB-2995-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10a026ec-f343-4b63-b67e-59938e0cffac	ce73c6c8-40ab-4a3c-acd6-c22444da3567	20	29882538	29882538	G	T	SNP	MYLK2	NM_033118.3	human	genbank	54_36p	+1	reviewed	missense	c.1357	p.V453L	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors	226	0	0.00	511	107	17.29	NA	NA	NA
LOC646513	0	genome.wustl.edu	36	22	29161774	29161774	+	Silent	SNP	C	C	T			TCGA-AB-2995-03A-01D-0739-09	TCGA-AB-2995-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10a026ec-f343-4b63-b67e-59938e0cffac	ce73c6c8-40ab-4a3c-acd6-c22444da3567	22	29161774	29161774	C	T	SNP	LOC646513	XM_001132717.1	human	genbank	54_36p	+1	model	silent	c.144	p.L48	0.056	NULL	NULL	-	no_errors	545	0	0.00	722	148	16.99	1	2	66.67